BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy548
(84 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|350536293|ref|NP_001233048.1| uncharacterized protein LOC100165288 [Acyrthosiphon pisum]
gi|239788305|dbj|BAH70841.1| ACYPI005782 [Acyrthosiphon pisum]
gi|239790530|dbj|BAH71820.1| ACYPI006245 [Acyrthosiphon pisum]
Length = 132
Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 67/77 (87%), Positives = 71/77 (92%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELK RKIPIIIRRYLP
Sbjct: 56 ITTKYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKKRKIPIIIRRYLP 115
Query: 68 DNSYEDWGIDELKIIDR 84
DNSYEDWGIDEL I+D+
Sbjct: 116 DNSYEDWGIDELIIVDQ 132
>gi|307168238|gb|EFN61464.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2
[Camponotus floridanus]
Length = 129
Score = 138 bits (348), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 68/77 (88%), Positives = 70/77 (90%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELK RKIPIIIRRYLP
Sbjct: 53 ITTRYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKQRKIPIIIRRYLP 112
Query: 68 DNSYEDWGIDELKIIDR 84
DNSYEDWGIDEL IID
Sbjct: 113 DNSYEDWGIDELIIIDH 129
>gi|332027163|gb|EGI67256.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2
[Acromyrmex echinatior]
Length = 130
Score = 138 bits (347), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 68/77 (88%), Positives = 70/77 (90%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELK RKIPIIIRRYLP
Sbjct: 54 ITTRYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKQRKIPIIIRRYLP 113
Query: 68 DNSYEDWGIDELKIIDR 84
DNSYEDWGIDEL IID
Sbjct: 114 DNSYEDWGIDELIIIDH 130
>gi|346470037|gb|AEO34863.1| hypothetical protein [Amblyomma maculatum]
Length = 129
Score = 138 bits (347), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 67/76 (88%), Positives = 70/76 (92%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T+ + +YERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP
Sbjct: 54 ITTMYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 113
Query: 68 DNSYEDWGIDELKIID 83
D SYEDWGIDEL I D
Sbjct: 114 DGSYEDWGIDELLITD 129
>gi|66524012|ref|XP_393973.2| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like [Apis mellifera]
gi|340724588|ref|XP_003400663.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like [Bombus terrestris]
gi|350397886|ref|XP_003485021.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like [Bombus impatiens]
gi|380021021|ref|XP_003694373.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like [Apis florea]
Length = 130
Score = 138 bits (347), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 68/77 (88%), Positives = 70/77 (90%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELK RKIPIIIRRYLP
Sbjct: 54 ITTRYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKQRKIPIIIRRYLP 113
Query: 68 DNSYEDWGIDELKIIDR 84
DNSYEDWGIDEL IID
Sbjct: 114 DNSYEDWGIDELIIIDH 130
>gi|307201767|gb|EFN81440.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2
[Harpegnathos saltator]
gi|307202651|gb|EFN81971.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2
[Harpegnathos saltator]
Length = 130
Score = 137 bits (346), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 67/77 (87%), Positives = 70/77 (90%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELK RKIPI+IRRYLP
Sbjct: 54 ITTRYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKQRKIPIVIRRYLP 113
Query: 68 DNSYEDWGIDELKIIDR 84
DNSYEDWGIDEL IID
Sbjct: 114 DNSYEDWGIDELIIIDH 130
>gi|241558215|ref|XP_002400181.1| RNA polymerase subunit K, putative [Ixodes scapularis]
gi|215499742|gb|EEC09236.1| RNA polymerase subunit K, putative [Ixodes scapularis]
gi|442752305|gb|JAA68312.1| Putative rna polymerase subunit k [Ixodes ricinus]
Length = 129
Score = 137 bits (346), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 67/76 (88%), Positives = 70/76 (92%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T+ + +YERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP
Sbjct: 54 ITTMYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 113
