Query psy5471
Match_columns 454
No_of_seqs 154 out of 380
Neff 4.3
Searched_HMMs 13730
Date Fri Aug 16 18:24:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5471.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/5471hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ijwc_ a.4.1.2 (C:) HIN recom 30.9 14 0.001 25.4 2.4 20 187-206 2-21 (47)
2 d2b7ta1 d.50.1.1 (A:1-73) dsRN 26.9 18 0.0013 26.4 2.6 19 345-363 51-69 (73)
3 d1fafa_ a.2.3.1 (A:) Large T a 23.0 19 0.0014 27.0 2.1 53 183-265 16-69 (79)
4 d2b7va1 d.50.1.1 (A:1-71) dsRN 20.9 42 0.0031 24.1 3.7 21 344-364 47-67 (71)
5 d2ouxa2 d.37.1.1 (A:136-262) M 19.6 36 0.0026 26.2 3.3 34 325-359 91-125 (127)
6 d2f1la1 b.41.1.4 (A:101-175) 1 18.6 23 0.0017 25.8 1.7 15 332-346 7-21 (75)
7 d1wjza_ a.2.3.1 (A:) CSL-type 17.1 32 0.0023 26.0 2.3 26 121-146 24-49 (94)
8 d2k49a2 d.348.1.1 (A:1-58) Unc 17.1 44 0.0032 23.7 2.9 24 335-358 18-46 (58)
9 d3bida1 d.348.1.1 (A:1-56) Unc 15.9 50 0.0036 23.2 2.9 23 336-358 17-44 (56)
10 d1fafa_ a.2.3.1 (A:) Large T a 15.1 60 0.0044 23.9 3.4 39 45-89 6-46 (79)
No 1
>d1ijwc_ a.4.1.2 (C:) HIN recombinase (DNA-binding domain) {Synthetic}
Probab=30.91 E-value=14 Score=25.38 Aligned_cols=20 Identities=20% Similarity=0.308 Sum_probs=17.4
Q ss_pred CCCCCcHHHHHHHHhhhhcc
Q psy5471 187 EPKGTTKEQVLWAKQLYESA 206 (454)
Q Consensus 187 ~~~~~td~~l~~A~~~~~Sa 206 (454)
+|+.||++|+..|+++.++-
T Consensus 2 R~~~lt~~q~~~a~~l~~~G 21 (47)
T d1ijwc_ 2 RPRAINKHEQEQISRLLEKG 21 (47)
T ss_dssp CCCSSCHHHHHHHHHHHHTT
T ss_pred CCCcCCHHHHHHHHHHHHCC
Confidence 48899999999999998764
No 2
>d2b7ta1 d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=26.88 E-value=18 Score=26.35 Aligned_cols=19 Identities=11% Similarity=0.051 Sum_probs=16.4
Q ss_pred eehHHHHHHhhhHHHhhhH
Q psy5471 345 GTSQLAAVKGISMVIFSRI 363 (454)
Q Consensus 345 G~Sk~AA~kAI~qta~SRi 363 (454)
|.||+.|++.-++-++-.+
T Consensus 51 G~SKK~Aeq~AA~~aL~~l 69 (73)
T d2b7ta1 51 GPTKKKAKLHAAEKALRSF 69 (73)
T ss_dssp ESSHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHH
Confidence 9999999999998887554
No 3
>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}
Probab=23.00 E-value=19 Score=26.98 Aligned_cols=53 Identities=17% Similarity=0.097 Sum_probs=38.9
Q ss_pred hccCCCCC-CcHHHHHHHHhhhhccccCCCCCcccccCccccccCchhhHHhhhcccCCCchhHHHHHHHhhhhhhhhhh
Q psy5471 183 CLKKEPKG-TTKEQVLWAKQLYESAFHPDSGEKQNIFGRMSFQVPGGMAITGALLTFYKTTPQIIFWQWVNQSFNALVNY 261 (454)
Q Consensus 183 ~~~~~~~~-~td~~l~~A~~~~~SavHPDTGe~Ip~lfRMSafvP~n~~I~g~ML~~~~t~~~viFWQW~NQSfNA~vNY 261 (454)
++..++.. .|.++|.+|....---+|||.|-- +. -.|=+|+.|+.+-+.
