Query psy5478
Match_columns 1009
No_of_seqs 294 out of 817
Neff 5.1
Searched_HMMs 46136
Date Fri Aug 16 18:33:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5478.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5478hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00241 ZP Zona pellucida ( 100.0 1.6E-33 3.5E-38 301.1 26.0 231 1-248 7-252 (253)
2 smart00241 ZP Zona pellucida ( 100.0 3.8E-31 8.2E-36 282.9 26.6 223 504-743 15-252 (253)
3 PF00100 Zona_pellucida: Zona 99.9 6.5E-26 1.4E-30 239.2 21.7 234 1-247 7-263 (265)
4 PF00100 Zona_pellucida: Zona 99.9 6.9E-24 1.5E-28 223.8 20.7 222 508-742 19-263 (265)
5 PF07172 GRP: Glycine rich pro 45.8 19 0.00041 34.5 2.9 23 957-979 6-28 (95)
6 KOG1924|consensus 40.4 1.7E+02 0.0037 37.6 10.4 29 382-419 605-633 (1102)
7 PF07172 GRP: Glycine rich pro 34.6 35 0.00076 32.7 2.8 23 462-484 6-28 (95)
8 PF07790 DUF1628: Protein of u 29.7 57 0.0012 29.6 3.3 24 958-981 7-30 (80)
9 PF05506 DUF756: Domain of unk 29.0 1.6E+02 0.0035 27.2 6.2 46 124-169 32-77 (89)
10 PF05506 DUF756: Domain of unk 28.8 1.7E+02 0.0037 27.0 6.4 46 619-664 32-77 (89)
11 PRK14758 hypothetical protein; 20.7 1.2E+02 0.0027 22.7 2.9 20 961-980 7-26 (27)
12 PF06084 Cytomega_TRL10: Cytom 20.2 61 0.0013 32.1 1.7 28 460-494 63-90 (150)
No 1
>smart00241 ZP Zona pellucida (ZP) domain. ZP proteins are responsible for sperm-adhesion fo the zona pellucida. ZP domains are also present in multidomain transmembrane proteins such as glycoprotein GP2, uromodulin and TGF-beta receptor type III (betaglycan).
Probab=100.00 E-value=1.6e-33 Score=301.11 Aligned_cols=231 Identities=24% Similarity=0.426 Sum_probs=190.2
Q ss_pred CEEEEEcCCCcccEEEecccCC-CCCCeeecCCCCceEEEEEEecCCCCccccccCCCCCccCCCceEEEEEEEEE-ecC
Q psy5478 1 MRVNIEFDRPFYGMIFSKGYYS-DSHCVHLKPGTGHLSATFEIFLNSCGMSSSANHAVGGVTTPSGSYVENTIIIQ-YDP 78 (1009)
Q Consensus 1 M~V~i~t~~PF~G~IYvKG~~~-dp~C~~~~~g~gsts~~F~Ipl~~CGt~r~~~~~~~~~~~p~Gv~ysntVVVQ-fHP 78 (1009)
|.|.|++..+|.|+||+++.+. |+.|+..+...+.+.+.|++++++||++++. ++.++.|+|+|+++ +|+
T Consensus 7 m~v~v~~~~~~~g~i~~~~l~l~d~~C~~~~~~~~~~~~~f~~~l~~CGt~~~~--------~~~~~~ysn~v~~~~~~~ 78 (253)
T smart00241 7 MVVSVSTDLLFPGGIYVKGLYLGDPSCRPVFTDSTSAFVSFEVPLNGCGTRRQV--------NPDGIVYSNTLVVSPFHP 78 (253)
T ss_pred EEEEEEecCCCCCeEEEeeEEeCCCCCCCccccCCCcEEEEEeccccCCCeEEE--------CCCeEEEEEEEEEccCCC
