Query psy5478
Match_columns 1009
No_of_seqs 294 out of 817
Neff 5.1
Searched_HMMs 29240
Date Fri Aug 16 18:34:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5478.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5478hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nk4_A ZONA pellucida 3; ferti 99.8 8.3E-19 2.8E-23 191.9 19.6 212 514-743 33-265 (297)
2 3nk4_A ZONA pellucida 3; ferti 99.8 2.8E-18 9.7E-23 187.7 20.5 211 20-248 34-265 (297)
3 3qw9_A Transforming growth fac 99.3 3.9E-11 1.3E-15 122.6 14.8 119 618-741 4-132 (176)
4 3qw9_A Transforming growth fac 99.2 1.4E-10 4.8E-15 118.5 15.0 112 123-240 4-127 (176)
5 2l2t_A Receptor tyrosine-prote 54.0 6.4 0.00022 31.6 2.1 34 953-988 8-42 (44)
6 2ks1_B Epidermal growth factor 50.6 6.2 0.00021 31.6 1.6 36 952-988 8-43 (44)
7 2jwa_A Receptor tyrosine-prote 43.0 12 0.00039 30.1 2.0 33 953-987 10-42 (44)
8 1zza_A Stannin, AG8_1; helix, 26.3 37 0.0013 30.0 2.6 44 953-996 10-54 (90)
9 1iij_A ERBB-2 receptor protein 25.2 12 0.00041 28.7 -0.6 27 953-980 6-32 (35)
10 1iij_A ERBB-2 receptor protein 21.2 18 0.00061 27.7 -0.3 27 458-485 6-32 (35)
No 1
>3nk4_A ZONA pellucida 3; fertilization, oocyte, egg coat, vitelline E ZP domain, ZP module, egg-sperm interaction, species-specif recognition, speciation; HET: A2G FLC; 2.00A {Gallus gallus} PDB: 3nk3_A*
Probab=99.80 E-value=8.3e-19 Score=191.92 Aligned_cols=212 Identities=16% Similarity=0.264 Sum_probs=142.9
Q ss_pred eeecCCCCeeecCCCCeeEEEEEEecCCCcCccccccccCCccCCCccEEEEEEEEEecC----ceEEeecceEEEEeEe
Q psy5478 514 RYYSDSHCVHLKPGTGHLSATFEIFLNSCGMSSSANHAVGGVTTPSGSYVENTIIIQYDP----YVQEVWDQARKLRCTW 589 (1009)
Q Consensus 514 G~~~Dp~Cr~~~~~tg~~sv~F~Ipl~~CGt~~~~~~~~~~~~~p~Gi~ysntVVVQ~HP----~~iT~~Dray~VrC~y 589 (1009)
-++.|+.|+....+.+.+.+.|.++++.|||+.+.+ +..+.|+|+|+....+ .|++...-.+.++|.|
T Consensus 33 L~L~d~~C~~~~~~~~~~~~~f~~~l~~CGT~~~~~--------~~~iiY~N~l~~~~~~~~~~~ItR~~~~~l~~~C~Y 104 (297)
T 3nk4_A 33 LTLGPAACKHSSLNAAHNTVTFAAGLHECGSVVQVT--------PDTLIYRTLINYDPSPASNPVIIRTNPAVIPIECHY 104 (297)
T ss_dssp EEETTTTBCCSEEETTTTEEEEEEETTCTTCEEEEC--------SSEEEEEEEEEECCCCCSSTTEESSCCEEEEEEEEE
T ss_pred eEECCCCCCCeeeCCCCcEEEEEecCCCCCceeEec--------CCEEEEEEEEEEeccCCCCCceEecccEEEEEEEEE
Confidence 456789999975332357899999999999997653 4468999999986532 3555566778899999
Q ss_pred cccccceEEeeceeecccc-eeeeeeccCCceEEEEEEecCCCCCcce-eeeEeeCcEEEEEEEEecC-CCcccEEEeEE
Q psy5478 590 YDFYEKAVTFRPFQVDMLH-AVTANFLGDNLQCWMQIQVGKGPWASEV-SGIVKIGQTMTMVLAIKDD-ENKFDMLVRNC 666 (1009)