Query: 68 DNSYEDWGIDELKIID 83
D SYEDWGIDEL I D
Sbjct: 114 DGSYEDWGIDELIITD 129
>gi|383854730|ref|XP_003702873.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like [Megachile rotundata]
Length = 130
Score = 137 bits (346), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 67/77 (87%), Positives = 70/77 (90%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELK RKIPI+IRRYLP
Sbjct: 54 ITTRYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKQRKIPIVIRRYLP 113
Query: 68 DNSYEDWGIDELKIIDR 84
DNSYEDWGIDEL IID
Sbjct: 114 DNSYEDWGIDELIIIDH 130
>gi|307197591|gb|EFN78795.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2
[Harpegnathos saltator]
Length = 109
Score = 137 bits (345), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 67/77 (87%), Positives = 70/77 (90%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELK RKIPI+IRRYLP
Sbjct: 33 ITTRYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKQRKIPIVIRRYLP 92
Query: 68 DNSYEDWGIDELKIIDR 84
DNSYEDWGIDEL IID
Sbjct: 93 DNSYEDWGIDELIIIDH 109
>gi|322784320|gb|EFZ11308.1| hypothetical protein SINV_10192 [Solenopsis invicta]
Length = 149
Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 66/69 (95%), Positives = 66/69 (95%)
Query: 16 YERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDWG 75
YERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELK RKIPIIIRRYLPDNSYEDWG
Sbjct: 81 YERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKQRKIPIIIRRYLPDNSYEDWG 140
Query: 76 IDELKIIDR 84
IDEL IID
Sbjct: 141 IDELIIIDH 149
>gi|91084023|ref|XP_975355.1| PREDICTED: similar to AGAP005873-PA [Tribolium castaneum]
gi|270006702|gb|EFA03150.1| hypothetical protein TcasGA2_TC013063 [Tribolium castaneum]
Length = 131
Score = 135 bits (339), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 66/77 (85%), Positives = 70/77 (90%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERARVLGTRALQIAMCAPVMVEL+GETDPLQIAMKELK RKIPIIIRRYLP
Sbjct: 55 ITTKYMTKYERARVLGTRALQIAMCAPVMVELDGETDPLQIAMKELKQRKIPIIIRRYLP 114
Query: 68 DNSYEDWGIDELKIIDR 84
D+SYEDWGIDEL IID
Sbjct: 115 DHSYEDWGIDELIIIDH 131
>gi|332373212|gb|AEE61747.1| unknown [Dendroctonus ponderosae]
Length = 131
Score = 134 bits (338), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 66/77 (85%), Positives = 70/77 (90%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERARVLGTRALQIAMCAPVMVEL+GETDPLQIAMKELK RKIPIIIRRYLP
Sbjct: 55 ITTKYMTKYERARVLGTRALQIAMCAPVMVELDGETDPLQIAMKELKQRKIPIIIRRYLP 114
Query: 68 DNSYEDWGIDELKIIDR 84
D+SYEDWGIDEL IID
Sbjct: 115 DHSYEDWGIDELIIIDH 131
>gi|156547958|ref|XP_001604960.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like [Nasonia vitripennis]
Length = 130
Score = 134 bits (338), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 64/77 (83%), Positives = 70/77 (90%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERAR+LGTRALQI+MCAPVMVELEGETDPLQIAMKELK RKIPIIIRR+LP
Sbjct: 54 ITTGYMTKYERARILGTRALQISMCAPVMVELEGETDPLQIAMKELKQRKIPIIIRRFLP 113
Query: 68 DNSYEDWGIDELKIIDR 84
D+SYEDWGIDEL IID
Sbjct: 114 DHSYEDWGIDELIIIDH 130
>gi|290561697|gb|ADD38248.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2
[Lepeophtheirus salmonis]
Length = 135
Score = 134 bits (336), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 66/74 (89%), Positives = 68/74 (91%)
Query: 10 TIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDN 69
T + +YERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELK RKIPIIIRRYLPD
Sbjct: 61 TPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKQRKIPIIIRRYLPDG 120
Query: 70 SYEDWGIDELKIID 83
SYEDWGIDEL IID
Sbjct: 121 SYEDWGIDELIIID 134
>gi|432871046|ref|XP_004071844.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like [Oryzias latipes]
Length = 127
Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 65/76 (85%), Positives = 68/76 (89%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELK+RKIPIIIRRYLP
Sbjct: 52 ITTPHMTKYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKSRKIPIIIRRYLP 111
Query: 68 DNSYEDWGIDELKIID 83
D SYEDWG DEL I D
Sbjct: 112 DGSYEDWGCDELIITD 127
