RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5471
(454 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 62.8 bits (152), Expect = 1e-10
Identities = 76/522 (14%), Positives = 147/522 (28%), Gaps = 146/522 (27%)
Query: 3 ILGYGSPPEDRIAIDKP---LFDLNTFSGRFKYFAWVTNPALCIVSDAELDKAKELRSQY 59
L +GS + P F + +F + P +D E EL ++
Sbjct: 10 TLSHGSL---EHVLLVPTASFFIASQLQEQFN--KILPEPTEGFAADDEPTTPAELVGKF 64
Query: 60 L------LKKEPKGTTKEQVLWAKQLYESAF------HPDSGEKQNIFGRMSFQVPGGMA 107
L ++ G + + +E+ + H + ++ + +
Sbjct: 65 LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIH-------ALAAKLLQENDTTLV 117
Query: 108 ITGALL-TFYK---LKKEPPGTTKNDAIRAKRLYESAFHPDTGEKQ--NIFGRMSFQVPG 161
T L+ + + K P N A L+ + G Q IFG Q
Sbjct: 118 KTKELIKNYITARIMAKRPFDKKSNSA-----LFRAV---GEGNAQLVAIFGG---Q--- 163
Query: 162 GMAVTGALLTFYK-----YADYLSCYCLKKEPKGTTKEQVLWAKQLYESAFHPDSGEKQN 216
G +++ Y Y G + A+ L E EK
Sbjct: 164 -----GNTDDYFEELRDLYQTY-------HVLVGDLIKFS--AETLSELIRTTLDAEK-- 207
Query: 217 IFGR----MSF-----QVPGGMAITGALLTFYKTTPQIIFWQWVN-QSFNALVNYTNRNA 266
+F + + + P + ++ P I Q + L+ +T
Sbjct: 208 VFTQGLNILEWLENPSNTPDKDYLLSIPISC----PLIGVIQLAHYVVTAKLLGFTPGEL 263
Query: 267 NAPL-TTTQLGVAYVSATVAACFTAIQFKSFL--AKRAGP--FW-----QRYVPFAAVAA 316
+ L T V+A A ++SF ++A F+ P ++
Sbjct: 264 RSYLKGATGHSQGLVTAVAIA--ETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLP- 320
Query: 317 ANCVNIPLMRQNEITNGVDVFDANGNRVGTSQLAAVKGISMV-IFSRI------------ 363
P + ++ + N G V + L ++ ++ + +
Sbjct: 321 ------PSILEDSLENN------EG--VPSPML-SISNLTQEQVQDYVNKTNSHLPAGKQ 365
Query: 364 ----LMCAPGMLVL---PI----IVEKLEKYRWYRTRTWFHAPF---QTLGVGCFLMVMV 409
L+ LV+ P + L K + PF + FL V
Sbjct: 366 VEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVAS 425
Query: 410 PTACAIF--PQMTSIGTSTLETLEPEAAQQIKSKDKKLSTVF 449
P F + + L +KD ++ V+
Sbjct: 426 P-----FHSHLLVPASDLINKDLVKNNV-SFNAKDIQI-PVY 460
Score = 52.7 bits (126), Expect = 2e-07
Identities = 95/563 (16%), Positives = 160/563 (28%), Gaps = 190/563 (33%)
Query: 8 SPPEDRIAIDKP-----LFDLNTFSGRF-KYFAWVTNPALCIVSDAELDKA--KELRSQY 59
P E A D+P L G+F Y + + P+ + ++ E + Y
Sbjct: 43 EPTEGFAADDEPTTPAELV------GKFLGYVSSLVEPS-KVGQFDQVLNLCLTEFENCY 95
Query: 60 L-----------LKKEPKGTTKEQVLWAKQLY--------------ESAF--HPDSGEKQ 92
L L +E T + K SA G Q
Sbjct: 96 LEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQ 155
Query: 93 --NIFG------------RMSFQVPGGMA---ITGALLTFYKLKKEPPGTTKNDAIRAKR 135
IFG R +Q + I + T +L + A++
Sbjct: 156 LVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTL--------DAEK 207
Query: 136 LYESAF-------HPDTGEKQNIFGRMSFQVPGGMAVTGALLTFYKYADYL-SCYCLKKE 187
++ +P ++ + P L+ + A Y+ + L
Sbjct: 208 VFTQGLNILEWLENPSNTPDKDYLLSIPISCP--------LIGVIQLAHYVVTAKLLGFT 259
Query: 188 P-------KGTT--KEQVL----------W------AKQLYESAFHPDSG-EKQNIFGRM 221
P KG T + ++ W ++ F G +
Sbjct: 260 PGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFF--IGVRCYEAYPNT 317
Query: 222 SFQ-------------VPGGM-AITGALLTFYKTTPQIIFWQWVNQSFN-------ALVN 260
S VP M +I+ LT + + N +LVN
Sbjct: 318 SLPPSILEDSLENNEGVPSPMLSISN--LTQEQVQDYV---NKTNSHLPAGKQVEISLVN 372