Q Consensus 590 ~~~~eKtVt~~p~~Vd~l~-~vt~~~~~~~P~C~M~I~~g~GP~g~pV-s~~VkVGq~L~h~w~c~~~-~~~y~m~V~sC 666 (1009)
... ..|+...+.....+ ..+.. ..+.....|+|..++ +..+. ...+.+||+||+++++... +..+.++|++|
T Consensus 105 ~~~--~~vs~~~~~p~~~~~~~~~~-~~g~~~~~m~l~~d~--~~~~~~~~~~~l~~~lyvev~v~~~~~~~l~l~l~~C 179 (297)
T 3nk4_A 105 PRR--EQVSSNAIRPTWSPFNSALS-AEERLVFSLRLMSDD--WSTERPFTGFQLGDILNIQAEVSTENHVPLRLFVDSC 179 (297)
T ss_dssp EC------------CCBCTTC-------CCCCEEEEEECTT--SSSBCCSCCBCTTCEEEEEEEECCTTBCCEEEEEEEE
T ss_pred cCC--CccccccCcCcccccccccc-cccceEEEEEeccCC--CcccccCCcccCCCEEEEEEEEecCCCCCEEEEEeeE
Confidence 753 23332111100000 11111 123457899999864 32221 2246899999999999763 46899999999
Q ss_pred EEEcCC----CCcEEEEecCCCccCcccc---ccceeeccCCCCceeEEEEEeeeeEcCC--CCeEEEEEEEEEccC---
Q psy5478 667 VAHDGK----RAPIQLVDQHGCVVRPKIM---SKFQKIKNFGPSASVVSFAYFQAFKFPD--SMNVHFQCVIQVCRY--- 734 (1009)
Q Consensus 667 ~A~Dg~----g~~~~LIDenGCslD~~Im---~~f~y~~n~g~~as~~a~a~F~AFKFPD--s~~V~FqC~V~lC~~--- 734 (1009)
||++.. ..++.||+.+||+.|.++. ..|.+. + +.+..+++.|+||||.+ ...|||||.|.+|..
T Consensus 180 ~ATps~~~~~~~~y~lI~~~GC~~d~~~~~~~s~~~~~-~---~~~~~~rF~~~~F~F~~~~~~~vylhC~v~vC~~~~~ 255 (297)
T 3nk4_A 180 VAALSPDGDSSPHYAIIDFNGCLVDGRVDDTSSAFITP-R---PREDVLRFRIDVFRFAGDNRNLIYITCHLKVTPADQG 255 (297)
T ss_dssp EEESSSCTTSSSEEEEEBTTTEEGGGGSTTCCCEECSS-C---SSTTEEEEEEECCEETTCSSCEEEEEEEEEEEETTCC
T ss_pred EEeCCCCccCCceEEEEccCCCCcCCccccceeEEecC-C---CCCceEEEEEEeEeccCCCCCeEEEEEEEEEECCCCC
Confidence 999874 2568999779999999875 233211 1 11247899999999998 689999999999975
Q ss_pred --CCCCCCCCC
Q psy5478 735 --NCPEPRCGG 743 (1009)
Q Consensus 735 --~C~pp~Cs~ 743 (1009)
.|.+ .|+.
T Consensus 256 ~~~C~~-~C~~ 265 (297)
T 3nk4_A 256 PDPQNK-ACSF 265 (297)
T ss_dssp CBTTBC-CEEE
T ss_pred CCcccC-cCCC
Confidence 3644 6754
No 2
>3nk4_A ZONA pellucida 3; fertilization, oocyte, egg coat, vitelline E ZP domain, ZP module, egg-sperm interaction, species-specif recognition, speciation; HET: A2G FLC; 2.00A {Gallus gallus} PDB: 3nk3_A*
Probab=99.79 E-value=2.8e-18 Score=187.68 Aligned_cols=211 Identities=16% Similarity=0.265 Sum_probs=142.0
Q ss_pred cCCCCCCeeecCCCCceEEEEEEecCCCCccccccCCCCCccCCCceEEEEEEEEEecC----ceeEeeceeEEEEEEec
Q psy5478 20 YYSDSHCVHLKPGTGHLSATFEIFLNSCGMSSSANHAVGGVTTPSGSYVENTIIIQYDP----YVQEVWDQARKLRCTWY 95 (1009)
Q Consensus 20 ~~~dp~C~~~~~g~gsts~~F~Ipl~~CGt~r~~~~~~~~~~~p~Gv~ysntVVVQfHP----~~~T~~Dray~V~C~y~ 95 (1009)
+..|+.|+....+.+.+.+.|++++++|||+.+.+ ...+.|+|+|+....+ .|.+...-.+.++|.|.
