RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5478
(1009 letters)
>3nk4_A ZONA pellucida 3; fertilization, oocyte, egg coat, vitelline E ZP
domain, ZP module, egg-sperm interaction, species-specif
recognition, speciation; HET: A2G FLC; 2.00A {Gallus
gallus} PDB: 3nk3_A*
Length = 297
Score = 79.3 bits (194), Expect = 5e-16
Identities = 39/256 (15%), Positives = 81/256 (31%), Gaps = 19/256 (7%)
Query: 1 MRVNIEFDRPFYGMIFSKG--YYSDSHCVHLKPGTGHLSATFEIFLNSCGMSSSANHAVG 58
+ V + D G + + + C H H + TF L+ CG
Sbjct: 13 LVVTVHRDLFGTGRLINAADLTLGPAACKHSSLNAAHNTVTFAAGLHECGSVVQ------ 66
Query: 59 GVTTPSGSYVENTIIIQYDPYVQEVWDQARKLRCTWYDFYEKAVTFRPFQVDMLHAVTAN 118
TP I P V + Y + + + +
Sbjct: 67 --VTPDTLIYRTLINYDPSPASNPVIIRTNPAVIPIECHYPRREQVSSNAIRPTWSPFNS 124
Query: 119 FLGDNLQCWMQIQVGKGPWASEV-SGIVKIGQTMTMVLAIK-DDENKFDMLVRNCVAH-- 174
L + +++ W++E ++G + + + ++ + V +CVA
Sbjct: 125 ALSAEERLVFSLRLMSDDWSTERPFTGFQLGDILNIQAEVSTENHVPLRLFVDSCVAALS 184
Query: 175 -DGKRAP-IQLVDQHGCVVRPKIMSKFQKIKNFGPSASVVSFAYFQAFKFP--DSMNVHF 230
DG +P ++D +GC+V ++ P V+ F F+F + ++
Sbjct: 185 PDGDSSPHYAIIDFNGCLVDGRVDDTSSAFITPRPREDVLRF-RIDVFRFAGDNRNLIYI 243
Query: 231 QCVIQVCRYNCPEPRC 246
C ++V +
Sbjct: 244 TCHLKVTPADQGPDPQ 259
Score = 76.6 bits (187), Expect = 4e-15
Identities = 36/235 (15%), Positives = 74/235 (31%), Gaps = 17/235 (7%)
Query: 515 YYSDSHCVHLKPGTGHLSATFEIFLNSCGMSSSANHAVGGVTTPSGSYVENTIIIQYDPY 574
+ C H H + TF L+ CG TP I P
Sbjct: 34 TLGPAACKHSSLNAAHNTVTFAAGLHECGSVVQ--------VTPDTLIYRTLINYDPSPA 85
Query: 575 VQEVWDQARKLRCTWYDFYEKAVTFRPFQVDMLHAVTANFLGDNLQCWMQIQVGKGPWAS 634
V + Y + + + + L + +++ W++
Sbjct: 86 SNPVIIRTNPAVIPIECHYPRREQVSSNAIRPTWSPFNSALSAEERLVFSLRLMSDDWST 145
Query: 635 EV-SGIVKIGQTMTMVLAIK-DDENKFDMLVRNCVAH---DGKRAP-IQLVDQHGCVVRP 688
E ++G + + + ++ + V +CVA DG +P ++D +GC+V
Sbjct: 146 ERPFTGFQLGDILNIQAEVSTENHVPLRLFVDSCVAALSPDGDSSPHYAIIDFNGCLVDG 205
Query: 689 KIMSKFQKIKNFGPSASVVSFAYFQAFKFP--DSMNVHFQCVIQVCRYNCPEPRC 741
++ P V+ F F+F + ++ C ++V +
Sbjct: 206 RVDDTSSAFITPRPREDVLRF-RIDVFRFAGDNRNLIYITCHLKVTPADQGPDPQ 259
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.4 bits (133), Expect = 9e-08
Identities = 95/623 (15%), Positives = 153/623 (24%), Gaps = 253/623 (40%)
Query: 458 SLPSFVAGLAMLLAVLVVACLVAAFL-FV--RVRSLDAKGMP-----------TTYMHG- 502
LP G A A LV FL +V V Y+ G
Sbjct: 40 ILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGN 99
Query: 503 ----------GFDPAEFVKVTR----YYSDSHCVHLKPGTGHLSATFEIFLNSCGMSSSA 548
+ VK Y + SA F +
Sbjct: 100 DIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFR--------AVGE 151
Query: 549 NHAV-----GGVTTPSGSYVENTIIIQ--YDPYVQEVWDQARKLRCTWYDFYEKAVTFRP 601
+A GG Q D Y +E LR D Y+ T+
Sbjct: 152 GNAQLVAIFGG---------------QGNTDDYFEE-------LR----DLYQ---TYHV 182
Query: 602 FQVDMLHAVTANFL---------------GDNLQCWMQ--------------------IQ 626
D++ G N+ W++ I
Sbjct: 183 LVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIG 242
Query: 627 V-------------GKGP--WASEVSGIVKIGQTMTMVLAI--KDDENKFDMLVRNCVA- 668
V G P S + G Q + +AI D F + VR +
Sbjct: 243 VIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITV 302
Query: 669 --HDGKRAPIQLVDQHGCVVRPKIMSKFQKIKNFGPSA--SVVSFAYFQAFKFPDSMNVH 724
G R + + P I+ + PS S+ + Q + + N H
Sbjct: 303 LFFIGVRC--YEAYPN-TSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSH 359
Query: 725 FQC--VIQVCRYNCPEPRCGGDYGAPQ---LGGGFGSGEYGPPPPPPHVNSIGSEYGVPD 779
+++ N + + G PP S YG+
Sbjct: 360 LPAGKQVEISLVN-----------GAKNLVVSG------------PPQ-----SLYGL-- 389
Query: 780 FGGPGYPEINPRHPSGPAGA------YSEQKPEVVPAPAASVSNSPNPSSPAPQKSSPSS 833
+ R P+G +SE+K + SN P + +P S
Sbjct: 390 -------NLTLRKAKAPSGLDQSRIPFSERKLK--------FSNRFLPVA-SPFHSH--- 430
Query: 834 ISDNEVHMPPPPLPGHGATYQTVKRKGTVSEEGGDLVTLGGRPRSVEIFPDELRGARRRR 893
+ P A+ K DLV +V +++
Sbjct: 431 ------LLVP-------ASDLINK----------DLV-----KNNVSFNAKDIQ------ 456
Query: 894 DTILHVYK----REAQEMTDVNTSRTIQVVAPGDVNF--ALNAGATSNETVVVSQKSIDS 947
+ VY + + ++ + R + + V + AT
Sbjct: 457 ---IPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKAT-------------- 499
Query: 948 EHICISL-PSFVAGLAMLLAVLV 969
HI + P +GL +L
Sbjct: 500 -HI-LDFGPGGASGLGVLTHRNK 520
Score = 50.0 bits (119), Expect = 4e-06
Identities = 81/539 (15%), Positives = 136/539 (25%), Gaps = 224/539 (41%)
Query: 18 KGYYSDSHCVHLKPGTGHLSATFEIFLNSCGMSSSANHAV-----GGVTTPSGSYVENTI 72
K Y + SA F + +A GG
Sbjct: 124 KNYITARIMAKRPFDKKSNSALFR--------AVGEGNAQLVAIFGG------------- 162
Query: 73 IIQ--YDPYVQEVWDQARKLRCTWYDFYEKAVTFRPFQVDMLHAVTANFL---------- 120
Q D Y +E LR D Y+ T+ D++
Sbjct: 163 --QGNTDDYFEE-------LR----DLYQ---TYHVLVGDLIKFSAETLSELIRTTLDAE 206
Query: 121 -----GDNLQCWMQ--------------------IQV-------------GKGP--WASE 140
G N+ W++ I V G P S
Sbjct: 207 KVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSY 266
Query: 141 VSGIVKIGQTMTMVLAI--KDDENKFDMLVRNCVA---HDGKRAPIQLVDQHGCVVRPKI 195
+ G Q + +AI D F + VR + G R + + P I
Sbjct: 267 LKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRC--YEAYPN-TSLPPSI 323
Query: 196 MSKFQKIKNFGPSA--SVVSFAYFQAFKFPDSMNVHFQC--VIQVCRYNCPEPRCGGDYG 251
+ + PS S+ + Q + + N H +++ N
Sbjct: 324 LEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVN----------- 372
Query: 252 APQ---LGGGFGSGEYGPPPPPPHVNSIGSEYGVPDFGGPGYPEINPRHPSGPAGA---- 304
+ + G PP S YG+ + R P+G
Sbjct: 373 GAKNLVVSG------------PPQ-----SLYGL---------NLTLRKAKAPSGLDQSR 406
Query: 305 --YSEQKPEVVPAPAASVSNSPNPSSPAPQKSSPSSISDNEVHMPPPPLPGHGATYQTVK 362
+SE+K + SN P + +P S + P A+ K
Sbjct: 407 IPFSERKLK--------FSNRFLPVA-SPFHSH---------LLVP-------ASDLINK 441
Query: 363 RKGTVSEEGGDLVTLGGRPRSVEIFPDELRGARRRRDTILHVYK----REAQEMTDVNTS 418
DLV +V +++ + VY + + ++ +
Sbjct: 442 ----------DLV-----KNNVSFNAKDIQ---------IPVYDTFDGSDLRVLSGSISE 477
Query: 419 RTIQVVAPGDVNF--ALNAGATSNETVVVSQKSIDSEHICISL-PSFVAGLAMLLAVLV 474
R + + V + AT HI + P +GL +L
Sbjct: 478 RIVDCIIRLPVKWETTTQFKAT---------------HI-LDFGPGGASGLGVLTHRNK 520
Score = 49.7 bits (118), Expect = 5e-06
Identities = 75/476 (15%), Positives = 132/476 (27%), Gaps = 135/476 (28%)
Query: 298 PSGPAGAYSEQKPE---VVPAPAASVSNSPNPSSPAPQKSSPSSISDNEVHMPPPPLPGH 354
P+ S+ + + ++P P + P++PA + V P
Sbjct: 23 PTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVE------PSK 76
Query: 355 GATYQTVKRKGTVSEE-----GGDLVTLGGRPRSVEIFPDELRGARRRRDTILHVYKREA 409
+ V E G D+ L E + ++ Y A
Sbjct: 77 VGQFDQVLNLCLTEFENCYLEGNDIHAL------AAKLLQENDTTLVKTKELIKNYI-TA 129
Query: 410 QEMTDVNTSRTIQVVAPGDVNFALNAGATSNETVVVS----QKSIDS---EHICISL--- 459
+ M R + AL +V+ Q + D E L
Sbjct: 130 RIMAK----RPFDKKSNS----ALFRAVGEGNAQLVAIFGGQGNTDDYFEE-----LRDL 176
Query: 460 ----PSFVAGL----AMLLAVLVVACLVAAFLFVRVRSLDAKGMPTTYMHGGFDPAEFVK 511
V L A L+ L+ L A +F + G + E+++
Sbjct: 177 YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQ----------------GLNILEWLE 220
Query: 512 VT-----RYYSDSHCVHLKPGTGHLS-ATFEIFLNSCGMS-SSANHAVGGVTTPSGSYVE 564
+ Y S + P G + A + + G + + G T S V
Sbjct: 221 NPSNTPDKDYLLSIPISC-PLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVT 279
Query: 565 NTIIIQYDPYVQEVWDQARKLRCTWYDFYEKAVTFRPFQVDMLHAVTANF-LGDNLQCWM 623
I + D +W F+ A+T F +G ++C
Sbjct: 280 AVAIAETD---------------SWESFFVSVRK----------AITVLFFIG--VRC-- 310
Query: 624 QIQVGK-GPWASEVSGIVKIGQ-TMT-MVLAIKD-DENKFDMLVR--NCVAHDGKRAPIQ 677
S + ++ + + M L+I + + + V N GK+ I
Sbjct: 311 YEAYPNTSLPPSILEDSLENNEGVPSPM-LSISNLTQEQVQDYVNKTNSHLPAGKQVEIS 369
Query: 678 LVDQHGCVVRPKIMSKFQKIKNF---GPSASVVSFA-YFQAFKFPDSMNVHFQCVI 729
LV+ KN GP S+ + K P ++ Q I
Sbjct: 370 LVNGA---------------KNLVVSGPPQSLYGLNLTLRKAKAPSGLD---QSRI 407
Score = 37.3 bits (86), Expect = 0.036
Identities = 73/503 (14%), Positives = 133/503 (26%), Gaps = 171/503 (33%)
Query: 195 IMSKFQKIKNFGPSASVVSFAYFQAF--KFPDSMNVH-------------FQCVIQVCR- 238
+ S + G V++ F + + ++H ++ +
Sbjct: 68 VSSLVEP-SKVGQFDQVLNLC-LTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKN 125
Query: 239 YNCPEPRCGGDYGAPQLGGGFGSGEYGPPPPPPHVNSIGSE----YGVPDFGGPG----Y 290
Y A + + ++G + FGG G Y
Sbjct: 126 Y----------ITARIMAKR----PFDKKSNSALFRAVGEGNAQLVAI--FGGQGNTDDY 169
Query: 291 -PEINPRHPSGPAGAYSEQKPEVVP--APAASVSNSPNPSSPAPQKSSPSSIS-----DN 342
E+ R Y V +A + ++ +K ++ +N
