Query psy5474
Match_columns 138
No_of_seqs 210 out of 1512
Neff 8.8
Searched_HMMs 46136
Date Fri Aug 16 18:28:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5474.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5474hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4219|consensus 99.7 6.9E-18 1.5E-22 129.2 6.5 88 49-138 27-114 (423)
2 PHA03234 DNA packaging protein 99.6 8E-16 1.7E-20 118.0 7.4 78 56-137 31-110 (338)
3 PHA02638 CC chemokine receptor 99.4 1.7E-12 3.7E-17 102.2 10.4 77 56-137 97-173 (417)
4 PHA02834 chemokine receptor-li 99.4 9.3E-13 2E-17 100.3 8.0 77 56-137 27-103 (323)
5 KOG4220|consensus 99.4 1.1E-13 2.4E-18 106.7 -0.0 77 57-135 30-106 (503)
6 PHA03235 DNA packaging protein 99.2 2.8E-11 6.1E-16 95.1 8.3 78 56-137 31-110 (409)
7 PHA03087 G protein-coupled che 99.2 2.3E-11 5.1E-16 92.7 7.2 78 56-137 39-116 (335)
8 PF00001 7tm_1: 7 transmembran 98.9 7.1E-10 1.5E-14 79.6 3.7 62 74-137 1-62 (257)
9 PF10320 7TM_GPCR_Srsx: Serpen 98.2 7.9E-07 1.7E-11 66.0 2.0 48 69-116 2-49 (257)
10 KOG2087|consensus 97.3 6.5E-05 1.4E-09 57.8 0.4 74 64-137 31-109 (363)
11 PF11710 Git3: G protein-coupl 96.2 0.019 4.1E-07 41.2 6.3 51 86-138 30-80 (201)
12 PF10324 7TM_GPCR_Srw: Serpent 96.1 0.015 3.2E-07 44.1 5.5 51 67-118 6-57 (318)
13 PF05296 TAS2R: Mammalian tast 95.5 0.093 2E-06 39.9 7.5 60 56-115 5-67 (303)
14 PF05462 Dicty_CAR: Slime mold 95.4 0.042 9.2E-07 41.9 5.5 73 59-137 8-80 (303)
15 PF10328 7TM_GPCR_Srx: Serpent 94.8 0.055 1.2E-06 40.3 4.6 44 67-110 3-46 (274)
16 PF03402 V1R: Vomeronasal orga 93.1 0.25 5.3E-06 37.1 5.1 46 89-138 8-54 (265)
17 PF10317 7TM_GPCR_Srd: Serpent 90.5 0.6 1.3E-05 35.2 4.8 49 63-111 4-53 (292)
18 PF10321 7TM_GPCR_Srt: Serpent 89.9 1.5 3.3E-05 33.6 6.6 54 56-109 31-84 (313)
19 KOG4564|consensus 64.0 73 0.0016 26.1 8.5 54 62-115 149-202 (473)
20 PF09882 DUF2109: Predicted me 61.5 23 0.0005 21.4 4.0 48 68-115 4-51 (78)
21 PF00002 7tm_2: 7 transmembran 58.0 7.5 0.00016 28.0 1.9 43 67-109 10-52 (242)
22 PF11446 DUF2897: Protein of u 47.3 22 0.00049 20.0 2.3 20 63-82 7-26 (55)
23 PF10316 7TM_GPCR_Srbc: Serpen 46.7 1E+02 0.0022 23.2 6.4 58 61-118 9-66 (273)
24 PF01102 Glycophorin_A: Glycop 43.7 27 0.00058 23.1 2.6 17 71-87 76-93 (122)
25 TIGR01477 RIFIN variant surfac 40.5 35 0.00076 26.8 3.1 30 61-90 311-340 (353)
26 PTZ00046 rifin; Provisional 37.8 41 0.0009 26.5 3.2 30 61-90 316-345 (358)
27 PF10327 7TM_GPCR_Sri: Serpent 35.6 84 0.0018 23.8 4.5 60 58-117 9-72 (303)
28 PF02009 Rifin_STEVOR: Rifin/s 35.4 30 0.00064 26.6 2.0 29 61-89 257-285 (299)
29 PF10323 7TM_GPCR_Srv: Serpent 34.4 1.7E+02 0.0036 21.9 5.9 36 75-110 12-51 (283)
30 PF10873 DUF2668: Protein of u 30.7 49 0.0011 22.7 2.2 29 59-87 63-91 (155)
31 KOG2927|consensus 30.6 91 0.002 24.6 3.9 19 113-131 243-263 (372)
32 PF15330 SIT: SHP2-interacting 30.5 88 0.0019 20.1 3.3 29 59-87 2-30 (107)
33 PF02532 PsbI: Photosystem II 25.3 1.1E+02 0.0024 15.6 2.7 16 60-75 11-26 (36)
34 PF10326 7TM_GPCR_Str: Serpent 24.5 59 0.0013 24.3 2.0 45 66-110 7-52 (307)
35 PF05393 Hum_adeno_E3A: Human 23.5 92 0.002 19.5 2.3 10 84-93 57-66 (94)
36 PF12606 RELT: Tumour necrosis 22.2 1.5E+02 0.0034 16.3 3.1 13 62-74 5-17 (50)
37 PF10329 DUF2417: Region of un 21.2 2.1E+02 0.0045 21.2 4.2 40 70-109 82-121 (232)
38 PHA03012 hypothetical protein; 20.1 2.1E+02 0.0046 20.8 4.0 65 71-135 42-106 (279)
No 1
>KOG4219|consensus
Probab=99.73 E-value=6.9e-18 Score=129.22 Aligned_cols=88 Identities=25% Similarity=0.432 Sum_probs=80.0
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHhhhHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccc
