BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5474
(138 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A
Morphinan Antagonist
Length = 464
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Query: 61 MVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTV-LVEVN 119
M L SI+ +G+ GN +V VI++ M+ +TNI++ NL++AD + T T+ VN
Sbjct: 21 MALYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADALA----TSTLPFQSVN 76
Query: 120 SKPETWQMGEHMWKM 134
TW G + K+
Sbjct: 77 YLMGTWPFGNILCKI 91
>pdb|4EA3|A Chain A, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
Length = 434
Score = 43.1 bits (100), Expect = 4e-05, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
Query: 66 IILCIG-VLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLL 108
+ +C+G +LGN +V VIL+ M+ +TNI++ NL++AD +VLL
Sbjct: 133 LAVCVGGLLGNCLVMYVILRHTKMKTATNIYIFNLALADTLVLL 176
>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
pdb|4DJH|B Chain B, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
Length = 480
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 43/67 (64%), Gaps = 6/67 (8%)
Query: 45 GFDDGPQFPAYIRTPSM-----VLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNL 99
G +D PA+I +P++ + S++ +G++GN +V VI++ M+ +TNI++ NL
Sbjct: 6 GSEDAQLEPAHI-SPAIPVIITAVYSVVFVVGLVGNSLVMFVIIRYTKMKTATNIYIFNL 64
Query: 100 SIADLMV 106
++AD +V
Sbjct: 65 ALADALV 71
>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To
Naltrindole
Length = 461
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 63 LCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTV-LVEVNSK 121
L S + +G+LGN++V I++ ++ +TNI++ NL++AD + T T+
Sbjct: 20 LYSAVCAVGLLGNVLVMFGIVRYTKLKTATNIYIFNLALADALA----TSTLPFQSAKYL 75
Query: 122 PETWQMGEHMWK 133
ETW GE + K
Sbjct: 76 METWPFGELLCK 87
>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
pdb|3PBL|B Chain B, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
Length = 481
Score = 38.9 bits (89), Expect = 9e-04, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 60 SMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVL 115
++ C++IL I V GN +V +LK + ++ +TN +++L++ADL+V + P V+
Sbjct: 42 ALSYCALILAI-VFGNGLVCMAVLKERALQTTTNYLVVSLAVADLLVATLVMPWVV 96
>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 514
Score = 37.4 bits (85), Expect = 0.002, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 61 MVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNS 120
+V+ I+L I V GN++V I K + ++ TN F+ +L+ ADL++ L P + +
Sbjct: 187 IVMSLIVLAI-VFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILT 245
Query: 121 KPETWQMG 128
K TW G
Sbjct: 246 K--TWTFG 251
>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization
Of A G Protein Coupled Receptor
Length = 309
Score = 35.0 bits (79), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 60 SMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVN 119
+V+ I+L I V GN++V I K + ++ TN F+ +L+ ADL++ L P +
Sbjct: 9 GIVMSLIVLAI-VFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHIL 67
Query: 120 SKPETWQMG 128
+K TW G
Sbjct: 68 TK--TWTFG 74
>pdb|3OE6|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In I222
Spacegroup
Length = 508
Score = 34.7 bits (78), Expect = 0.017, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 30/44 (68%)
Query: 65 SIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLL 108
SII G++GN +V V+ K +R+ T+ + ++LS+ADL+ ++
Sbjct: 56 SIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVI 99
>pdb|3OE0|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Cyclic Peptide Antagonist Cvx15
pdb|3OE9|A Chain A, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE9|B Chain B, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 499
Score = 34.7 bits (78), Expect = 0.018, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 30/44 (68%)
Query: 65 SIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLL 108
SII G++GN +V V+ K +R+ T+ + ++LS+ADL+ ++
Sbjct: 56 SIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVI 99
>pdb|3ODU|A Chain A, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3ODU|B Chain B, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3OE8|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|B Chain B, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|C Chain C, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 502
Score = 34.7 bits (78), Expect = 0.018, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 30/44 (68%)
Query: 65 SIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLL 108
SII G++GN +V V+ K +R+ T+ + ++LS+ADL+ ++
Sbjct: 56 SIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVI 99
>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The
Beta2 Adrenoceptor
Length = 501
Score = 34.7 bits (78), Expect = 0.019, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 61 MVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTP 112
+V+ I+L I V GN++V I K + ++ TN F+ +L+ ADL++ L P
Sbjct: 46 IVMSLIVLAI-VFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVP 96
>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G
Protein- Coupled Receptor
Length = 500
Score = 34.7 bits (78), Expect = 0.019, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 61 MVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTP 112
+V+ I+L I V GN++V I K + ++ TN F+ +L+ ADL++ L P
Sbjct: 45 IVMSLIVLAI-VFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVP 95
>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor.