Sbjct: 170 FEEL--RD------LYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLEN 221
Query: 343 EVHMPPPP--------LPGHGAT----YQTVKRKGTVSEEGGDLVTLGGRPRSVEIFPDE 390
+ P P G Y + LG P
Sbjct: 222 PSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAK------------LLGFTPGE---LRSY 266
Query: 391 LRGA-RRRRDTILHVYKREAQEMTD--VNTSRTIQV----------------VAPGDVNF 431
L+GA + + V E V+ + I V + P +
Sbjct: 267 LKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILED 326
Query: 432 ALNAG--------ATSNETVVVSQKSID--------SEHICISL---P-SFV-AGLAMLL 470
+L + SN T Q ++ + + ISL + V +G L
Sbjct: 327 SLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSL 386
Query: 471 AVLVVACLVAAFLFVRVRSLDAKGMPTTYMHGGFD----P---------AEFVKVTRYYS 517
L + +R A P+ G D P F+ V +
Sbjct: 387 YGLNLT----------LRKAKA---PS-----GLDQSRIPFSERKLKFSNRFLPVASPF- 427
Query: 518 DSHCVHLKPGTGHLS---ATFEIFLNSCGMSSSANHAVGG--VTTPSGSYVENTI--IIQ 570
H L P + ++ + N+ + G + SGS E + II+
Sbjct: 428 --HSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIR 485
Query: 571 YDPYVQEVWDQARKLRCTWY-DF 592
P V+ W+ + + T DF
Sbjct: 486 -LP-VK--WETTTQFKATHILDF 504
Score = 33.1 bits (75), Expect = 0.57
Identities = 47/325 (14%), Positives = 85/325 (26%), Gaps = 131/325 (40%)
Query: 793 PSGPAGAYSEQKPE---VVPAPAASVSNSPNPSSPAP-------------QKSSPSS--- 833
P+ S+ + + ++P P + P++PA + S
Sbjct: 23 PTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQ 82
Query: 834 -------------ISDNEVHMPPPPLPGHGAT-----------Y----QTVKRKGT---- 861
+ N++H L T Y KR
Sbjct: 83 VLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSN 142
Query: 862 ------VSEEGGDLVTL-GGRPRSVEIFPDELRGARRRRDTILHVYKREAQEMTDVNTSR 914
V E LV + GG+ + + F +ELR + Y ++ +
Sbjct: 143 SALFRAVGEGNAQLVAIFGGQGNTDDYF-EELR-------DLYQTYHVLVGDLIKFSAET 194
Query: 915 TIQVVA-PGDVNFALNAGATSNETVVVSQKSIDSEHIC---ISLP--------------- 955
+++ D G E + + D +++ IS P
Sbjct: 195 LSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAK 254
Query: 956 ----------SFVAGLAMLLAVLVVACLVAA----------------FLF-VRVRSLDA- 987
S++ G LV A +A LF + VR +A
Sbjct: 255 LLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAY 314
Query: 988 -----------------KGMPTTYM 995
+G+P + M
Sbjct: 315 PNTSLPPSILEDSLENNEGVP-SPM 338
Score = 30.8 bits (69), Expect = 2.8
Identities = 7/24 (29%), Positives = 10/24 (41%), Gaps = 2/24 (8%)
Query: 76 YD--PYVQEVWDQARKLRCTWYDF 97
Y Q+VW++A Y F
Sbjct: 1636 YKTSKAAQDVWNRADNHFKDTYGF 1659
Score = 30.8 bits (69), Expect = 2.8
Identities = 7/24 (29%), Positives = 10/24 (41%), Gaps = 2/24 (8%)
Query: 571 YD--PYVQEVWDQARKLRCTWYDF 592
Y Q+VW++A Y F
Sbjct: 1636 YKTSKAAQDVWNRADNHFKDTYGF 1659
Score = 30.8 bits (69), Expect = 3.1
Identities = 20/112 (17%), Positives = 38/112 (33%), Gaps = 20/112 (17%)
Query: 355 GATYQTVKRKGTVSEEGGDLVTLGGRPRSVEIFPDELRGARRRRDTILHVYKREAQEMTD 414
G T Q + + ++ + P V + + + +V +R +
Sbjct: 1790 GMTMQVAVPRDELGRSNYGMIAI--NPGRVAASFSQ--------EALQYVVERVGKRTGW 1839
Query: 415 V------NTSRTIQVVAPGDVNFALNAGATSNETVVVSQKSIDSEHICISLP 460
+ N Q VA GD+ AL+ +N + + ID + SL
Sbjct: 1840 LVEIVNYN-VENQQYVAAGDLR-ALD--TVTNVLNFIKLQKIDIIELQKSLS 1887
Score = 30.8 bits (69), Expect = 3.1
Identities = 20/112 (17%), Positives = 38/112 (33%), Gaps = 20/112 (17%)
Query: 850 GATYQTVKRKGTVSEEGGDLVTLGGRPRSVEIFPDELRGARRRRDTILHVYKREAQEMTD 909
G T Q + + ++ + P V + + + +V +R +
Sbjct: 1790 GMTMQVAVPRDELGRSNYGMIAI--NPGRVAASFSQ--------EALQYVVERVGKRTGW 1839
Query: 910 V------NTSRTIQVVAPGDVNFALNAGATSNETVVVSQKSIDSEHICISLP 955
+ N Q VA GD+ AL+ +N + + ID + SL
Sbjct: 1840 LVEIVNYN-VENQQYVAAGDLR-ALD--TVTNVLNFIKLQKIDIIELQKSLS 1887
Score = 30.0 bits (67), Expect = 5.9
Identities = 73/458 (15%), Positives = 124/458 (27%), Gaps = 138/458 (30%)
Query: 9 RPFYGMIFSKGYYSDSHCVHLKPGTGHLSAT--FEIFLNSCGMSSSANHAVGGVTTPSGS 66
RP S G S H + + P A+ E F P+ +
Sbjct: 7 RPL---TLSHG--SLEHVLLV-PTASFFIASQLQEQFNKIL---PEPTEGFAADDEPT-T 56
Query: 67 YVENTIIIQYDPYVQEVWDQARKLRCTWYDFYEKAVTFRPFQVDML-----HAVTANFLG 121
E ++ ++ YV + +D F+ L HA+ A L
Sbjct: 57 PAE--LVGKFLGYVS---SLVEPSKVGQFDQVLNLC-LTEFENCYLEGNDIHALAAKLLQ 110
Query: 122 DN----------LQCWMQ-IQVGKGP---------WASEVSGIVKI-----GQTMTMVLA 156
+N ++ ++ + K P + + G ++ GQ T
Sbjct: 111 ENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNT---- 166
Query: 157 IKDDENKFDMLVRNCVAHDGKRAPIQLVDQHGCVVRPKIMSKFQKIKNFGPSASVVSFAY 216
++ F+ L R+ L + +V I + + + +
Sbjct: 167 ----DDYFEEL-RD------------LYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVF 209
Query: 217 FQAFKF----------PD---------SMNVHFQCVIQVCRYNCPEPRCGGDYG--APQL 255
Q PD S + VIQ+ Y G G L
Sbjct: 210 TQGLNILEWLENPSNTPDKDYLLSIPISCPLI--GVIQLAHYVVTAKLLGFTPGELRSYL 267
Query: 256 GGGFGSGE---------YGPPPPPPHVNS---------IGSEYGVPDFGGPGYPEINPRH 297
G G + V+ IG YP +
Sbjct: 268 KGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVR------CYEAYPNTSLP- 320
Query: 298 PSGPAGAYSEQKPEVVPAPAASVSNSPNPSSPAPQKSSPSSISDNEVHMPPPPLPGHGAT 357
PS S + E VP+P S+SN Q+ ++ H LP
Sbjct: 321 PS--ILEDSLENNEGVPSPMLSISN-------LTQEQVQDYVNKTNSH-----LPAGKQV 366
Query: 358 YQTVKRKGTVSEEGGDLVTLGGRPRSVEIFPDELRGAR 395
++ G + + G P+S+ LR A+
Sbjct: 367 EISLV-------NGAKNLVVSGPPQSLYGLNLTLRKAK 397
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.1 bits (103), Expect = 3e-04
Identities = 85/640 (13%), Positives = 172/640 (26%), Gaps = 208/640 (32%)
Query: 75 QYDPYVQEVWDQARKLRCTWYDFYEKAVTFRPFQVDMLHAVTANFLGDNLQC---WMQIQ 131
+ D + + LR W T Q +M+ F+ + L+ ++
Sbjct: 50 EIDHIIMSKDAVSGTLRLFW--------TLLSKQEEMVQK----FVEEVLRINYKFL--- 94
Query: 132 VGKGPWASEVSGIVKIGQTMTMVLAIKDDENKFDMLVRNCVAHDGKRAPIQLVDQHGCVV 191
P +E + +M + I+ R+ + +D Q+ ++ V
Sbjct: 95 --MSPIKTE-----QRQPSMMTRMYIEQ---------RDRLYNDN-----QVFAKYN-VS 132
Query: 192 RPKIMSKFQKIKN------------------FGPS---ASVVSFAYFQAFKFPDSMNVHF 230
R + + K++ G + V Q K + +
Sbjct: 133 RLQ---PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQC-KMDF--KIFW 186
Query: 231 QCVIQVCRYNCPEPR-------CGGDYGAPQLGGGFGSGEYGPPPPPPHVNSIGSEYGVP 283
+ + N PE Q+ + S ++SI
Sbjct: 187 ---LNLKNCNSPETVLEMLQKLL------YQIDPNWTSRSDHSSNIKLRIHSI-QAELRR 236
Query: 284 DFGGPGYPE---I-----NPRHPSGPAGAYSEQKPEVVPAPAASVSN--SPNPSSPAPQK 333
Y + N + A++ ++ V++ S ++
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKA----WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD 292
Query: 334 SSPSSISDNE--------VHMPPPPLPGHGATYQTVKRKGTVSEEGGDLVTLGGRPRSVE 385
+++ +E + P LP E L PR +
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQDLP----------------RE-----VLTTNPRRLS 331
Query: 386 IFPDELRGARRRRDTILHVYKREAQEMTDVNTSRTIQVVAPGDV--NFALNAGATSNETV 443
I + +R D H + ++ V+ P + F + +
Sbjct: 332 IIAESIRDGLATWDNWKH-VNCDKLTTI---IESSLNVLEPAEYRKMF---------DRL 378
Query: 444 VVSQKSIDSEHICISLPSFVAGLAMLLAVLVVAC--LVAAFLFVRVRSL---DAKGMPTT 498
V S HI P+ + L+++ ++ + +V L SL K T
Sbjct: 379 SVFPPSA---HI----PTIL--LSLIWFDVIKSDVMVVVNKL--HKYSLVEKQPKES-TI 426
Query: 499 YMHG---------------------------GFDPAEFVKVT-RYYSDSHCV-HLKP-GT 528
+ FD + + Y SH HLK
Sbjct: 427 SIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH 486
Query: 529 GHLSATFE-IFLNSCGMSSSANHAVGGVTTPSGSYVENTI--IIQYDPYVQEVWDQARKL 585
F +FL+ + H + + NT+ + Y PY+ +
Sbjct: 487 PERMTLFRMVFLDFRFLEQKIRHD--STAWNASGSILNTLQQLKFYKPYICD-------- 536
Query: 586 RCTWYDFYEKAVTFRPFQVDMLHAVTANFLGDNLQCWMQI 625
Y+ A+ +D L + N + ++I
Sbjct: 537 NDPKYERLVNAI------LDFLPKIEENLICSKYTDLLRI 570
Score = 39.8 bits (92), Expect = 0.005
Identities = 70/510 (13%), Positives = 127/510 (24%), Gaps = 208/510 (40%)
Query: 398 RDTILHVYKREAQEMTDVNTSRTIQVVAPGDVNFALNAGATSNETVVVSQKSIDSEHICI 457
+D IL V++ + D DV + ++S++ ID HI I
Sbjct: 19 KD-ILSVFEDAFVDNFDCK-----------DVQDMPKS--------ILSKEEID--HI-I 55
Query: 458 SLPSFVAGLAMLLAVL------VVACLVAA-------FLF--VRVRSLDAKGMPTTY--- 499
V+G L L +V V FL ++ M Y
Sbjct: 56 MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ 115
Query: 500 ---MHGGFDPAEFVK--VTRY----------YSDSH----CVHLKPGTG----------- 529
++ D F K V+R + G+G
Sbjct: 116 RDRLYN--DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS 173
Query: 530 ---HLSATFEIF---LNSCG-------MSSSANHAVGGVTTPSGSYVENTI--------- 567
F+IF L +C M + + T + N
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233
Query: 568 ---IIQYDPYVQ------EVWDQ------------------------------------- 581
