RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5471
(454 letters)
>gnl|CDD|112624 pfam03820, Mtc, Tricarboxylate carrier.
Length = 307
Score = 358 bits (921), Expect = e-122
Identities = 136/263 (51%), Positives = 174/263 (66%), Gaps = 4/263 (1%)
Query: 192 TKEQVLWAKQLYESAFHPDSGEKQNIFGRMSFQVPGGMAITGALLTFYKTTPQIIFWQWV 251
T +++ AK+LY+SAFHPD+GEK + GRMS QVP M ITG +LTFY+ TP ++FWQW
Sbjct: 49 TVDELWRAKKLYDSAFHPDTGEKVFLPGRMSAQVPMNMLITGGMLTFYRGTPGVVFWQWF 108
Query: 252 NQSFNALVNYTNRNANAPLTTTQLGVAYVSATVAACFTAIQFKSFLAKRAGPFWQRYVPF 311
NQSFNA VNYTNR+ ++P+++ QL V+Y +AT A A+ + KR P R VPF
Sbjct: 109 NQSFNAAVNYTNRSGDSPISSRQLLVSYCAATTGALGVALGLNKLV-KRMPPLLGRLVPF 167
Query: 312 AAVAAANCVNIPLMRQNEITNGVDVFDANGNRVGTSQLAAVKGISMVIFSRILMCAPGML 371
AAVAAAN +NIPLMR NE+ NG+DVFD NG VG S+ AA I V+ SRI M PGM+
Sbjct: 168 AAVAAANAINIPLMRGNELRNGIDVFDENGQTVGKSKKAAFDAIGQVVLSRIAMAVPGMV 227
Query: 372 VLPIIVEKLEKYRWYRTRTWFHAPFQTLGVGCFLMVMVPTACAIFPQMTSIGTSTLETLE 431
+ P+I+ +LEK W R R W +AP QTL G L P ACA+FPQ +SI +++ LE
Sbjct: 228 LPPLIMNRLEKRPWLRRRPWANAPLQTLLCGLGLTFATPLACALFPQRSSI---SVDKLE 284
Query: 432 PEAAQQIKSKDKKLSTVFFNKGL 454
PE TV+FNKGL
Sbjct: 285 PELHDLKDKDGNPPKTVYFNKGL 307
Score = 119 bits (301), Expect = 1e-30
Identities = 46/105 (43%), Positives = 68/105 (64%), Gaps = 3/105 (2%)
Query: 21 FDLNTFSGRFKYFAWVTNPALCIVSDAELDKAKELRSQYLLKKEPKGTTKEQVLWAKQLY 80
+D +TF GR ++F +TNP + S+ +L+KA+++ +Y K T +++ AK+LY
Sbjct: 1 WDQSTFLGRARHFFEITNPLNLLSSEKQLEKARKIVERYRAGKVSPNLTVDELWRAKKLY 60
Query: 81 ESAFHPDSGEKQNIFGRMSFQVPGGMAITGALLTFYKLKKEPPGT 125
+SAFHPD+GEK + GRMS QVP M ITG +LTFY+ PG
Sbjct: 61 DSAFHPDTGEKVFLPGRMSAQVPMNMLITGGMLTFYRG---TPGV 102
Score = 85.9 bits (213), Expect = 1e-18
Identities = 33/64 (51%), Positives = 44/64 (68%)
Query: 111 ALLTFYKLKKEPPGTTKNDAIRAKRLYESAFHPDTGEKQNIFGRMSFQVPGGMAVTGALL 170
++ Y+ K P T ++ RAK+LY+SAFHPDTGEK + GRMS QVP M +TG +L
Sbjct: 34 KIVERYRAGKVSPNLTVDELWRAKKLYDSAFHPDTGEKVFLPGRMSAQVPMNMLITGGML 93
Query: 171 TFYK 174
TFY+
Sbjct: 94 TFYR 97
>gnl|CDD|129880 TIGR00798, mtc, tricarboxylate carrier. The MTC family consists of
a limited number of homologues, all from eukaryotes. A
single member of the family has been functionally
characterized, the tricarboxylate carrier from rat liver
mitochondria. The rat liver mitochondrial tricarboxylate
carrier has been reported to transport citrate,
cis-aconitate, threo-D-isocitrate, D- and L-tartrate,
malate, succinate and phosphoenolpyruvate. It presumably