Query: 261 YTNRN---ANAPLTTTQLGVAYVSATVAACFTAIQFKSFLAKRAGPFWQRYVPFAA---- 313
+N + P + L + A Q + ++R F R++P A+
Sbjct: 373 -GAKNLVVSGPPQSLYGLNLTL--RKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHS 429
Query: 314 ---VAAANCVNIPLMRQNEITNGVD----VFD-ANGNRVGTSQLAAVKGISMVIFSRILM 365
V A++ +N L++ N N D V+D +G S L + G I RI+
Sbjct: 430 HLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDG-----SDLRVLSG---SISERIVD 481
Query: 366 CAPGMLVLPIIVEKLEKYRWYRTRTWFHA-------PFQTLGVGCFLMVMVPTACAIFPQ 418
C ++ LP+ +W T T F A P G+G
Sbjct: 482 C---IIRLPV--------KWETT-TQFKATHILDFGPGGASGLGVLTHRNK--------D 521
Query: 419 MTSIGTSTLETLEPEAAQQIKSK 441
T + TL+ K
Sbjct: 522 GTGVRVIVAGTLDINPDDDYGFK 544
Score = 31.9 bits (72), Expect = 0.52
Identities = 28/191 (14%), Positives = 54/191 (28%), Gaps = 89/191 (46%)
Query: 6 YGSPPEDRIAIDKPLFDLN------TFSG--------RFKYFAWVTNPALCIVSDAELDK 51
+ + + ++ +K ++N TF +F T PAL ++ A
Sbjct: 1693 FETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQF------TQPALTLMEKAAF-- 1744
Query: 52 AKELRSQYLLKKEPKGTTKEQVLWAKQLYESAF--HPDS-GEKQNIF-------GRMSFQ 101
++L+S+ L+ ++ F H S GE + MS +
Sbjct: 1745 -EDLKSKGLIPA-----------------DATFAGH--SLGE----YAALASLADVMSIE 1780
Query: 102 VPGGMAITGALLTFYKLKKEPPGTTKNDAIR--AKR--LYESAFHPDTGEKQNIFGRMSF 157
+ R + A D + N M
Sbjct: 1781 ---------------------------SLVEVVFYRGMTMQVAVPRDELGRSN--YGMIA 1811
Query: 158 QVPGGMAVTGA 168
PG +A + +
Sbjct: 1812 INPGRVAASFS 1822
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 57.6 bits (138), Expect = 6e-09
Identities = 61/459 (13%), Positives = 113/459 (24%), Gaps = 139/459 (30%)
Query: 43 IVSDAELD-----KAKELRSQYLLKK-EPKGTTKEQVLWAKQLYESAFHPDSGEKQNIFG 96
I+S E+D K + L K +E V ++ E +
Sbjct: 45 ILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ--EEMV---QKFVEEVLRIN--------- 90
Query: 97 RMSFQVPGGMAITGALLTFYKLKKEPPGTTKNDAIRAKRLYESAFHPDTGEKQNIFGRMS 156
YK P T + R+Y + Q +F +
Sbjct: 91 -------------------YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ-VFAKY- 129
Query: 157 FQVPGG---MAVTGALLTFYKYADYLSCYCLKKEP-------KGTTKEQVLWAKQLYESA 206
V + + ALL L+ G+ K +
Sbjct: 130 -NVSRLQPYLKLRQALLE------------LRPAKNVLIDGVLGSGK-TWVALDVCLSYK 175
Query: 207 FHPDSGEKQNIFGRMSFQVPGGMAITGALLTF-YKTTPQIIFWQWVNQSFNALVNYTNRN 265
+M F++ L +P+ + + N+T+R+
Sbjct: 176 VQC----------KMDFKI--------FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217
Query: 266 ---ANAPLTTTQLGVAYVSATVAACFTAIQFKSFLAKRAGP--------FWQRYV--PFA 312
+N L + + + L + F
Sbjct: 218 DHSSNIKLRIHSI--------------QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN 263
Query: 313 AVAAANCVNIPLMRQNEITNGVDVFDANGNRVGTSQLAAVKGISMVIFSRILMCAPGML- 371
+C + R ++T+ + + + + + L C P L
Sbjct: 264 L----SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP 319
Query: 372 ---------VLPIIVEKLEKY--RWYRTRTWFHAPFQTLGVGCFLMVMVPT-------AC 413
L II E + W + T+ + L V+ P
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI-IESSLNVLEPAEYRKMFDRL 378
Query: 414 AIFPQMTSIGTSTLETL----EPEAAQQIKSKDKKLSTV 448
++FP I T L + + +K K S V