+++ PY V +
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDH 293
Query: 582 --------------ARKLRCTWYDFYEKAVTFRPFQVDMLHAVTANFLGDNLQCWMQIQV 627
+ L C D + +T P ++ ++ + L W +
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL-ATWDNWKHVNC 352
Query: 628 GKGPWASEVS----------------GI----VKIGQTMTMVLAI---KDDENKFDMLVR 664
K E S + I T++L++ ++ ++V
Sbjct: 353 DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI---PTILLSLIWFDVIKSDVMVVVN 409
Query: 665 NCVAHDGKRAPIQLVDQHGCVVRPKIMSKFQKIKNFGPSASVVSFAYFQAFKFPDSMNVH 724
K + LV++ I S + ++K K + +H
Sbjct: 410 KLH----KYS---LVEKQPKESTISIPSIYLELK----------------VKLENEYALH 446
Query: 725 FQCVIQVCRYNCPEPRCGGDYGAPQLGGGF 754
+ ++ YN P+ D P L F
Sbjct: 447 -RSIVD--HYNIPKTFDSDDLIPPYLDQYF 473
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A
1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A*
1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A*
1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Length = 1733
Score = 40.1 bits (93), Expect = 0.005
Identities = 24/94 (25%), Positives = 36/94 (38%), Gaps = 5/94 (5%)
Query: 261 SGEYGPPPPPPHVNSIGSEYGVPDFG--GPGYPEINPRHPSGPAGAYSEQKPEVVPAPAA 318
S Y P P S P + P Y +P + S + +YS P P +
Sbjct: 1553 SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSPSYSPTSPS 1611
Query: 319 SVSNSPN--PSSPAPQKSSPSSISDNEVHMPPPP 350
SP+ P+SP+ +SPS + + P P
Sbjct: 1612 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1645
Score = 40.1 bits (93), Expect = 0.005
Identities = 24/94 (25%), Positives = 36/94 (38%), Gaps = 5/94 (5%)
Query: 756 SGEYGPPPPPPHVNSIGSEYGVPDFG--GPGYPEINPRHPSGPAGAYSEQKPEVVPAPAA 813
S Y P P S P + P Y +P + S + +YS P P +
Sbjct: 1553 SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSPSYSPTSPS 1611
Query: 814 SVSNSPN--PSSPAPQKSSPSSISDNEVHMPPPP 845
SP+ P+SP+ +SPS + + P P
Sbjct: 1612 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1645
Score = 37.8 bits (87), Expect = 0.021
Identities = 14/91 (15%), Positives = 22/91 (24%)
Query: 247 GGDYGAPQLGGGFGSGEYGPPPPPPHVNSIGSEYGVPDFGGPGYPEINPRHPSGPAGAYS 306
G D G G + S + G D G+ +
Sbjct: 1465 GQDGGVTPYSNESGLVNADLDVKDELMFSPLVDSGSNDAMAGGFTAYGGADYGEATSPFG 1524
Query: 307 EQKPEVVPAPAASVSNSPNPSSPAPQKSSPS 337
S +P+SP +SP+
Sbjct: 1525 AYGEAPTSPGFGVSSPGFSPTSPTYSPTSPA 1555
Score = 37.8 bits (87), Expect = 0.021
Identities = 14/91 (15%), Positives = 22/91 (24%)
Query: 742 GGDYGAPQLGGGFGSGEYGPPPPPPHVNSIGSEYGVPDFGGPGYPEINPRHPSGPAGAYS 801
G D G G + S + G D G+ +
Sbjct: 1465 GQDGGVTPYSNESGLVNADLDVKDELMFSPLVDSGSNDAMAGGFTAYGGADYGEATSPFG 1524
Query: 802 EQKPEVVPAPAASVSNSPNPSSPAPQKSSPS 832
S +P+SP +SP+
Sbjct: 1525 AYGEAPTSPGFGVSSPGFSPTSPTYSPTSPA 1555
Score = 37.4 bits (86), Expect = 0.034
Identities = 28/118 (23%), Positives = 40/118 (33%), Gaps = 5/118 (4%)
Query: 242 PEPRCGGDYGAPQLGGGFGSGEYGPPPPPPHVNSIGSEYGVPDFGG--PGYPEINPRHPS 299
P G + +G +YG P + G P FG PG+ +P + S
Sbjct: 1494 PLVDSGSNDAMAGGFTAYGGADYGEATSPF--GAYGEAPTSPGFGVSSPGFSPTSPTY-S 1550
Query: 300 GPAGAYSEQKPEVVPAPAASVSNSPNPSSPAPQKSSPSSISDNEVHMPPPPLPGHGAT 357
+ AYS P P + SP+ S +P S S P P + T
Sbjct: 1551 PTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1608
Score = 37.4 bits (86), Expect = 0.034
Identities = 28/118 (23%), Positives = 40/118 (33%), Gaps = 5/118 (4%)
Query: 737 PEPRCGGDYGAPQLGGGFGSGEYGPPPPPPHVNSIGSEYGVPDFGG--PGYPEINPRHPS 794
P G + +G +YG P + G P FG PG+ +P + S
Sbjct: 1494 PLVDSGSNDAMAGGFTAYGGADYGEATSPF--GAYGEAPTSPGFGVSSPGFSPTSPTY-S 1550
Query: 795 GPAGAYSEQKPEVVPAPAASVSNSPNPSSPAPQKSSPSSISDNEVHMPPPPLPGHGAT 852
+ AYS P P + SP+ S +P S S P P + T
Sbjct: 1551 PTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1608
Score = 34.7 bits (79), Expect = 0.21
Identities = 25/109 (22%), Positives = 34/109 (31%), Gaps = 12/109 (11%)
Query: 261 SGEYGPPPPPPHVNSIGSEYGVPDFGGPGYPEINPRHP---------SGPAGAYSEQKPE 311
S Y P P S P + P P +P P S + +YS P
Sbjct: 1623 SPSYSPTSPSYSPTSPSYSPTSPSYS-PTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPS 1681
Query: 312 VVPAPAASVSNSPNPS--SPAPQKSSPSSISDNEVHMPPPPLPGHGATY 358
P + SPN S SP+ +SP + + P H
Sbjct: 1682 YSPTSPSYSPTSPNYSPTSPSYSPTSPGYSPGSPAYSPKQDEQKHNENE 1730
Score = 34.7 bits (79), Expect = 0.21
Identities = 25/109 (22%), Positives = 34/109 (31%), Gaps = 12/109 (11%)
Query: 756 SGEYGPPPPPPHVNSIGSEYGVPDFGGPGYPEINPRHP---------SGPAGAYSEQKPE 806
S Y P P S P + P P +P P S + +YS P
Sbjct: 1623 SPSYSPTSPSYSPTSPSYSPTSPSYS-PTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPS 1681
Query: 807 VVPAPAASVSNSPNPS--SPAPQKSSPSSISDNEVHMPPPPLPGHGATY 853
P + SPN S SP+ +SP + + P H
Sbjct: 1682 YSPTSPSYSPTSPNYSPTSPSYSPTSPGYSPGSPAYSPKQDEQKHNENE 1730
Score = 33.9 bits (77), Expect = 0.36
Identities = 25/100 (25%), Positives = 32/100 (32%), Gaps = 3/100 (3%)
Query: 260 GSGEYGPPPPPPHVNSIGSEYGVPDFGGPGYPEINPRHP--SGPAGAYSEQKPEVVPAPA 317
S Y P P S P + P P +P P S + +YS P P
Sbjct: 1601 TSPSYSPTSPSYSPTSPSYSPTSPSYS-PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1659
Query: 318 ASVSNSPNPSSPAPQKSSPSSISDNEVHMPPPPLPGHGAT 357
A SP+ S +P S S P P + T
Sbjct: 1660 AYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPT 1699
Score = 33.9 bits (77), Expect = 0.36
Identities = 25/100 (25%), Positives = 32/100 (32%), Gaps = 3/100 (3%)
Query: 755 GSGEYGPPPPPPHVNSIGSEYGVPDFGGPGYPEINPRHP--SGPAGAYSEQKPEVVPAPA 812
S Y P P S P + P P +P P S + +YS P P
Sbjct: 1601 TSPSYSPTSPSYSPTSPSYSPTSPSYS-PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1659
Query: 813 ASVSNSPNPSSPAPQKSSPSSISDNEVHMPPPPLPGHGAT 852
A SP+ S +P S S P P + T
Sbjct: 1660 AYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPT 1699
Score = 31.6 bits (71), Expect = 1.8
Identities = 20/108 (18%), Positives = 31/108 (28%), Gaps = 14/108 (12%)
Query: 256 GGGFGSGEYGPPPPP---PHVNSIGSEYGVPDFGGPGYPEINPRHPSGPAGAYSEQKPEV 312
G + + P V+S ++ F G + A + P
Sbjct: 1476 ESGLVNADLDVKDELMFSPLVDSGSNDAMAGGFTAYGGADYGEATSPFGAYGEAPTSPGF 1535
Query: 313 VPAPAASVSNSPN--PSSPAPQKSSPSSISDNEVHMPPPPLPGHGATY 358
+ SP P+SPA SP+S P P + T
Sbjct: 1536 GVSSPGFSPTSPTYSPTSPAY---SPTS------PSYSPTSPSYSPTS 1574
Score = 31.6 bits (71), Expect = 1.8
Identities = 20/108 (18%), Positives = 31/108 (28%), Gaps = 14/108 (12%)
Query: 751 GGGFGSGEYGPPPPP---PHVNSIGSEYGVPDFGGPGYPEINPRHPSGPAGAYSEQKPEV 807
G + + P V+S ++ F G + A + P
Sbjct: 1476 ESGLVNADLDVKDELMFSPLVDSGSNDAMAGGFTAYGGADYGEATSPFGAYGEAPTSPGF 1535
Query: 808 VPAPAASVSNSPN--PSSPAPQKSSPSSISDNEVHMPPPPLPGHGATY 853
+ SP P+SPA SP+S P P + T
Sbjct: 1536 GVSSPGFSPTSPTYSPTSPAY---SPTS------PSYSPTSPSYSPTS 1574
Score = 30.4 bits (68), Expect = 4.3
Identities = 20/96 (20%), Positives = 27/96 (28%), Gaps = 4/96 (4%)
Query: 256 GGGFGSGEYGPPPPPPHVNSIGSEYGVPDFGG--PGYPEINPRHPSGPAGAYSEQKPEVV 313
S Y P P S P + P Y +P + S + +YS P
Sbjct: 1639 SYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSPNYS 1697
Query: 314 PAPAASVSNSPNPSSPAPQKSSPSSISDNEVHMPPP 349
P + SP S +P SP
Sbjct: 1698 PTSPSYSPTSPGYSPGSPA-YSPKQDEQKHNENENS 1732
Score = 30.4 bits (68), Expect = 4.3
Identities = 20/96 (20%), Positives = 27/96 (28%), Gaps = 4/96 (4%)
Query: 751 GGGFGSGEYGPPPPPPHVNSIGSEYGVPDFGG--PGYPEINPRHPSGPAGAYSEQKPEVV 808
S Y P P S P + P Y +P + S + +YS P
Sbjct: 1639 SYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSPNYS 1697
Query: 809 PAPAASVSNSPNPSSPAPQKSSPSSISDNEVHMPPP 844
P + SP S +P SP
Sbjct: 1698 PTSPSYSPTSPGYSPGSPA-YSPKQDEQKHNENENS 1732
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos
taurus} SCOP: i.9.1.1
Length = 390
Score = 38.7 bits (89), Expect = 0.008
Identities = 21/117 (17%), Positives = 29/117 (24%), Gaps = 1/117 (0%)
Query: 242 PEPRCGGDYGAPQLGGGFGSGEYGPPPPPPHVNSIGSEYGVPDFGGPGYPEINPRHPSGP 301
+ GD + G GS +VN G PG PE P
Sbjct: 250 GDGHARGDSVSQGTGLAPGSPRKPGTSSIGNVNPGSYGPGSSGTWNPGRPEPGSAGTWNP 309
Query: 302 AGAYSEQKPEVVP-APAASVSNSPNPSSPAPQKSSPSSISDNEVHMPPPPLPGHGAT 357
P P + + NP P P + + E G +
Sbjct: 310 GRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNTGSSGS 366
Score = 38.7 bits (89), Expect = 0.008
Identities = 21/117 (17%), Positives = 29/117 (24%), Gaps = 1/117 (0%)
Query: 737 PEPRCGGDYGAPQLGGGFGSGEYGPPPPPPHVNSIGSEYGVPDFGGPGYPEINPRHPSGP 796
+ GD + G GS +VN G PG PE P