T Consensus 16 iLgl~~~~~~~~~~IkkaYr~l~~~~HPDk~g~----------------------------~e--~~~~in~Ay~~L~d~ 65 (79)
T d1fafa_ 16 LLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS----------------------------HA--LMQELNSLWGTFKTE 65 (79)
T ss_dssp HHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC----------------------------HH--HHHHHHHHHHHHHHH
T ss_pred HhCCCCCCCCCHHHHHHHHHHHHHHhCcccCCC----------------------------HH--HHHHHHHHHHHHCCH
Confidence 45556554 688999999999999999998631 11 147899999998877
Q ss_pred ccCC
Q psy5471 262 TNRN 265 (454)
Q Consensus 262 tNRN 265 (454)
..|-
T Consensus 66 ~~r~ 69 (79)
T d1fafa_ 66 VYNL 69 (79)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6544
No 4
>d2b7va1 d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=20.90 E-value=42 Score=24.06 Aligned_cols=21 Identities=10% Similarity=0.150 Sum_probs=17.2
Q ss_pred eeehHHHHHHhhhHHHhhhHh
Q psy5471 344 VGTSQLAAVKGISMVIFSRIL 364 (454)
Q Consensus 344 vG~Sk~AA~kAI~qta~SRi~ 364 (454)
.|.||+.|++.-++-++..++
T Consensus 47 ~G~SKK~Ak~~AA~~aL~~L~ 67 (71)
T d2b7va1 47 SGRNKKLAKARAAQSALATVF 67 (71)
T ss_dssp EESSHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHH
Confidence 399999999998888876543
No 5
>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}
Probab=19.59 E-value=36 Score=26.17 Aligned_cols=34 Identities=18% Similarity=0.178 Sum_probs=22.3
Q ss_pred hchhhhhcCceeecCCCCeee-ehHHHHHHhhhHHH
Q psy5471 325 MRQNEITNGVDVFDANGNRVG-TSQLAAVKGISMVI 359 (454)
Q Consensus 325 MR~~El~~GI~V~D~~G~~vG-~Sk~AA~kAI~qta 359 (454)
|+...+ .-++|.|++|+.+| .|..---++|.|=|
T Consensus 91 m~~~~~-~~lPVVD~~g~lvGiIt~~Dil~~i~eea 125 (127)
T d2ouxa2 91 IRDYDF-LAVPVTDYDDHLLGIVTVDDIIDVIDDEA 125 (127)
T ss_dssp HHHHTC-SEEEEECTTCBEEEEEEHHHHHHHHHHHH
T ss_pred HHHhCC-EEEEEEeCCCEEEEEEEHHHHHHHHHHHh
Confidence 444433 46889999999999 45555555555543
No 6
>d2f1la1 b.41.1.4 (A:101-175) 16S rRNA processing protein RimM, C-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=18.61 E-value=23 Score=25.78 Aligned_cols=15 Identities=27% Similarity=0.556 Sum_probs=13.5
Q ss_pred cCceeecCCCCeeee
Q psy5471 332 NGVDVFDANGNRVGT 346 (454)
Q Consensus 332 ~GI~V~D~~G~~vG~ 346 (454)
-|..|+|++|+.+|+
T Consensus 7 iG~~V~d~~g~~lG~ 21 (75)
T d2f1la1 7 EGLKVIDQGRQLLGV 21 (75)
T ss_dssp TTCEEEETTSCEEEE
T ss_pred CCCEEEeCCCCEEEE
Confidence 489999999999996
No 7
>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=17.09 E-value=32 Score=26.04 Aligned_cols=26 Identities=19% Similarity=0.312 Sum_probs=22.6
Q ss_pred CCCCCCchhHHHHhhhhhhcccCCCC
Q psy5471 121 EPPGTTKNDAIRAKRLYESAFHPDTG 146 (454)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~s~~hPdtg 146 (454)
.++..+.+|+.+|.+-.-.-+|||..
