Query psy5478
Match_columns 1009
No_of_seqs 294 out of 817
Neff 5.1
Searched_HMMs 13730
Date Fri Aug 16 18:34:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5478.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/5478hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1iq6a_ d.38.1.4 (A:) (R)-spec 8.6 1.8E+02 0.013 24.6 5.1 37 144-180 85-121 (132)
2 d2oyza1 b.82.1.22 (A:2-94) Unc 7.8 1.2E+02 0.0087 25.8 3.2 30 415-448 20-49 (93)
3 d1iq6a_ d.38.1.4 (A:) (R)-spec 7.1 2.2E+02 0.016 24.1 4.8 37 639-675 85-121 (132)
4 d2oyza1 b.82.1.22 (A:2-94) Unc 6.8 1.5E+02 0.011 25.2 3.2 29 911-943 21-49 (93)
5 d2axtt1 f.23.34.1 (T:1-30) Pho 6.0 1.6E+02 0.011 19.6 2.2 15 965-979 5-19 (30)
6 d1rutx3 g.39.1.3 (X:83-113) LI 5.9 36 0.0026 23.7 -1.1 17 572-588 15-31 (31)
7 d1q90m_ f.23.25.1 (M:) PetM su 5.5 1.8E+02 0.013 19.8 2.4 12 972-983 19-30 (34)
8 d1p5dx2 c.84.1.1 (X:155-258) P 5.0 2E+02 0.014 23.9 3.0 20 170-189 83-102 (104)
9 d1oqek_ g.24.1.2 (K:) Tumor ne 4.9 38 0.0028 22.9 -1.4 13 162-174 8-20 (31)
10 d1p5dx2 c.84.1.1 (X:155-258) P 4.8 2.1E+02 0.015 23.8 3.0 20 665-684 83-102 (104)
No 1
>d1iq6a_ d.38.1.4 (A:) (R)-specific enoyl-CoA hydratase {Aeromonas caviae [TaxId: 648]}
Probab=8.57 E-value=1.8e+02 Score=24.57 Aligned_cols=37 Identities=11% Similarity=0.013 Sum_probs=27.9
Q ss_pred eeeeCcEEEEEEEEecCCCcccEEEeEEEEEcCCCCc
Q psy5478 144 IVKIGQTMTMVLAIKDDENKFDMLVRNCVAHDGKRAP 180 (1009)
Q Consensus 144 ~VkVGq~L~~~w~c~~~~~~y~m~V~sCvA~Dg~g~~ 180 (1009)
.|..||+|+.+.++.+-.+.-++..-.+.+.+..|+.
T Consensus 85 Pv~~GDtl~~~~~v~~~~~~~~~v~~~~~~~nq~g~~ 121 (132)
T d1iq6a_ 85 PVFVGDEVTAEVEVTALREDKPIATLTTRIFTQGGAL 121 (132)
T ss_dssp CCBTTCEEEEEEEEEEECSSSSEEEEEEEEECTTSCE
T ss_pred cCCCcCEEEEEEEEEEEEcCCCEEEEEEEEEECCCCE
Confidence 3688999999999886555566777777777776653
No 2
>d2oyza1 b.82.1.22 (A:2-94) Uncharacterized protein VPA0057 {Vibrio parahaemolyticus [TaxId: 670]}
Probab=7.83 E-value=1.2e+02 Score=25.78 Aligned_cols=30 Identities=23% Similarity=0.410 Sum_probs=24.2
Q ss_pred cccceEEEEecCcceeeccCCCCCCcceEEEEcc
Q psy5478 415 VNTSRTIQVVAPGDVNFALNAGATSNETVVVSQK 448 (1009)
Q Consensus 415 ~~~~~~~~v~~~~d~~~~~~~~~~~~~~~~~~~~ 448 (1009)
-|....+-|+.||++.|.-+. .|.|.|-.+
T Consensus 20 dg~~kTlGVm~pGeY~F~T~~----~E~MeivsG 49 (93)
T d2oyza1 20 HGQDVSVGVMLPGEYTFGTQA----PERMTVVKG 49 (93)
T ss_dssp TTEEEEEEEECSEEEEEEESS----CEEEEEEES
T ss_pred CCCeeEEEEEeccEEEEcCCC----CEEEEEEee
Confidence 356677889999999999887 699988754
No 3
>d1iq6a_ d.38.1.4 (A:) (R)-specific enoyl-CoA hydratase {Aeromonas caviae [TaxId: 648]}
Probab=7.14 E-value=2.2e+02 Score=24.09 Aligned_cols=37 Identities=11% Similarity=0.013 Sum_probs=27.3
Q ss_pred eEeeCcEEEEEEEEecCCCcccEEEeEEEEEcCCCCc
Q psy5478 639 IVKIGQTMTMVLAIKDDENKFDMLVRNCVAHDGKRAP 675 (1009)
Q Consensus 639 ~VkVGq~L~h~w~c~~~~~~y~m~V~sC~A~Dg~g~~ 675 (1009)
.|.+||+|+.+.++.+-...-++..-.+.+.+..|+.