>gi|50540154|ref|NP_001002544.1| polymerase (RNA) II (DNA directed) polypeptide F [Danio rerio]
gi|49900746|gb|AAH76264.1| Zgc:92790 [Danio rerio]
Length = 127
Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 65/76 (85%), Positives = 68/76 (89%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELK+RKIPIIIRRYLP
Sbjct: 52 ITTQYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKSRKIPIIIRRYLP 111
Query: 68 DNSYEDWGIDELKIID 83
D SYEDWG DEL I D
Sbjct: 112 DGSYEDWGCDELIITD 127
>gi|357620847|gb|EHJ72887.1| DNA-directed RNA polymerase subunit 6-like protein [Danaus
plexippus]
Length = 132
Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 66/77 (85%), Positives = 69/77 (89%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELK RKIPIIIRRYLP
Sbjct: 56 ITTRYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKQRKIPIIIRRYLP 115
Query: 68 DNSYEDWGIDELKIIDR 84
D+SYEDW IDEL IID
Sbjct: 116 DHSYEDWSIDELIIIDH 132
>gi|221220940|gb|ACM09131.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2 [Salmo
salar]
Length = 127
Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 65/76 (85%), Positives = 67/76 (88%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELK RKIPIIIRRYLP
Sbjct: 52 ITTQYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKCRKIPIIIRRYLP 111
Query: 68 DNSYEDWGIDELKIID 83
D SYEDWG DEL I D
Sbjct: 112 DGSYEDWGCDELIITD 127
>gi|348511249|ref|XP_003443157.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like [Oreochromis niloticus]
Length = 127
Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 65/76 (85%), Positives = 68/76 (89%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELK+RKIPIIIRRYLP
Sbjct: 52 ITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKSRKIPIIIRRYLP 111
Query: 68 DNSYEDWGIDELKIID 83
D SYEDWG DEL I D
Sbjct: 112 DGSYEDWGCDELIITD 127
>gi|47217008|emb|CAG01636.1| unnamed protein product [Tetraodon nigroviridis]
Length = 127
Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 65/76 (85%), Positives = 68/76 (89%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELK+RKIPIIIRRYLP
Sbjct: 52 ITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKSRKIPIIIRRYLP 111
Query: 68 DNSYEDWGIDELKIID 83
D SYEDWG DEL I D
Sbjct: 112 DGSYEDWGCDELIITD 127
>gi|242007913|ref|XP_002424760.1| DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide,
putative [Pediculus humanus corporis]
gi|212508274|gb|EEB12022.1| DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide,
putative [Pediculus humanus corporis]
Length = 132
Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 66/77 (85%), Positives = 69/77 (89%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERARVLGTRALQIAM APVMVELEGETDPLQIAMKELK RKIPIIIRRYLP
Sbjct: 56 ITTKYMTKYERARVLGTRALQIAMGAPVMVELEGETDPLQIAMKELKQRKIPIIIRRYLP 115
Query: 68 DNSYEDWGIDELKIIDR 84
D+SYEDWGIDEL IID
Sbjct: 116 DHSYEDWGIDELIIIDH 132
>gi|221219376|gb|ACM08349.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2 [Salmo
salar]
Length = 127
Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 65/76 (85%), Positives = 67/76 (88%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELK RKIPIIIRRYLP
Sbjct: 52 ITTQYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKCRKIPIIIRRYLP 111
Query: 68 DNSYEDWGIDELKIID 83
D SYEDWG DEL I D
Sbjct: 112 DGSYEDWGCDELIITD 127
>gi|55742300|ref|NP_001006888.1| polymerase (RNA) II (DNA directed) polypeptide F [Xenopus
(Silurana) tropicalis]
gi|50416676|gb|AAH77687.1| polymerase (RNA) II (DNA directed) polypeptide F [Xenopus
(Silurana) tropicalis]
gi|89267399|emb|CAJ83270.1| polymerase (RNA) II (DNA directed) polypeptide F [Xenopus
(Silurana) tropicalis]
Length = 127
Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 65/76 (85%), Positives = 68/76 (89%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERARVLGTRALQIAMCAPVMVELEGETDPL IAMKELKARKIPIIIRRYLP
Sbjct: 52 ITTNYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLP 111
Query: 68 DNSYEDWGIDELKIID 83
D SYEDWG+DEL I D
Sbjct: 112 DGSYEDWGVDELIITD 127
>gi|432111961|gb|ELK34996.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2 [Myotis