Q psy5474 49 GPQFPAYIRTPSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMG 128 (138)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~i~~~g~~GN~lvl~~i~~~~~l~~~~~~fl~nLa~aDl~~~~~~~P~~~~~~~~~~~~w~~g 128 (138)
....+.+.+.++.++|+++.+++++||.+|+|++..+|++|+.+|+||+|||+||++.++++.|+...+... ..|.||
T Consensus 27 ~f~lp~~~~~~wai~yg~l~~vAv~GN~iVlwIil~hrrMRtvtnyfL~NLAfADl~~s~Fn~~f~f~yal~--~~W~~G 104 (423)
T KOG4219|consen 27 LFVLPAWQQALWAIAYGLLVFVAVVGNLIVLWIILAHRRMRTVTNYFLVNLAFADLSMSIFNTVFNFQYALH--QEWYFG 104 (423)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHhcCceEEEEEeehhehhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHH--hccccc
Confidence 456666678889999999999999999999999999999999999999999999999999999998876644 589999
Q ss_pred cccccccccC
Q psy5474 129 EHMWKMAEMM 138 (138)
Q Consensus 129 ~~~C~~~~~~ 138 (138)
.++|++..|+
T Consensus 105 ~f~C~f~nf~ 114 (423)
T KOG4219|consen 105 SFYCRFVNFF 114 (423)
T ss_pred cceeeecccc
Confidence 9999999874
No 2
>PHA03234 DNA packaging protein UL33; Provisional
Probab=99.63 E-value=8e-16 Score=118.03 Aligned_cols=78 Identities=14% Similarity=0.251 Sum_probs=65.3
Q ss_pred hhHHHHHHHHHHHHHHHhhhHHhhhHh--hcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccc
Q psy5474 56 IRTPSMVLCSIILCIGVLGNIMVPCVI--LKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHMWK 133 (138)
Q Consensus 56 ~~~~~~~~~~~i~~~g~~GN~lvl~~i--~~~~~l~~~~~~fl~nLa~aDl~~~~~~~P~~~~~~~~~~~~w~~g~~~C~ 133 (138)
.+..++++|.+++++|++||++|++++ .+++++|+++|+|+.|||+||++++++ +|+...+. .+.|+||+.+||
T Consensus 31 ~~~~~~~~y~~vf~~gl~gN~lvl~v~~~~~~~~~rt~tn~fi~NLAvaDLL~~l~-lp~~~~~~---~~~w~fG~~lCk 106 (338)
T PHA03234 31 AQILESAINGIMLTLIIPMIIIVICTLIIYHKVAKHNATSFYLITLFASDFLHMLC-VFFLTLNR---EALFNFNQAFCQ 106 (338)
T ss_pred HHHHhhHHHHHHHHHHhhhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHH-HHHHHHHH---hCCccCchhHHH
Confidence 566789999999999999999999844 456677999999999999999999765 67666533 347999999999
Q ss_pred cccc
Q psy5474 134 MAEM 137 (138)
Q Consensus 134 ~~~~ 137 (138)
+.++
T Consensus 107 ~~~~ 110 (338)
T PHA03234 107 CVLF 110 (338)
T ss_pred HHHH
Confidence 8765
No 3
>PHA02638 CC chemokine receptor-like protein; Provisional
Probab=99.42 E-value=1.7e-12 Score=102.22 Aligned_cols=77 Identities=25% Similarity=0.551 Sum_probs=65.1
Q ss_pred hhHHHHHHHHHHHHHHHhhhHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccccc
Q psy5474 56 IRTPSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHMWKMA 135 (138)
Q Consensus 56 ~~~~~~~~~~~i~~~g~~GN~lvl~~i~~~~~l~~~~~~fl~nLa~aDl~~~~~~~P~~~~~~~~~~~~w~~g~~~C~~~ 135 (138)
....+.++|.+++++|++||++|++++. +|++|+++|+++.|||++|+++.. .+|+++.+. .+.|.||+.+||+.
T Consensus 97 ~~~~l~~~y~lvfvlgliGN~LVl~il~-~k~lrt~t~i~llnLAisDLl~~l-~lPf~i~~~---~~~W~fg~~~Ck~~ 171 (417)
T PHA02638 97 ISEYIKIFYIIIFILGLFGNAAIIMILF-CKKIKTITDIYIFNLAISDLIFVI-DFPFIIYNE---FDQWIFGDFMCKVI 171 (417)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH-hccCCCHhHHHHHHHHHHHHHHHH-HHHHHHHHH---hccccccccchhhH
Confidence 4457788999999999999999998765 478899999999999999999764 689987644 25799999999986
Q ss_pred cc
Q psy5474 136 EM 137 (138)
Q Consensus 136 ~~ 137 (138)
.+
T Consensus 172 ~~ 173 (417)
T PHA02638 172 SA 173 (417)
T ss_pred HH
Confidence 53
No 4
>PHA02834 chemokine receptor-like protein; Provisional
Probab=99.40 E-value=9.3e-13 Score=100.35 Aligned_cols=77 Identities=22% Similarity=0.491 Sum_probs=63.7
Q ss_pred hhHHHHHHHHHHHHHHHhhhHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccccc
Q psy5474 56 IRTPSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHMWKMA 135 (138)
Q Consensus 56 ~~~~~~~~~~~i~~~g~~GN~lvl~~i~~~~~l~~~~~~fl~nLa~aDl~~~~~~~P~~~~~~~~~~~~w~~g~~~C~~~ 135 (138)
.+.++.+++.+++++|++||+++++++.++|+ ++++|+|+.|||++|++. ...+|+.+... .+.|.+|+..||+.