T Consensus 85 Pv~~GDtl~~~~~v~~~~~~~~~v~~~~~~~nq~g~~ 121 (132)
T d1iq6a_ 85 PVFVGDEVTAEVEVTALREDKPIATLTTRIFTQGGAL 121 (132)
T ss_dssp CCBTTCEEEEEEEEEEECSSSSEEEEEEEEECTTSCE
T ss_pred cCCCcCEEEEEEEEEEEEcCCCEEEEEEEEEECCCCE
Confidence 4788999999999876444556777777777766553
No 4
>d2oyza1 b.82.1.22 (A:2-94) Uncharacterized protein VPA0057 {Vibrio parahaemolyticus [TaxId: 670]}
Probab=6.76 E-value=1.5e+02 Score=25.17 Aligned_cols=29 Identities=21% Similarity=0.432 Sum_probs=23.3
Q ss_pred ccceEEEEecCcceeeccCCCCCcceeEEEecc
Q psy5478 911 NTSRTIQVVAPGDVNFALNAGATSNETVVVSQK 943 (1009)
Q Consensus 911 ~~~~~~~v~~~~d~~f~~~~~~~~~~~~~~~~~ 943 (1009)
|....+-|+.||++.|.-+ ..|.|.|-.|
T Consensus 21 g~~kTlGVm~pGeY~F~T~----~~E~MeivsG 49 (93)
T d2oyza1 21 GQDVSVGVMLPGEYTFGTQ----APERMTVVKG 49 (93)
T ss_dssp TEEEEEEEECSEEEEEEES----SCEEEEEEES
T ss_pred CCeeEEEEEeccEEEEcCC----CCEEEEEEee
Confidence 5667788999999999987 4688888654
No 5
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.97 E-value=1.6e+02 Score=19.63 Aligned_cols=15 Identities=40% Similarity=0.935 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHhe
Q psy5478 965 LAVLVVACLVAAFLF 979 (1009)
Q Consensus 965 ~~~~~~~~~~~~~~~ 979 (1009)
.-++|.+||++-|.|
T Consensus 5 ~yv~ifac~i~lfff 19 (30)
T d2axtt1 5 TYVFIFACIIALFFF 19 (30)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred ehHHHHHHHHHHHHH
Confidence 456788999988765
No 6
>d1rutx3 g.39.1.3 (X:83-113) LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.92 E-value=36 Score=23.72 Aligned_cols=17 Identities=18% Similarity=0.313 Sum_probs=13.8
Q ss_pred cCceEEeecceEEEEeE
Q psy5478 572 DPYVQEVWDQARKLRCT 588 (1009)
Q Consensus 572 HP~~iT~~Dray~VrC~ 588 (1009)
...+....|..|++.||
T Consensus 15 ~e~VmRA~~~VyHl~CF 31 (31)
T d1rutx3 15 SELVMRAQGNVYHLKCF 31 (31)
T ss_dssp TSEEEEETTEEECGGGC
T ss_pred hHhheecccceeeeccC
Confidence 45677888999999986
No 7
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=5.45 E-value=1.8e+02 Score=19.84 Aligned_cols=12 Identities=33% Similarity=0.636 Sum_probs=6.5
Q ss_pred HHHHHHheeeee
Q psy5478 972 CLVAAFLFVRVR 983 (1009)
Q Consensus 972 ~~~~~~~~~r~~ 983 (1009)
.|.-||.+.|+.
T Consensus 19 glaigfvllrve 30 (34)
T d1q90m_ 19 GLAIGFVLLRVE 30 (34)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHhheeeH
Confidence 344566666654
No 8
>d1p5dx2 c.84.1.1 (X:155-258) Phosphomannomutase/phosphoglucomutase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=5.00 E-value=2e+02 Score=23.93 Aligned_cols=20 Identities=25% Similarity=0.376 Sum_probs=17.4
Q ss_pred EEEEEcCCCCcEEEEecCCC
Q psy5478 170 NCVAHDGKRAPIQLVDQHGC 189 (1009)
Q Consensus 170 sCvA~Dg~g~~iqLIDenGC 189 (1009)
=++|.||.+.++-++|++|-
T Consensus 83 lGia~DgDaDR~~~vd~~G~ 102 (104)
T d1p5dx2 83 LGLAFDGDGDRVGVVTNTGT 102 (104)
T ss_dssp EEEEECTTSSBEEEEETTCC
T ss_pred EEEEEcCCCCEEEEECCCCC
Confidence 36799999999999999984
No 9
>d1oqek_ g.24.1.2 (K:) Tumor necrosis factor receptor superfamily member 13c, BAFF-R, Br3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.87 E-value=38 Score=22.94 Aligned_cols=13 Identities=62% Similarity=1.073 Sum_probs=9.7
Q ss_pred CcccEEEeEEEEE
Q psy5478 162 NKFDMLVRNCVAH 174 (1009)
Q Consensus 162 ~~y~m~V~sCvA~ 174 (1009)
+-|+.+|++|+|-
T Consensus 8 ecfd~lvr~cvac 20 (31)
T d1oqek_ 8 ECFDLLVRHCVAC 20 (31)
T ss_dssp EEEETTTTEEEEG
T ss_pred HHhcHHHHHhhhh
Confidence 4577788888874
No 10
>d1p5dx2 c.84.1.1 (X:155-258) Phosphomannomutase/phosphoglucomutase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=4.75 E-value=2.1e+02 Score=23.76 Aligned_cols=20 Identities=25% Similarity=0.376 Sum_probs=17.3
Q ss_pred EEEEEcCCCCcEEEEecCCC
Q psy5478 665 NCVAHDGKRAPIQLVDQHGC 684 (1009)
Q Consensus 665 sC~A~Dg~g~~~~LIDenGC 684 (1009)
=++|.||.+.++-++|++|-
T Consensus 83 lGia~DgDaDR~~~vd~~G~ 102 (104)
T d1p5dx2 83 LGLAFDGDGDRVGVVTNTGT 102 (104)
T ss_dssp EEEEECTTSSBEEEEETTCC
T ss_pred EEEEEcCCCCEEEEECCCCC
Confidence 36799999999999999984
Done!