davidii]
Length = 165
Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 65/76 (85%), Positives = 68/76 (89%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERARVLGTRALQIAMCAPVMVELEGETDPL IAMKELKARKIPIIIRRYLP
Sbjct: 90 ITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLP 149
Query: 68 DNSYEDWGIDELKIID 83
D SYEDWG+DEL I D
Sbjct: 150 DGSYEDWGVDELIITD 165
>gi|229366558|gb|ACQ58259.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2
[Anoplopoma fimbria]
Length = 127
Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 65/76 (85%), Positives = 68/76 (89%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELK+RKIPIIIRRYLP
Sbjct: 52 ITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKSRKIPIIIRRYLP 111
Query: 68 DNSYEDWGIDELKIID 83
D SYEDWG DEL I D
Sbjct: 112 DGSYEDWGCDELIITD 127
>gi|410901637|ref|XP_003964302.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like [Takifugu rubripes]
Length = 127
Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 65/76 (85%), Positives = 68/76 (89%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELK+RKIPIIIRRYLP
Sbjct: 52 ITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKSRKIPIIIRRYLP 111
Query: 68 DNSYEDWGIDELKIID 83
D SYEDWG DEL I D
Sbjct: 112 DGSYEDWGCDELIISD 127
>gi|147900131|ref|NP_001088632.1| DNA directed RNA polymerase II polypeptide F [Xenopus laevis]
gi|55250665|gb|AAH86273.1| LOC495684 protein [Xenopus laevis]
gi|226372762|gb|ACO52006.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2 [Rana
catesbeiana]
Length = 127
Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 65/76 (85%), Positives = 68/76 (89%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERARVLGTRALQIAMCAPVMVELEGETDPL IAMKELKARKIPIIIRRYLP
Sbjct: 52 ITTNYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLP 111
Query: 68 DNSYEDWGIDELKIID 83
D SYEDWG+DEL I D
Sbjct: 112 DGSYEDWGVDELIITD 127
>gi|225707814|gb|ACO09753.1| DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide
[Osmerus mordax]
Length = 127
Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 65/76 (85%), Positives = 67/76 (88%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELK RKIPIIIRRYLP
Sbjct: 52 ITTQYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKGRKIPIIIRRYLP 111
Query: 68 DNSYEDWGIDELKIID 83
D SYEDWG DEL I D
Sbjct: 112 DASYEDWGCDELIITD 127
>gi|225715824|gb|ACO13758.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2 [Esox
lucius]
Length = 127
Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 65/76 (85%), Positives = 67/76 (88%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELK RKIPIIIRRYLP
Sbjct: 52 ITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKCRKIPIIIRRYLP 111
Query: 68 DNSYEDWGIDELKIID 83
D SYEDWG DEL I D
Sbjct: 112 DGSYEDWGCDELIITD 127
>gi|58387910|ref|XP_315900.2| AGAP005873-PA [Anopheles gambiae str. PEST]
gi|55238688|gb|EAA11626.2| AGAP005873-PA [Anopheles gambiae str. PEST]
Length = 131
Score = 132 bits (332), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 65/77 (84%), Positives = 69/77 (89%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERARVLGTRALQIAMCAP+MVELEGETDPLQIAMKELK RKIPIIIRRYLP
Sbjct: 55 ITTKYMTKYERARVLGTRALQIAMCAPIMVELEGETDPLQIAMKELKQRKIPIIIRRYLP 114
Query: 68 DNSYEDWGIDELKIIDR 84
D+SYEDW IDEL IID
Sbjct: 115 DSSYEDWSIDELIIIDH 131
>gi|281351145|gb|EFB26729.1| hypothetical protein PANDA_002504 [Ailuropoda melanoleuca]
Length = 132
Score = 132 bits (332), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 65/76 (85%), Positives = 68/76 (89%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERARVLGTRALQIAMCAPVMVELEGETDPL IAMKELKARKIPIIIRRYLP
Sbjct: 57 ITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLP 116
Query: 68 DNSYEDWGIDELKIID 83
D SYEDWG+DEL I D
Sbjct: 117 DGSYEDWGVDELIITD 132
>gi|321455077|gb|EFX66221.1| hypothetical protein DAPPUDRAFT_64901 [Daphnia pulex]
Length = 103
Score = 132 bits (332), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 65/76 (85%), Positives = 68/76 (89%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELK +KIPIIIRRYLP
