RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5474
(138 letters)
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide
receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A
2ksb_A
Length = 364
Score = 74.7 bits (184), Expect = 4e-17
Identities = 25/112 (22%), Positives = 42/112 (37%), Gaps = 2/112 (1%)
Query: 27 ENASLLNLTNSSFVPKINGFDDGPQFPAYIRTPSMVLCSIILCIGVLGNIMVPCVILKSK 86
+N ++ S + + PA+ ++I+ V+GN++V +IL K
Sbjct: 2 DNVLPVDSDLSPNISTNTSEPNQFVQPAWQIVLWAAAYTVIVVTSVVGNVVVMWIILAHK 61
Query: 87 DMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHMWKMAEMM 138
MR TN FL+NL+ A+ + T W G K
Sbjct: 62 RMRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVH--NEWYYGLFYCKFHNFF 111
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR
network, structural genomics, GPCR membrane 7TM NOP ORL1
cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo
sapiens}
Length = 434
Score = 74.5 bits (183), Expect = 7e-17
Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 8/101 (7%)
Query: 12 NLTSPDNWTLAIGAAENASLLNLTNSSFVPKINGFDDGPQFPAYIRTPSMVLCSIILCIG 71
L + A AAE L T ++++ G P ++ + L + G
Sbjct: 87 KLANEGKVKEAQAAAEQ---LKTTRNAYIQ----KYLGAFLPLGLKVTIVGLYLAVCVGG 139
Query: 72 VLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTP 112
+LGN +V VIL+ M+ +TNI++ NL++AD +VLL P
Sbjct: 140 LLGNCLVMYVILRHTKMKTATNIYIFNLALADTLVLL-TLP 179
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal
protei photoreceptor, signaling protein; HET: MAN NAG
BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2
PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A*
2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A*
1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A*
...
Length = 349
Score = 64.7 bits (158), Expect = 2e-13
Identities = 22/102 (21%), Positives = 39/102 (38%), Gaps = 10/102 (9%)
Query: 33 NLTNSSFVPKINGFDDGPQFPAYIRTPSMVLC---SIILCIGVLGNIMVPCVILKSKDMR 89
N T P + PQ+ +L +++ +G N + V ++ K +R
Sbjct: 16 NKTGVVRSP-----FEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLR 70
Query: 90 NSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHM 131
N L+NL++ADL ++ T L S + G
Sbjct: 71 TPLNYILLNLAVADLFMVFGGFTTTL--YTSLHGYFVFGPTG 110
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor,
lipid receptor, multiple sclerosi autoimmunity,
structural genomics, PSI-biology; HET: ML5 NAG; 2.80A
{Homo sapiens} PDB: 3v2w_A*
Length = 520
Score = 63.0 bits (152), Expect = 9e-13
Identities = 25/129 (19%), Positives = 52/129 (40%), Gaps = 6/129 (4%)
Query: 13 LTSPDNWTLAIGAAENASLLNLTNSSFVPK---INGFDDGPQFPAYIRTPSMVLCSIILC 69
+P ++ + A +S+ + N + + G + + V+ +I C
Sbjct: 16 AGAPGPTSVPLVKAHRSSVSDYVNYDIIVRHYNYTGKLNISADKENSIKLTSVVFILICC 75
Query: 70 IGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGE 129
+L NI V I K+K F+ NL+++DL+ + T +L+ T+++
Sbjct: 76 FIILENIFVLLTIWKTKKFHRPMYYFIGNLALSDLLAGVAYTANLLLSG---ATTYKLTP 132
Query: 130 HMWKMAEMM 138
W + E
Sbjct: 133 AQWFLREGS 141
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein
engineering, GPCR network, PSI-biology, struct genomics,
membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A
{Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A*
3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Length = 447
Score = 62.0 bits (150), Expect = 2e-12
Identities = 20/106 (18%), Positives = 41/106 (38%), Gaps = 7/106 (6%)
Query: 27 ENASLLNLTNSSFVPKINGFDDGPQFPAYIRTPSMVLCSIILCIGVLGNIMVPCVILKSK 86
+ L+ DDG V +I + +LGN++V + +
Sbjct: 2 KTIIALSYIFCLVFADYKDDDDGAPPIMGSSVYITVELAIAVLA-ILGNVLVCWAVWLNS 60
Query: 87 DMRNSTNIFLMNLSIADLMV-LLVCTPTVLVEVNSKPETWQMGEHM 131
+++N TN F+++L+ AD+ V +L + + + H
Sbjct: 61 NLQNVTNYFVVSLAAADIAVGVLAIPFAITIST-----GFCAACHG 101
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled
receptor, 7 transmembrane receptor, signal
protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A
{Mus musculus} PDB: 4ej4_A* 4djh_A*
Length = 464
Score = 61.9 bits (150), Expect = 2e-12
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 62 VLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSK 121
L SI+ +G+ GN +V VI++ M+ +TNI++ NL++AD + P V
Sbjct: 22 ALYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADALATS-TLPFQSVNYLMG 80