T Consensus 27 ~~~~~~~~~~li~v~~~~gN~lVi~vi~~~~~-~~~~n~~i~nLAiaDll~-~~~lP~~i~~~---~~~w~~g~~~C~~~ 101 (323)
T PHA02834 27 VNYFVIVFYILLFIFGLIGNVLVIAVLIVKRF-MFVVDVYLFNIAMSDLML-VFSFPFIIHND---LNEWIFGEFMCKLV 101 (323)
T ss_pred hhhhHHHHHHHHHHHHHhhHHHHHHHHHhccc-cchhhhhhHHHHHHHHHH-HHHHHHHHHHH---cCCcCCcchHHHhH
Confidence 45678899999999999999999998877665 457899999999999986 55789876543 24699999999986
Q ss_pred cc
Q psy5474 136 EM 137 (138)
Q Consensus 136 ~~ 137 (138)
++
T Consensus 102 ~~ 103 (323)
T PHA02834 102 LG 103 (323)
T ss_pred HH
Confidence 54
No 5
>KOG4220|consensus
Probab=99.35 E-value=1.1e-13 Score=106.71 Aligned_cols=77 Identities=18% Similarity=0.273 Sum_probs=70.2
Q ss_pred hHHHHHHHHHHHHHHHhhhHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccccc
Q psy5474 57 RTPSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHMWKMA 135 (138)
Q Consensus 57 ~~~~~~~~~~i~~~g~~GN~lvl~~i~~~~~l~~~~~~fl~nLa~aDl~~~~~~~P~~~~~~~~~~~~w~~g~~~C~~~ 135 (138)
...+.++-.++.++.++||++|++.+..+|+||+..|||+++||+|||+.+.+.+|+...|... +.|++|..+|.+.
T Consensus 30 ~v~i~~v~~~lsLVTv~GNlLVmiSfKvnrqLqTVnNYfLfSLAcADliIG~~SMnl~t~Y~lm--g~W~LG~~~CdlW 106 (503)
T KOG4220|consen 30 VVFIVVVTGSLSLVTVVGNLLVMISFKVNRQLQTVNNYFLFSLACADLIIGAFSMNLYTTYTLM--GYWPLGPLVCDLW 106 (503)
T ss_pred EEeeehhhhHHHHHhhhccEEEEEEEEecceeeeecceeehHHHHhhhhhheeechHHHHHHHH--cccccchHHHHHH
Confidence 3456778889999999999999999999999999999999999999999999999999987754 6999999999875
No 6
>PHA03235 DNA packaging protein UL33; Provisional
Probab=99.25 E-value=2.8e-11 Score=95.15 Aligned_cols=78 Identities=18% Similarity=0.299 Sum_probs=59.0
Q ss_pred hhHHHHHHHHHHHHHHHhhhHHhhhHhhcCCCC--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccc
Q psy5474 56 IRTPSMVLCSIILCIGVLGNIMVPCVILKSKDM--RNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHMWK 133 (138)
Q Consensus 56 ~~~~~~~~~~~i~~~g~~GN~lvl~~i~~~~~l--~~~~~~fl~nLa~aDl~~~~~~~P~~~~~~~~~~~~w~~g~~~C~ 133 (138)
.+....+++.+++++|++||++|++++.++++. ++..++|+.|||++|++. ++.+|+.+.. ....|.+|+..||
T Consensus 31 ~~~~~~~~~~li~vvGiigN~lVL~~~~~~~r~~~~~~~~~~I~NLAvsDLl~-l~~lP~~i~~---~~~~~~~g~~~Ck 106 (409)
T PHA03235 31 ARTTETFINLLIISVGGPLNLIVLVTQLLANRVHGFSTPTLYMTNLYLANLLT-VFVLPFIMLS---NQGLLSGSVAGCK 106 (409)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCccHHHHHHHHHHHHHH-HHHHHHHHHh---cCccccCCCCeeh
Confidence 556789999999999999999999875433332 356689999999999986 5578987642 2223445689999
Q ss_pred cccc
Q psy5474 134 MAEM 137 (138)
Q Consensus 134 ~~~~ 137 (138)
+.++
T Consensus 107 ~~~~ 110 (409)
T PHA03235 107 FASL 110 (409)
T ss_pred hHHH
Confidence 8765
No 7
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional
Probab=99.24 E-value=2.3e-11 Score=92.68 Aligned_cols=78 Identities=28% Similarity=0.511 Sum_probs=65.5
Q ss_pred hhHHHHHHHHHHHHHHHhhhHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccccc
Q psy5474 56 IRTPSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHMWKMA 135 (138)
Q Consensus 56 ~~~~~~~~~~~i~~~g~~GN~lvl~~i~~~~~l~~~~~~fl~nLa~aDl~~~~~~~P~~~~~~~~~~~~w~~g~~~C~~~ 135 (138)
.+.+..+++.+++++|++||+++++++.++ ++|++.|+++.|||++|++.++. .|...... ..+.|.+|+..|++.
T Consensus 39 ~~~~~~~~~~~i~~~gl~gN~lvl~~~~~~-~~~~~~~~ll~~laisDll~~~~-~~~~~~~~--~~~~~~~~~~~C~~~ 114 (335)
T PHA03087 39 NSTILIVVYSTIFFFGLVGNIIVIYVLTKT-KIKTPMDIYLLNLAVSDLLFVMT-LPFQIYYY--ILFQWSFGEFACKIV 114 (335)
T ss_pred hhhHHHHHHHHHHHHHHHhhHhEEeeehhc-cccCchHHHHHHHHHHHHHHHHh-HHHHHHHH--hCCCCCCCcHHHHHH
Confidence 556788899999999999999999998877 88999999999999999987664 77766433 346899999999987
Q ss_pred cc
Q psy5474 136 EM 137 (138)
Q Consensus 136 ~~ 137 (138)
.+
T Consensus 115 ~~ 116 (335)
T PHA03087 115 SG 116 (335)
T ss_pred HH
Confidence 64
No 8
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....