pdb|3NY8|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Inverse Agonist Ici 118,551
pdb|3NY9|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With A Novel Inverse Agonist
pdb|3NYA|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Neutral Antagonist Alprenolol
Length = 490
Score = 34.3 bits (77), Expect = 0.020, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 61 MVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTP 112
+V+ I+L I V GN++V I K + ++ TN F+ +L+ ADL++ L P
Sbjct: 46 IVMSLIVLAI-VFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVP 96
>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex
Length = 458
Score = 34.3 bits (77), Expect = 0.024, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 61 MVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTP 112
+V+ I+L I V GN++V I K + ++ TN F+ +L+ ADL++ L P
Sbjct: 14 IVMSLIVLAI-VFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVP 64
>pdb|3EML|A Chain A, The 2.6 A Crystal Structure Of A Human A2a Adenosine
Receptor Bound To Zm241385.
pdb|3QAK|A Chain A, Agonist Bound Structure Of The Human Adenosine A2a
Receptor
Length = 488
Score = 33.1 bits (74), Expect = 0.046, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 30/46 (65%)
Query: 67 ILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTP 112
I + +LGN++V + + +++N TN F+++L+ AD+ V ++ P
Sbjct: 31 IAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIP 76
>pdb|4EIY|A Chain A, Crystal Structure Of The Chimeric Protein Of A2aar-Bril In
Complex With Zm241385 At 1.8a Resolution
Length = 447
Score = 33.1 bits (74), Expect = 0.050, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 30/46 (65%)
Query: 67 ILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTP 112
I + +LGN++V + + +++N TN F+++L+ AD+ V ++ P
Sbjct: 41 IAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIP 86
>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic
Receptor- Fab Complex
Length = 366
Score = 32.7 bits (73), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 60 SMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTP 112
+V+ I+L I V GN++V I K + ++ TN F+ +L+ ADL++ L P
Sbjct: 38 GIVMSLIVLAI-VFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVP 89
>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 365
Score = 32.7 bits (73), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 60 SMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTP 112
+V+ I+L I V GN++V I K + ++ TN F+ +L+ ADL++ L P
Sbjct: 37 GIVMSLIVLAI-VFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVP 88
>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 342
Score = 32.3 bits (72), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 60 SMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTP 112
+V+ I+L I V GN++V I K + ++ TN F+ +L+ ADL++ L P
Sbjct: 14 GIVMSLIVLAI-VFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVP 65
>pdb|3V2W|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
3.35a
pdb|3V2Y|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
2.80a
Length = 520
Score = 32.0 bits (71), Expect = 0.12, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 66 IILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETW 125
+I C +L NI V I K+K F+ NL+++DL+ + T +L+ S T+
Sbjct: 72 LICCFIILENIFVLLTIWKTKKFHRPMYYFIGNLALSDLLAGVAYTANLLL---SGATTY 128
Query: 126 QMGEHMWKMAE 136
++ W + E
Sbjct: 129 KLTPAQWFLRE 139
>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex
With Doxepin
Length = 452
Score = 31.6 bits (70), Expect = 0.13, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 59 PSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTP-TVLVE 117
P +V+ S I + V N++V + + + N+++++LS+ADL+V V P +L
Sbjct: 10 PLVVVLSTICLVTVGLNLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMPMNILYL 69
Query: 118 VNSKPETWQMG 128
+ SK W +G
Sbjct: 70 LMSK---WSLG 77
>pdb|2Y00|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y01|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y01|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y02|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y02|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y03|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y03|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y04|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|2Y04|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|4AMI|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMI|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMJ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
pdb|4AMJ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
Length = 315
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 34/51 (66%)
Query: 62 VLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTP 112
+L ++++ + V GN++V I ++ ++ TN+F+ +L+ ADL+V L+ P
Sbjct: 16 LLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVP 66
