RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5474
(138 letters)
>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family).
This family contains, amongst other G-protein-coupled
receptors (GCPRs), members of the opsin family, which
have been considered to be typical members of the
rhodopsin superfamily. They share several motifs, mainly
the seven transmembrane helices, GCPRs of the rhodopsin
superfamily. All opsins bind a chromophore, such as
11-cis-retinal. The function of most opsins other than
the photoisomerases is split into two steps: light
absorption and G-protein activation. Photoisomerases, on
the other hand, are not coupled to G-proteins - they are
thought to generate and supply the chromophore that is
used by visual opsins.
Length = 251
Score = 51.5 bits (124), Expect = 1e-08
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 80 CVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHMWK 133
VIL++K +R TNIFL+NL++ADL+ LL P L W G+ + K
Sbjct: 1 LVILRTKKLRTPTNIFLLNLAVADLLFLLTLPPWAL--YYLVGGDWPFGDALCK 52
>gnl|CDD|220692 pfam10324, 7TM_GPCR_Srw, Serpentine type 7TM GPCR chemoreceptor
Srw. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srw is a solo family
amongst the superfamilies of chemoreceptors.
Chemoperception is one of the central senses of soil
nematodes like C. elegans which are otherwise 'blind'
and 'deaf'. The genes encoding Srw do not appear to be
under as strong an adaptive evolutionary pressure as
those of Srz.
Length = 317
Score = 33.7 bits (78), Expect = 0.019
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 66 IILCIGVLGNIMVPCVILKSKDMR-NSTNIFLMNLSIADLMVLL 108
I+ IG + NI +IL K MR +S NI ++ ++I D++ +L
Sbjct: 5 ILSIIGFIINI-FHLIILTRKSMRTSSINIIMIGIAICDIITML 47
>gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein;
Provisional.
Length = 417
Score = 33.1 bits (75), Expect = 0.029
Identities = 22/85 (25%), Positives = 46/85 (54%), Gaps = 9/85 (10%)
Query: 50 PQFPAYIRTPSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLV 109
P YI+ + II +G+ GN + +IL K ++ T+I++ NL+I+D ++ ++
Sbjct: 95 PSISEYIK----IFYIIIFILGLFGNAAI-IMILFCKKIKTITDIYIFNLAISD-LIFVI 148
Query: 110 CTPTVLVEVNSKPETWQMGEHMWKM 134
P + + ++ + W G+ M K+
Sbjct: 149 DFPFI---IYNEFDQWIFGDFMCKV 170
>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like
protein; Provisional.
Length = 335
Score = 33.2 bits (76), Expect = 0.031
Identities = 17/48 (35%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
Query: 62 VLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLV 109
V+ S I G++GNI+V V+ K+K ++ +I+L+NL+++DL+ ++
Sbjct: 45 VVYSTIFFFGLVGNIIVIYVLTKTK-IKTPMDIYLLNLAVSDLLFVMT 91
>gnl|CDD|192535 pfam10320, 7TM_GPCR_Srsx, Serpentine type 7TM GPCR chemoreceptor
Srsx. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srsx is a solo family
amongst the superfamilies of chemoreceptors.
Chemoperception is one of the central senses of soil
nematodes like C. elegans which are otherwise 'blind'
and 'deaf'.
Length = 257
Score = 30.6 bits (70), Expect = 0.18
Identities = 11/41 (26%), Positives = 22/41 (53%)
Query: 68 LCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLL 108
IG+ GN+++ + K K +R+ + + +ADL+ L
Sbjct: 1 SVIGIFGNVIMIILTFKKKKLRSKCSYLICVQCLADLLCLS 41
>gnl|CDD|220695 pfam10328, 7TM_GPCR_Srx, Serpentine type 7TM GPCR chemoreceptor
Srx. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srx is part of the Srg
superfamily of chemoreceptors. Chemoperception is one of
the central senses of soil nematodes like C. elegans
which are otherwise 'blind' and 'deaf'.
Length = 275
Score = 30.6 bits (70), Expect = 0.20
Identities = 9/40 (22%), Positives = 22/40 (55%)
Query: 70 IGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLV 109
G++ N ++ + LK ++NS I N +I++ ++ +
Sbjct: 6 FGIILNWLIFYIFLKLPSLKNSFGILCANKAISNAIICTI 45
>gnl|CDD|165177 PHA02834, PHA02834, chemokine receptor-like protein; Provisional.