T Consensus 34 ~L~d~~C~~~~~~~~~~~~~f~~~l~~CGT~~~~~--------~~~iiY~N~l~~~~~~~~~~~ItR~~~~~l~~~C~Y~ 105 (297)
T 3nk4_A 34 TLGPAACKHSSLNAAHNTVTFAAGLHECGSVVQVT--------PDTLIYRTLINYDPSPASNPVIIRTNPAVIPIECHYP 105 (297)
T ss_dssp EETTTTBCCSEEETTTTEEEEEEETTCTTCEEEEC--------SSEEEEEEEEEECCCCCSSTTEESSCCEEEEEEEEEE
T ss_pred EECCCCCCCeeeCCCCcEEEEEecCCCCCceeEec--------CCEEEEEEEEEEeccCCCCCceEecccEEEEEEEEEc
Confidence 34578999975332357899999999999998653 3468999999987543 35555667788999997
Q ss_pred ccccceeEeeeeeecccc-eeeeeccCCCceEEEEEEeccCCCcccc-eeeeeeCcEEEEEEEEecC-CCcccEEEeEEE
Q psy5478 96 DFYEKAVTFRPFQVDMLH-AVTANFLGDNLQCWMQIQVGKGPWASEV-SGIVKIGQTMTMVLAIKDD-ENKFDMLVRNCV 172 (1009)
Q Consensus 96 ~~~eKtVt~~p~~Vs~l~-~~~~~~~~~~p~C~M~I~~G~GP~g~pV-s~~VkVGq~L~~~w~c~~~-~~~y~m~V~sCv 172 (1009)
. ...|+...+.....+ ...+ ...+.....|+|+.++ |..+. ...+.+||+||+++++... +..+.++|++||
T Consensus 106 ~--~~~vs~~~~~p~~~~~~~~~-~~~g~~~~~m~l~~d~--~~~~~~~~~~~l~~~lyvev~v~~~~~~~l~l~l~~C~ 180 (297)
T 3nk4_A 106 R--REQVSSNAIRPTWSPFNSAL-SAEERLVFSLRLMSDD--WSTERPFTGFQLGDILNIQAEVSTENHVPLRLFVDSCV 180 (297)
T ss_dssp C------------CCBCTTC-------CCCCEEEEEECTT--SSSBCCSCCBCTTCEEEEEEEECCTTBCCEEEEEEEEE
T ss_pred C--CCccccccCcCccccccccc-ccccceEEEEEeccCC--CcccccCCcccCCCEEEEEEEEecCCCCCEEEEEeeEE
Confidence 4 333332211111111 0111 1123467899999865 32221 2246899999999999864 478999999999
Q ss_pred EEcCC----CCcEEEEecCCCccCcccc---ccceeeccCCCCcceEEEEEEeeEEcCC--CCeEEEEEEEEEccC----
Q psy5478 173 AHDGK----RAPIQLVDQHGCVVRPKIM---SKFQKIKNFGPSASVVSFAYFQAFKFPD--SMNVHFQCVIQVCRY---- 239 (1009)
Q Consensus 173 A~Dg~----g~~iqLIDenGC~lD~~Im---~~f~y~~n~~~sas~va~a~f~AFKFpD--s~~V~FqC~V~IC~~---- 239 (1009)
|++.. ..++.||+.+||+.|.++. ..|.+. + + .+..+++.|+||||.+ ...|||||.|.+|..
T Consensus 181 ATps~~~~~~~~y~lI~~~GC~~d~~~~~~~s~~~~~-~-~--~~~~~rF~~~~F~F~~~~~~~vylhC~v~vC~~~~~~ 256 (297)
T 3nk4_A 181 AALSPDGDSSPHYAIIDFNGCLVDGRVDDTSSAFITP-R-P--REDVLRFRIDVFRFAGDNRNLIYITCHLKVTPADQGP 256 (297)
T ss_dssp EESSSCTTSSSEEEEEBTTTEEGGGGSTTCCCEECSS-C-S--STTEEEEEEECCEETTCSSCEEEEEEEEEEEETTCCC
T ss_pred EeCCCCccCCceEEEEccCCCCcCCccccceeEEecC-C-C--CCceEEEEEEeEeccCCCCCeEEEEEEEEEECCCCCC
Confidence 99764 3568999669999999875 233211 1 1 1236899999999998 689999999999975
Q ss_pred -CCCCCCCCC
Q psy5478 240 -NCPEPRCGG 248 (1009)
Q Consensus 240 -~Cppp~Cs~ 248 (1009)
.|.+ .|+.