>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|C Chain C, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|D Chain D, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2YCW|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCW|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCX|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCX|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCZ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCZ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCY|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCY|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|4GPO|A Chain A, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
pdb|4GPO|B Chain B, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
Length = 313
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 34/51 (66%)
Query: 62 VLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTP 112
+L ++++ + V GN++V I ++ ++ TN+F+ +L+ ADL+V L+ P
Sbjct: 16 LLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVP 66
>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor
pdb|3REY|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Xac
pdb|3RFM|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Caffeine
pdb|3UZA|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
6-(2,6-
Dimethylpyridin-4-Yl)-5-Phenyl-1,2,4-Triazin-3-Amine
pdb|3UZC|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
4-(3-Amino-5- Phenyl-1,2,4-Triazin-6-Yl)-2-Chlorophenol
Length = 329
Score = 31.2 bits (69), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 30/43 (69%)
Query: 70 IGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTP 112
+ +LGN++V + + +++N TN F+++L+ AD++V ++ P
Sbjct: 19 LAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADILVGVLAIP 61
>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 2.7 A Resolution
pdb|3VGA|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 3.1 A Resolution
Length = 326
Score = 30.0 bits (66), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 29/43 (67%)
Query: 70 IGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTP 112
+ +LGN++V + + +++N TN F+++L+ AD+ V ++ P
Sbjct: 19 LAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIP 61
>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|B Chain B, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|C Chain C, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|D Chain D, Structure Of The M3 Muscarinic Acetylcholine Receptor
Length = 479
Score = 30.0 bits (66), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 26/44 (59%)
Query: 63 LCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMV 106
L + + ++GNI+V +K ++ N FL++L+ ADL++
Sbjct: 18 LTGFLALVTIIGNILVIVAFKVNKQLKTVNNYFLLSLACADLII 61
>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|3OAX|B Chain B, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|1GZM|A Chain A, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1GZM|B Chain B, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1HZX|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1HZX|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|2I36|A Chain A, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|B Chain B, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|C Chain C, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I35|A Chain A, Crystal Structure Of Rhombohedral Crystal Form Of
Ground-State Rhodopsin
pdb|2I37|A Chain A, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|B Chain B, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|C Chain C, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2HPY|A Chain A, Crystallographic Model Of Lumirhodopsin
pdb|2HPY|B Chain B, Crystallographic Model Of Lumirhodopsin
pdb|2PED|A Chain A, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2PED|B Chain B, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2G87|A Chain A, Crystallographic Model Of Bathorhodopsin
pdb|2G87|B Chain B, Crystallographic Model Of Bathorhodopsin
pdb|1L9H|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1L9H|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1U19|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
pdb|1U19|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
Length = 349
Score = 29.6 bits (65), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
Query: 48 DGPQFPAYIRTP---SMVLCSIILCI--GVLGNIMVPCVILKSKDMRNSTNIFLMNLSIA 102
+ PQ+ Y+ P SM+ + L I G N + V ++ K +R N L+NL++A
Sbjct: 26 EAPQY--YLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVA 83
Query: 103 DLMVLL 108
DL ++
Sbjct: 84 DLFMVF 89
>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted)
pdb|1LN6|A Chain A, Structure Of Bovine Rhodopsin (Metarhodopsin Ii)
pdb|3CAP|A Chain A, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3CAP|B Chain B, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3C9L|A Chain A, Structure Of Ground-State Bovine Rhodospin In A Hexagonal
Crystal Form