Probab=98.94 E-value=7.1e-10 Score=79.56 Aligned_cols=62 Identities=37% Similarity=0.682 Sum_probs=54.0
Q ss_pred hhHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccccccc
Q psy5474 74 GNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHMWKMAEM 137 (138)
Q Consensus 74 GN~lvl~~i~~~~~l~~~~~~fl~nLa~aDl~~~~~~~P~~~~~~~~~~~~w~~g~~~C~~~~~ 137 (138)
||+++++++.++|++|++.++|+.|||++|++.++...|..+..... +.|.+|+..|++..+
T Consensus 1 GN~lvi~~~~~~~~~~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~--~~~~~~~~~C~~~~~ 62 (257)
T PF00001_consen 1 GNILVILVILRSKRLRTPSNILLLNLAVADLLVGLFCIPFYIYSLLF--DDWIFSSFLCRIFGF 62 (257)
T ss_dssp HHHHHHHHHHHSGGG-SHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH--SSCTSHHHHHHHHHH
T ss_pred CchhehhhhhhhccCCChhHHHHHHHHHHHHhhcccccccccccccc--ccccccccccccccc
Confidence 89999999999999999999999999999999999888887765543 589999999998754
No 9
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=98.18 E-value=7.9e-07 Score=65.95 Aligned_cols=48 Identities=33% Similarity=0.606 Sum_probs=44.3
Q ss_pred HHHHhhhHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5474 69 CIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLV 116 (138)
Q Consensus 69 ~~g~~GN~lvl~~i~~~~~l~~~~~~fl~nLa~aDl~~~~~~~P~~~~ 116 (138)
++|++||..++.++.++|++|+|+++++..+|++|++.....+|....
T Consensus 2 ~ig~~gN~~~i~~~~~~~~Lrs~~~~li~~~~~~d~~~~~~~~~~~~~ 49 (257)
T PF10320_consen 2 IIGLFGNLLLIILIFRNKSLRSPCYILICILCFADLICLLGTLPFMLF 49 (257)
T ss_pred EEEEEccHHHHHHHHhccccccchHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 468999999999999999999999999999999999999888887764
No 10
>KOG2087|consensus
Probab=97.31 E-value=6.5e-05 Score=57.81 Aligned_cols=74 Identities=19% Similarity=0.203 Sum_probs=52.6
Q ss_pred HHHHHHHHHhhhHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----Ccccccccccccccc
Q psy5474 64 CSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKP-----ETWQMGEHMWKMAEM 137 (138)
Q Consensus 64 ~~~i~~~g~~GN~lvl~~i~~~~~l~~~~~~fl~nLa~aDl~~~~~~~P~~~~~~~~~~-----~~w~~g~~~C~~~~~ 137 (138)
--++.++++.||.+|++.....+...+...++++|||++|++.++...-...++..... .-|=-+...|++.+|
T Consensus 31 vW~i~~lAi~gN~~Vl~~~~~~~~~~~~~~~li~~la~ad~~mGiYl~~ia~vD~~~~gey~~~ai~W~tg~gC~~aGf 109 (363)
T KOG2087|consen 31 VWVIALLAIVGNLLVLLTRFTSRYELNSHRFLICNLAFADLLMGIYLGLIASVDAKTRGEYYKHAIDWQTGLGCPVAGF 109 (363)
T ss_pred hhhhhhHHhccCeeeeeeeeehhhhccchHHHHHHHHHHHHHcchHHHHHHHhhHHHHHHHHHHHHhhhhcCCCchHHH
Confidence 34567789999999999888777777889999999999999988754444444332211 112234567988776
No 11
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.
Probab=96.24 E-value=0.019 Score=41.21 Aligned_cols=51 Identities=12% Similarity=0.092 Sum_probs=36.4
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccC
Q psy5474 86 KDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHMWKMAEMM 138 (138)
Q Consensus 86 ~~l~~~~~~fl~nLa~aDl~~~~~~~P~~~~~~~~~~~~w~~g~~~C~~~~~~ 138 (138)
+++|...+-++.||.++|++.++..+....... .++.-.-++..|..++|+
T Consensus 30 ~r~~~fR~~LIl~L~~aD~~qal~~~i~~~~~l--~~~~i~~~s~~C~aqGf~ 80 (201)
T PF11710_consen 30 YRRRSFRHQLILNLLLADFIQALAFLISPIRWL--ARGGIIAPSPFCQAQGFF 80 (201)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCeeCCCCchhhhHHH
Confidence 556778888999999999999987655333333 233444567899988763
No 12
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].
Probab=96.11 E-value=0.015 Score=44.06 Aligned_cols=51 Identities=31% Similarity=0.413 Sum_probs=41.9
Q ss_pred HHHHHHhhhHHhhhHhhcCCCCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5474 67 ILCIGVLGNIMVPCVILKSKDMRN-STNIFLMNLSIADLMVLLVCTPTVLVEV 118 (138)
Q Consensus 67 i~~~g~~GN~lvl~~i~~~~~l~~-~~~~fl~nLa~aDl~~~~~~~P~~~~~~ 118 (138)
+.++|+++|++-+.++ .+|.+|+ +.|.++.-+|++|++.....++..+...
T Consensus 6 ~~~~g~~~N~~h~~VL-trk~mR~~~in~~l~~Iai~Dl~~~~~~~~~~~~~~ 57 (318)
T PF10324_consen 6 LSIFGLFINIFHLIVL-TRKSMRSSSINILLIGIAICDLLYMLSILIWELFFF 57 (318)
T ss_pred EeHHHHHHHHHHhhhc-CChhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568999999887765 6677887 8999999999999999988888766443
No 13
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs). TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane
Probab=95.46 E-value=0.093 Score=39.93 Aligned_cols=60 Identities=17% Similarity=0.263 Sum_probs=44.6
Q ss_pred hhHHHHHHHHHHHHHHHhhhHHhhhHhh---cCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5474 56 IRTPSMVLCSIILCIGVLGNIMVPCVIL---KSKDMRNSTNIFLMNLSIADLMVLLVCTPTVL 115 (138)
Q Consensus 56 ~~~~~~~~~~~i~~~g~~GN~lvl~~i~---~~~~l~~~~~~fl~nLa~aDl~~~~~~~P~~~ 115 (138)
.+....++..+.+++|++||+.++.+-. +++|.-.|.+..+.+||++.++.-....-...