Confidence 8999999999999999999776 8999996445567899999999999999753 45689999999999 799
Q ss_pred ceeEeece-eEEEEEEecccccceeEeeeeeecccceeeee-ccCCCceEEEEEEeccCCCcccceeee--eeCcEEEEE
Q psy5478 79 YVQEVWDQ-ARKLRCTWYDFYEKAVTFRPFQVDMLHAVTAN-FLGDNLQCWMQIQVGKGPWASEVSGIV--KIGQTMTMV 154 (1009)
Q Consensus 79 ~~~T~~Dr-ay~V~C~y~~~~eKtVt~~p~~Vs~l~~~~~~-~~~~~p~C~M~I~~G~GP~g~pVs~~V--kVGq~L~~~ 154 (1009)
.++|..|+ .|+++|.|.. ..+ ++. .+.+..+....+. ...+.+.|+|+|+.+. .|++++.... +|||+|+|+
T Consensus 79 ~~itr~~~~~~~~~C~y~~-~~~-~~~-~~~~~~~~~~~~~~~~~g~~~~~m~l~~~~-~~~~~~~~~~~~~lg~~l~~~ 154 (253)
T smart00241 79 GFITRDDRAAYHFQCFYPE-NEK-VSL-NLDVSTIPPTELSSVSEGPPTCSYRLYKDD-SFGSPYQSADYPVLGDPVYHE 154 (253)
T ss_pred CceEecCceEEEEEEEEeC-CCc-eEE-EEEecCCCCCCcccccCCCcEEEEEeccCC-CCCCcccCCCCcccCCeEEEE
Confidence 99999999 9999999975 223 333 3444444322221 1245689999999975 5887775332 799999999
Q ss_pred EEEecC-CCcccEEEeEEEEEcCC----CCcEEEEecCCCccCccccccceeeccCCCCcceEEEEEEeeEEcCCCCeEE
Q psy5478 155 LAIKDD-ENKFDMLVRNCVAHDGK----RAPIQLVDQHGCVVRPKIMSKFQKIKNFGPSASVVSFAYFQAFKFPDSMNVH 229 (1009)
Q Consensus 155 w~c~~~-~~~y~m~V~sCvA~Dg~----g~~iqLIDenGC~lD~~Im~~f~y~~n~~~sas~va~a~f~AFKFpDs~~V~ 229 (1009)
|+++.. ++.|+|+|++|||+++. +.++.||| +||++|+.+++...|..+. +..+++.|+||||+++..||
T Consensus 155 ~~~~~~~~~~~~l~v~~C~at~~~~~~~~~~~~lI~-~GC~~d~~~~~~~~~~~~~----~~~~~f~~~aF~F~~~~~v~ 229 (253)
T smart00241 155 WSCDGADDPPLGLLVDNCYATPGSDPSSGPKYFIID-NGCPVDGYLDSTIPYNSSP----NHYARFSVKVFKFADRSLVY 229 (253)
T ss_pred EEEccCCCCCeEEEEeeEEEcCCCCCCCCCcEEEEE-CccCCCCccccceecCCCC----cceEEEEEEEEEecCCCcEE
Confidence 999975 79999999999999987 58899999 9999999888888887651 24789999999999999999
Q ss_pred EEEEEEEccC----CCCCCCCCC
Q psy5478 230 FQCVIQVCRY----NCPEPRCGG 248 (1009)
Q Consensus 230 FqC~V~IC~~----~Cppp~Cs~ 248 (1009)
|||+|++|.+ .|..+.|+.
T Consensus 230 ~hC~v~vC~~~~~~~C~~~~C~~ 252 (253)
T smart00241 230 FHCQIRLCDKSDGSSCDGPACSS 252 (253)
T ss_pred EEEEEEEECCCCCCCCCCCcCCC
Confidence 9999999986 587668864
No 2
>smart00241 ZP Zona pellucida (ZP) domain. ZP proteins are responsible for sperm-adhesion fo the zona pellucida. ZP domains are also present in multidomain transmembrane proteins such as glycoprotein GP2, uromodulin and TGF-beta receptor type III (betaglycan).