Query: 122 PETWQMGEHMWKM 134
TW G + K+
Sbjct: 81 --TWPFGNILCKI 91
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics,
PSI-2, protein structure initiative, AC technologies
center for gene to 3D structure; HET: ETQ MAL; 2.89A
{Homo sapiens}
Length = 481
Score = 61.3 bits (148), Expect = 4e-12
Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 4/107 (3%)
Query: 26 AENASLLNLTNSSFVPKINGFDDGPQFPAYIRTPSMVLCSIILCIGVLGNIMVPCVILKS 85
ASL L++ G ++ C++IL I V GN +V +LK
Sbjct: 8 GAPASLSQLSSHLNYTCGAENSTGASQARPHAYYALSYCALILAI-VFGNGLVCMAVLKE 66
Query: 86 KDMRNSTNIFLMNLSIADLMV-LLVCTPTVLVEVNSKPETWQMGEHM 131
+ ++ +TN +++L++ADL+V LV V +EV W
Sbjct: 67 RALQTTTNYLVVSLAVADLLVATLVMPWVVYLEVTG--GVWNFSRIC 111
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion,
lipidic cubic phase, lipidic, mesophase, cholesterol,
membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo
sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A*
3pds_A*
Length = 500
Score = 59.0 bits (142), Expect = 2e-11
Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 8/112 (7%)
Query: 22 AIGAAENAS-LLNLTNSSFVPKINGFDDGPQFPAYIRTPSMVLCSIILCIGVLGNIMVPC 80
A+G N S L N S P + + ++ +V+ I+L I V GN++V
Sbjct: 7 AMGQPGNGSAFLLAPNRSHAP--DHDVTQQRDEVWVVGMGIVMSLIVLAI-VFGNVLVIT 63
Query: 81 VILKSKDMRNSTNIFLMNLSIADLMV-LLVCTPTVLVEVNSKPETWQMGEHM 131
I K + ++ TN F+ +L+ ADL++ L V + W G
Sbjct: 64 AIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKM---WTFGNFW 112
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics,
PSI-biology, membrane protein, GPCR NET GPCR, hydrolase;
HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Length = 452
Score = 58.9 bits (142), Expect = 2e-11
Identities = 18/76 (23%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 60 SMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMV-LLVCTPTVLVEV 118
+VL +I L V N++V + + + N+++++LS+ADL+V +V +L +
Sbjct: 12 VVVLSTICLVT-VGLNLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMPMNILYLL 70
Query: 119 NSKPETWQMGEHMWKM 134
W +G +
Sbjct: 71 M---SKWSLGRPLCLF 83
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G
protein-coupled receptor, GPCR, SI protein-antagonist
complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Length = 467
Score = 58.2 bits (140), Expect = 4e-11
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 60 SMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMV-LLVCTPTVLVEV 118
+V S+ L ++GNI+V I ++ ++ N FL +L+ ADL++ + L V
Sbjct: 27 VLVAGSLSLVT-IIGNILVMVSIKVNRHLQTVNNYFLFSLACADLIIGVFSMNLYTLYTV 85
Query: 119 NSKPETWQMGEHMWKM 134
W +G + +
Sbjct: 86 I---GYWPLGPVVCDL 98
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural
genomics, PSI-2, protein structure initiative; HET: ITD
OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A*
3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Length = 502
Score = 57.6 bits (139), Expect = 6e-11
Identities = 16/47 (34%), Positives = 31/47 (65%)
Query: 62 VLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLL 108
+ SII G++GN +V V+ K +R+ T+ + ++LS+ADL+ ++
Sbjct: 53 TIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVI 99
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 57.2 bits (138), Expect = 9e-11
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 65 SIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPET 124
I IG GN +V + K+K ++ N+F++NL+ +D LV ++ ++ +
Sbjct: 42 GICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLMT-ISCFLKK 100
Query: 125 WQMGEHM 131
W G
Sbjct: 101 WIFGFAA 107
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR,
membrane protein, LCP, mesophase, structural genomics,
PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Length = 488
Score = 56.7 bits (136), Expect = 2e-10
Identities = 16/72 (22%), Positives = 35/72 (48%), Gaps = 7/72 (9%)
Query: 61 MVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMV-LLVCTPTVLVEVN 119
V +I + +LGN++V + + +++N TN F+++L+ AD+ V +L + +
Sbjct: 26 TVELAIAVLA-ILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITIST- 83
Query: 120 SKPETWQMGEHM 131
+ H
Sbjct: 84 ----GFCAACHG 91
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor,