T Consensus 5 ~~~i~~~i~~~~~~~Gi~~N~FI~~vn~~~w~k~~~l~~~d~IL~~La~sr~~l~~~~~~~~~ 67 (303)
T PF05296_consen 5 LEIIFLIILVVEFIIGILGNGFIVLVNCSDWVKSRKLSPSDQILTSLAISRILLQWVILLNSF 67 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788899999999999998765543 23333459999999999999987765443333
No 14
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor
Probab=95.43 E-value=0.042 Score=41.92 Aligned_cols=73 Identities=15% Similarity=0.213 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHhhhHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccccccc
Q psy5474 59 PSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHMWKMAEM 137 (138)
Q Consensus 59 ~~~~~~~~i~~~g~~GN~lvl~~i~~~~~l~~~~~~fl~nLa~aDl~~~~~~~P~~~~~~~~~~~~w~~g~~~C~~~~~ 137 (138)
.+.++..+...++++|-++++....+.|++|++.+-++.-++++|++.....+..... . .-.-++..|++++|
T Consensus 8 ~~~~i~~~~s~lSllGclfiI~tf~~~k~~r~~~~rli~yl~~~~ll~~v~~~~~~~~----~--~~~~~s~lC~~Qaf 80 (303)
T PF05462_consen 8 TLYAIELVASVLSLLGCLFIIITFCLFKRLRKPINRLIFYLSIANLLTNVASMIMTLS----P--SAGENSFLCQFQAF 80 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHhc----c--cCCCCCcchhhHhH
Confidence 4556666778889999999999999999999999999999999999876544332221 1 11234677988775
No 15
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=94.85 E-value=0.055 Score=40.25 Aligned_cols=44 Identities=34% Similarity=0.514 Sum_probs=39.7
Q ss_pred HHHHHHhhhHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHH
Q psy5474 67 ILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVC 110 (138)
Q Consensus 67 i~~~g~~GN~lvl~~i~~~~~l~~~~~~fl~nLa~aDl~~~~~~ 110 (138)
+.++|++.|.++++.+.+.|++|++-+.+-.+.|++|.+.++..
T Consensus 3 ~s~~G~~~N~~v~~~~~~~~~~~~sF~~l~~~~a~~n~i~~~~~ 46 (274)
T PF10328_consen 3 ISIIGIILNWLVFIIIFKLKSLRNSFGILCASQAIANIIICLIF 46 (274)
T ss_pred eeHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHH
Confidence 45689999999999999999999999999999999999988753
No 16
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=93.06 E-value=0.25 Score=37.09 Aligned_cols=46 Identities=17% Similarity=0.291 Sum_probs=34.2
Q ss_pred CchHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCCccccccccccccccC
Q psy5474 89 RNSTNIFLMNLSIADLMVLLV-CTPTVLVEVNSKPETWQMGEHMWKMAEMM 138 (138)
Q Consensus 89 ~~~~~~fl~nLa~aDl~~~~~-~~P~~~~~~~~~~~~w~~g~~~C~~~~~~ 138 (138)
.+|.+..+.|||+++.++.++ ++|.... .. ..+ .|++..||+.-|+
T Consensus 8 ~kp~dlIl~hLa~aN~lvLl~rGip~~~~-~~-~~~--~~~d~gCK~v~Y~ 54 (265)
T PF03402_consen 8 LKPIDLILIHLALANILVLLSRGIPQTMA-FF-GWK--FFDDIGCKIVFYI 54 (265)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhhHHHHHH-Hh-hcc--cCCCceeeeeeee
Confidence 569999999999999988765 5675443 22 222 3799999988764
No 17
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].
Probab=90.52 E-value=0.6 Score=35.16 Aligned_cols=49 Identities=22% Similarity=0.409 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhhhHHhhhHhhcCC-CCCchHHHHHHHHHHHHHHHHHHHH
Q psy5474 63 LCSIILCIGVLGNIMVPCVILKSK-DMRNSTNIFLMNLSIADLMVLLVCT 111 (138)
Q Consensus 63 ~~~~i~~~g~~GN~lvl~~i~~~~-~l~~~~~~fl~nLa~aDl~~~~~~~ 111 (138)
++.+.+.+|+.-|+++++++.++. +.-+...+++.|-|+.|++.+....
T Consensus 4 ~~~~~~~~~~~~n~~Ll~~i~~~tp~~l~~~~~~l~~~~~~~~~~~~~~~ 53 (292)
T PF10317_consen 4 YHPIFFILGIILNILLLYLIIFKTPKSLRTYSILLLNTAIFDLISIISAF 53 (292)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788899999999887765443 3334678999999999999877644
No 18
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []. Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=89.94 E-value=1.5 Score=33.63 Aligned_cols=54 Identities=22% Similarity=0.172 Sum_probs=44.1
Q ss_pred hhHHHHHHHHHHHHHHHhhhHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHH
Q psy5474 56 IRTPSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLV 109 (138)
Q Consensus 56 ~~~~~~~~~~~i~~~g~~GN~lvl~~i~~~~~l~~~~~~fl~nLa~aDl~~~~~ 109 (138)
.+..+++.+.+..++-.+-....+.++.++++.|.+.|-...=|++.|++....
T Consensus 31 ~~p~~G~~~~~~g~~~~~lY~p~~~~i~~~~~~k~~~ykiM~~L~i~Di~~l~~ 84 (313)
T PF10321_consen 31 KRPILGIYFLIFGIIIIILYIPCLIAIFKKKLFKMSCYKIMFFLAIFDIIQLFI 84 (313)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHh
Confidence 445677777777777777788888888887777899999999999999997654
No 19
>KOG4564|consensus
Probab=64.00 E-value=73 Score=26.14 Aligned_cols=54 Identities=13% Similarity=0.164 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhhhHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5474 62 VLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVL 115 (138)
Q Consensus 62 ~~~~~i~~~g~~GN~lvl~~i~~~~~l~~~~~~fl~nLa~aDl~~~~~~~P~~~ 115 (138)
++|.+-+-++++.=++.+.++...|++|-..|+.-.||-++=++-+...+-...