Probab=100.00 E-value=3.8e-31 Score=282.92 Aligned_cols=223 Identities=22% Similarity=0.378 Sum_probs=179.1
Q ss_pred cCCCeeEEEeeeec-CCCCeeecCCCCeeEEEEEEecCCCcCccccccccCCccCCCccEEEEEEEEE-ecCceEEeecc
Q psy5478 504 FDPAEFVKVTRYYS-DSHCVHLKPGTGHLSATFEIFLNSCGMSSSANHAVGGVTTPSGSYVENTIIIQ-YDPYVQEVWDQ 581 (1009)
Q Consensus 504 Fd~~~~VyvKG~~~-Dp~Cr~~~~~tg~~sv~F~Ipl~~CGt~~~~~~~~~~~~~p~Gi~ysntVVVQ-~HP~~iT~~Dr 581 (1009)
..+.+.+++++.+. |+.|+......+.+.+.|++++++||++++. ++.+++|+|+|+++ .|+.++|..|+
T Consensus 15 ~~~~g~i~~~~l~l~d~~C~~~~~~~~~~~~~f~~~l~~CGt~~~~--------~~~~~~ysn~v~~~~~~~~~itr~~~ 86 (253)
T smart00241 15 LLFPGGIYVKGLYLGDPSCRPVFTDSTSAFVSFEVPLNGCGTRRQV--------NPDGIVYSNTLVVSPFHPGFITRDDR 86 (253)
T ss_pred CCCCCeEEEeeEEeCCCCCCCccccCCCcEEEEEeccccCCCeEEE--------CCCeEEEEEEEEEccCCCCceEecCc
Confidence 44556689999777 8999996434677899999999999999753 56789999999999 79999999999
Q ss_pred -eEEEEeEecccccceEEeeceeecccceeeee-eccCCceEEEEEEecCCCCCcceeeeE--eeCcEEEEEEEEecC-C
Q psy5478 582 -ARKLRCTWYDFYEKAVTFRPFQVDMLHAVTAN-FLGDNLQCWMQIQVGKGPWASEVSGIV--KIGQTMTMVLAIKDD-E 656 (1009)
Q Consensus 582 -ay~VrC~y~~~~eKtVt~~p~~Vd~l~~vt~~-~~~~~P~C~M~I~~g~GP~g~pVs~~V--kVGq~L~h~w~c~~~-~ 656 (1009)
.|+++|.|... .+ ++. .+.+..+....+. ...+.+.|+|+|+++. .++.++.... +|||+|||+|+++.. +
T Consensus 87 ~~~~~~C~y~~~-~~-~~~-~~~~~~~~~~~~~~~~~g~~~~~m~l~~~~-~~~~~~~~~~~~~lg~~l~~~~~~~~~~~ 162 (253)
T smart00241 87 AAYHFQCFYPEN-EK-VSL-NLDVSTIPPTELSSVSEGPPTCSYRLYKDD-SFGSPYQSADYPVLGDPVYHEWSCDGADD 162 (253)
T ss_pred eEEEEEEEEeCC-Cc-eEE-EEEecCCCCCCcccccCCCcEEEEEeccCC-CCCCcccCCCCcccCCeEEEEEEEccCCC
Confidence 99999999753 23 332 2444443322111 2245689999999975 5777775422 799999999999974 7
Q ss_pred CcccEEEeEEEEEcCC----CCcEEEEecCCCccCccccccceeeccCCCCceeEEEEEeeeeEcCCCCeEEEEEEEEEc
Q psy5478 657 NKFDMLVRNCVAHDGK----RAPIQLVDQHGCVVRPKIMSKFQKIKNFGPSASVVSFAYFQAFKFPDSMNVHFQCVIQVC 732 (1009)
Q Consensus 657 ~~y~m~V~sC~A~Dg~----g~~~~LIDenGCslD~~Im~~f~y~~n~g~~as~~a~a~F~AFKFPDs~~V~FqC~V~lC 732 (1009)
..|+|+|++|||+++. +.++.||| +||++|+.+++...|..+. +..+++.|+||||+++..|||||+|++|
T Consensus 163 ~~~~l~v~~C~at~~~~~~~~~~~~lI~-~GC~~d~~~~~~~~~~~~~----~~~~~f~~~aF~F~~~~~v~~hC~v~vC 237 (253)
T smart00241 163 PPLGLLVDNCYATPGSDPSSGPKYFIID-NGCPVDGYLDSTIPYNSSP----NHYARFSVKVFKFADRSLVYFHCQIRLC 237 (253)
T ss_pred CCeEEEEeeEEEcCCCCCCCCCcEEEEE-CccCCCCccccceecCCCC----cceEEEEEEEEEecCCCcEEEEEEEEEE
Confidence 8999999999999997 57899999 9999999998888887641 2478999999999999999999999999
Q ss_pred cC----CCCCCCCCC
Q psy5478 733 RY----NCPEPRCGG 743 (1009)
Q Consensus 733 ~~----~C~pp~Cs~ 743 (1009)
.+ .|..+.|+.