functions by a proton symport mechanism [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 318
Score = 329 bits (845), Expect = e-111
Identities = 128/267 (47%), Positives = 172/267 (64%), Gaps = 8/267 (2%)
Query: 191 TTKEQVLW-AKQLYESAFHPDSGEKQNIFGRMSFQVPGGMAITGALLTFYKTTPQIIFWQ 249
T E LW AK+LY+SAFHPD+GEK + GRMS QVP M ITG +LT Y++TP ++FWQ
Sbjct: 57 TVDE--LWRAKKLYDSAFHPDTGEKMFLPGRMSAQVPMNMVITGGMLTPYRSTPGVVFWQ 114
Query: 250 WVNQSFNALVNYTNRNANAPLTTTQLGVAYVSATVAACFTAIQFKSFLAK--RAGPFWQR 307
W+NQSFNA VNYTNR+ ++PLT +QL V+Y +A AC A+ + K P R
Sbjct: 115 WINQSFNAAVNYTNRSGDSPLTLSQLLVSYCAAVTGACGVALGLNMMVKKSPSLSPLIGR 174
Query: 308 YVPFAAVAAANCVNIPLMRQNEITNGVDVFDANGNRVGTSQLAAVKGISMVIFSRILMCA 367
VPFAAVA AN +NIP+MR NE+T G++VFD +G VG S+ AA I+ V+ SR++M
Sbjct: 175 LVPFAAVAVANAINIPMMRGNELTEGIEVFDEDGETVGKSKKAAALAIAQVVLSRVIMAV 234
Query: 368 PGMLVLPIIVEKLEKYRWYRTRTWFHAPFQTLGVGCFLMVMVPTACAIFPQMTSIGTSTL 427
P M++ P+I+ +LE+ W R R W P QTL G L P ACA+FPQ ++I ++
Sbjct: 235 PDMVMPPLIMNRLERTAWLRARPWMQIPIQTLLCGLGLAFATPLACALFPQKSAI---SV 291
Query: 428 ETLEPEAAQQIKSKDKKLSTVFFNKGL 454
+ LEP I+ V++NKGL
Sbjct: 292 DKLEPSLQNLIQKLGNPPKVVYYNKGL 318
Score = 114 bits (287), Expect = 1e-28
Identities = 50/103 (48%), Positives = 66/103 (64%), Gaps = 3/103 (2%)
Query: 16 IDKPLFDLNTFSGRFKYFAWVTNPALCIVSDAELDKAKELRSQYLLKKEPKGTTKEQVLW 75
I KP +D +TF GR ++F +TNP S+ +L+KA+E+ Y K T E LW
Sbjct: 5 ISKPRWDQSTFLGRARHFFEITNPLTLFSSEKQLEKAREIVEDYKAGKASPLTVDE--LW 62
Query: 76 -AKQLYESAFHPDSGEKQNIFGRMSFQVPGGMAITGALLTFYK 117
AK+LY+SAFHPD+GEK + GRMS QVP M ITG +LT Y+
Sbjct: 63 RAKKLYDSAFHPDTGEKMFLPGRMSAQVPMNMVITGGMLTPYR 105
Score = 82.0 bits (203), Expect = 3e-17
Identities = 33/63 (52%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
Query: 112 LLTFYKLKKEPPGTTKNDAIRAKRLYESAFHPDTGEKQNIFGRMSFQVPGGMAVTGALLT 171
++ YK K P T ++ RAK+LY+SAFHPDTGEK + GRMS QVP M +TG +LT
Sbjct: 44 IVEDYKAGKASPLTV-DELWRAKKLYDSAFHPDTGEKMFLPGRMSAQVPMNMVITGGMLT 102
Query: 172 FYK 174
Y+
Sbjct: 103 PYR 105
>gnl|CDD|221111 pfam11443, DUF2828, Domain of unknown function (DUF2828). This is
a uncharacterized domain found in eukaryotes and
viruses.
Length = 414
Score = 33.8 bits (78), Expect = 0.19
Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 11/49 (22%)
Query: 243 PQIIFWQWVNQSFNALVNYTNRNANAPLTTTQLGVAYVSATVAACFTAI 291
P+++FW N +N P+T+ GVA VS A
Sbjct: 360 PELVFW-----------NLAGSRSNVPVTSNDEGVALVSGFSPALLKLF 397
>gnl|CDD|237846 PRK14876, PRK14876, conjugal transfer mating pair stabilization
protein TraN; Provisional.