T Consensus 257 ~~C~~-~C~~ 265 (297)
T 3nk4_A 257 DPQNK-ACSF 265 (297)
T ss_dssp BTTBC-CEEE
T ss_pred CcccC-cCCC
Confidence 3655 6754
No 3
>3qw9_A Transforming growth factor beta receptor type 3; cytokine receptor, immunoglobulin domain, ZONA pellucida, TG ligand CO-receptor; HET: NAG BMA FUC MAN; 2.00A {Rattus norvegicus}
Probab=99.27 E-value=3.9e-11 Score=122.58 Aligned_cols=119 Identities=8% Similarity=0.133 Sum_probs=85.7
Q ss_pred CceEEEEEEecCCCCCccee--eeEeeCcEEEEEEEEecCCCcccEEEeEEEEEcCCC----CcEEEEecCCCccCcccc
Q psy5478 618 NLQCWMQIQVGKGPWASEVS--GIVKIGQTMTMVLAIKDDENKFDMLVRNCVAHDGKR----APIQLVDQHGCVVRPKIM 691 (1009)
Q Consensus 618 ~P~C~M~I~~g~GP~g~pVs--~~VkVGq~L~h~w~c~~~~~~y~m~V~sC~A~Dg~g----~~~~LIDenGCslD~~Im 691 (1009)
+....|+++.+.. +..++. ..+.+||+||+++++...+..+.+++++|||++..+ .++.||+ |||+.|.++.
T Consensus 4 ~f~~~M~ly~d~~-f~~p~~~~~~v~l~~~lyvev~l~~~d~~l~l~ld~CwATps~d~~~~~~y~lI~-nGC~~D~t~~ 81 (176)
T 3qw9_A 4 NATFNMELYNTDL-FLVPSPGVFSVAENEHVYVEVSVTKADQDLGFAIQTCFLSPYSNPDRMSDYTIIE-NICPKDDSVK 81 (176)
T ss_dssp CEEEEEEEESSTT-CCSBCCSSEEECTTCEEEEEEEEEESCTTEEEEEEEEEEESCSCTTSCCSCEEEE-TTEECSTTCE
T ss_pred eEEEEEEeecCcc-cCcCccCCceEecCCEEEEEEEeccCCCceEEEEeeEEeecCCCccCCccEEEEE-CCccCCCCEE
Confidence 3467788887652 333331 158999999999999876788999999999998752 5689986 8999998864
Q ss_pred ccceeec---cCCCCceeEEEEEeeeeEcCC-CCeEEEEEEEEEccCCCCCCCC
Q psy5478 692 SKFQKIK---NFGPSASVVSFAYFQAFKFPD-SMNVHFQCVIQVCRYNCPEPRC 741 (1009)
Q Consensus 692 ~~f~y~~---n~g~~as~~a~a~F~AFKFPD-s~~V~FqC~V~lC~~~C~pp~C 741 (1009)
- +...+ ....+.+..+++.| +|||.+ .+.|||||.|.+|... +.+.|
T Consensus 82 ~-~~~~~v~~~~~ng~s~~~RFsf-~F~Fv~~~~~VYLHC~v~vC~~~-~~~~C 132 (176)
T 3qw9_A 82 F-YSSKRVHFPIPHAEVDKKRFSF-LFKSVFNTSLLFLHCELTLCSRK-KGSLK 132 (176)
T ss_dssp E-EEEEEEEETTTTEEEEEEEEEE-ECCCCSSCSEEEEEEEEEEEESS-SSSCC
T ss_pred E-EeccccccccCCCCcceEEEEE-EEEecCCCCeEEEEEeeEEECCC-CCCcc
Confidence 2 11010 00011234789999 999995 6899999999999875 33344
No 4
>3qw9_A Transforming growth factor beta receptor type 3; cytokine receptor, immunoglobulin domain, ZONA pellucida, TG ligand CO-receptor; HET: NAG BMA FUC MAN; 2.00A {Rattus norvegicus}
Probab=99.21 E-value=1.4e-10 Score=118.46 Aligned_cols=112 Identities=9% Similarity=0.139 Sum_probs=83.7
Q ss_pred CceEEEEEEeccCCCcccce--eeeeeCcEEEEEEEEecCCCcccEEEeEEEEEcCC----CCcEEEEecCCCccCcccc
Q psy5478 123 NLQCWMQIQVGKGPWASEVS--GIVKIGQTMTMVLAIKDDENKFDMLVRNCVAHDGK----RAPIQLVDQHGCVVRPKIM 196 (1009)
Q Consensus 123 ~p~C~M~I~~G~GP~g~pVs--~~VkVGq~L~~~w~c~~~~~~y~m~V~sCvA~Dg~----g~~iqLIDenGC~lD~~Im 196 (1009)
+....|+++.+. .+..+.. ..+.+||+||+++++...+..+.+++++|||+... ..++.||. +||+.|.++.