T Consensus 238 ~~~~~~~C~~~~C~~ 252 (253)
T smart00241 238 DKSDGSSCDGPACSS 252 (253)
T ss_pred CCCCCCCCCCCcCCC
Confidence 86 687678864
No 3
>PF00100 Zona_pellucida: Zona pellucida-like domain; InterPro: IPR001507 A large domain, containing around 260 amino acids, has been recognised in a variety of receptor-like eukaryotic glycoproteins []. All of these proteins are mosaic proteins composed of various domains and that all have a large extracellular region followed by either a transmembrane region and a very short cytoplasmic region or by a GPI-anchor. The domain common to all these proteins is located in the C-terminal portion of the extracellular region, and contains 8 conserved Cys residues, which are probably involved in disulphide bond formation. This entry includes a domain found in the zona pellucida proteins. The zona pellucida is a specialised extracellular matrix of mammailian eggs, which plays a crucial role in fertilisation by directly mediating species-restricted recongition between gametes. In mammals, up to four zona pellucida subnits are known, named ZP1-4. The full-length crystal structure of murine ZP3 has been solved []. This entry is also found in other glycoproteins, such as CD105 (also called endoglin) which is the regulatory component of the TGF-beta receptor complex. It is a modulator of cellular responses to TGF-beta 1. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; PDB: 3D4G_G 3EF7_A 3D4C_A 3NK4_B 3NK3_B 3QW9_A.
Probab=99.94 E-value=6.5e-26 Score=239.17 Aligned_cols=234 Identities=24% Similarity=0.414 Sum_probs=156.2
Q ss_pred CEEEEEcCCCcccEEEe-cccCCCCCCeeecCCCCceEEEEEEecCC--CCccccccCCCCCccCCCceEEEEEEEEEec
Q psy5478 1 MRVNIEFDRPFYGMIFS-KGYYSDSHCVHLKPGTGHLSATFEIFLNS--CGMSSSANHAVGGVTTPSGSYVENTIIIQYD 77 (1009)
Q Consensus 1 M~V~i~t~~PF~G~IYv-KG~~~dp~C~~~~~g~gsts~~F~Ipl~~--CGt~r~~~~~~~~~~~p~Gv~ysntVVVQfH 77 (1009)
|+|.|++..+|.|.||+ +++..++.|+... ..+.+.+.|+++++. ||+++..+. ..++.|+|+|+++.+
T Consensus 7 ~~v~i~~~~~~~~~i~~~~~~~~~~~C~~~~-~~~~~~~~~~~~~~~~~Cg~~~~~~~-------~~~~~y~n~i~~~~~ 78 (265)
T PF00100_consen 7 MTVTIKKDYLFTGNIYVSDLHLNDPSCRARS-DTNSTHITFSIPFNSPSCGTTRSIEN-------GDSIVYSNTIVSSQD 78 (265)
T ss_dssp EEEEEESSTTSSS-B-GGGEEETTTTB--EE-ECTTTEEEEEEECCC--CTSEEEE---------SSEEEEEEEEEEE--
T ss_pred EEEEEEeccccCCCEEeeeeEECCCCCCCcc-cCCCcEEEEEEecCCCCCcccccccc-------cCcceeeeeeeeecc
Confidence 78999999999999988 7788889999922 335678999999999 999987642 234889999999876
Q ss_pred C--------ceeEeeceeEEEEEEecccccceeEeeeeeecccceeeeeccCCCceEEEEEEeccCCCcc---cceeeee
Q psy5478 78 P--------YVQEVWDQARKLRCTWYDFYEKAVTFRPFQVDMLHAVTANFLGDNLQCWMQIQVGKGPWAS---EVSGIVK 146 (1009)
Q Consensus 78 P--------~~~T~~Dray~V~C~y~~~~eKtVt~~p~~Vs~l~~~~~~~~~~~p~C~M~I~~G~GP~g~---pVs~~Vk 146 (1009)
. .+++..|..|.++|.|.. ...++..........+.............+|+++.+. .+.. .-...++
T Consensus 79 ~~~~~~~~~~i~~~~~~~~~~~C~y~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~l~~~~-~~~~~~~~~~~~~~ 156 (265)