Sbjct: 250 GDGHARGDSVSQGTGLAPGSPRKPGTSSIGNVNPGSYGPGSSGTWNPGRPEPGSAGTWNP 309
Query: 797 AGAYSEQKPEVVP-APAASVSNSPNPSSPAPQKSSPSSISDNEVHMPPPPLPGHGAT 852
P P + + NP P P + + E G +
Sbjct: 310 GRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNTGSSGS 366
Score = 37.1 bits (85), Expect = 0.026
Identities = 27/139 (19%), Positives = 41/139 (29%), Gaps = 3/139 (2%)
Query: 223 PDSMNVHFQCVIQVCRYNCPEPRCGGDYGAPQLGGGFGSGEYGPPPPPPHVNSIGSEYGV 282
+ ++ ++++ + GGD A G+G P P +SIG+
Sbjct: 225 LQEAPLEWKALLEMQQTKMVLETFGGDGHARGDSVSQGTGLAPGSPRKPGTSSIGNVN-- 282
Query: 283 PDFGGPGYPEINPRHPSGPAGAYSEQKPEVVP-APAASVSNSPNPSSPAPQKSSPSSISD 341
P GPG P A + P + P P S
Sbjct: 283 PGSYGPGSSGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGS 342
Query: 342 NEVHMPPPPLPGHGATYQT 360
P P PG T+ T
Sbjct: 343 AGTWNPGRPEPGSAGTWNT 361
Score = 37.1 bits (85), Expect = 0.026
Identities = 27/139 (19%), Positives = 41/139 (29%), Gaps = 3/139 (2%)
Query: 718 PDSMNVHFQCVIQVCRYNCPEPRCGGDYGAPQLGGGFGSGEYGPPPPPPHVNSIGSEYGV 777
+ ++ ++++ + GGD A G+G P P +SIG+
Sbjct: 225 LQEAPLEWKALLEMQQTKMVLETFGGDGHARGDSVSQGTGLAPGSPRKPGTSSIGNVN-- 282
Query: 778 PDFGGPGYPEINPRHPSGPAGAYSEQKPEVVP-APAASVSNSPNPSSPAPQKSSPSSISD 836
P GPG P A + P + P P S
Sbjct: 283 PGSYGPGSSGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGS 342
Query: 837 NEVHMPPPPLPGHGATYQT 855
P P PG T+ T
Sbjct: 343 AGTWNPGRPEPGSAGTWNT 361
Score = 36.0 bits (82), Expect = 0.061
Identities = 22/122 (18%), Positives = 30/122 (24%), Gaps = 7/122 (5%)
Query: 242 PEPRCGGDYGAPQLGGGFGSGEYGPPPPPPHVNSIGSEYGVPDFGGPGYPEINPRHPSGP 301
G G+P+ G G P P +S G P+ G G P
Sbjct: 259 VSQGTGLAPGSPRKPGTSSIGNVNPGSYGPG-SSGTWNPGRPEPGSAGTWNPGRPEPGSA 317
Query: 302 AGAYSEQKPEVVPAPAASVSNSP------NPSSPAPQKSSPSSISDNEVHMPPPPLPGHG 355
+ P NP P P + + + P GHG
Sbjct: 318 GTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNTGSSGSSSFRPDSSGHG 377
Query: 356 AT 357
Sbjct: 378 NI 379
Score = 36.0 bits (82), Expect = 0.061
Identities = 22/122 (18%), Positives = 30/122 (24%), Gaps = 7/122 (5%)
Query: 737 PEPRCGGDYGAPQLGGGFGSGEYGPPPPPPHVNSIGSEYGVPDFGGPGYPEINPRHPSGP 796
G G+P+ G G P P +S G P+ G G P
Sbjct: 259 VSQGTGLAPGSPRKPGTSSIGNVNPGSYGPG-SSGTWNPGRPEPGSAGTWNPGRPEPGSA 317
Query: 797 AGAYSEQKPEVVPAPAASVSNSP------NPSSPAPQKSSPSSISDNEVHMPPPPLPGHG 850
+ P NP P P + + + P GHG
Sbjct: 318 GTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNTGSSGSSSFRPDSSGHG 377
Query: 851 AT 852
Sbjct: 378 NI 379
Score = 34.8 bits (79), Expect = 0.14
Identities = 15/95 (15%), Positives = 25/95 (26%), Gaps = 3/95 (3%)
Query: 260 GSGEYGPPPPPPHVNSIGSEYGVPDFGGPGYPEINPRHPSGPAGAYSEQKPEVVPAPAAS 319
G E G G + G P +P P + P P ++
Sbjct: 297 GRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSA 356
Query: 320 VSNSPNPSSPAPQKSSPSSISDNEVHMPPPPLPGH 354
+ + S + + S + P P G
Sbjct: 357 GTWNTGSSGSSSFRPDSSGHGNIR---PSSPDWGT 388
Score = 34.8 bits (79), Expect = 0.14
Identities = 15/95 (15%), Positives = 25/95 (26%), Gaps = 3/95 (3%)
Query: 755 GSGEYGPPPPPPHVNSIGSEYGVPDFGGPGYPEINPRHPSGPAGAYSEQKPEVVPAPAAS 814
G E G G + G P +P P + P P ++
Sbjct: 297 GRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSA 356
Query: 815 VSNSPNPSSPAPQKSSPSSISDNEVHMPPPPLPGH 849
+ + S + + S + P P G
Sbjct: 357 GTWNTGSSGSSSFRPDSSGHGNIR---PSSPDWGT 388
Score = 30.2 bits (67), Expect = 3.3
Identities = 14/116 (12%), Positives = 24/116 (20%), Gaps = 3/116 (2%)
Query: 266 PPPPPPHVNSIGSEYGVPDFGGPGYPEINPRHPSGPAGAYSEQKPEVVPAPAASVSNSPN 325
P P + ++ + G + V + +
Sbjct: 213 ITGPVPREFKSQLQEAPLEWKALLEMQQTKMVLETFGGDGHARGDSVSQGTGLAPGSPRK 272
Query: 326 PSSPAPQKSSPSSISDNEVHMPPPPLPGHGATYQTVKRKGTVSEEGGDLVTLGGRP 381
P + + +P S PG E G GRP
Sbjct: 273 PGTSSIGNVNPGS---YGPGSSGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRP 325
Score = 30.2 bits (67), Expect = 3.3
Identities = 14/116 (12%), Positives = 24/116 (20%), Gaps = 3/116 (2%)
Query: 761 PPPPPPHVNSIGSEYGVPDFGGPGYPEINPRHPSGPAGAYSEQKPEVVPAPAASVSNSPN 820
P P + ++ + G + V + +
Sbjct: 213 ITGPVPREFKSQLQEAPLEWKALLEMQQTKMVLETFGGDGHARGDSVSQGTGLAPGSPRK 272
Query: 821 PSSPAPQKSSPSSISDNEVHMPPPPLPGHGATYQTVKRKGTVSEEGGDLVTLGGRP 876
P + + +P S PG E G GRP
Sbjct: 273 PGTSSIGNVNPGS---YGPGSSGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRP 325
Score = 29.4 bits (65), Expect = 5.5
Identities = 16/99 (16%), Positives = 23/99 (23%), Gaps = 5/99 (5%)
Query: 257 GGFGSGEYGPPPPPPHVNSIGSEYGVPDFGGPGYPEINPRHPSGPAGAYSEQKPEVVPAP 316
F S P + + V + G + + P P
Sbjct: 219 REFKSQLQEAPLEWKALLEMQQTKMVLETFGG-----DGHARGDSVSQGTGLAPGSPRKP 273
Query: 317 AASVSNSPNPSSPAPQKSSPSSISDNEVHMPPPPLPGHG 355
S + NP S P S + E PG
Sbjct: 274 GTSSIGNVNPGSYGPGSSGTWNPGRPEPGSAGTWNPGRP 312
Score = 29.4 bits (65), Expect = 5.5
Identities = 16/99 (16%), Positives = 23/99 (23%), Gaps = 5/99 (5%)
Query: 752 GGFGSGEYGPPPPPPHVNSIGSEYGVPDFGGPGYPEINPRHPSGPAGAYSEQKPEVVPAP 811
F S P + + V + G + + P P
Sbjct: 219 REFKSQLQEAPLEWKALLEMQQTKMVLETFGG-----DGHARGDSVSQGTGLAPGSPRKP 273
Query: 812 AASVSNSPNPSSPAPQKSSPSSISDNEVHMPPPPLPGHG 850
S + NP S P S + E PG
Sbjct: 274 GTSSIGNVNPGSYGPGSSGTWNPGRPEPGSAGTWNPGRP 312
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici
SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens}
PDB: 3cw1_A
Length = 231
Score = 37.7 bits (87), Expect = 0.010
Identities = 25/114 (21%), Positives = 33/114 (28%)
Query: 242 PEPRCGGDYGAPQLGGGFGSGEYGPPPPPPHVNSIGSEYGVPDFGGPGYPEINPRHPSGP 301
R A G G +G P P G V GGP + P+
Sbjct: 91 GIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTV 150
Query: 302 AGAYSEQKPEVVPAPAASVSNSPNPSSPAPQKSSPSSISDNEVHMPPPPLPGHG 355
A A + + AP P P + + P + M PP P G
Sbjct: 151 AAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMG 204
Score = 37.7 bits (87), Expect = 0.010
Identities = 25/114 (21%), Positives = 33/114 (28%)
Query: 737 PEPRCGGDYGAPQLGGGFGSGEYGPPPPPPHVNSIGSEYGVPDFGGPGYPEINPRHPSGP 796
R A G G +G P P G V GGP + P+
Sbjct: 91 GIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTV 150
Query: 797 AGAYSEQKPEVVPAPAASVSNSPNPSSPAPQKSSPSSISDNEVHMPPPPLPGHG 850
A A + + AP P P + + P + M PP P G
Sbjct: 151 AAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMG 204
Score = 34.2 bits (78), Expect = 0.14
Identities = 15/98 (15%), Positives = 20/98 (20%), Gaps = 6/98 (6%)
Query: 256 GGGFGSGEYGPPPPPPHVNSIGSEYGVPDFGGPGYPEINPRHPSGPAGAYSEQKPEVVPA 315
+ + + S G P PG P G P +
Sbjct: 138 SQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRP 197
Query: 316 PAASVSNSPNPSSPAPQKSSPSSISDNEVHMPPPPLPG 353
P P P PPP + G
Sbjct: 198 PMGPPMGIPPGRGTPMGMPPPGM------RPPPPGMRG 229
Score = 34.2 bits (78), Expect = 0.14
Identities = 15/98 (15%), Positives = 20/98 (20%), Gaps = 6/98 (6%)
Query: 751 GGGFGSGEYGPPPPPPHVNSIGSEYGVPDFGGPGYPEINPRHPSGPAGAYSEQKPEVVPA 810
+ + + S G P PG P G P +
Sbjct: 138 SQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRP 197
Query: 811 PAASVSNSPNPSSPAPQKSSPSSISDNEVHMPPPPLPG 848
P P P PPP + G
Sbjct: 198 PMGPPMGIPPGRGTPMGMPPPGM------RPPPPGMRG 229
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein,
abnormal nuclear; zinc-finger, beta barrel, VWA domain,
gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP:
a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Length = 926
Score = 38.7 bits (89), Expect = 0.011
Identities = 17/117 (14%), Positives = 28/117 (23%), Gaps = 8/117 (6%)
Query: 250 YGAPQLGGGFGS------GEYGPPPPPPHVNSIGSEYGVPDFGGPGYPEINPRHPSGPAG 303
Y QL G + ++ PP P + G+P P + + PA
Sbjct: 9 YPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMP--PQGAVPSMGQQQFLTPAQ 66
Query: 304 AYSEQKPEVVPAPAASVSNSPNPSSPAPQKSSPSSISDNEVHMPPPPLPGHGATYQT 360
Q+ + + P P + P Y
Sbjct: 67 EQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQ 123
Score = 38.7 bits (89), Expect = 0.011
Identities = 17/117 (14%), Positives = 28/117 (23%), Gaps = 8/117 (6%)
Query: 745 YGAPQLGGGFGS------GEYGPPPPPPHVNSIGSEYGVPDFGGPGYPEINPRHPSGPAG 798
Y QL G + ++ PP P + G+P P + + PA
Sbjct: 9 YPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMP--PQGAVPSMGQQQFLTPAQ 66
Query: 799 AYSEQKPEVVPAPAASVSNSPNPSSPAPQKSSPSSISDNEVHMPPPPLPGHGATYQT 855
Q+ + + P P + P Y
Sbjct: 67 EQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQ 123
Score = 37.9 bits (87), Expect = 0.020