T Consensus 4 ~f~~~M~ly~d~-~f~~p~~~~~~v~l~~~lyvev~l~~~d~~l~l~ld~CwATps~d~~~~~~y~lI~-nGC~~D~t~~ 81 (176)
T 3qw9_A 4 NATFNMELYNTD-LFLVPSPGVFSVAENEHVYVEVSVTKADQDLGFAIQTCFLSPYSNPDRMSDYTIIE-NICPKDDSVK 81 (176)
T ss_dssp CEEEEEEEESST-TCCSBCCSSEEECTTCEEEEEEEEEESCTTEEEEEEEEEEESCSCTTSCCSCEEEE-TTEECSTTCE
T ss_pred eEEEEEEeecCc-ccCcCccCCceEecCCEEEEEEEeccCCCceEEEEeeEEeecCCCccCCccEEEEE-CCccCCCCEE
Confidence 456778888765 3444432 25899999999999987778899999999999764 35689996 8999998763
Q ss_pred cc-cee---e-ccCCCCcceEEEEEEeeEEcCC-CCeEEEEEEEEEccCC
Q psy5478 197 SK-FQK---I-KNFGPSASVVSFAYFQAFKFPD-SMNVHFQCVIQVCRYN 240 (1009)
Q Consensus 197 ~~-f~y---~-~n~~~sas~va~a~f~AFKFpD-s~~V~FqC~V~IC~~~ 240 (1009)
-- ... . .+ + .+..+++.| ||||.+ .+.|||||.|.+|...
T Consensus 82 ~~~~~~v~~~~~n-g--~s~~~RFsf-~F~Fv~~~~~VYLHC~v~vC~~~ 127 (176)
T 3qw9_A 82 FYSSKRVHFPIPH-A--EVDKKRFSF-LFKSVFNTSLLFLHCELTLCSRK 127 (176)
T ss_dssp EEEEEEEEETTTT-E--EEEEEEEEE-ECCCCSSCSEEEEEEEEEEEESS
T ss_pred EEeccccccccCC-C--CcceEEEEE-EEEecCCCCeEEEEEeeEEECCC
Confidence 11 010 0 11 1 124688999 999995 6899999999999864
No 5
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=54.04 E-value=6.4 Score=31.58 Aligned_cols=34 Identities=26% Similarity=0.483 Sum_probs=21.2
Q ss_pred ecchhHHHHHH-HHHHHHHHHHHHHHheeeeeeccCC
Q psy5478 953 SLPSFVAGLAM-LLAVLVVACLVAAFLFVRVRSLDAK 988 (1009)
Q Consensus 953 ~~p~f~~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~ 988 (1009)
.+|+.+++.|. |+++++++ ++.|+|+|-|...+|
T Consensus 8 ~~~aIA~gVVgGv~~v~ii~--~~~~~~~RRRr~~~k 42 (44)
T 2l2t_A 8 RTPLIAAGVIGGLFILVIVG--LTFAVYVRRKSIKKK 42 (44)
T ss_dssp SSHHHHHHHHHHHHHHHHHH--HHHHHHHHTTCSSCC
T ss_pred CcceEEEeehHHHHHHHHHH--HHHHHHhhhhhhhhc
Confidence 46777777776 44444333 556777777776655
No 6
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=50.59 E-value=6.2 Score=31.62 Aligned_cols=36 Identities=31% Similarity=0.460 Sum_probs=20.2
Q ss_pred eecchhHHHHHHHHHHHHHHHHHHHHheeeeeeccCC
Q psy5478 952 ISLPSFVAGLAMLLAVLVVACLVAAFLFVRVRSLDAK 988 (1009)
Q Consensus 952 ~~~p~f~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 988 (1009)
-.+|+.+++.|.-++++++-. ++.|+|+|-|...+|
T Consensus 8 s~~~~IA~gVVgGv~~~~ii~-~~~~~~~RRr~~~~k 43 (44)
T 2ks1_B 8 PKIPSIATGMVGALLLLLVVA-LGIGLFMRRRHIVRK 43 (44)
T ss_dssp SCSSSSTHHHHHHHHHHHHHH-HHHHHHHHTTTCCSC
T ss_pred CCcceEEeehhHHHHHHHHHH-HHHHHHhhhhHhhcc
Confidence 356788888877333333333 445566666655443
No 7