T Consensus 149 ~lytvGyslSl~sL~vAl~If~~FR~L~CtRn~IH~nLF~SfiLra~~~~i~~~ 202 (473)
T KOG4564|consen 149 ILYTVGYSLSLVSLLVALIIFLYFRSLHCTRNYIHMNLFASFILRAASVLIKDL 202 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555545556667788899999999999999998887776544433
No 20
>PF09882 DUF2109: Predicted membrane protein (DUF2109); InterPro: IPR019214 This entry is found in various hypothetical archaeal proteins and has no known function.
Probab=61.50 E-value=23 Score=21.45 Aligned_cols=48 Identities=23% Similarity=0.406 Sum_probs=34.5
Q ss_pred HHHHHhhhHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5474 68 LCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVL 115 (138)
Q Consensus 68 ~~~g~~GN~lvl~~i~~~~~l~~~~~~fl~nLa~aDl~~~~~~~P~~~ 115 (138)
.+.|+++=..++-++..+.+.|+-.|.-..|.+++.++....--|+-.
T Consensus 4 ~i~g~Iai~~~iR~~~~~~r~~KL~yLnv~~F~iaalIaL~i~~P~g~ 51 (78)
T PF09882_consen 4 IIIGIIAILMAIRIFLTKSRARKLLYLNVINFAIAALIALYIKSPMGA 51 (78)
T ss_pred HHHHHHHHHHHHHHHHhHhHHHhhhHHHHHHHHHHHHHHHHhCCcHHH
Confidence 445666666666666677777888899999999998887765556543
No 21
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.
Probab=58.03 E-value=7.5 Score=27.98 Aligned_cols=43 Identities=16% Similarity=0.199 Sum_probs=1.1
Q ss_pred HHHHHHhhhHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHH
Q psy5474 67 ILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLV 109 (138)
Q Consensus 67 i~~~g~~GN~lvl~~i~~~~~l~~~~~~fl~nLa~aDl~~~~~ 109 (138)
-..+++++-.+.+......|++|+..+....||++++++..+.
T Consensus 10 g~~~Si~~ll~~i~~~~~~r~lr~~~~~i~~~l~~sll~~~~~ 52 (242)
T PF00002_consen 10 GCSLSIICLLLTIITYLLFRKLRSFRNKIHLNLCLSLLLANLS 52 (242)
T ss_dssp HHH----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhHHHHHHHHHH
Confidence 3344444544445444555778887888899999998886654
No 22
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=47.25 E-value=22 Score=20.04 Aligned_cols=20 Identities=25% Similarity=0.208 Sum_probs=11.6
Q ss_pred HHHHHHHHHHhhhHHhhhHh
Q psy5474 63 LCSIILCIGVLGNIMVPCVI 82 (138)
Q Consensus 63 ~~~~i~~~g~~GN~lvl~~i 82 (138)
+.+++.+--++||+.++---
T Consensus 7 lIIviVlgvIigNia~LK~s 26 (55)
T PF11446_consen 7 LIIVIVLGVIIGNIAALKYS 26 (55)
T ss_pred HHHHHHHHHHHhHHHHHHHh
Confidence 33444444457998887543
No 23
>PF10316 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemoreceptor Srbc ; InterPro: IPR019420 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. Srbc is a solo family amongst the superfamilies of chemoreceptors.
Probab=46.69 E-value=1e+02 Score=23.21 Aligned_cols=58 Identities=14% Similarity=0.059 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHhhhHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5474 61 MVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEV 118 (138)
Q Consensus 61 ~~~~~~i~~~g~~GN~lvl~~i~~~~~l~~~~~~fl~nLa~aDl~~~~~~~P~~~~~~ 118 (138)
..+-.+........|...++.+...|+.|++-..++--..+.|.+.+....+......
T Consensus 9 ~~i~i~~s~~~~~iN~~lL~~if~~Kk~kk~~l~LfY~Rf~~D~~~~~~~~~~~~~~~ 66 (273)
T PF10316_consen 9 SIIGIIFSIITCLINFYLLYSIFYSKKKKKPDLSLFYFRFAIDVFYGFSVFIYLIYYI 66 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccCCCCEEeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455566777899888888766664444444444457789999888766554433
No 24
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=43.68 E-value=27 Score=23.13 Aligned_cols=17 Identities=29% Similarity=0.544 Sum_probs=6.8
Q ss_pred HHhhhHHhh-hHhhcCCC
Q psy5474 71 GVLGNIMVP-CVILKSKD 87 (138)
Q Consensus 71 g~~GN~lvl-~~i~~~~~ 87 (138)
|++|=++.| ++++|.+|
T Consensus 76 GvIg~Illi~y~irR~~K 93 (122)
T PF01102_consen 76 GVIGIILLISYCIRRLRK 93 (122)
T ss_dssp HHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 444444444 44443333
No 25
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=40.52 E-value=35 Score=26.80 Aligned_cols=30 Identities=17% Similarity=0.302 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHhhhHHhhhHhhcCCCCCc
Q psy5474 61 MVLCSIILCIGVLGNIMVPCVILKSKDMRN 90 (138)
Q Consensus 61 ~~~~~~i~~~g~~GN~lvl~~i~~~~~l~~ 90 (138)
++.+.++.++-++--.++++++.|+||.+.