T PF00100_consen 79 VSFNDSPGGNITRDSDRRFNFTCTYSS-SQYSVSSGSPNISSVTIHISQESSGSFSFSMRLYKDD-SFSSPYSQPPATVE 156 (265)
T ss_dssp SSSS---STTECSSS-EEEEEEEEE-E-C------------B-TTT---STT--EEEEEEEESTT-TSSCB---SSEEE-
T ss_pred ccccccccCceEEecccccccEEEECC-ccceeccccccceeccccceeccCCccceEEEeccCc-cccccccCCceeEE
Confidence 4 566678999999999921 2233322211111111111111234467888888754 2332 1123689
Q ss_pred eCcEEEEEEEEecCC-CcccEEEeEEEEEcC----CCCcEEEEecCCCccCccccccceeeccCCCCcceEEEEEEeeEE
Q psy5478 147 IGQTMTMVLAIKDDE-NKFDMLVRNCVAHDG----KRAPIQLVDQHGCVVRPKIMSKFQKIKNFGPSASVVSFAYFQAFK 221 (1009)
Q Consensus 147 VGq~L~~~w~c~~~~-~~y~m~V~sCvA~Dg----~g~~iqLIDenGC~lD~~Im~~f~y~~n~~~sas~va~a~f~AFK 221 (1009)
+||.|+++|+++.+. ..+.|+|++|||+++ .+..+.|||++||++|...+..+.+....+ .+..+++.|+|||
T Consensus 157 vg~~v~~~v~~~~~~~~~~~~~v~~C~a~~~~~~~~~~~~~lId~~GC~~~~~~~~~~~~~~~~~--~~~~~~f~f~aF~ 234 (265)
T PF00100_consen 157 VGDRVYVEVSVSPDSSDPLGLFVDSCWATPSSDPDSSPSYTLIDENGCPVDSDDFVTFEYSGPNG--DSSRARFSFRAFR 234 (265)
T ss_dssp TT-EEEEEEEEEECCC-TEEEEEEEEEEESSSSTTSSSCEEEEBCTTEEGGGCTTTEEEEETTTC--CCCEEEEEEE-EE
T ss_pred eeeeEEEEEEeccccceeeEEEeCEEEEeCCCCcccccccceeccccccccccceeEEEeccccc--cccEEEEEeeEEE
Confidence 999999999987653 227899999999999 567899999999999999988888761111 1236888999999
Q ss_pred cCCCCeEEEEEEEEEccCC----CCCCCCC
Q psy5478 222 FPDSMNVHFQCVIQVCRYN----CPEPRCG 247 (1009)
Q Consensus 222 FpDs~~V~FqC~V~IC~~~----Cppp~Cs 247 (1009)
|++...|+|+|+|++|... |++ .|+
T Consensus 235 f~~~~~v~i~C~v~~C~~~~~~~C~~-~C~ 263 (265)
T PF00100_consen 235 FPDSSSVYIHCSVRVCDKSDGSSCPP-NCS 263 (265)
T ss_dssp ETSSSEEEEEEEEEEEETTSSCTTBB--EE
T ss_pred ecCCCeEEEEEEEEEECCCCCCcCCC-CCC
Confidence 9999999999999999876 555 564
No 4
>PF00100 Zona_pellucida: Zona pellucida-like domain; InterPro: IPR001507 A large domain, containing around 260 amino acids, has been recognised in a variety of receptor-like eukaryotic glycoproteins []. All of these proteins are mosaic proteins composed of various domains and that all have a large extracellular region followed by either a transmembrane region and a very short cytoplasmic region or by a GPI-anchor. The domain common to all these proteins is located in the C-terminal portion of the extracellular region, and contains 8 conserved Cys residues, which are probably involved in disulphide bond formation. This entry includes a domain found in the zona pellucida proteins. The zona pellucida is a specialised extracellular matrix of mammailian eggs, which plays a crucial role in fertilisation by directly mediating species-restricted recongition between gametes. In mammals, up to four zona pellucida subnits are known, named ZP1-4. The full-length crystal structure of murine ZP3 has been solved []. This entry is also found in other glycoproteins, such as CD105 (also called endoglin) which is the regulatory component of the TGF-beta receptor complex. It is a modulator of cellular responses to TGF-beta 1. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; PDB: 3D4G_G 3EF7_A 3D4C_A 3NK4_B 3NK3_B 3QW9_A.