pdb|1F88|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1F88|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|3DQB|A Chain A, Crystal Structure Of The Active G-protein-coupled Receptor
Opsin In Complex With A C-terminal Peptide Derived From
The Galpha Subunit Of Transducin
pdb|3PQR|A Chain A, Crystal Structure Of Metarhodopsin Ii In Complex With A
C-Terminal Peptide Derived From The Galpha Subunit Of
Transducin
pdb|3PXO|A Chain A, Crystal Structure Of Metarhodopsin Ii
Length = 348
Score = 29.6 bits (65), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
Query: 48 DGPQFPAYIRTP---SMVLCSIILCI--GVLGNIMVPCVILKSKDMRNSTNIFLMNLSIA 102
+ PQ+ Y+ P SM+ + L I G N + V ++ K +R N L+NL++A
Sbjct: 25 EAPQY--YLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVA 82
Query: 103 DLMVLL 108
DL ++
Sbjct: 83 DLFMVF 88
>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively
Active N2c,M257y,D282c Rhodopsin Mutant In Complex With
A Peptide Resembling The C-Terminus Of The
Galpha-Protein Subunit (Gact)
Length = 349
Score = 29.3 bits (64), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
Query: 48 DGPQFPAYIRTP---SMVLCSIILCI--GVLGNIMVPCVILKSKDMRNSTNIFLMNLSIA 102
+ PQ+ Y+ P SM+ + L I G N + V ++ K +R N L+NL++A
Sbjct: 26 EAPQY--YLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVA 83
Query: 103 DLMVLL 108
DL ++
Sbjct: 84 DLFMVF 89
>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c,
D282c Rhodopsin Mutant With Bound Galphact Peptide
Length = 349
Score = 29.3 bits (64), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
Query: 48 DGPQFPAYIRTP---SMVLCSIILCI--GVLGNIMVPCVILKSKDMRNSTNIFLMNLSIA 102
+ PQ+ Y+ P SM+ + L I G N + V ++ K +R N L+NL++A
Sbjct: 26 EAPQY--YLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVA 83
Query: 103 DLMVLL 108
DL ++
Sbjct: 84 DLFMVF 89
>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
pdb|2J4Y|B Chain B, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
Length = 349
Score = 29.3 bits (64), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
Query: 48 DGPQFPAYIRTP---SMVLCSIILCI--GVLGNIMVPCVILKSKDMRNSTNIFLMNLSIA 102
+ PQ+ Y+ P SM+ + L I G N + V ++ K +R N L+NL++A
Sbjct: 26 EAPQY--YLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVA 83
Query: 103 DLMVLL 108
DL ++
Sbjct: 84 DLFMVF 89
>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal
Crystal Form
Length = 348
Score = 29.3 bits (64), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
Query: 48 DGPQFPAYIRTP---SMVLCSIILCI--GVLGNIMVPCVILKSKDMRNSTNIFLMNLSIA 102
+ PQ+ Y+ P SM+ + L I G N + V ++ K +R N L+NL++A
Sbjct: 25 EAPQY--YLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVA 82
Query: 103 DLMVLL 108
DL ++
Sbjct: 83 DLFMVF 88
>pdb|2KS9|A Chain A, Solution Conformation Of Substance P In Water Complexed
With Nk1r
pdb|2KSA|A Chain A, Substance P In DmpcCHAPS ISOTROPIC Q0.25 BICELLES AS A
LIGAND FOR Nk1r
pdb|2KSB|A Chain A, Substance P In Isotropic Q0.25 DmpcCHAPSGM1 BICELLES AS A
LIGAND For Nk1r
Length = 364
Score = 29.3 bits (64), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 81 VILKSKDMRNSTNIFLMNLSIAD 103
+IL K MR TN FL+NL+ A+
Sbjct: 56 IILAHKRMRTVTNYFLVNLAFAE 78
>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound
pdb|2YDV|A Chain A, Thermostabilised Human A2a Receptor With Neca Bound
Length = 325
Score = 29.3 bits (64), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 29/43 (67%)
Query: 70 IGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTP 112
+ +LGN++V + + +++N TN F+++ + AD++V ++ P
Sbjct: 19 LAILGNVLVCWAVWLNSNLQNVTNYFVVSAAAADILVGVLAIP 61
>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine
Receptor Bound To An Antagonist
Length = 467
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 24/37 (64%)
Query: 70 IGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMV 106
+ ++GNI+V I ++ ++ N FL +L+ ADL++
Sbjct: 36 VTIIGNILVMVSIKVNRHLQTVNNYFLFSLACADLII 72
>pdb|2E9Y|A Chain A, Crystal Structure Of Project Ape1968 From Aeropyrum Pernix
K1
pdb|2E9Y|B Chain B, Crystal Structure Of Project Ape1968 From Aeropyrum Pernix
K1
Length = 316
Score = 27.3 bits (59), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 74 GNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETW 125
G ++ P + KD+ +S +N ADL+V+L P V V + E W
Sbjct: 204 GGVLEPVEAVVDKDLASSLLATQLN---ADLLVILTDVPGVAVNYGREGERW 252
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.134 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,751,412
Number of Sequences: 62578
Number of extensions: 122201
Number of successful extensions: 310
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 272
Number of HSP's gapped (non-prelim): 40
length of query: 138
length of database: 14,973,337
effective HSP length: 89
effective length of query: 49
effective length of database: 9,403,895
effective search space: 460790855
effective search space used: 460790855
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)