T Consensus 311 ~IiaSiIAIvvIVLIMvIIYLILRYRRKKK 340 (353)
T TIGR01477 311 PIIASIIAILIIVLIMVIIYLILRYRRKKK 340 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcch
Confidence 345566666666666677788888877543
No 26
>PTZ00046 rifin; Provisional
Probab=37.77 E-value=41 Score=26.48 Aligned_cols=30 Identities=13% Similarity=0.328 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHhhhHHhhhHhhcCCCCCc
Q psy5474 61 MVLCSIILCIGVLGNIMVPCVILKSKDMRN 90 (138)
Q Consensus 61 ~~~~~~i~~~g~~GN~lvl~~i~~~~~l~~ 90 (138)
++.++++.++-++--.++++++.|+||.+.
T Consensus 316 aIiaSiiAIvVIVLIMvIIYLILRYRRKKK 345 (358)
T PTZ00046 316 AIIASIVAIVVIVLIMVIIYLILRYRRKKK 345 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcch
Confidence 345556666666666677788888877543
No 27
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents Sri, which is part of the Str superfamily of chemoreceptors.
Probab=35.58 E-value=84 Score=23.84 Aligned_cols=60 Identities=20% Similarity=0.225 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHhhhHHhhhHh-hcCCCCCchHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q psy5474 58 TPSMVLCSIILCIGVLGNIMVPCVI-LKSKDMRNSTNIFLM---NLSIADLMVLLVCTPTVLVE 117 (138)
Q Consensus 58 ~~~~~~~~~i~~~g~~GN~lvl~~i-~~~~~l~~~~~~fl~---nLa~aDl~~~~~~~P~~~~~ 117 (138)
.++...|-++..+++.-|.+.++.+ .+.+++.+..|+++. ...+.|+-.+...-|..+..
T Consensus 9 ~~li~~~~~ig~iS~~~n~~~iyLi~fks~k~~~fry~ll~~Qi~~~l~di~~t~L~qpipLfP 72 (303)
T PF10327_consen 9 QWLINYYHIIGVISFILNSLGIYLIIFKSPKLDNFRYYLLYFQISCTLTDIHLTFLMQPIPLFP 72 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheeEEEecCCccchhhHHHHHHHHHHHhhhhhhhhccchhhcc
Confidence 3567788889999999999998765 456666776665553 33467988887766665543
No 28
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=35.36 E-value=30 Score=26.57 Aligned_cols=29 Identities=17% Similarity=0.323 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHhhhHHhhhHhhcCCCCC
Q psy5474 61 MVLCSIILCIGVLGNIMVPCVILKSKDMR 89 (138)
Q Consensus 61 ~~~~~~i~~~g~~GN~lvl~~i~~~~~l~ 89 (138)
++...++.++-++--.++|+.++|+||.+
T Consensus 257 ~I~aSiiaIliIVLIMvIIYLILRYRRKK 285 (299)
T PF02009_consen 257 AIIASIIAILIIVLIMVIIYLILRYRRKK 285 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555566777777777643
No 29
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=34.36 E-value=1.7e+02 Score=21.91 Aligned_cols=36 Identities=22% Similarity=0.442 Sum_probs=25.2
Q ss_pred hHHhhhHhhcCCC----CCchHHHHHHHHHHHHHHHHHHH
Q psy5474 75 NIMVPCVILKSKD----MRNSTNIFLMNLSIADLMVLLVC 110 (138)
Q Consensus 75 N~lvl~~i~~~~~----l~~~~~~fl~nLa~aDl~~~~~~ 110 (138)
-+.+++++.+.|+ .+++-+-.+.+-+++|++.....
T Consensus 12 y~~il~~l~~~r~~~~~~~~~Fy~l~~~~~iaDi~~~~~~ 51 (283)
T PF10323_consen 12 YIFILYCLLKLRKRSKTFKSTFYTLLIQHCIADILSMLFY 51 (283)
T ss_pred HHHHHHHHHHcccCccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444333 56899999999999999977653
No 30
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=30.67 E-value=49 Score=22.66 Aligned_cols=29 Identities=14% Similarity=0.312 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHhhhHHhhhHhhcCCC
Q psy5474 59 PSMVLCSIILCIGVLGNIMVPCVILKSKD 87 (138)
Q Consensus 59 ~~~~~~~~i~~~g~~GN~lvl~~i~~~~~ 87 (138)
+..++|.++|+.|+++-+.+....+.++.
T Consensus 63 IaGIVfgiVfimgvva~i~icvCmc~kn~ 91 (155)
T PF10873_consen 63 IAGIVFGIVFIMGVVAGIAICVCMCMKNS 91 (155)
T ss_pred eeeeehhhHHHHHHHHHHHHHHhhhhhcC
Confidence 45678889999998887766655544444
No 31
>KOG2927|consensus
Probab=30.55 E-value=91 Score=24.61 Aligned_cols=19 Identities=5% Similarity=0.010 Sum_probs=11.7
Q ss_pred HHHHHHhcC--CCcccccccc
Q psy5474 113 TVLVEVNSK--PETWQMGEHM 131 (138)
Q Consensus 113 ~~~~~~~~~--~~~w~~g~~~ 131 (138)
+.+.++... .+-|.|+...
T Consensus 243 F~I~~il~~g~~g~W~FPNL~ 263 (372)
T KOG2927|consen 243 FGITWILTGGKHGFWLFPNLT 263 (372)
T ss_pred HHHHHHHhCCCCceEeccchh
Confidence 334444555 6789987654
No 32
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=30.50 E-value=88 Score=20.14 Aligned_cols=29 Identities=7% Similarity=0.161 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHhhhHHhhhHhhcCCC
Q psy5474 59 PSMVLCSIILCIGVLGNIMVPCVILKSKD 87 (138)
Q Consensus 59 ~~~~~~~~i~~~g~~GN~lvl~~i~~~~~ 87 (138)
.+.+++.+..++.++.|++.-....+.++
T Consensus 2 ~Ll~il~llLll~l~asl~~wr~~~rq~k 30 (107)
T PF15330_consen 2 LLLGILALLLLLSLAASLLAWRMKQRQKK 30 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 34566777777777788776555544444
No 33
>PF02532 PsbI: Photosystem II reaction centre I protein (PSII 4.8 kDa protein); InterPro: IPR003686 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbI, which is tightly associated with the D1/D2 heterodimer in PSII. The function of PsbI is unknown, but it may be involved in the assembly, dimerisation or stabilisation of PSII dimers [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_i 3ARC_I 3A0B_i 3BZ2_I 3PRQ_I 3KZI_I 3PRR_I 2AXT_i 4FBY_I 1S5L_i ....