Probab=99.92 E-value=6.9e-24 Score=223.80 Aligned_cols=222 Identities=23% Similarity=0.398 Sum_probs=142.7
Q ss_pred eeEEE-eeeecCCCCeeecCCCCeeEEEEEEecCC--CcCccccccccCCccCCCccEEEEEEEEEecC--------ceE
Q psy5478 508 EFVKV-TRYYSDSHCVHLKPGTGHLSATFEIFLNS--CGMSSSANHAVGGVTTPSGSYVENTIIIQYDP--------YVQ 576 (1009)
Q Consensus 508 ~~Vyv-KG~~~Dp~Cr~~~~~tg~~sv~F~Ipl~~--CGt~~~~~~~~~~~~~p~Gi~ysntVVVQ~HP--------~~i 576 (1009)
+.++. ++++.++.|+... ..+...+.|+++++. ||+....+. ..++.|+|+|+++.+. .++
T Consensus 19 ~~i~~~~~~~~~~~C~~~~-~~~~~~~~~~~~~~~~~Cg~~~~~~~-------~~~~~y~n~i~~~~~~~~~~~~~~~i~ 90 (265)
T PF00100_consen 19 GNIYVSDLHLNDPSCRARS-DTNSTHITFSIPFNSPSCGTTRSIEN-------GDSIVYSNTIVSSQDVSFNDSPGGNIT 90 (265)
T ss_dssp S-B-GGGEEETTTTB--EE-ECTTTEEEEEEECCC--CTSEEEE---------SSEEEEEEEEEEE--SSSS---STTEC
T ss_pred CCEEeeeeEECCCCCCCcc-cCCCcEEEEEEecCCCCCcccccccc-------cCcceeeeeeeeeccccccccccCceE
Confidence 34554 7888999999921 345678899999999 999987642 2348899999998654 566
Q ss_pred EeecceEEEEeEecccccceEEeeceeecccceeeeeeccCCceEEEEEEecCCCCCc---ceeeeEeeCcEEEEEEEEe
Q psy5478 577 EVWDQARKLRCTWYDFYEKAVTFRPFQVDMLHAVTANFLGDNLQCWMQIQVGKGPWAS---EVSGIVKIGQTMTMVLAIK 653 (1009)
Q Consensus 577 T~~Dray~VrC~y~~~~eKtVt~~p~~Vd~l~~vt~~~~~~~P~C~M~I~~g~GP~g~---pVs~~VkVGq~L~h~w~c~ 653 (1009)
+..|..|.++|.|.. ....+........................+|+++.+. .+.. .-...+++||+|+++|+++
T Consensus 91 ~~~~~~~~~~C~y~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~l~~~~-~~~~~~~~~~~~~~vg~~v~~~v~~~ 168 (265)
T PF00100_consen 91 RDSDRRFNFTCTYSS-SQYSVSSGSPNISSVTIHISQESSGSFSFSMRLYKDD-SFSSPYSQPPATVEVGDRVYVEVSVS 168 (265)
T ss_dssp SSS-EEEEEEEEE-E-C------------B-TTT---STT--EEEEEEEESTT-TSSCB---SSEEE-TT-EEEEEEEEE
T ss_pred EecccccccEEEECC-ccceeccccccceeccccceeccCCccceEEEeccCc-cccccccCCceeEEeeeeEEEEEEec
Confidence 678999999999921 2233322111111111111111233456888888754 1221 1122689999999999987
Q ss_pred cCC-CcccEEEeEEEEEcC----CCCcEEEEecCCCccCccccccceeeccCCCCceeEEEEEeeeeEcCCCCeEEEEEE
Q psy5478 654 DDE-NKFDMLVRNCVAHDG----KRAPIQLVDQHGCVVRPKIMSKFQKIKNFGPSASVVSFAYFQAFKFPDSMNVHFQCV 728 (1009)
Q Consensus 654 ~~~-~~y~m~V~sC~A~Dg----~g~~~~LIDenGCslD~~Im~~f~y~~n~g~~as~~a~a~F~AFKFPDs~~V~FqC~ 728 (1009)
... ..+.|+|++|||+++ .+..+.|||++||++|...+..+.+....+ .+..+++.|+||||++...|||+|+
T Consensus 169 ~~~~~~~~~~v~~C~a~~~~~~~~~~~~~lId~~GC~~~~~~~~~~~~~~~~~--~~~~~~f~f~aF~f~~~~~v~i~C~ 246 (265)
T PF00100_consen 169 PDSSDPLGLFVDSCWATPSSDPDSSPSYTLIDENGCPVDSDDFVTFEYSGPNG--DSSRARFSFRAFRFPDSSSVYIHCS 246 (265)