Identities = 19/117 (16%), Positives = 28/117 (23%), Gaps = 3/117 (2%)
Query: 247 GGDYGAPQLGGGFGSGEYG---PPPPPPHVNSIGSEYGVPDFGGPGYPEINPRHPSGPAG 303
G G P G G+ P H + + D P ++P P
Sbjct: 42 YGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQV 101
Query: 304 AYSEQKPEVVPAPAASVSNSPNPSSPAPQKSSPSSISDNEVHMPPPPLPGHGATYQT 360
P + PS+ Q P + + P P T
Sbjct: 102 PVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPP 158
Score = 37.9 bits (87), Expect = 0.020
Identities = 19/117 (16%), Positives = 28/117 (23%), Gaps = 3/117 (2%)
Query: 742 GGDYGAPQLGGGFGSGEYG---PPPPPPHVNSIGSEYGVPDFGGPGYPEINPRHPSGPAG 798
G G P G G+ P H + + D P ++P P
Sbjct: 42 YGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQV 101
Query: 799 AYSEQKPEVVPAPAASVSNSPNPSSPAPQKSSPSSISDNEVHMPPPPLPGHGATYQT 855
P + PS+ Q P + + P P T
Sbjct: 102 PVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPP 158
Score = 34.0 bits (77), Expect = 0.29
Identities = 13/114 (11%), Positives = 25/114 (21%), Gaps = 4/114 (3%)
Query: 247 GGDYGAPQLGGGFGSGEYGPPPPPPHVNSIGSEYGVPDFGGPGYPEINPRHPSGPAGAYS 306
+ PQ G PP G F P +++ +
Sbjct: 26 PAQFMPPQDPAAAGMSYGQMGMPPQGA---VPSMGQQQFLTPAQEQLHQQIDQATTSMND 82
Query: 307 EQKPEV-VPAPAASVSNSPNPSSPAPQKSSPSSISDNEVHMPPPPLPGHGATYQ 359
V + P A + P + ++ P + +
Sbjct: 83 MHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMN 136
Score = 34.0 bits (77), Expect = 0.29
Identities = 13/114 (11%), Positives = 25/114 (21%), Gaps = 4/114 (3%)
Query: 742 GGDYGAPQLGGGFGSGEYGPPPPPPHVNSIGSEYGVPDFGGPGYPEINPRHPSGPAGAYS 801
+ PQ G PP G F P +++ +
Sbjct: 26 PAQFMPPQDPAAAGMSYGQMGMPPQGA---VPSMGQQQFLTPAQEQLHQQIDQATTSMND 82
Query: 802 EQKPEV-VPAPAASVSNSPNPSSPAPQKSSPSSISDNEVHMPPPPLPGHGATYQ 854
V + P A + P + ++ P + +
Sbjct: 83 MHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMN 136
Score = 32.9 bits (74), Expect = 0.63
Identities = 13/109 (11%), Positives = 27/109 (24%), Gaps = 5/109 (4%)
Query: 251 GAPQLGGGFGSGEYGPPPPPPHVNSI-GSEYGVPDFGGPGYPEINPRHPSGPAGAYSEQK 309
L +N + + D P++ + +
Sbjct: 58 QQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMA 117
Query: 310 PEVVPAPAASVSNSPNP----SSPAPQKSSPSSISDNEVHMPPPPLPGH 354
P+A++ + P P I+D + PP +P
Sbjct: 118 APAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPE 166
Score = 32.9 bits (74), Expect = 0.63
Identities = 13/109 (11%), Positives = 27/109 (24%), Gaps = 5/109 (4%)
Query: 746 GAPQLGGGFGSGEYGPPPPPPHVNSI-GSEYGVPDFGGPGYPEINPRHPSGPAGAYSEQK 804
L +N + + D P++ + +
Sbjct: 58 QQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMA 117
Query: 805 PEVVPAPAASVSNSPNP----SSPAPQKSSPSSISDNEVHMPPPPLPGH 849
P+A++ + P P I+D + PP +P
Sbjct: 118 APAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPE 166
Score = 32.5 bits (73), Expect = 0.82
Identities = 10/102 (9%), Positives = 20/102 (19%)
Query: 258 GFGSGEYGPPPPPPHVNSIGSEYGVPDFGGPGYPEINPRHPSGPAGAYSEQKPEVVPAPA 317
+ + + D G P A Q+ + PA
Sbjct: 8 VYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQE 67
Query: 318 ASVSNSPNPSSPAPQKSSPSSISDNEVHMPPPPLPGHGATYQ 359
++ + + P +P T
Sbjct: 68 QLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPL 109
Score = 32.5 bits (73), Expect = 0.82
Identities = 10/102 (9%), Positives = 20/102 (19%)
Query: 753 GFGSGEYGPPPPPPHVNSIGSEYGVPDFGGPGYPEINPRHPSGPAGAYSEQKPEVVPAPA 812
+ + + D G P A Q+ + PA
Sbjct: 8 VYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQE 67
Query: 813 ASVSNSPNPSSPAPQKSSPSSISDNEVHMPPPPLPGHGATYQ 854
++ + + P +P T
Sbjct: 68 QLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPL 109
Score = 29.4 bits (65), Expect = 8.2
Identities = 10/55 (18%), Positives = 14/55 (25%)
Query: 306 SEQKPEVVPAPAASVSNSPNPSSPAPQKSSPSSISDNEVHMPPPPLPGHGATYQT 360
S K V P + P Q P + + +P GA
Sbjct: 2 SHHKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSM 56
Score = 29.4 bits (65), Expect = 8.2
Identities = 10/55 (18%), Positives = 14/55 (25%)
Query: 801 SEQKPEVVPAPAASVSNSPNPSSPAPQKSSPSSISDNEVHMPPPPLPGHGATYQT 855
S K V P + P Q P + + +P GA
Sbjct: 2 SHHKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSM 56
>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB:
1dx1_A 1qlx_A 1qlz_A
Length = 219
Score = 36.7 bits (84), Expect = 0.020
Identities = 21/114 (18%), Positives = 30/114 (26%), Gaps = 10/114 (8%)
Query: 248 GDYGAPQLGGGFGSG-----EYGPPPPPPHVNSIGSEYGVPDFGGPGYPEINPRHPSGPA 302
G P+ GGG+ +G G P + G +G P GG G P
Sbjct: 1 GSKKRPKPGGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPH-GGGWGQPHG 59
Query: 303 GAYSEQKPEVVPAPAASVSNSPNPSSPAPQKSSPSSISDNEVHMPPPPLPGHGA 356
G + + P + K S + GA
Sbjct: 60 GGWGQPHGGGWGQPHGGGGWGQGGTHGQWNKPSKPKTNMK----HVAGAAAAGA 109
Score = 36.7 bits (84), Expect = 0.020
Identities = 21/114 (18%), Positives = 30/114 (26%), Gaps = 10/114 (8%)
Query: 743 GDYGAPQLGGGFGSG-----EYGPPPPPPHVNSIGSEYGVPDFGGPGYPEINPRHPSGPA 797
G P+ GGG+ +G G P + G +G P GG G P
Sbjct: 1 GSKKRPKPGGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPH-GGGWGQPHG 59
Query: 798 GAYSEQKPEVVPAPAASVSNSPNPSSPAPQKSSPSSISDNEVHMPPPPLPGHGA 851
G + + P + K S + GA
Sbjct: 60 GGWGQPHGGGWGQPHGGGGWGQGGTHGQWNKPSKPKTNMK----HVAGAAAAGA 109
Score = 36.0 bits (82), Expect = 0.042
Identities = 16/108 (14%), Positives = 25/108 (23%)
Query: 242 PEPRCGGDYGAPQLGGGFGSGEYGPPPPPPHVNSIGSEYGVPDFGGPGYPEINPRHPSGP 301
P G P GGG +G PH G +G G P G
Sbjct: 20 PGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGGW 79
Query: 302 AGAYSEQKPEVVPAPAASVSNSPNPSSPAPQKSSPSSISDNEVHMPPP 349
+ + P ++ + ++ P
Sbjct: 80 GQGGTHGQWNKPSKPKTNMKHVAGAAAAGAVVGGLGGYMLGSAMSRPL 127
Score = 36.0 bits (82), Expect = 0.042
Identities = 16/108 (14%), Positives = 25/108 (23%)
Query: 737 PEPRCGGDYGAPQLGGGFGSGEYGPPPPPPHVNSIGSEYGVPDFGGPGYPEINPRHPSGP 796
P G P GGG +G PH G +G G P G
Sbjct: 20 PGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGGW 79
Query: 797 AGAYSEQKPEVVPAPAASVSNSPNPSSPAPQKSSPSSISDNEVHMPPP 844
+ + P ++ + ++ P
Sbjct: 80 GQGGTHGQWNKPSKPKTNMKHVAGAAAAGAVVGGLGGYMLGSAMSRPL 127
Score = 35.6 bits (81), Expect = 0.048
Identities = 22/105 (20%), Positives = 31/105 (29%), Gaps = 3/105 (2%)
Query: 242 PEPRCGGDYGAPQLGGGFGS---GEYGPPPPPPHVNSIGSEYGVPDFGGPGYPEINPRHP 298
P GG GGG+G G +G P G +G P GG
Sbjct: 29 RYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGGWGQGGTHGQW 88
Query: 299 SGPAGAYSEQKPEVVPAPAASVSNSPNPSSPAPQKSSPSSISDNE 343
+ P+ + K A A +V S P ++
Sbjct: 89 NKPSKPKTNMKHVAGAAAAGAVVGGLGGYMLGSAMSRPLIHFGSD 133
Score = 35.6 bits (81), Expect = 0.048
Identities = 22/105 (20%), Positives = 31/105 (29%), Gaps = 3/105 (2%)
Query: 737 PEPRCGGDYGAPQLGGGFGS---GEYGPPPPPPHVNSIGSEYGVPDFGGPGYPEINPRHP 793
P GG GGG+G G +G P G +G P GG
Sbjct: 29 RYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGGWGQGGTHGQW 88
Query: 794 SGPAGAYSEQKPEVVPAPAASVSNSPNPSSPAPQKSSPSSISDNE 838
+ P+ + K A A +V S P ++
Sbjct: 89 NKPSKPKTNMKHVAGAAAAGAVVGGLGGYMLGSAMSRPLIHFGSD 133
>3qw9_A Transforming growth factor beta receptor type 3; cytokine receptor,
immunoglobulin domain, ZONA pellucida, TG ligand
CO-receptor; HET: NAG BMA FUC MAN; 2.00A {Rattus
norvegicus}
Length = 176
Score = 34.4 bits (78), Expect = 0.093
Identities = 10/107 (9%), Positives = 32/107 (29%), Gaps = 5/107 (4%)
Query: 145 VKIGQTMTMVLAIKDDENKFDMLVRNCVA---HDGKRAPIQLVDQHGCVVRPKIMSKFQK 201
V + + + +++ + ++ C + R + ++ C + K
Sbjct: 27 VAENEHVYVEVSVTKADQDLGFAIQTCFLSPYSNPDRMSDYTIIENICPKDDSVKFYSSK 86
Query: 202 IKNFGPSASVVSFAYFQ--AFKFPDSMNVHFQCVIQVCRYNCPEPRC 246
+F + V F ++ + C + +C +
Sbjct: 87 RVHFPIPHAEVDKKRFSFLFKSVFNTSLLFLHCELTLCSRKKGSLKL 133
Score = 34.4 bits (78), Expect = 0.093
Identities = 10/107 (9%), Positives = 32/107 (29%), Gaps = 5/107 (4%)
Query: 640 VKIGQTMTMVLAIKDDENKFDMLVRNCVA---HDGKRAPIQLVDQHGCVVRPKIMSKFQK 696
V + + + +++ + ++ C + R + ++ C + K
Sbjct: 27 VAENEHVYVEVSVTKADQDLGFAIQTCFLSPYSNPDRMSDYTIIENICPKDDSVKFYSSK 86
Query: 697 IKNFGPSASVVSFAYFQ--AFKFPDSMNVHFQCVIQVCRYNCPEPRC 741
+F + V F ++ + C + +C +
Sbjct: 87 RVHFPIPHAEVDKKRFSFLFKSVFNTSLLFLHCELTLCSRKKGSLKL 133
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1752
Score = 35.4 bits (81), Expect = 0.12
Identities = 23/83 (27%), Positives = 31/83 (37%), Gaps = 8/83 (9%)
Query: 257 GGFGSGEYGPPPPPPHVNSIGSEYGVPDFGGPGYPEINPRHPSGPAGAYSEQKPEVVPAP 316