T Consensus 24 v~~~as~~eIk~aY~~l~~~~HPDk~ 49 (94)
T d1wjza_ 24 ADPSANMSDLKQKYQKLILLYHPDKQ 49 (94)
T ss_dssp CCTTCCHHHHHHHHHHTTSSSCSTTC
T ss_pred CCCCcCHHHHHHHHHHHHHHhhhhhc
Confidence 46678999999999999999999964
No 8
>d2k49a2 d.348.1.1 (A:1-58) Uncharacterized protein SO3888 {Shewanella oneidensis [TaxId: 70863]}
Probab=17.07 E-value=44 Score=23.68 Aligned_cols=24 Identities=29% Similarity=0.338 Sum_probs=18.0
Q ss_pred eeecCCCCeeee-----hHHHHHHhhhHH
Q psy5471 335 DVFDANGNRVGT-----SQLAAVKGISMV 358 (454)
Q Consensus 335 ~V~D~~G~~vG~-----Sk~AA~kAI~qt 358 (454)
.+.+.||++|+. ||.+|.++|..|
T Consensus 18 ~Lka~NGevIa~Se~Y~sk~~a~~gI~sV 46 (58)
T d2k49a2 18 VLKAGNGEVILTSELYTGKSGAMNGIESV 46 (58)
T ss_dssp EEECSSSCEEEECCCBSSHHHHHHHHHHH
T ss_pred EEEcCCCCEEEEcCCcCCHHHHHHHHHHH
Confidence 356789999974 577888888755
No 9
>d3bida1 d.348.1.1 (A:1-56) Uncharacterized protein NMB1088 {Neisseria meningitidis [TaxId: 487]}
Probab=15.88 E-value=50 Score=23.18 Aligned_cols=23 Identities=13% Similarity=0.222 Sum_probs=17.2
Q ss_pred eecCCCCeeee-----hHHHHHHhhhHH
Q psy5471 336 VFDANGNRVGT-----SQLAAVKGISMV 358 (454)
Q Consensus 336 V~D~~G~~vG~-----Sk~AA~kAI~qt 358 (454)
+.+.||++++. ||.+|.+||..|
T Consensus 17 Lka~Ng~vIa~Se~Y~sk~~a~~gI~sV 44 (56)
T d3bida1 17 LKAANHEIIAQGEGYTSKQNCQHAVDLL 44 (56)
T ss_dssp EECTTSCEEEECCCBSCHHHHHHHHHHH
T ss_pred EEeCCCCEEEecCCcCCHHHHHHHHHHH
Confidence 45789999974 577888887654
No 10
>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}
Probab=15.11 E-value=60 Score=23.95 Aligned_cols=39 Identities=26% Similarity=0.299 Sum_probs=27.0
Q ss_pred CHHHHHHHHHHHHHhhcCCCCCCC--CHHHHHHHhhhhccccCCCCC
Q psy5471 45 SDAELDKAKELRSQYLLKKEPKGT--TKEQVLWAKQLYESAFHPDSG 89 (454)
Q Consensus 45 s~~el~~Ak~lv~~y~~g~~~~~~--t~~~l~~ak~~~~s~~HPdtg 89 (454)
+.++..++-+++. ++++. |.+|+=+|=+..---+|||.|
T Consensus 6 s~~~~~~~y~iLg------l~~~~~~~~~~IkkaYr~l~~~~HPDk~ 46 (79)
T d1fafa_ 6 SRADKERLLELLK------LPRQLWGDFGRMQQAYKQQSLLLHPDKG 46 (79)
T ss_dssp CHHHHHHHHHHHT------CCSSSTTCHHHHHHHHHHHHHHSSGGGS
T ss_pred hHHHHHHHHHHhC------CCCCCCCCHHHHHHHHHHHHHHhCcccC
Confidence 4455555555553 55554 888888887777778999976
Done!