T ss_dssp ECCC-TEEEEEEEEEEESSSSTTSSSCEEEEBCTTEEGGGCTTTEEEEETTTC--CCCEEEEEEE-EEETSSSEEEEEEE
T ss_pred cccceeeEEEeCEEEEeCCCCcccccccceeccccccccccceeEEEeccccc--cccEEEEEeeEEEecCCCeEEEEEE
Confidence 543 227899999999999 467899999999999999998888761111 1237889999999999999999999
Q ss_pred EEEccCC----CCCCCCC
Q psy5478 729 IQVCRYN----CPEPRCG 742 (1009)
Q Consensus 729 V~lC~~~----C~pp~Cs 742 (1009)
|++|... |++ .|+
T Consensus 247 v~~C~~~~~~~C~~-~C~ 263 (265)
T PF00100_consen 247 VRVCDKSDGSSCPP-NCS 263 (265)
T ss_dssp EEEEETTSSCTTBB--EE
T ss_pred EEEECCCCCCcCCC-CCC
Confidence 9999886 555 564
No 5
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=45.80 E-value=19 Score=34.50 Aligned_cols=23 Identities=30% Similarity=0.275 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhe
Q psy5478 957 FVAGLAMLLAVLVVACLVAAFLF 979 (1009)
Q Consensus 957 f~~~~~~~~~~~~~~~~~~~~~~ 979 (1009)
|+++.++|+++|+|||-|||-=+
T Consensus 6 ~llL~l~LA~lLlisSevaa~~~ 28 (95)
T PF07172_consen 6 FLLLGLLLAALLLISSEVAAREL 28 (95)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHh
Confidence 56666677788889998888544
No 6
>KOG1924|consensus
Probab=40.41 E-value=1.7e+02 Score=37.61 Aligned_cols=29 Identities=31% Similarity=0.416 Sum_probs=15.3
Q ss_pred cccccCchhhccccccccccceeehhccccccccccce
Q psy5478 382 RSVEIFPDELRGARRRRDTILHVYKREAQEMTDVNTSR 419 (1009)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (1009)
-+++.+|.-+.-+ .+||-+.. |.-.|.+.
T Consensus 605 pmaPvlP~gLkpK--------K~~k~e~~-Mrr~nW~k 633 (1102)
T KOG1924|consen 605 PMAPVLPFGLKPK--------KVYKPEVP-MRRFNWSK 633 (1102)
T ss_pred cccccCCCCCCcc--------ccCCCCCc-cccCCccc
Confidence 3566777555432 34555554 55555555
No 7
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=34.65 E-value=35 Score=32.74 Aligned_cols=23 Identities=30% Similarity=0.275 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHHHHHHHhhheee
Q psy5478 462 FVAGLAMLLAVLVVACLVAAFLF 484 (1009)
Q Consensus 462 f~~~~~~~~~~l~~s~l~a~~l~ 484 (1009)
|+.+.++|+++|+||+-+++.-+
T Consensus 6 ~llL~l~LA~lLlisSevaa~~~ 28 (95)
T PF07172_consen 6 FLLLGLLLAALLLISSEVAAREL 28 (95)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHh
Confidence 56666667778888888887544
No 8
>PF07790 DUF1628: Protein of unknown function (DUF1628); InterPro: IPR012859 The sequences making up this family are derived from hypothetical proteins of unknown function expressed by various archaeal species. The region in question is approximately 160 residues long.