nanobody, G protein-coupled RE GPCR, signal
transduction, G protein signaling; HET: P0G; 3.20A
{Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A
Length = 514
Score = 55.3 bits (133), Expect = 4e-10
Identities = 26/118 (22%), Positives = 43/118 (36%), Gaps = 8/118 (6%)
Query: 19 WTLAIGAAENASLLNLTNSSFVPKINGFDDGPQFPAYIRTPSMVLCSIILCIG----VLG 74
W A + N T + I F G +V I++ + V G
Sbjct: 140 WDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYAADEVWVVGMGIVMSLIVLAIVFG 199
Query: 75 NIMVPCVILKSKDMRNSTNIFLMNLSIADLMV-LLVCTPTVLVEVNSKPETWQMGEHM 131
N++V I K + ++ TN F+ +L+ ADL++ L V + W G
Sbjct: 200 NVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKT---WTFGNFW 254
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR
BETA1-adrenoceptor, stabilising mutat biased agonist;
HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A*
2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A*
2ycx_A* 2ycy_A* 2ycz_A*
Length = 315
Score = 49.0 bits (117), Expect = 5e-08
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Query: 60 SMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMV-LLVCTPTVLVEV 118
S+++ ++L I V GN++V I ++ ++ TN+F+ +L+ ADL+V LLV + V
Sbjct: 15 SLLMALVVLLI-VAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVV 73
Query: 119 NSKPETWQMGEHM 131
W G +
Sbjct: 74 RGT---WLWGSFL 83
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.4 bits (65), Expect = 0.38
Identities = 23/173 (13%), Positives = 52/173 (30%), Gaps = 73/173 (42%)
Query: 2 VSTTVQTILDNLTSPDN----WTLAIGAAENASLLNLTNSSFVPKINGFDDGPQFPAYIR 57
++T +++ L+ L + L++ FP
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSV----------------------------FPPSAH 386
Query: 58 TPSMVLCSIILCIGVLGN----IMVPCVILKS---KDMRNSTNIFLMNLSIADLMVLLVC 110
P+++L ++ V+ + ++ S K + ST +SI + + L
Sbjct: 387 IPTILLS--LIWFDVIKSDVMVVVNKLH-KYSLVEKQPKEST------ISIPSIYLELKV 437
Query: 111 TPT-------VLVEVNSKPETWQ----------------MGEHMWK--MAEMM 138
+V+ + P+T+ +G H+ E M
Sbjct: 438 KLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERM 490
Score = 26.4 bits (57), Expect = 4.4
Identities = 16/147 (10%), Positives = 36/147 (24%), Gaps = 47/147 (31%)
Query: 9 ILDNLTSPDNW--------TLAI----GAAENASLLNLTNSSFVPKINGFDDG---PQFP 53
+L N+ + W L + S T+ S
Sbjct: 249 VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308
Query: 54 AYIRTPSMVL----CSII-LCIGVLG----------------------NIMVPCV-ILKS 85
Y+ L + + ++ I+ + +L+
Sbjct: 309 KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368
Query: 86 KDMRN---STNIFLMNLSI-ADLMVLL 108
+ R ++F + I L+ L+
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILLSLI 395
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics,
joint center for structural genomics, J protein
structure initiative, PSI; 1.77A {Thermotoga maritima}
SCOP: c.23.8.1
Length = 183
Score = 24.9 bits (55), Expect = 9.3
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 20 TLAIGAAENASLL 32
T+AI A+NA +L
Sbjct: 124 TVAINNAKNAGIL 136
>3pbh_A Procathepsin B; thiol protease, cysteine protease, proenzyme,
papain; 2.50A {Homo sapiens} SCOP: d.3.1.1 PDB: 2pbh_A
1pbh_A 1mir_A
Length = 317
Score = 25.0 bits (55), Expect = 9.5
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 117 EVNSKPETWQMGEHMWKM 134
VN + TWQ G + + +
Sbjct: 17 YVNKRNTTWQAGHNFYNV 34
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta
protein, structural genomics, PSI-2, protein initiative;
1.70A {Mycobacterium tuberculosis}
Length = 174
Score = 24.9 bits (55), Expect = 9.7
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 20 TLAIGAAENASLL 32
T++IG A NA LL
Sbjct: 118 TVSIGGAGNAGLL 130
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.134 0.406
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,956,441
Number of extensions: 99631
Number of successful extensions: 139
Number of sequences better than 10.0: 1
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 21
Length of query: 138
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 54
Effective length of database: 4,356,429
Effective search space: 235247166
Effective search space used: 235247166
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.3 bits)