RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5471
         (454 letters)



>d2hj1a1 d.15.3.4 (A:11-87) Hypothetical protein HI0395 {Haemophilus
           influenzae [TaxId: 727]}
          Length = 77

 Score = 26.1 bits (58), Expect = 2.0
 Identities = 9/36 (25%), Positives = 11/36 (30%), Gaps = 5/36 (13%)

Query: 122 PPGTTKNDAIRAKRLYESAFHPDTGEKQN---IFGR 154
             G T   AI    +      P+     N   IF R
Sbjct: 23  DEGITVQTAITQSGILS--QFPEIDLSTNKIGIFSR 56


>d1hska1 d.145.1.2 (A:15-208) Uridine
          diphospho-N-Acetylenolpyruvylglucosamine reductase
          (MurB), N-terminal domain {Staphylococcus aureus
          [TaxId: 1280]}
          Length = 194

 Score = 27.1 bits (59), Expect = 4.0
 Identities = 7/31 (22%), Positives = 13/31 (41%), Gaps = 2/31 (6%)

Query: 10 PEDRIAIDKPLFDLNTF--SGRFKYFAWVTN 38
          P ++I +D+PL         G   ++   T 
Sbjct: 13 PNEKIKVDEPLKRYTYTKTGGNADFYITPTK 43


>d1cnt1_ a.26.1.1 (1:) Ciliary neurotrophic factor (CNTF) {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 177

 Score = 26.3 bits (58), Expect = 5.8
 Identities = 6/27 (22%), Positives = 10/27 (37%)

Query: 1   MQILGYGSPPEDRIAIDKPLFDLNTFS 27
           M +L Y  P  +   +   + D   F 
Sbjct: 117 MILLEYKIPRNEADGMPINVGDGGLFE 143


>d1f00i1 b.1.14.1 (I:658-752) Intimin {Escherichia coli [TaxId:
           562]}
          Length = 95

 Score = 25.2 bits (55), Expect = 6.5
 Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 2/44 (4%)

Query: 244 QIIFWQWVNQSFNALVNYTNRN--ANAPLTTTQLGVAYVSATVA 285
           Q + +       +     T+ N  A   LT+T  G + VSA V+
Sbjct: 37  QEVTFTTTLGKLSNSTEKTDTNGYAKVTLTSTTPGKSLVSARVS 80


>d1scza_ c.43.1.1 (A:) Dihydrolipoamide succinyltransferase
           {Escherichia coli [TaxId: 562]}
          Length = 233

 Score = 26.5 bits (58), Expect = 6.6
 Identities = 7/46 (15%), Positives = 16/46 (34%)

Query: 377 VEKLEKYRWYRTRTWFHAPFQTLGVGCFLMVMVPTACAIFPQMTSI 422
           ++ +   R      +       LG   F +  V  A   +P++ + 
Sbjct: 38  MKPIMDLRKQYGEAFEKRHGIRLGFMSFYVKAVVEALKRYPEVNAS 83


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.135    0.414 

Gapped
Lambda     K      H
   0.267   0.0715    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,686,211
Number of extensions: 77546
Number of successful extensions: 169
Number of sequences better than 10.0: 1
Number of HSP's gapped: 169
Number of HSP's successfully gapped: 5
Length of query: 454
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 366
Effective length of database: 1,199,356
Effective search space: 438964296
Effective search space used: 438964296
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.6 bits)