Length = 323
Score = 27.9 bits (62), Expect = 1.5
Identities = 12/48 (25%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 61 MVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLL 108
+V ++ G++GN++V V++ + M +++L N++++DLM++
Sbjct: 32 IVFYILLFIFGLIGNVLVIAVLIVKRFMF-VVDVYLFNIAMSDLMLVF 78
>gnl|CDD|221313 pfam11917, DUF3435, Protein of unknown function (DUF3435). This
family of proteins are functionally uncharacterized.
This protein is found in eukaryotes. Proteins in this
family are typically between 435 to 791 amino acids in
length. This family is related to pfam00589 suggesting
it may be an integrase enzyme.
Length = 418
Score = 26.9 bits (60), Expect = 4.1
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 52 FPAYIRTPSMVLCSIILCIGVL 73
P I PS+VLC + +G+L
Sbjct: 91 LPEIIFDPSLVLCPHVFLLGLL 112
>gnl|CDD|220690 pfam10321, 7TM_GPCR_Srt, Serpentine type 7TM GPCR chemoreceptor
Srt. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srt is a member of the
Srg superfamily of chemoreceptors. Chemoperception is
one of the central senses of soil nematodes like C.
elegans which are otherwise 'blind' and 'deaf'.
Length = 313
Score = 26.4 bits (59), Expect = 6.3
Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 56 IRTPSMVLCSIILCIGVLGNIM-VPC--VILKSKDMRNSTNIFLMNLSIADLMVLLVCT 111
I +L + L G++ I+ +PC ILK K ++ ++ L I D++ L + +
Sbjct: 28 IGVKRPILGAYFLVSGIIILILYIPCLIAILKKKLRKHPCYKIMLFLGIFDILALSINS 86
>gnl|CDD|216611 pfam01621, Fusion_gly_K, Cell fusion glycoprotein K. This protein
is probably an integral membrane bound glycoprotein that
is involved in viral fusion with the host cell.
Length = 337
Score = 26.2 bits (58), Expect = 6.9
Identities = 12/52 (23%), Positives = 23/52 (44%)
Query: 63 LCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTV 114
L + L G LG PC ++ ++ +F+ ++ +L+ LL P
Sbjct: 226 LAAQCLSAGTLGITFTPCALVYPLYVKIVAWVFVGAIAALELVSLLRPKPAK 277
>gnl|CDD|177574 PHA03278, PHA03278, envelope glycoprotein K; Provisional.
Length = 347
Score = 25.9 bits (57), Expect = 7.5
Identities = 14/70 (20%), Positives = 24/70 (34%), Gaps = 4/70 (5%)
Query: 63 LCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTV----LVEV 118
L + +G + VPC + + T IF+ + +L +LL P E
Sbjct: 226 LGAQCALMGTVSVFFVPCAAVYPLYFKIITGIFVGIVICLELSLLLYPGPARKKAMGGEA 285
Query: 119 NSKPETWQMG 128
+ M
Sbjct: 286 AERKGGRVMS 295
>gnl|CDD|150542 pfam09882, DUF2109, Predicted membrane protein (DUF2109). This
domain, found in various hypothetical archaeal proteins,
has no known function.
Length = 78
Score = 25.0 bits (55), Expect = 7.9
Identities = 18/78 (23%), Positives = 30/78 (38%), Gaps = 11/78 (14%)
Query: 65 SIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLV-------- 116
+ IG++ +M +L+ R + +MN IA L+ L + TP V
Sbjct: 1 IAEIIIGIIAILMALRALLERDRARKLLYLNVMNFGIAGLIALYIKTPMGAVAAAAYFIG 60
Query: 117 ---EVNSKPETWQMGEHM 131
E N+ T E +
Sbjct: 61 STIESNAIAHTIAEIEEI 78
>gnl|CDD|223119 COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase
[Nucleotide transport and metabolism].
Length = 162
Score = 25.3 bits (56), Expect = 9.8
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 20 TLAIGAAENASLL 32
T+AIG A NA+LL
Sbjct: 113 TVAIGNAANAALL 125
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.134 0.406
Gapped
Lambda K H
0.267 0.0728 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,637,455
Number of extensions: 560747
Number of successful extensions: 447
Number of sequences better than 10.0: 1
Number of HSP's gapped: 443
Number of HSP's successfully gapped: 25
Length of query: 138
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 51
Effective length of database: 7,078,804
Effective search space: 361019004
Effective search space used: 361019004
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.6 bits)