Sbjct: 28 ITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKQKKIPIIIRRYLP 87
Query: 68 DNSYEDWGIDELKIID 83
D SYEDWGIDEL I D
Sbjct: 88 DGSYEDWGIDELVIND 103
>gi|197128486|gb|ACH44984.1| putative DNA directed RNA polymerase II polypeptide F variant 2
[Taeniopygia guttata]
Length = 127
Score = 132 bits (332), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 65/76 (85%), Positives = 68/76 (89%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERARVLGTRALQIAMCAPVMVELEGETDPL IAMKELKARKIPIIIRRYLP
Sbjct: 52 ITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLP 111
Query: 68 DNSYEDWGIDELKIID 83
D SYEDWG+DEL I D
Sbjct: 112 DGSYEDWGVDELIITD 127
>gi|149463071|ref|XP_001514439.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like [Ornithorhynchus anatinus]
gi|327284940|ref|XP_003227193.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like [Anolis carolinensis]
Length = 127
Score = 132 bits (332), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 65/76 (85%), Positives = 68/76 (89%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERARVLGTRALQIAMCAPVMVELEGETDPL IAMKELKARKIPIIIRRYLP
Sbjct: 52 ITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLP 111
Query: 68 DNSYEDWGIDELKIID 83
D SYEDWG+DEL I D
Sbjct: 112 DGSYEDWGVDELIITD 127
>gi|417408211|gb|JAA50672.1| Putative dna-directed rna polymerases i ii and iii subunit rpabc2,
partial [Desmodus rotundus]
Length = 157
Score = 132 bits (332), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 65/76 (85%), Positives = 68/76 (89%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERARVLGTRALQIAMCAPVMVELEGETDPL IAMKELKARKIPIIIRRYLP
Sbjct: 82 ITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLP 141
Query: 68 DNSYEDWGIDELKIID 83
D SYEDWG+DEL I D
Sbjct: 142 DGSYEDWGVDELIITD 157
>gi|57092769|ref|XP_531740.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2 isoform 1 [Canis lupus familiaris]
gi|301757504|ref|XP_002914588.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like [Ailuropoda melanoleuca]
gi|410965535|ref|XP_003989303.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2 [Felis catus]
Length = 127
Score = 132 bits (332), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 65/76 (85%), Positives = 68/76 (89%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERARVLGTRALQIAMCAPVMVELEGETDPL IAMKELKARKIPIIIRRYLP
Sbjct: 52 ITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLP 111
Query: 68 DNSYEDWGIDELKIID 83
D SYEDWG+DEL I D
Sbjct: 112 DGSYEDWGVDELIITD 127
>gi|11527390|ref|NP_068809.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2 [Homo
sapiens]
gi|197099562|ref|NP_001127626.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2 [Pongo
abelii]
gi|269315856|ref|NP_001032552.2| DNA-directed RNA polymerases I, II, and III subunit RPABC2 [Bos
taurus]
gi|388452428|ref|NP_001252903.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2 [Macaca
mulatta]
gi|55661193|ref|XP_515126.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2 isoform 2 [Pan troglodytes]
gi|291414667|ref|XP_002723577.1| PREDICTED: DNA directed RNA polymerase II polypeptide F-like
[Oryctolagus cuniculus]
gi|296191869|ref|XP_002743812.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2 [Callithrix jacchus]
gi|332231190|ref|XP_003264781.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2 isoform 1 [Nomascus leucogenys]
gi|344296242|ref|XP_003419818.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like [Loxodonta africana]
gi|348569492|ref|XP_003470532.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like [Cavia porcellus]
gi|354496424|ref|XP_003510326.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like [Cricetulus griseus]
gi|395819802|ref|XP_003783268.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2 [Otolemur garnettii]
gi|397501922|ref|XP_003821623.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2 [Pan paniscus]
gi|403283017|ref|XP_003932925.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2 [Saimiri boliviensis boliviensis]
