RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5478
(1009 letters)
>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase
{Acinetobacter calcoaceticus [TaxId: 471]}
Length = 450
Score = 35.8 bits (81), Expect = 0.030
Identities = 45/332 (13%), Positives = 73/332 (21%), Gaps = 32/332 (9%)
Query: 85 DQARKLRCTWYDFYEKAVTFRPFQVDMLHAVTANFLGDNLQCWMQIQVGKGPWASEVSGI 144
+ + K+ ++ T N D L+ + + G SG
Sbjct: 89 KNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGR 148
Query: 145 VKIGQTMTMVLAIKDDENKFDMLVRNCVAHDGKRAPIQLVDQH-----GCVVRPKIMSKF 199
+ IG + I D + +L + G V+R +
Sbjct: 149 LVIGPDQKIYYTIGDQGRNQLAYLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSI 208
Query: 200 QKIKNFGPSA----------SVVSFAYFQAFKFPDSMNVHFQCV---IQVCRYNCPEPRC 246
K + A+ K S + V N P
Sbjct: 209 PKDNPSFNGVVSHIYTLGHRNPQGLAFTPNGKLLQSEQGPNSDDEINLIVKGGNYGWPNV 268
Query: 247 GGDYGAPQLGGGFGSGEYGPPPPPPHVNSIGSEYGVPDFGGP---GYPEINPRHPSGPAG 303
G S N + GVP G + P
Sbjct: 269 AGYKDDSGYAYANYSAAANKSIKDLAQNGVKVAAGVPVTKESEWTGKNFVPPLKTLYTVQ 328
Query: 304 AYSEQKPEVVPAPAASVSNSPNPSSPAPQKSSPSSISDNEVHMPPPPLPGHGATYQTVKR 363
+ PSS K +I+ E + L + R
Sbjct: 329 DTYNYNDPTCGEMTYICWPTVAPSSAYVYKGGKKAITGWENTL----LVP-SLKRGVIFR 383
Query: 364 ------KGTVSEEGGDLVTLGGRPRSVEIFPD 389
T ++ + R R V PD
Sbjct: 384 IKLDPTYSTTYDDAVPMFKSNNRYRDVIASPD 415
Score = 35.8 bits (81), Expect = 0.030
Identities = 45/332 (13%), Positives = 73/332 (21%), Gaps = 32/332 (9%)
Query: 580 DQARKLRCTWYDFYEKAVTFRPFQVDMLHAVTANFLGDNLQCWMQIQVGKGPWASEVSGI 639
+ + K+ ++ T N D L+ + + G SG
Sbjct: 89 KNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGR 148
Query: 640 VKIGQTMTMVLAIKDDENKFDMLVRNCVAHDGKRAPIQLVDQH-----GCVVRPKIMSKF 694
+ IG + I D + +L + G V+R +
Sbjct: 149 LVIGPDQKIYYTIGDQGRNQLAYLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSI 208
Query: 695 QKIKNFGPSA----------SVVSFAYFQAFKFPDSMNVHFQCV---IQVCRYNCPEPRC 741
K + A+ K S + V N P
Sbjct: 209 PKDNPSFNGVVSHIYTLGHRNPQGLAFTPNGKLLQSEQGPNSDDEINLIVKGGNYGWPNV 268
Query: 742 GGDYGAPQLGGGFGSGEYGPPPPPPHVNSIGSEYGVPDFGGP---GYPEINPRHPSGPAG 798
G S N + GVP G + P
Sbjct: 269 AGYKDDSGYAYANYSAAANKSIKDLAQNGVKVAAGVPVTKESEWTGKNFVPPLKTLYTVQ 328
Query: 799 AYSEQKPEVVPAPAASVSNSPNPSSPAPQKSSPSSISDNEVHMPPPPLPGHGATYQTVKR 858
+ PSS K +I+ E + L + R
Sbjct: 329 DTYNYNDPTCGEMTYICWPTVAPSSAYVYKGGKKAITGWENTL----LVP-SLKRGVIFR 383
Query: 859 ------KGTVSEEGGDLVTLGGRPRSVEIFPD 884
T ++ + R R V PD
Sbjct: 384 IKLDPTYSTTYDDAVPMFKSNNRYRDVIASPD 415
>d2icya2 c.68.1.5 (A:6-383) UDP-glucose pyrophosphorylase 2 (UDPGP
2) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 378
Score = 31.1 bits (70), Expect = 0.79
Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 7/64 (10%)