Sbjct: 379 SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417
Score = 38.3 bits (88), Expect = 0.005
Identities = 32/214 (14%), Positives = 56/214 (26%), Gaps = 70/214 (32%)
Query: 15 AIDKPLFDLNT--FSGRFKYFA------WVTNPALCIV------SDAELDKAKELRSQYL 60
I+ L L + F + + L ++ SD + +L L
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV-VNKLHKYSL 416
Query: 61 LKKEPKGTTKE-----QVLWAKQLYESAFHPDSGEKQNIFGRMSFQVPGGMAITGALLTF 115
++K+PK +T L K E A H + ++
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLENEYALH-----RS-------------------IVDH 452
Query: 116 YKLKKEPPGTTKNDAIRAKRLYES-AFH---PDTGEKQNIFGRM----SF---------- 157
Y + K + Y H + E+ +F + F
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDST 512
Query: 158 --QVPGGMAVTGALLTFYKYADYLSCYCLKKEPK 189
G + T L Y Y+ +PK
Sbjct: 513 AWNASGSILNT--LQQLKFYKPYIC----DNDPK 540
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology,
IGSF, cell SU receptor signalling, glycosylation,
membrane protein; HET: NAG; 2.90A {Homo sapiens}
Length = 118
Score = 31.3 bits (71), Expect = 0.21
Identities = 15/70 (21%), Positives = 24/70 (34%), Gaps = 4/70 (5%)
Query: 179 LSCYCLKKEPKGTTKEQVLWAKQLYESA---FHPDSGEKQNIFGRMSFQV-PGGMAITGA 234
L CY + T Q+ WA+ + FH G + R+ F G + A
Sbjct: 20 LPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNA 79
Query: 235 LLTFYKTTPQ 244
L + +
Sbjct: 80 SLRMFGLRVE 89
>3htv_A D-allose kinase, allokinase; NP_418508.1, structural genomics,
joint CEN structural genomics, JCSG, protein structure
initiative; HET: MSE; 1.95A {Escherichia coli k-12}
Length = 310
Score = 30.7 bits (70), Expect = 0.82
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 296 FLAKRAGPFWQRYVPFAAVAAANCVNI 322
F+ PF Q + AA A A +N+
Sbjct: 211 FVHAENAPFVQSLLENAARAIATSINL 237
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.90
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 23 LNTFSGRFKYFAWVTNPALCIVSDAE 48
L K +A + PAL I + E
Sbjct: 22 LKKLQASLKLYADDSAPALAIKATME 47
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane,
major facilitator superfamily, secondary active membrane
transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Length = 451
Score = 28.9 bits (65), Expect = 3.7
Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 2/63 (3%)
Query: 220 RMSFQVPGGMAITGAL--LTFYKTTPQIIFWQWVNQSFNALVNYTNRNANAPLTTTQLGV 277
+ +P AI AL + TPQ + + N + N A LT Q+ +
Sbjct: 186 HAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFM 245
Query: 278 AYV 280
YV
Sbjct: 246 QYV 248
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.135 0.414
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,928,482
Number of extensions: 408139
Number of successful extensions: 649
Number of sequences better than 10.0: 1
Number of HSP's gapped: 643
Number of HSP's successfully gapped: 11
Length of query: 454
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 357
Effective length of database: 3,993,456
Effective search space: 1425663792
Effective search space used: 1425663792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.0 bits)