gi|426225768|ref|XP_004007035.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2 [Ovis aries]
gi|47117760|sp|P61217.1|RPAB2_CRIGR RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC2; Short=RNA polymerases I, II, and III subunit
ABC2; AltName: Full=DNA-directed RNA polymerase II
subunit F; AltName: Full=RPB6 homolog
gi|47117761|sp|P61218.1|RPAB2_HUMAN RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC2; Short=RNA polymerases I, II, and III subunit
ABC2; AltName: Full=DNA-directed RNA polymerase II
subunit F; AltName: Full=DNA-directed RNA polymerases I,
II, and III 14.4 kDa polypeptide; AltName:
Full=RPABC14.4; Short=RPB14.4; AltName: Full=RPB6
homolog; AltName: Full=RPC15
gi|75054738|sp|Q5R592.1|RPAB2_PONAB RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC2; Short=RNA polymerases I, II, and III subunit
ABC2; AltName: Full=DNA-directed RNA polymerase II
subunit F; AltName: Full=RPB6 homolog
gi|157879780|pdb|1QKL|A Chain A, Hrpabc14.4, Essential Subunit Of Human Rna Polymerases I,
Ii And Iii
gi|415388|emb|CAA81629.1| RNA Polymerase II subunit 14.4 kD [Homo sapiens]
gi|546863|gb|AAB30834.1| RNA polymerase common subunit RPB6 [Cricetinae]
gi|13097771|gb|AAH03582.1| Polymerase (RNA) II (DNA directed) polypeptide F [Homo sapiens]
gi|47678623|emb|CAG30432.1| POLR2F [Homo sapiens]
gi|48146159|emb|CAG33302.1| POLR2F [Homo sapiens]
gi|55732753|emb|CAH93074.1| hypothetical protein [Pongo abelii]
gi|109451432|emb|CAK54577.1| POLR2F [synthetic construct]
gi|109452028|emb|CAK54876.1| POLR2F [synthetic construct]
gi|119580607|gb|EAW60203.1| polymerase (RNA) II (DNA directed) polypeptide F, isoform CRA_b
[Homo sapiens]
gi|208965372|dbj|BAG72700.1| polymerase (RNA) II (DNA directed) polypeptide F [synthetic
construct]
gi|296487009|tpg|DAA29122.1| TPA: DNA-directed RNA polymerases I, II, and III subunit RPABC2
[Bos taurus]
gi|351699272|gb|EHB02191.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2
[Heterocephalus glaber]
gi|355563660|gb|EHH20222.1| hypothetical protein EGK_03030 [Macaca mulatta]
gi|355784978|gb|EHH65829.1| hypothetical protein EGM_02676 [Macaca fascicularis]
gi|380813882|gb|AFE78815.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2 [Macaca
mulatta]
gi|383419313|gb|AFH32870.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2 [Macaca
mulatta]
gi|384947772|gb|AFI37491.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2 [Macaca
mulatta]
gi|410305086|gb|JAA31143.1| polymerase (RNA) II (DNA directed) polypeptide F [Pan troglodytes]
gi|431905192|gb|ELK10239.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2
[Pteropus alecto]
gi|444517667|gb|ELV11712.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2 [Tupaia
chinensis]
Length = 127
Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 65/76 (85%), Positives = 68/76 (89%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERARVLGTRALQIAMCAPVMVELEGETDPL IAMKELKARKIPIIIRRYLP
Sbjct: 52 ITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLP 111
Query: 68 DNSYEDWGIDELKIID 83
D SYEDWG+DEL I D
Sbjct: 112 DGSYEDWGVDELIITD 127
>gi|189053151|dbj|BAG34773.1| unnamed protein product [Homo sapiens]
Length = 127
Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 65/76 (85%), Positives = 68/76 (89%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERARVLGTRALQIAMCAPVMVELEGETDPL IAMKELKARKIPIIIRRYLP
Sbjct: 52 ITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLP 111
Query: 68 DNSYEDWGIDELKIID 83
D SYEDWG+DEL I D
Sbjct: 112 DGSYEDWGVDELIITD 127
>gi|45382031|ref|NP_990065.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2 [Gallus
gallus]
gi|326911899|ref|XP_003202293.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like [Meleagris gallopavo]
gi|6522686|emb|CAB62065.1| RNA polymerase common subunit RPB6 [Gallus gallus]
Length = 127
Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 65/76 (85%), Positives = 68/76 (89%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERARVLGTRALQIAMCAPVMVELEGETDPL IAMKELKARKIPIIIRRYLP