Query: 340 SDNEVHMPPPPLPGHGATYQ-----TVKRKGTVSEEGGDLVTLGGRPRSVEI--FPDELR 392
SDN + + H + V K +GG L++ G+ + +EI PDE
Sbjct: 216 SDNLGAIVDLTILKHLIQNKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHV 275
Query: 393 GARR 396
+
Sbjct: 276 NEFK 279
Score = 31.1 bits (70), Expect = 0.79
Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 7/64 (10%)
Query: 835 SDNEVHMPPPPLPGHGATYQ-----TVKRKGTVSEEGGDLVTLGGRPRSVEI--FPDELR 887
SDN + + H + V K +GG L++ G+ + +EI PDE
Sbjct: 216 SDNLGAIVDLTILKHLIQNKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHV 275
Query: 888 GARR 891
+
Sbjct: 276 NEFK 279
>d2v8qa1 d.129.6.2 (A:396-548) 5'-AMP-activated protein kinase
catalytic subunit alpha-1, AMPK1 {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 153
Score = 28.4 bits (63), Expect = 2.8
Identities = 10/71 (14%), Positives = 19/71 (26%), Gaps = 2/71 (2%)
Query: 284 DFGGPGYPEINPRHPSGPAGAYSEQKPEVVPAPAASVSNSPNPSSPAPQKSSPSSISDNE 343
DF + + + S S++ P+ + S S +
Sbjct: 67 DFRSIDDEITEAKSGTATPQ--RSGSISNYRSCQRSDSDAEAQGKPSEVSLTSSVTSLDS 124
Query: 344 VHMPPPPLPGH 354
+ P PG
Sbjct: 125 SPVDVAPRPGS 135
Score = 28.4 bits (63), Expect = 2.8
Identities = 10/71 (14%), Positives = 19/71 (26%), Gaps = 2/71 (2%)
Query: 779 DFGGPGYPEINPRHPSGPAGAYSEQKPEVVPAPAASVSNSPNPSSPAPQKSSPSSISDNE 838
DF + + + S S++ P+ + S S +
Sbjct: 67 DFRSIDDEITEAKSGTATPQ--RSGSISNYRSCQRSDSDAEAQGKPSEVSLTSSVTSLDS 124
Query: 839 VHMPPPPLPGH 849
+ P PG
Sbjct: 125 SPVDVAPRPGS 135
>d1tz7a1 c.1.8.1 (A:1-485) Amylomaltase MalQ {Aquifex aeolicus
[TaxId: 63363]}
Length = 485
Score = 28.1 bits (62), Expect = 6.9
Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 13/48 (27%)
Query: 272 HVNSIGSEYGVPDFG-------------GPGYPEINPRHPSGPAGAYS 306
HV S+ S YG+ D G G ++ P +P+ S
Sbjct: 9 HVTSLPSPYGIGDLGKEAYRFLDFLKECGFSLWQVLPLNPTSLEAGNS 56
Score = 28.1 bits (62), Expect = 6.9
Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 13/48 (27%)
Query: 767 HVNSIGSEYGVPDFG-------------GPGYPEINPRHPSGPAGAYS 801
HV S+ S YG+ D G G ++ P +P+ S
Sbjct: 9 HVTSLPSPYGIGDLGKEAYRFLDFLKECGFSLWQVLPLNPTSLEAGNS 56
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.421
Gapped
Lambda K H
0.267 0.0562 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,910,432
Number of extensions: 191414
Number of successful extensions: 509
Number of sequences better than 10.0: 1
Number of HSP's gapped: 509
Number of HSP's successfully gapped: 14
Length of query: 1009
Length of database: 2,407,596
Length adjustment: 94
Effective length of query: 915
Effective length of database: 1,116,976
Effective search space: 1022033040
Effective search space used: 1022033040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.5 bits)