G G G+YG + S F P PS YS P +P
Sbjct: 1515 GREGFGDYGLLGAASPYKGVQSPGYTSPFSSAMSPGYGLTSPS-----YSPSSPGYSTSP 1569
Query: 317 AASVSNSP--NPSSPAPQKSSPS 337
A +SP +P+SP+ +SPS
Sbjct: 1570 AYM-PSSPSYSPTSPSYSPTSPS 1591
Score = 35.4 bits (81), Expect = 0.12
Identities = 23/83 (27%), Positives = 31/83 (37%), Gaps = 8/83 (9%)
Query: 752 GGFGSGEYGPPPPPPHVNSIGSEYGVPDFGGPGYPEINPRHPSGPAGAYSEQKPEVVPAP 811
G G G+YG + S F P PS YS P +P
Sbjct: 1515 GREGFGDYGLLGAASPYKGVQSPGYTSPFSSAMSPGYGLTSPS-----YSPSSPGYSTSP 1569
Query: 812 AASVSNSP--NPSSPAPQKSSPS 832
A +SP +P+SP+ +SPS
Sbjct: 1570 AYM-PSSPSYSPTSPSYSPTSPS 1591
Score = 34.7 bits (79), Expect = 0.20
Identities = 30/114 (26%), Positives = 42/114 (36%), Gaps = 14/114 (12%)
Query: 251 GAPQLGGGFGSGEYGPPPPPPHVNSIGSEYGVPDFGGPGYPEINPRH-PSGPAGA----Y 305
G+ G G G P V S G PGY +P + PS P + Y
Sbjct: 1512 GSEGREGFGDYGLLGAASPYKGVQSPGYTSPFSSAMSPGYGLTSPSYSPSSPGYSTSPAY 1571
Query: 306 SEQKPEVVPA-PAASVSN------SPNPS--SPAPQKSSPSSISDNEVHMPPPP 350
P P P+ S ++ SP+ S SP+ +SPS + + P P
Sbjct: 1572 MPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSP 1625
Score = 34.7 bits (79), Expect = 0.20
Identities = 30/114 (26%), Positives = 42/114 (36%), Gaps = 14/114 (12%)
Query: 746 GAPQLGGGFGSGEYGPPPPPPHVNSIGSEYGVPDFGGPGYPEINPRH-PSGPAGA----Y 800
G+ G G G P V S G PGY +P + PS P + Y
Sbjct: 1512 GSEGREGFGDYGLLGAASPYKGVQSPGYTSPFSSAMSPGYGLTSPSYSPSSPGYSTSPAY 1571
Query: 801 SEQKPEVVPA-PAASVSN------SPNPS--SPAPQKSSPSSISDNEVHMPPPP 845
P P P+ S ++ SP+ S SP+ +SPS + + P P
Sbjct: 1572 MPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSP 1625
Score = 32.7 bits (74), Expect = 0.85
Identities = 24/94 (25%), Positives = 35/94 (37%), Gaps = 5/94 (5%)
Query: 261 SGEYGPPPPPPHVNSIGSEYGVPDF--GGPGYPEINPRHPSGPAGAYSEQKPEVVPAPAA 318
S Y P P S P + P Y +P S + +YS P P +
Sbjct: 1624 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS-YSPTSPSYSPTSPSYSPTSPS 1682
Query: 319 SVSNSPN--PSSPAPQKSSPSSISDNEVHMPPPP 350
SP+ P+SP+ +SPS + + P P
Sbjct: 1683 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1716
Score = 32.7 bits (74), Expect = 0.85
Identities = 24/94 (25%), Positives = 35/94 (37%), Gaps = 5/94 (5%)
Query: 756 SGEYGPPPPPPHVNSIGSEYGVPDF--GGPGYPEINPRHPSGPAGAYSEQKPEVVPAPAA 813
S Y P P S P + P Y +P S + +YS P P +
Sbjct: 1624 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS-YSPTSPSYSPTSPSYSPTSPS 1682
Query: 814 SVSNSPN--PSSPAPQKSSPSSISDNEVHMPPPP 845
SP+ P+SP+ +SPS + + P P
Sbjct: 1683 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1716
Score = 32.4 bits (73), Expect = 1.0
Identities = 22/89 (24%), Positives = 31/89 (34%), Gaps = 3/89 (3%)
Query: 252 APQLGGGFGSGEYGPPPPPPHVNSIGSEYGVPDFGG--PGYPEINPRHPSGPAGAYSEQK 309
+P G S Y P P S P + P Y +P + S + +YS
Sbjct: 1559 SPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SATSPSYSPTS 1617
Query: 310 PEVVPAPAASVSNSPNPSSPAPQKSSPSS 338
P P + SP+ S +P S S
Sbjct: 1618 PSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1646
Score = 32.4 bits (73), Expect = 1.0
Identities = 22/89 (24%), Positives = 31/89 (34%), Gaps = 3/89 (3%)
Query: 747 APQLGGGFGSGEYGPPPPPPHVNSIGSEYGVPDFGG--PGYPEINPRHPSGPAGAYSEQK 804
+P G S Y P P S P + P Y +P + S + +YS
Sbjct: 1559 SPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SATSPSYSPTS 1617
Query: 805 PEVVPAPAASVSNSPNPSSPAPQKSSPSS 833
P P + SP+ S +P S S
Sbjct: 1618 PSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1646
Score = 32.0 bits (72), Expect = 1.2
Identities = 25/94 (26%), Positives = 36/94 (38%), Gaps = 5/94 (5%)
Query: 261 SGEYGPPPPPPHVNSIGSEYGVPDFGGPGYPEINPRHP--SGPAGAYSEQKPEVVPAPAA 318
S Y P P S P + P P +P P S + +YS P P +
Sbjct: 1638 SPSYSPTSPSYSPTSPSYSPTSPSYS-PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1696
Query: 319 SVSNSPN--PSSPAPQKSSPSSISDNEVHMPPPP 350
SP+ P+SP+ +SPS + + P P
Sbjct: 1697 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1730
Score = 32.0 bits (72), Expect = 1.2
Identities = 25/94 (26%), Positives = 36/94 (38%), Gaps = 5/94 (5%)
Query: 756 SGEYGPPPPPPHVNSIGSEYGVPDFGGPGYPEINPRHP--SGPAGAYSEQKPEVVPAPAA 813
S Y P P S P + P P +P P S + +YS P P +
Sbjct: 1638 SPSYSPTSPSYSPTSPSYSPTSPSYS-PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1696
Query: 814 SVSNSPN--PSSPAPQKSSPSSISDNEVHMPPPP 845
SP+ P+SP+ +SPS + + P P
Sbjct: 1697 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1730
Score = 31.6 bits (71), Expect = 1.7
Identities = 23/81 (28%), Positives = 31/81 (38%), Gaps = 5/81 (6%)
Query: 261 SGEYGPPPPPPHVNSIGSEYGVPDFGGPGYPEINPRHP--SGPAGAYSEQKPEVVPAPAA 318
S Y P P S P + P P +P P S + +YS P P +
Sbjct: 1673 SPSYSPTSPSYSPTSPSYSPTSPSYS-PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1731
Query: 319 SVSNSPNPS--SPAPQKSSPS 337
SP+ S SP+ +SPS
Sbjct: 1732 YSPTSPSYSPTSPSYSPTSPS 1752
Score = 31.6 bits (71), Expect = 1.7
Identities = 23/81 (28%), Positives = 31/81 (38%), Gaps = 5/81 (6%)
Query: 756 SGEYGPPPPPPHVNSIGSEYGVPDFGGPGYPEINPRHP--SGPAGAYSEQKPEVVPAPAA 813
S Y P P S P + P P +P P S + +YS P P +
Sbjct: 1673 SPSYSPTSPSYSPTSPSYSPTSPSYS-PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1731
Query: 814 SVSNSPNPS--SPAPQKSSPS 832
SP+ S SP+ +SPS
Sbjct: 1732 YSPTSPSYSPTSPSYSPTSPS 1752
Score = 30.8 bits (69), Expect = 2.8
Identities = 22/102 (21%), Positives = 35/102 (34%), Gaps = 6/102 (5%)
Query: 250 YGAPQLGGGFGSGEYGPPPPPPHVNSIGSEYGVPDFGGPGYPEINPRH-PSGPAGAYSEQ 308
Y A S Y P P S P Y +P + P+ P+ + +
Sbjct: 1606 YSATSPSYSPTSPSYSPTSPSYSPTSPS-----YSPTSPSYSPTSPSYSPTSPSYSPTSP 1660
Query: 309 KPEVVPAPAASVSNSPNPSSPAPQKSSPSSISDNEVHMPPPP 350
+ S S +P+SP+ +SPS + + P P
Sbjct: 1661 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1702
Score = 30.8 bits (69), Expect = 2.8
Identities = 22/102 (21%), Positives = 35/102 (34%), Gaps = 6/102 (5%)
Query: 745 YGAPQLGGGFGSGEYGPPPPPPHVNSIGSEYGVPDFGGPGYPEINPRH-PSGPAGAYSEQ 803
Y A S Y P P S P Y +P + P+ P+ + +
Sbjct: 1606 YSATSPSYSPTSPSYSPTSPSYSPTSPS-----YSPTSPSYSPTSPSYSPTSPSYSPTSP 1660
Query: 804 KPEVVPAPAASVSNSPNPSSPAPQKSSPSSISDNEVHMPPPP 845
+ S S +P+SP+ +SPS + + P P
Sbjct: 1661 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1702
Score = 30.4 bits (68), Expect = 3.6
Identities = 21/106 (19%), Positives = 32/106 (30%), Gaps = 5/106 (4%)
Query: 256 GGGFGSGEYGPPPPPPHVNSIGSEYGVPDFGGPGYPEINPRHPSG--PAGAYSEQKPEVV 313
G G G+ + P+ S + G G P +P G + +
Sbjct: 1470 GSGMGTSQLPEGAGTPYERSPMVDSGFV--GSPDAAAFSPLVQGGSEGREGFGDYGLLGA 1527
Query: 314 PAPAASVSNSPNPSSPAPQKSSPSSISDNEVHMPPPPLPGHGATYQ 359
+P V SP +SP SP + + P P Y
Sbjct: 1528 ASPYKGVQ-SPGYTSPFSSAMSPGYGLTSPSYSPSSPGYSTSPAYM 1572
Score = 30.4 bits (68), Expect = 3.6
Identities = 21/106 (19%), Positives = 32/106 (30%), Gaps = 5/106 (4%)
Query: 751 GGGFGSGEYGPPPPPPHVNSIGSEYGVPDFGGPGYPEINPRHPSG--PAGAYSEQKPEVV 808
G G G+ + P+ S + G G P +P G + +
Sbjct: 1470 GSGMGTSQLPEGAGTPYERSPMVDSGFV--GSPDAAAFSPLVQGGSEGREGFGDYGLLGA 1527
Query: 809 PAPAASVSNSPNPSSPAPQKSSPSSISDNEVHMPPPPLPGHGATYQ 854
+P V SP +SP SP + + P P Y
Sbjct: 1528 ASPYKGVQ-SPGYTSPFSSAMSPGYGLTSPSYSPSSPGYSTSPAYM 1572
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid
cyclase fold, DDXXXXD motif, NDXXSXXXE MOT
methylisoborneol biosynthesis; HET: GST; 1.80A
{Streptomyces coelicolor} PDB: 3v1x_A*
Length = 433
Score = 34.7 bits (79), Expect = 0.16
Identities = 22/86 (25%), Positives = 25/86 (29%), Gaps = 10/86 (11%)
Query: 265 GPPPPPPHVNSIGSEYGVPDFGGPGYPEINPRHPSGPAGAYSEQKPEVVPAPAASVSNSP 324
P PPPP G P G + R GP G APA P
Sbjct: 47 DPAPPPPPA----PAAGNPPDTVTG-DSVLQRILRGPTGP-----GTTSLAPAVRYGRQP 96
Query: 325 NPSSPAPQKSSPSSISDNEVHMPPPP 350
P +PA + H P P
Sbjct: 97 GPEAPASAPPAAGRAVPGLYHHPVPE 122
Score = 34.7 bits (79), Expect = 0.16
Identities = 22/86 (25%), Positives = 25/86 (29%), Gaps = 10/86 (11%)
Query: 760 GPPPPPPHVNSIGSEYGVPDFGGPGYPEINPRHPSGPAGAYSEQKPEVVPAPAASVSNSP 819
P PPPP G P G + R GP G APA P
Sbjct: 47 DPAPPPPPA----PAAGNPPDTVTG-DSVLQRILRGPTGP-----GTTSLAPAVRYGRQP 96
Query: 820 NPSSPAPQKSSPSSISDNEVHMPPPP 845
P +PA + H P P
Sbjct: 97 GPEAPASAPPAAGRAVPGLYHHPVPE 122
Score = 34.3 bits (78), Expect = 0.21
Identities = 15/93 (16%), Positives = 23/93 (24%), Gaps = 11/93 (11%)
Query: 265 GPPPPPPHVNSIGSEYGVPDFGGPGYPEINPRHPSGPAGAYSEQKPEVVPAPAASVSNSP 324