Sbjct: 52 ITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLP 111
Query: 68 DNSYEDWGIDELKIID 83
D SYEDWG+DEL I D
Sbjct: 112 DGSYEDWGVDELIITD 127
>gi|402884196|ref|XP_003905574.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2 [Papio anubis]
Length = 127
Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 65/76 (85%), Positives = 68/76 (89%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERARVLGTRALQIAMCAPVMVELEGETDPL IAMKELKARKIPIIIRRYLP
Sbjct: 52 ITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLP 111
Query: 68 DNSYEDWGIDELKIID 83
D SYEDWG+DEL I D
Sbjct: 112 DGSYEDWGVDELIITD 127
>gi|122142944|sp|Q32PE0.1|RPAB2_BOVIN RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC2; Short=RNA polymerases I, II, and III subunit
ABC2; AltName: Full=DNA-directed RNA polymerase II
subunit F; AltName: Full=RPB6 homolog
gi|79160245|gb|AAI08154.1| Polymerase (RNA) II (DNA directed) polypeptide F [Bos taurus]
Length = 127
Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 65/76 (85%), Positives = 68/76 (89%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERARVLGTRALQIAMCAPVMVELEGETDPL IAMKELKARKIPIIIRRYLP
Sbjct: 52 ITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLP 111
Query: 68 DNSYEDWGIDELKIID 83
D SYEDWG+DEL I D
Sbjct: 112 DGSYEDWGVDELIITD 127
>gi|126343910|ref|XP_001365095.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like [Monodelphis domestica]
gi|395540892|ref|XP_003772384.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2 [Sarcophilus harrisii]
Length = 127
Score = 132 bits (331), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 65/76 (85%), Positives = 68/76 (89%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERARVLGTRALQIAMCAPVMVELEGETDPL IAMKELKARKIPIIIRRYLP
Sbjct: 52 ITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLP 111
Query: 68 DNSYEDWGIDELKIID 83
D SYEDWG+DEL I D
Sbjct: 112 DGSYEDWGVDELIITD 127
>gi|149743032|ref|XP_001501309.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like [Equus caballus]
Length = 127
Score = 132 bits (331), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 65/76 (85%), Positives = 68/76 (89%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERARVLGTRALQIAMCAPVMVELEGETDPL IAMKELKARKIPIIIRRYLP
Sbjct: 52 ITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLP 111
Query: 68 DNSYEDWGIDELKIID 83
D SYEDWG+DEL I D
Sbjct: 112 DGSYEDWGVDELIITD 127
>gi|440896219|gb|ELR48207.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2 [Bos
grunniens mutus]
Length = 105
Score = 132 bits (331), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 65/76 (85%), Positives = 68/76 (89%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERARVLGTRALQIAMCAPVMVELEGETDPL IAMKELKARKIPIIIRRYLP
Sbjct: 30 ITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLP 89
Query: 68 DNSYEDWGIDELKIID 83
D SYEDWG+DEL I D
Sbjct: 90 DGSYEDWGVDELIITD 105
>gi|344238230|gb|EGV94333.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2
[Cricetulus griseus]
Length = 121
Score = 132 bits (331), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 65/76 (85%), Positives = 68/76 (89%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERARVLGTRALQIAMCAPVMVELEGETDPL IAMKELKARKIPIIIRRYLP
Sbjct: 46 ITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLP 105
Query: 68 DNSYEDWGIDELKIID 83
D SYEDWG+DEL I D
Sbjct: 106 DGSYEDWGVDELIITD 121
>gi|426394448|ref|XP_004063508.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2, partial [Gorilla gorilla gorilla]
Length = 120
Score = 131 bits (330), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 65/76 (85%), Positives = 68/76 (89%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERARVLGTRALQIAMCAPVMVELEGETDPL IAMKELKARKIPIIIRRYLP
Sbjct: 45 ITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLP 104
Query: 68 DNSYEDWGIDELKIID 83
D SYEDWG+DEL I D
Sbjct: 105 DGSYEDWGVDELIITD 120
>gi|74225195|dbj|BAE38285.1| unnamed protein product [Mus musculus]
Length = 127
Score = 131 bits (330), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 66/80 (82%), Positives = 69/80 (86%)
