BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy5478
         (1009 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q03755|CUT1_CAEEL Cuticlin-1 OS=Caenorhabditis elegans GN=cut-1 PE=2 SV=2
          Length = 424

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 62/266 (23%), Positives = 107/266 (40%), Gaps = 30/266 (11%)

Query: 1   MRVNIEFDRPFYGMIFSKGYYSDSHCVHLKPGTGHLSATFEIFLNSCGMSSSANHAVGGV 60
           + VN     PF G ++ KG Y  + C       G   A  E+  +SC      N A    
Sbjct: 38  ITVNFNTRNPFEGHVYVKGLYDQAGC--RSDEGGRQVAGIELPFDSC------NTARTRS 89

Query: 61  TTPSGSYVENTIIIQYDPYVQEVWDQARKLRCTWYDFYEKAVTFRPFQVDMLHAVTANFL 120
             P G +V  T++I + P      D+A +++C +Y   +K V+ +    D+  A     +
Sbjct: 90  LNPKGVFVSTTVVISFHPQFVTKVDRAYRIQC-FYMESDKTVSTQIEVSDLTTAFQTQVV 148

Query: 121 GDNLQCWMQIQVGKGPWASEVSGIVKIGQTMTMVLAIKDD-ENKFDMLVRNCVAHDGKRA 179
              + C  +I  G GP    +     IGQ +        +  + F  +V +C   DG   
Sbjct: 149 PMPV-CKYEILDG-GPSGQPIQ-FATIGQQVYHKWTCDSETTDTFCAVVHSCTVDDGNGD 205

Query: 180 PIQLVDQHGCVVRPKIMSKFQKIKNFGPSASVVSFAYFQAFKFPDSMNVHFQCVIQVCRY 239
            +Q++++ GC      + KF  + N      +++      +K+ D   + +QC I +   
Sbjct: 206 TVQILNEEGCA-----LDKF-LLNNLEYPTDLMAGQEAHVYKYADRSQLFYQCQISITIK 259

Query: 240 N----CPEPRCGGDYGAPQLGGGFGS 261
           +    C  P C      PQ   GFG+
Sbjct: 260 DPGSECARPTC----SEPQ---GFGA 278



 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 53/233 (22%), Positives = 94/233 (40%), Gaps = 28/233 (12%)

Query: 529 GHLSATFEIFLNSCGMSSSANHAVGGVTTPSGSYVENTIIIQYDPYVQEVWDQARKLRCT 588
           G   A  E+  +SC      N A      P G +V  T++I + P      D+A +++C 
Sbjct: 69  GRQVAGIELPFDSC------NTARTRSLNPKGVFVSTTVVISFHPQFVTKVDRAYRIQC- 121

Query: 589 WYDFYEKAVTFRPFQVDMLHAVTANFLGDNLQCWMQIQVGKGPWASEVSGIVKIGQTMTM 648
           +Y   +K V+ +    D+  A     +   + C  +I  G GP    +     IGQ +  
Sbjct: 122 FYMESDKTVSTQIEVSDLTTAFQTQVVPMPV-CKYEILDG-GPSGQPIQ-FATIGQQVYH 178

Query: 649 VLAIKDD-ENKFDMLVRNCVAHDGKRAPIQLVDQHGCVVRPKIMSKFQKIKNFGPSASVV 707
                 +  + F  +V +C   DG    +Q++++ GC      + KF  + N      ++
Sbjct: 179 KWTCDSETTDTFCAVVHSCTVDDGNGDTVQILNEEGCA-----LDKF-LLNNLEYPTDLM 232

Query: 708 SFAYFQAFKFPDSMNVHFQCVIQVCRYN----CPEPRCGGDYGAPQLGGGFGS 756
           +      +K+ D   + +QC I +   +    C  P C      PQ   GFG+
Sbjct: 233 AGQEAHVYKYADRSQLFYQCQISITIKDPGSECARPTC----SEPQ---GFGA 278


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.136    0.421 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 423,064,993
Number of Sequences: 539616
Number of extensions: 21204239
Number of successful extensions: 115634
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 947
Number of HSP's that attempted gapping in prelim test: 95486
Number of HSP's gapped (non-prelim): 13861
length of query: 1009
length of database: 191,569,459
effective HSP length: 128
effective length of query: 881
effective length of database: 122,498,611
effective search space: 107921276291
effective search space used: 107921276291
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)