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=43.00 E-value=12 Score=30.12 Aligned_cols=33 Identities=21% Similarity=0.353 Sum_probs=18.9
Q ss_pred ecchhHHHHHHHHHHHHHHHHHHHHheeeeeeccC
Q psy5478 953 SLPSFVAGLAMLLAVLVVACLVAAFLFVRVRSLDA 987 (1009)
Q Consensus 953 ~~p~f~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 987 (1009)
++|.++++.|- ++++++.+|+-+++ +|-|...+
T Consensus 10 ~~~~Ia~~vVG-vll~vi~~l~~~~~-~RRR~~~~ 42 (44)
T 2jwa_A 10 PLTSIISAVVG-ILLVVVLGVVFGIL-IKRRQQKI 42 (44)
T ss_dssp SHHHHHHHHHH-HHHHHHHHHHHHHH-HHHHCSCC
T ss_pred cccchHHHHHH-HHHHHHHHHHHHhh-eehhhhhc
Confidence 45667777777 44555555555554 44444433
No 8
>1zza_A Stannin, AG8_1; helix, membrane protein; NMR {Homo sapiens}
Probab=26.29 E-value=37 Score=29.95 Aligned_cols=44 Identities=11% Similarity=0.254 Sum_probs=31.5
Q ss_pred ecchhHHHHHHHHHHHHHHHHHHHHhe-eeeeeccCCCCceeccc
Q psy5478 953 SLPSFVAGLAMLLAVLVVACLVAAFLF-VRVRSLDAKGMPTTYMH 996 (1009)
Q Consensus 953 ~~p~f~~~~~~~~~~~~~~~~~~~~~~-~r~~~~~~~~~~~~~~~ 996 (1009)
|+-|.+-.+|+|+.++..++|+-+-.| +|+|.+....-.-+.+.
T Consensus 10 pttgvvtv~viliavaalg~li~gcwcylrlqri~qsedeesivg 54 (90)
T 1zza_A 10 PTTGVVTVIVILIAIAALGALILGCWCYLRLQRISQSEDEESIVG 54 (90)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCSSCSSCCCTTTTT
T ss_pred CCcceEEehhHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhcc
Confidence 456788888888888888888887665 58888876544444333
No 9
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=25.16 E-value=12 Score=28.68 Aligned_cols=27 Identities=11% Similarity=0.267 Sum_probs=17.3
Q ss_pred ecchhHHHHHHHHHHHHHHHHHHHHhee
Q psy5478 953 SLPSFVAGLAMLLAVLVVACLVAAFLFV 980 (1009)
Q Consensus 953 ~~p~f~~~~~~~~~~~~~~~~~~~~~~~ 980 (1009)
++|.++++.|. ++++++-.|+.++++-
T Consensus 6 ~~~sIaagVvg-lll~vii~l~~~~~iR 32 (35)
T 1iij_A 6 PVTFIIATVVG-VLLFLILVVVVGILIK 32 (35)
T ss_dssp HHHHHHHHHHH-HHHHHHHTTTTTHHHH
T ss_pred CCcEeHHHHHH-HHHHHHHHHHhheEEe
Confidence 46889999999 4445555555555443
No 10
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=21.20 E-value=18 Score=27.70 Aligned_cols=27 Identities=11% Similarity=0.267 Sum_probs=17.2
Q ss_pred ecchhHHHHHHHHHHHHHHHHhhheeee
Q psy5478 458 SLPSFVAGLAMLLAVLVVACLVAAFLFV 485 (1009)
Q Consensus 458 ~~~~f~~~~~~~~~~l~~s~l~a~~l~~ 485 (1009)
++|.++++.|.| |++++..|+.+++..
T Consensus 6 ~~~sIaagVvgl-ll~vii~l~~~~~iR 32 (35)
T 1iij_A 6 PVTFIIATVVGV-LLFLILVVVVGILIK 32 (35)
T ss_dssp HHHHHHHHHHHH-HHHHHHTTTTTHHHH
T ss_pred CCcEeHHHHHHH-HHHHHHHHHhheEEe
Confidence 468899999994 444444555555443
Done!