RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5474
         (138 letters)



>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
          Length = 348

 Score = 55.4 bits (132), Expect = 2e-10
 Identities = 18/110 (16%), Positives = 41/110 (37%), Gaps = 7/110 (6%)

Query: 32  LNLTNSSFVPKINGFDDGPQF---PAYIRTPSMVLCSIILCIGVLGNIMVPCVILKSKDM 88
           +  +N + V  +    + PQ+     +  +       +++ +G   N +   V ++ K +
Sbjct: 11  VPFSNKTGV--VRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKL 68

Query: 89  RNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHMWKMAEMM 138
           R   N  L+NL++ADL ++            S    +  G     +    
Sbjct: 69  RTPLNYILLNLAVADLFMVFGGFT--TTLYTSLHGYFVFGPTGCNLEGFF 116


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.134    0.406 

Gapped
Lambda     K      H
   0.267   0.0621    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 477,022
Number of extensions: 18659
Number of successful extensions: 34
Number of sequences better than 10.0: 1
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 7
Length of query: 138
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 62
Effective length of database: 1,364,116
Effective search space: 84575192
Effective search space used: 84575192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (22.5 bits)