Probab=25.31 E-value=1.1e+02 Score=15.65 Aligned_cols=16 Identities=19% Similarity=0.453 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHhhh
Q psy5474 60 SMVLCSIILCIGVLGN 75 (138)
Q Consensus 60 ~~~~~~~i~~~g~~GN 75 (138)
..+++..+++.|.+.|
T Consensus 11 vV~ffv~LFifGflsn 26 (36)
T PF02532_consen 11 VVIFFVSLFIFGFLSN 26 (36)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHhccccCC
Confidence 3455556666666554
No 34
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class r (Str) from the Str superfamily [, ]. Almost a quarter (22.5%) of str and srj family genes and pseudogenes in C. elegans appear to have been newly formed by gene duplications since the species split [].
Probab=24.49 E-value=59 Score=24.33 Aligned_cols=45 Identities=13% Similarity=0.250 Sum_probs=29.8
Q ss_pred HHHHHHHhhhHHhhhHhhcCCCCCchH-HHHHHHHHHHHHHHHHHH
Q psy5474 66 IILCIGVLGNIMVPCVILKSKDMRNST-NIFLMNLSIADLMVLLVC 110 (138)
Q Consensus 66 ~i~~~g~~GN~lvl~~i~~~~~l~~~~-~~fl~nLa~aDl~~~~~~ 110 (138)
+.++++++.|.+.++++.++.+.+.-. .+++.-.|+.|+.++..-
T Consensus 7 ~~~~~s~~~N~~Li~Li~~~s~k~~G~Yk~Lm~~fs~~~i~fs~~~ 52 (307)
T PF10326_consen 7 IGFVLSLFLNSLLIYLILTKSPKSLGSYKYLMIYFSIFEIIFSILD 52 (307)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCEEEEEehhHHHHHHHHHHH
Confidence 456778899999998876544333322 344555678888887753
No 35
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=23.53 E-value=92 Score=19.45 Aligned_cols=10 Identities=30% Similarity=0.265 Sum_probs=5.6
Q ss_pred cCCCCCchHH
Q psy5474 84 KSKDMRNSTN 93 (138)
Q Consensus 84 ~~~~l~~~~~ 93 (138)
++||-|.|.|
T Consensus 57 kRkrsRrPIY 66 (94)
T PF05393_consen 57 KRKRSRRPIY 66 (94)
T ss_pred HhhhccCCcc
Confidence 4445566665
No 36
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=22.19 E-value=1.5e+02 Score=16.30 Aligned_cols=13 Identities=38% Similarity=0.925 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHhh
Q psy5474 62 VLCSIILCIGVLG 74 (138)
Q Consensus 62 ~~~~~i~~~g~~G 74 (138)
++..++++.|++|
T Consensus 5 ~iV~i~iv~~lLg 17 (50)
T PF12606_consen 5 LIVSIFIVMGLLG 17 (50)
T ss_pred HHHHHHHHHHHHH
Confidence 3344555555555
No 37
>PF10329 DUF2417: Region of unknown function (DUF2417); InterPro: IPR019431 This entry represents a family of fungal proteins with no known function. In some cases these proteins also contain an alpha/beta hydrolase fold (IPR000073 from INTERPRO).
Probab=21.16 E-value=2.1e+02 Score=21.17 Aligned_cols=40 Identities=20% Similarity=0.352 Sum_probs=21.5
Q ss_pred HHHhhhHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHH
Q psy5474 70 IGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLV 109 (138)
Q Consensus 70 ~g~~GN~lvl~~i~~~~~l~~~~~~fl~nLa~aDl~~~~~ 109 (138)
+++..|++.++.+....+.-...++.++-|-+.|++....
T Consensus 82 lsl~~~~~~L~Ff~vpS~~~r~l~~vl~~Lllvdlilil~ 121 (232)
T PF10329_consen 82 LSLITNLFNLWFFGVPSKLERILNIVLAGLLLVDLILILA 121 (232)
T ss_pred HHHHHHHHHHHheecCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555554444444445566666666666665443
No 38
>PHA03012 hypothetical protein; Provisional
Probab=20.15 E-value=2.1e+02 Score=20.76 Aligned_cols=65 Identities=12% Similarity=0.107 Sum_probs=45.4
Q ss_pred HHhhhHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccccc
Q psy5474 71 GVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHMWKMA 135 (138)
Q Consensus 71 g~~GN~lvl~~i~~~~~l~~~~~~fl~nLa~aDl~~~~~~~P~~~~~~~~~~~~w~~g~~~C~~~ 135 (138)
.+..|+.-+....-++..+..-.+|-.|+.=..+.-.-+.+|-.+.-+........+..++||..
T Consensus 42 nif~ni~kli~~id~ktk~kihkf~t~ninkl~~fk~ktllpcyialyyl~~d~iiln~~~cky~ 106 (279)
T PHA03012 42 NIFDNIIKLISKIDEKTKFKIHKFFTNNINKLHLFKIKTLLPCYIALYYLSEDKIILNAAGCKYI 106 (279)
T ss_pred HHHHHHHHHHHHhcccchhhhHHHHhcchhhhhhhhhhhhhHHHHHHHHHhhhhhhhhhcCccEE
Confidence 45668777766666776677778888888877776666678865543333335778999999853
Done!