Probab=29.70 E-value=57 Score=29.62 Aligned_cols=24 Identities=21% Similarity=0.466 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHheee
Q psy5478 958 VAGLAMLLAVLVVACLVAAFLFVR 981 (1009)
Q Consensus 958 ~~~~~~~~~~~~~~~~~~~~~~~r 981 (1009)
++.+.|++++++++++|++|+|--
T Consensus 7 iGviLliaitVilaavv~~~~~~~ 30 (80)
T PF07790_consen 7 IGVILLIAITVILAAVVGAFVFGL 30 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 466778888888899999999876
No 9
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=29.00 E-value=1.6e+02 Score=27.24 Aligned_cols=46 Identities=13% Similarity=0.097 Sum_probs=33.5
Q ss_pred ceEEEEEEeccCCCcccceeeeeeCcEEEEEEEEecCCCcccEEEe
Q psy5478 124 LQCWMQIQVGKGPWASEVSGIVKIGQTMTMVLAIKDDENKFDMLVR 169 (1009)
Q Consensus 124 p~C~M~I~~G~GP~g~pVs~~VkVGq~L~~~w~c~~~~~~y~m~V~ 169 (1009)
-.+.++|.......+.+....|.-|+++.+.|.+..+.+-||+.|+
T Consensus 32 ~~~~~~v~~~~y~~~~~~~~~v~ag~~~~~~w~l~~s~gwYDl~v~ 77 (89)
T PF05506_consen 32 AAVTFTVYDNAYGGGGPWTYTVAAGQTVSLTWPLAASGGWYDLTVT 77 (89)
T ss_pred CcEEEEEEeCCcCCCCCEEEEECCCCEEEEEEeecCCCCcEEEEEE
Confidence 4566777763222234556678999999999999777899998876
No 10
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=28.77 E-value=1.7e+02 Score=27.02 Aligned_cols=46 Identities=13% Similarity=0.097 Sum_probs=33.6
Q ss_pred ceEEEEEEecCCCCCcceeeeEeeCcEEEEEEEEecCCCcccEEEe
Q psy5478 619 LQCWMQIQVGKGPWASEVSGIVKIGQTMTMVLAIKDDENKFDMLVR 664 (1009)
Q Consensus 619 P~C~M~I~~g~GP~g~pVs~~VkVGq~L~h~w~c~~~~~~y~m~V~ 664 (1009)
-.+.++|.......+.+....|.-|+++.+.|.+....+-||+.|+
T Consensus 32 ~~~~~~v~~~~y~~~~~~~~~v~ag~~~~~~w~l~~s~gwYDl~v~ 77 (89)
T PF05506_consen 32 AAVTFTVYDNAYGGGGPWTYTVAAGQTVSLTWPLAASGGWYDLTVT 77 (89)
T ss_pred CcEEEEEEeCCcCCCCCEEEEECCCCEEEEEEeecCCCCcEEEEEE
Confidence 3567777763322233455579999999999999777789998886
No 11
>PRK14758 hypothetical protein; Provisional
Probab=20.69 E-value=1.2e+02 Score=22.72 Aligned_cols=20 Identities=25% Similarity=0.670 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHhee
Q psy5478 961 LAMLLAVLVVACLVAAFLFV 980 (1009)
Q Consensus 961 ~~~~~~~~~~~~~~~~~~~~ 980 (1009)
|=++|+++|+-+|+|+.++.
T Consensus 7 FEliLivlIlCalia~~fy~ 26 (27)
T PRK14758 7 FEFILIILILCALIAARFYL 26 (27)
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 44567778888888887653
No 12
>PF06084 Cytomega_TRL10: Cytomegalovirus TRL10 protein; InterPro: IPR009284 This family consists of several Cytomegalovirus TRL10 proteins. TRL10 represents a structural component of the virus particle and like the other HCMV envelope glycoproteins, is present in a disulphide-linked complex [].
Probab=20.18 E-value=61 Score=32.14 Aligned_cols=28 Identities=32% Similarity=0.618 Sum_probs=20.0
Q ss_pred chhHHHHHHHHHHHHHHHHhhheeeeEeEEecCCC
Q psy5478 460 PSFVAGLAMLLAVLVVACLVAAFLFVRVRSLDAKG 494 (1009)
Q Consensus 460 ~~f~~~~~~~~~~l~~s~l~a~~l~~rvr~~~~Kg 494 (1009)
-+|+|+||+||.++.| ++-|-|.-+..|
T Consensus 63 gsfiatliillviffv-------iy~re~~~~~~g 90 (150)
T PF06084_consen 63 GSFIATLIILLVIFFV-------IYSREEEKNNNG 90 (150)
T ss_pred chHHHHHHHHHHHhhe-------eEeccccccCCC
Confidence 4699999999988876 455666555544
Done!