Length = 928
Score = 29.8 bits (67), Expect = 3.2
Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 5/47 (10%)
Query: 153 GRMSFQVPGGMAVTGALLTFYKYADYLSCYCLKKEPKGTTKEQVLWA 199
QV A+ A L K+ DY+ + +E +W+
Sbjct: 271 EYTRVQVSNPDAIISATLERAKWDDYMQVLV-----GKSGQETKVWS 312
>gnl|CDD|216093 pfam00746, Gram_pos_anchor, Gram positive anchor.
Length = 39
Score = 26.3 bits (59), Expect = 3.7
Identities = 11/32 (34%), Positives = 13/32 (40%), Gaps = 4/32 (12%)
Query: 143 PDTGEKQNIFGRMSFQVPGGMAVTGALLTFYK 174
P TGE NIF G + + G L K
Sbjct: 10 PKTGEASNIF----LTAAGLLLLAGGGLLLVK 37
>gnl|CDD|225180 COG2271, UhpC, Sugar phosphate permease [Carbohydrate transport and
metabolism].
Length = 448
Score = 29.5 bits (67), Expect = 4.1
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 220 RMSFQVPGGMAITGALLTFY--KTTPQIIFWQWVNQSFN-ALVNYTNRNANAPLTTTQLG 276
R +F PG +AI AL+ + + PQ + + L Y N LT Q+
Sbjct: 185 RAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGDPLEIYEEEKENEGLTAWQIF 244
Query: 277 VAYV 280
V YV
Sbjct: 245 VKYV 248
>gnl|CDD|227731 COG5444, COG5444, Uncharacterized conserved protein [Function
unknown].
Length = 565
Score = 29.4 bits (66), Expect = 4.3
Identities = 19/91 (20%), Positives = 27/91 (29%), Gaps = 7/91 (7%)
Query: 59 YLLKKEPKGTTKEQVLWAKQLYESAFHPDSGEKQN--IFGRMSFQVPGGMAITGALLTFY 116
LKK KE + A E P G F ++ +V G ++
Sbjct: 426 SNLKKNAYAPLKEALRKA---EEVYKTP-KGYNYETTHFYKIKNKVIGELSDKNVG-QKG 480
Query: 117 KLKKEPPGTTKNDAIRAKRLYESAFHPDTGE 147
+ KE G K+ K A H
Sbjct: 481 QRYKEVAGELKDKDGGHKIGRMLAGHKIIEN 511
>gnl|CDD|143486 cd06811, PLPDE_III_yhfX_like, Type III Pyridoxal 5-phosphate
(PLP)-Dependent Enzyme yhfX. This subfamily is composed
of the uncharacterized protein yhfX from Escherichia
coli K-12 and similar bacterial proteins. These proteins
are homologous to bacterial alanine racemases (AR),
which are fold type III PLP-dependent enzymes containing
an N-terminal PLP-binding TIM-barrel domain and a
C-terminal beta-sandwich domain. AR exists as homodimers
with active sites that lie at the interface between the
TIM barrel domain of one subunit and the beta-sandwich
domain of the other subunit. It catalyzes the
interconversion between L- and D-alanine, which is an
essential component of the peptidoglycan layer of
bacterial cell walls. Members of this subfamily may act
as PLP-dependent enzymes.
Length = 382
Score = 29.2 bits (66), Expect = 5.4
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 288 FTAIQFKSFLAKRAGPFWQRYVPFAAVAAANCVNIPLMRQNEITNG 333
FT ++ K L KR Q P +A +C +PL+ + +T+G
Sbjct: 212 FTLLKAKELLEKRGIEILQLNAP----SATSCATLPLLAEYGVTHG 253
>gnl|CDD|235874 PRK06847, PRK06847, hypothetical protein; Provisional.
Length = 375
Score = 28.7 bits (65), Expect = 7.5
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 8/43 (18%)
Query: 331 TNGVDVFDANGN--------RVGTSQLAAVKGISMVIFSRILM 365
+GVD+FD +G R+ L GI +RIL
Sbjct: 72 FDGVDLFDPDGTLLAELPTPRLAGDDLPGGGGIMRPALARILA 114
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.135 0.414
Gapped
Lambda K H
0.267 0.0770 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 23,332,115
Number of extensions: 2239475
Number of successful extensions: 1797
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1791
Number of HSP's successfully gapped: 22
Length of query: 454
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 354
Effective length of database: 6,502,202
Effective search space: 2301779508
Effective search space used: 2301779508
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (27.2 bits)