P V S S++ P+ P P PA P + +
Sbjct: 20 HMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGN--------PPDTVTGDSVL 71
Query: 325 NPSSPAPQKSSPSSISDNEVHMPPPPLPGHGAT 357
P +S++ PG A
Sbjct: 72 QRILRGPTGPGTTSLAPAV---RYGRQPGPEAP 101
Score = 34.3 bits (78), Expect = 0.21
Identities = 15/93 (16%), Positives = 23/93 (24%), Gaps = 11/93 (11%)
Query: 760 GPPPPPPHVNSIGSEYGVPDFGGPGYPEINPRHPSGPAGAYSEQKPEVVPAPAASVSNSP 819
P V S S++ P+ P P PA P + +
Sbjct: 20 HMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGN--------PPDTVTGDSVL 71
Query: 820 NPSSPAPQKSSPSSISDNEVHMPPPPLPGHGAT 852
P +S++ PG A
Sbjct: 72 QRILRGPTGPGTTSLAPAV---RYGRQPGPEAP 101
Score = 32.4 bits (73), Expect = 0.72
Identities = 10/63 (15%), Positives = 20/63 (31%), Gaps = 1/63 (1%)
Query: 295 PRHPSGPAGAYSEQKPEVVPAPAASVSNSPNPSSPAPQKSSPSSISDNEVHMPPPPLPGH 354
H +G V+P+ + + + S ++ P + P + P P
Sbjct: 5 HHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDP-APPPPPAPAAGNPPD 63
Query: 355 GAT 357
T
Sbjct: 64 TVT 66
Score = 32.4 bits (73), Expect = 0.72
Identities = 10/63 (15%), Positives = 20/63 (31%), Gaps = 1/63 (1%)
Query: 790 PRHPSGPAGAYSEQKPEVVPAPAASVSNSPNPSSPAPQKSSPSSISDNEVHMPPPPLPGH 849
H +G V+P+ + + + S ++ P + P + P P
Sbjct: 5 HHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDP-APPPPPAPAAGNPPD 63
Query: 850 GAT 852
T
Sbjct: 64 TVT 66
>3a58_A Exocyst complex component SEC3; protein complex, PH domain, GTPase,
membrane traffic, coiled coil, exocytosis,
phosphoprotein; HET: GNP; 2.60A {Saccharomyces
cerevisiae}
Length = 320
Score = 33.4 bits (75), Expect = 0.36
Identities = 8/93 (8%), Positives = 19/93 (20%), Gaps = 5/93 (5%)
Query: 258 GFGSGEYGPPPPPPHVNSIGSEYGVPDFGGPGYPEINPRHPSGPAGAYSEQKPEVVPAPA 317
+ + I + P N + + P P
Sbjct: 230 NWDLSLFYLDERSYQRAVITN--RPGSVSPIKSPTSNFTTNTTQS---VGSVPFSAPTER 284
Query: 318 ASVSNSPNPSSPAPQKSSPSSISDNEVHMPPPP 350
S + + + + S ++ P
Sbjct: 285 TRRSETESVNPVSTPASVEYHAGMKSLNKAPYS 317
Score = 33.4 bits (75), Expect = 0.36
Identities = 8/93 (8%), Positives = 19/93 (20%), Gaps = 5/93 (5%)
Query: 753 GFGSGEYGPPPPPPHVNSIGSEYGVPDFGGPGYPEINPRHPSGPAGAYSEQKPEVVPAPA 812
+ + I + P N + + P P
Sbjct: 230 NWDLSLFYLDERSYQRAVITN--RPGSVSPIKSPTSNFTTNTTQS---VGSVPFSAPTER 284
Query: 813 ASVSNSPNPSSPAPQKSSPSSISDNEVHMPPPP 845
S + + + + S ++ P
Sbjct: 285 TRRSETESVNPVSTPASVEYHAGMKSLNKAPYS 317
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller,
superbarrel; HET: PQQ; 1.50A {Acinetobacter
calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A*
1qbi_A
Length = 454
Score = 33.0 bits (75), Expect = 0.49
Identities = 18/150 (12%), Positives = 33/150 (22%), Gaps = 2/150 (1%)
Query: 242 PEPRCGGDYGAPQLGGGFGSGEYGPPPPPPHVNSIGSEYGVPDFGG-PGYPEINPRHPSG 300
P D + + + + V G + P
Sbjct: 266 PNVAGYKDDSGYAYANYSAAANKSIKDLAQNGVKVAAGVPVTKESEWTGKNFVPPLKTLY 325
Query: 301 PAGAYSEQKPEVVPAPAASVSNSPNPSSPAPQKSSPSSISDNEVHMPPPPLPGHGATYQT 360
+ PSS K +I+ E + P L
Sbjct: 326 TVQDTYNYNDPTCGEMTYICWPTVAPSSAYVYKGGKKAITGWENTLLVPSLKRGVIFRIK 385
Query: 361 VKRKGTVS-EEGGDLVTLGGRPRSVEIFPD 389
+ + + ++ + R R V PD
Sbjct: 386 LDPTYSTTYDDAVPMFKSNNRYRDVIASPD 415
Score = 33.0 bits (75), Expect = 0.49
Identities = 18/150 (12%), Positives = 33/150 (22%), Gaps = 2/150 (1%)
Query: 737 PEPRCGGDYGAPQLGGGFGSGEYGPPPPPPHVNSIGSEYGVPDFGG-PGYPEINPRHPSG 795
P D + + + + V G + P
Sbjct: 266 PNVAGYKDDSGYAYANYSAAANKSIKDLAQNGVKVAAGVPVTKESEWTGKNFVPPLKTLY 325
Query: 796 PAGAYSEQKPEVVPAPAASVSNSPNPSSPAPQKSSPSSISDNEVHMPPPPLPGHGATYQT 855
+ PSS K +I+ E + P L
Sbjct: 326 TVQDTYNYNDPTCGEMTYICWPTVAPSSAYVYKGGKKAITGWENTLLVPSLKRGVIFRIK 385
Query: 856 VKRKGTVS-EEGGDLVTLGGRPRSVEIFPD 884
+ + + ++ + R R V PD
Sbjct: 386 LDPTYSTTYDDAVPMFKSNNRYRDVIASPD 415
>1mv3_A MYC box dependent interacting protein 1; tumor suppressor,
endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 213
Score = 31.6 bits (70), Expect = 0.88
Identities = 15/93 (16%), Positives = 24/93 (25%)
Query: 265 GPPPPPPHVNSIGSEYGVPDFGGPGYPEINPRHPSGPAGAYSEQKPEVVPAPAASVSNSP 324
GPP PPP ++ E P +E A+ + P
Sbjct: 38 GPPVPPPPKHTPSKEVKQEQILSLFEDTFVPEISVTTPSQPAEASEVAGGTQPAAGAQEP 97
Query: 325 NPSSPAPQKSSPSSISDNEVHMPPPPLPGHGAT 357
++ + SS E G +
Sbjct: 98 GETAASEAASSSLPAVVVETFPATVNGTVEGGS 130
Score = 31.6 bits (70), Expect = 0.88
Identities = 15/93 (16%), Positives = 24/93 (25%)
Query: 760 GPPPPPPHVNSIGSEYGVPDFGGPGYPEINPRHPSGPAGAYSEQKPEVVPAPAASVSNSP 819
GPP PPP ++ E P +E A+ + P
Sbjct: 38 GPPVPPPPKHTPSKEVKQEQILSLFEDTFVPEISVTTPSQPAEASEVAGGTQPAAGAQEP 97
Query: 820 NPSSPAPQKSSPSSISDNEVHMPPPPLPGHGAT 852
++ + SS E G +
Sbjct: 98 GETAASEAASSSLPAVVVETFPATVNGTVEGGS 130
Score = 30.0 bits (66), Expect = 2.8
Identities = 25/107 (23%), Positives = 31/107 (28%), Gaps = 2/107 (1%)
Query: 259 FGSGEYGPPPPPPH-VNSIGSEYGVPDFGGPGYPEINPRHPSGPAGAYSEQKPEVVPAPA 317
G PPPP + E + F PEI+ PS PA A SE PA
Sbjct: 35 LRKGPPVPPPPKHTPSKEVKQEQILSLFEDTFVPEISVTTPSQPAEA-SEVAGGTQPAAG 93
Query: 318 ASVSNSPNPSSPAPQKSSPSSISDNEVHMPPPPLPGHGATYQTVKRK 364
A S A + + G GA +
Sbjct: 94 AQEPGETAASEAASSSLPAVVVETFPATVNGTVEGGSGAGRLDLPPG 140
Score = 30.0 bits (66), Expect = 2.8
Identities = 25/107 (23%), Positives = 31/107 (28%), Gaps = 2/107 (1%)
Query: 754 FGSGEYGPPPPPPH-VNSIGSEYGVPDFGGPGYPEINPRHPSGPAGAYSEQKPEVVPAPA 812
G PPPP + E + F PEI+ PS PA A SE PA
Sbjct: 35 LRKGPPVPPPPKHTPSKEVKQEQILSLFEDTFVPEISVTTPSQPAEA-SEVAGGTQPAAG 93
Query: 813 ASVSNSPNPSSPAPQKSSPSSISDNEVHMPPPPLPGHGATYQTVKRK 859
A S A + + G GA +
Sbjct: 94 AQEPGETAASEAASSSLPAVVVETFPATVNGTVEGGSGAGRLDLPPG 140
>2y8l_A 5'-AMP-activated protein kinase catalytic subunit; transferase,
nucleotide-binding, serine/threonine-protein KI; HET:
ADP AMP; 2.50A {Rattus norvegicus} PDB: 2y8q_A* 2ya3_A*
Length = 173
Score = 30.7 bits (68), Expect = 1.3
Identities = 11/71 (15%), Positives = 19/71 (26%), Gaps = 2/71 (2%)
Query: 284 DFGGPGYPEINPRHPSGPAGAYSEQKPEVVPAPAASVSNSPNPSSPAPQKSSPSSISDNE 343
DF + + + S + + S SS +S+ +
Sbjct: 85 DFRSIDDEITEAKSGTATPQRSGSISNYRSCQRSDSDAEAQGKPSEVSLTSSVTSLDSSP 144
Query: 344 VHMPPPPLPGH 354
V P PG
Sbjct: 145 V--DVAPRPGS 153
Score = 30.7 bits (68), Expect = 1.3
Identities = 11/71 (15%), Positives = 19/71 (26%), Gaps = 2/71 (2%)
Query: 779 DFGGPGYPEINPRHPSGPAGAYSEQKPEVVPAPAASVSNSPNPSSPAPQKSSPSSISDNE 838
DF + + + S + + S SS +S+ +
Sbjct: 85 DFRSIDDEITEAKSGTATPQRSGSISNYRSCQRSDSDAEAQGKPSEVSLTSSVTSLDSSP 144
Query: 839 VHMPPPPLPGH 849
V P PG
Sbjct: 145 V--DVAPRPGS 153
>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane
fusion, viral P glycoprotein B, HSV-1, membrane; HET:
NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A*
3nwd_A*
Length = 703
Score = 31.9 bits (72), Expect = 1.3
Identities = 20/132 (15%), Positives = 32/132 (24%), Gaps = 25/132 (18%)
Query: 294 NPRHPSGPAGAYSEQKPEVVPAPAASVSNSPNPSSPAPQKSSPSSISDNEVHMPPPPLPG 353
+P P+ P A + +P AP + + PP G
Sbjct: 1 DPAAPTSPGTPGVA--AATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAG 58
Query: 354 HGATYQTVKRKGTVSEE------------------GGDLVTLGGRPRSVEIFPDELRGAR 395
AT G +V +PR P+ +
Sbjct: 59 DNATVAAGHATLREHLRDIKAENTDANFYVCPPPTGATVVQF-EQPRRCPTRPEG----Q 113
Query: 396 RRRDTILHVYKR 407
+ I V+K
Sbjct: 114 NYTEGIAVVFKE 125
Score = 31.9 bits (72), Expect = 1.3
Identities = 20/132 (15%), Positives = 32/132 (24%), Gaps = 25/132 (18%)
Query: 789 NPRHPSGPAGAYSEQKPEVVPAPAASVSNSPNPSSPAPQKSSPSSISDNEVHMPPPPLPG 848
+P P+ P A + +P AP + + PP G
Sbjct: 1 DPAAPTSPGTPGVA--AATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAG 58
Query: 849 HGATYQTVKRKGTVSEE------------------GGDLVTLGGRPRSVEIFPDELRGAR 890
AT G +V +PR P+ +
Sbjct: 59 DNATVAAGHATLREHLRDIKAENTDANFYVCPPPTGATVVQF-EQPRRCPTRPEG----Q 113
Query: 891 RRRDTILHVYKR 902
+ I V+K
Sbjct: 114 NYTEGIAVVFKE 125
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus
interaction, metal-binding, nucleus, receptor,
transcription, transcription regulation, zinc-FIN
activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB:
3dzu_A* 3e00_A*
Length = 467
Score = 31.6 bits (71), Expect = 1.6
Identities = 20/91 (21%), Positives = 27/91 (29%), Gaps = 6/91 (6%)
Query: 266 PPPPPPHVNSIGSEYGVPDFGGPGYPEINPRHPSGPAGAYSEQKPEVVPAPAASVSNSPN 325
+ S P G G HPS G S P + +P +++S+ N
Sbjct: 10 DDDDKMFSTQVNSSLTSP--TGRGSMAAPSLHPSLGPGIGS---PGQLHSPISTLSSPIN 64
Query: 326 -PSSPAPQKSSPSSISDNEVHMPPPPLPGHG 355
P SSP V P G
Sbjct: 65 GMGPPFSVISSPMGPHSMSVPTTPTLGFSTG 95
Score = 31.6 bits (71), Expect = 1.6
Identities = 20/91 (21%), Positives = 27/91 (29%), Gaps = 6/91 (6%)
Query: 761 PPPPPPHVNSIGSEYGVPDFGGPGYPEINPRHPSGPAGAYSEQKPEVVPAPAASVSNSPN 820
+ S P G G HPS G S P + +P +++S+ N
Sbjct: 10 DDDDKMFSTQVNSSLTSP--TGRGSMAAPSLHPSLGPGIGS---PGQLHSPISTLSSPIN 64
Query: 821 -PSSPAPQKSSPSSISDNEVHMPPPPLPGHG 850
P SSP V P G
Sbjct: 65 GMGPPFSVISSPMGPHSMSVPTTPTLGFSTG 95
>2wvr_C DNA replication factor CDT1; DNA replication license, DNA
replication inhibitor, phosphoprotein, UBL conjugation,
DNA-binding, polymorphism; HET: DNA; 3.30A {Homo
sapiens} PDB: 2klo_A*
Length = 546
Score = 31.2 bits (69), Expect = 2.1
Identities = 10/56 (17%), Positives = 18/56 (32%)
Query: 295 PRHPSGPAGAYSEQKPEVVPAPAASVSNSPNPSSPAPQKSSPSSISDNEVHMPPPP 350
R GP + P+PA +P ++ +K + + PP
Sbjct: 11 ARRRPGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPA 66
Score = 31.2 bits (69), Expect = 2.1
Identities = 10/56 (17%), Positives = 18/56 (32%)
Query: 790 PRHPSGPAGAYSEQKPEVVPAPAASVSNSPNPSSPAPQKSSPSSISDNEVHMPPPP 845
R GP + P+PA +P ++ +K + + PP
Sbjct: 11 ARRRPGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPA 66
Score = 28.9 bits (63), Expect = 9.9
Identities = 12/70 (17%), Positives = 26/70 (37%), Gaps = 1/70 (1%)
Query: 305 YSEQKP-EVVPAPAASVSNSPNPSSPAPQKSSPSSISDNEVHMPPPPLPGHGATYQTVKR 363
++ ++P AP +P+P+ PA + + ++ + PP A +R
Sbjct: 10 FARRRPGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRR 69
Query: 364 KGTVSEEGGD 373
+E
Sbjct: 70 LRLSVDEVSS 79
Score = 28.9 bits (63), Expect = 9.9
Identities = 12/70 (17%), Positives = 26/70 (37%), Gaps = 1/70 (1%)
Query: 800 YSEQKP-EVVPAPAASVSNSPNPSSPAPQKSSPSSISDNEVHMPPPPLPGHGATYQTVKR 858
++ ++P AP +P+P+ PA + + ++ + PP A +R
Sbjct: 10 FARRRPGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRR 69
Query: 859 KGTVSEEGGD 868
+E
Sbjct: 70 LRLSVDEVSS 79
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Length = 263
Score = 30.1 bits (67), Expect = 2.9
Identities = 27/125 (21%), Positives = 38/125 (30%), Gaps = 12/125 (9%)
Query: 289 GYPEINPRHPSGPAGAYSEQKPEVVPAPAASVSNSPNPSSPAPQKSSPSSISDNEVHMPP 348
G E+ SG G ++ + A +VS P P P+ E P
Sbjct: 10 GLLELRCGAGSGAGGERWQRVLLSLAEDALTVS--PADGEPGPEPEPAQLNGAAEPGAAP 67
Query: 349 PPLP-GHGATYQTVKRKGTVSEEGGDLVTLGGRPRSVEIF--------PDELRGARRRRD 399
P LP + V + G + GGR + I + A D
Sbjct: 68 PQLPEALLLQRRRVTVRKA-DAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGD 126
Query: 400 TILHV 404
IL V
Sbjct: 127 AILSV 131
Score = 30.1 bits (67), Expect = 2.9
Identities = 27/125 (21%), Positives = 38/125 (30%), Gaps = 12/125 (9%)
Query: 784 GYPEINPRHPSGPAGAYSEQKPEVVPAPAASVSNSPNPSSPAPQKSSPSSISDNEVHMPP 843
G E+ SG G ++ + A +VS P P P+ E P
Sbjct: 10 GLLELRCGAGSGAGGERWQRVLLSLAEDALTVS--PADGEPGPEPEPAQLNGAAEPGAAP 67
Query: 844 PPLP-GHGATYQTVKRKGTVSEEGGDLVTLGGRPRSVEIF--------PDELRGARRRRD 894
P LP + V + G + GGR + I + A D
Sbjct: 68 PQLPEALLLQRRRVTVRKA-DAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGD 126
Query: 895 TILHV 899
IL V
Sbjct: 127 AILSV 131
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase,
transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7
Length = 535
Score = 30.2 bits (68), Expect = 3.5
Identities = 15/83 (18%), Positives = 25/83 (30%), Gaps = 4/83 (4%)
Query: 283 PDFGGPGYPEINPRHPSGPAGAYSEQKPEVVPAPAASVSNSPNPSSPAPQKSSPSSI--- 339
P + P AG + + PA++ + ++ AP + P
Sbjct: 7 PKDASQRRRSLEPAENVHGAGGGAFPASQTPSKPASADGHRGPSAAFAPAAAEPKLFGGF 66
Query: 340 -SDNEVHMPPPPLPGHGATYQTV 361
S + V P P G V
Sbjct: 67 NSSDTVTSPQRAGPLAGGVTTFV 89
Score = 30.2 bits (68), Expect = 3.5
Identities = 15/83 (18%), Positives = 25/83 (30%), Gaps = 4/83 (4%)
Query: 778 PDFGGPGYPEINPRHPSGPAGAYSEQKPEVVPAPAASVSNSPNPSSPAPQKSSPSSI--- 834
P + P AG + + PA++ + ++ AP + P
Sbjct: 7 PKDASQRRRSLEPAENVHGAGGGAFPASQTPSKPASADGHRGPSAAFAPAAAEPKLFGGF 66
Query: 835 -SDNEVHMPPPPLPGHGATYQTV 856
S + V P P G V
Sbjct: 67 NSSDTVTSPQRAGPLAGGVTTFV 89
>2qlv_B Protein SIP2, protein SPM2; heterotrimer, ATP-binding, carbohydrate
metabolism, kinase, membrane, nucleotide-binding,
nucleus; 2.60A {Saccharomyces cerevisiae} SCOP:
b.1.18.21 d.353.1.1
Length = 252
Score = 30.0 bits (66), Expect = 3.7
Identities = 16/89 (17%), Positives = 21/89 (23%), Gaps = 8/89 (8%)
Query: 266 PPPPPPHVNSIGSEYGVPDFGGPGYPEINPRHPSGPAGAYSEQKPEVVPAPAASVSNSPN 325
PP + PD G GY + P Y+ P V P+
Sbjct: 106 RPPTSDRSSIALQIGKDPDDFGDGYTRFHEDLSPRPPLEYTTDIPAVFTDPSVMERYYYT 165
Query: 326 PSSPAPQKSSPSSISDNEVHMPPPPLPGH 354
+ PP LP
Sbjct: 166 LDRQQSNTDTSWL--------TPPQLPPQ 186
Score = 30.0 bits (66), Expect = 3.7
Identities = 16/89 (17%), Positives = 21/89 (23%), Gaps = 8/89 (8%)
Query: 761 PPPPPPHVNSIGSEYGVPDFGGPGYPEINPRHPSGPAGAYSEQKPEVVPAPAASVSNSPN 820
PP + PD G GY + P Y+ P V P+
Sbjct: 106 RPPTSDRSSIALQIGKDPDDFGDGYTRFHEDLSPRPPLEYTTDIPAVFTDPSVMERYYYT 165
Query: 821 PSSPAPQKSSPSSISDNEVHMPPPPLPGH 849
+ PP LP
Sbjct: 166 LDRQQSNTDTSWL--------TPPQLPPQ 186
>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific
opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter
SP} SCOP: a.100.1.5 c.2.1.6
Length = 359
Score = 29.6 bits (66), Expect = 5.9
Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 6/69 (8%)
Query: 394 ARRRRDTILHVYKREAQEMTDVNTSRTIQVVAPGDVNFALNAGATSNETVVVSQKSIDSE 453
A + + + + +AQ + ++ I PG A TS+ + V D++
Sbjct: 24 ALKGQSVLA--WDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVK----DAD 77
Query: 454 HICISLPSF 462
I I +P+
Sbjct: 78 VILIVVPAI 86
Score = 29.6 bits (66), Expect = 5.9
Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 6/69 (8%)
Query: 889 ARRRRDTILHVYKREAQEMTDVNTSRTIQVVAPGDVNFALNAGATSNETVVVSQKSIDSE 948
A + + + + +AQ + ++ I PG A TS+ + V D++
Sbjct: 24 ALKGQSVLA--WDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVK----DAD 77
Query: 949 HICISLPSF 957
I I +P+
Sbjct: 78 VILIVVPAI 86
>2db6_A SH3 and cysteine rich domain 3; STAC3, C1 domain, cystein-rich
domain, zinc-binding domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 74
Score = 26.8 bits (59), Expect = 9.2
Identities = 7/23 (30%), Positives = 8/23 (34%)
Query: 225 SMNVHFQCVIQVCRYNCPEPRCG 247
N+H C V C P G
Sbjct: 52 KTNIHEHCQSYVEMQRCSGPSSG 74
Score = 26.8 bits (59), Expect = 9.2
Identities = 7/23 (30%), Positives = 8/23 (34%)
Query: 720 SMNVHFQCVIQVCRYNCPEPRCG 742
N+H C V C P G
Sbjct: 52 KTNIHEHCQSYVEMQRCSGPSSG 74
>1eys_C Photosynthetic reaction center; membrane protein complex, electron
transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A
{Thermochromatium tepidum} SCOP: a.138.1.2
Length = 382
Score = 28.7 bits (63), Expect = 9.6
Identities = 22/110 (20%), Positives = 34/110 (30%), Gaps = 12/110 (10%)
Query: 249 DYGAPQLGGGFGSGEYGPPPPPPHVNSIGSEYGV--PDFGGP---GYPEINPRHPSGPAG 303
+Y P L + GP P V+ + V P +G YP + + A
Sbjct: 260 NYIWP-LNDVLPASRKGPYGDPLRVSCMTCHQAVNKPLYGAQMAKDYPGLYKTAVTQEAL 318
Query: 304 AYSEQKPEVVPAPAASVSNSPNPSSPAPQKSSPSSISDNEVHMPPPPLPG 353
S E PA A + AP + P++ + P
Sbjct: 319 PGSAPASEAAPAAATE------AAPEAPAQEVPAAEAVPAAAEPGAAEAA 362
Score = 28.7 bits (63), Expect = 9.6
Identities = 22/110 (20%), Positives = 34/110 (30%), Gaps = 12/110 (10%)
Query: 744 DYGAPQLGGGFGSGEYGPPPPPPHVNSIGSEYGV--PDFGGP---GYPEINPRHPSGPAG 798
+Y P L + GP P V+ + V P +G YP + + A
Sbjct: 260 NYIWP-LNDVLPASRKGPYGDPLRVSCMTCHQAVNKPLYGAQMAKDYPGLYKTAVTQEAL 318
Query: 799 AYSEQKPEVVPAPAASVSNSPNPSSPAPQKSSPSSISDNEVHMPPPPLPG 848
S E PA A + AP + P++ + P
Sbjct: 319 PGSAPASEAAPAAATE------AAPEAPAQEVPAAEAVPAAAEPGAAEAA 362
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.421
Gapped
Lambda K H
0.267 0.0586 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 15,995,749
Number of extensions: 1012846
Number of successful extensions: 2931
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2596
Number of HSP's successfully gapped: 166
Length of query: 1009
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 906
Effective length of database: 3,825,930
Effective search space: 3466292580
Effective search space used: 3466292580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.0 bits)