Query: 4 SPSFIITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIR 63
S I T + +YERARVLGTRALQIAMCAPVMVELEGETDPL IAMKELKARKIPIIIR
Sbjct: 48 SQKRITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIR 107
Query: 64 RYLPDNSYEDWGIDELKIID 83
RYLPD SYEDWG+DEL I D
Sbjct: 108 RYLPDGSYEDWGVDELIISD 127
>gi|215259697|gb|ACJ64340.1| DNA-directed RNA polymerase I [Culex tarsalis]
Length = 131
Score = 131 bits (330), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 65/77 (84%), Positives = 68/77 (88%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERARVLGTRALQIAMCAP+MVELEGETDPLQIAMKELK RKIPIIIRRYLP
Sbjct: 55 ITTKYMTKYERARVLGTRALQIAMCAPIMVELEGETDPLQIAMKELKQRKIPIIIRRYLP 114
Query: 68 DNSYEDWGIDELKIIDR 84
D SYEDW IDEL IID
Sbjct: 115 DASYEDWSIDELIIIDH 131
>gi|170068328|ref|XP_001868823.1| DNA-directed RNA polymeraseI [Culex quinquefasciatus]
gi|167864391|gb|EDS27774.1| DNA-directed RNA polymeraseI [Culex quinquefasciatus]
Length = 131
Score = 131 bits (330), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 65/77 (84%), Positives = 68/77 (88%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERARVLGTRALQIAMCAP+MVELEGETDPLQIAMKELK RKIPIIIRRYLP
Sbjct: 55 ITTKYMTKYERARVLGTRALQIAMCAPIMVELEGETDPLQIAMKELKQRKIPIIIRRYLP 114
Query: 68 DNSYEDWGIDELKIIDR 84
D SYEDW IDEL IID
Sbjct: 115 DASYEDWSIDELIIIDH 131
>gi|13786166|ref|NP_112625.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2 [Rattus
norvegicus]
gi|58037181|ref|NP_081507.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2 [Mus
musculus]
gi|311255104|ref|XP_003126077.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like isoform 1 [Sus scrofa]
gi|311255106|ref|XP_003126078.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like isoform 2 [Sus scrofa]
gi|335287648|ref|XP_003355408.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like [Sus scrofa]
gi|350583791|ref|XP_003481589.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like isoform 1 [Sus scrofa]
gi|350583793|ref|XP_003481590.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like isoform 2 [Sus scrofa]
gi|350583795|ref|XP_003481591.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like isoform 3 [Sus scrofa]
gi|8134658|sp|O88828.1|RPAB2_RAT RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC2; Short=RNA polymerases I, II, and III subunit
ABC2; AltName: Full=DNA-directed RNA polymerase II
subunit F; AltName: Full=RPB6 homolog
gi|47117076|sp|P61219.1|RPAB2_MOUSE RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC2; Short=RNA polymerases I, II, and III subunit
ABC2; AltName: Full=DNA-directed RNA polymerase II
subunit F; AltName: Full=RPB6 homolog
gi|3650216|dbj|BAA33414.1| RNA polymerase II [Rattus norvegicus]
gi|12841772|dbj|BAB25345.1| unnamed protein product [Mus musculus]
gi|19353493|gb|AAH24419.1| Polymerase (RNA) II (DNA directed) polypeptide F [Mus musculus]
gi|53733956|gb|AAH83552.1| Polymerase (RNA) II (DNA directed) polypeptide F [Rattus
norvegicus]
gi|148672722|gb|EDL04669.1| polymerase (RNA) II (DNA directed) polypeptide F [Mus musculus]
gi|149065948|gb|EDM15821.1| polymerase (RNA) II (DNA directed) polypeptide F [Rattus
norvegicus]
Length = 127
Score = 131 bits (330), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 65/76 (85%), Positives = 68/76 (89%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERARVLGTRALQIAMCAPVMVELEGETDPL IAMKELKARKIPIIIRRYLP
Sbjct: 52 ITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLP 111
Query: 68 DNSYEDWGIDELKIID 83
D SYEDWG+DEL I D
Sbjct: 112 DGSYEDWGVDELIISD 127
>gi|157137087|ref|XP_001663881.1| DNA-directed RNA polymerase subunit rpb6 [Aedes aegypti]
gi|108880924|gb|EAT45149.1| AAEL003552-PA [Aedes aegypti]
Length = 131
Score = 131 bits (330), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 64/77 (83%), Positives = 69/77 (89%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERARVLGTRALQIAMCAP+MVELEGETDPLQIAMKELK RKIPIIIRR+LP
Sbjct: 55 ITTKYMTKYERARVLGTRALQIAMCAPIMVELEGETDPLQIAMKELKQRKIPIIIRRFLP 114
Query: 68 DNSYEDWGIDELKIIDR 84
D+SYEDW IDEL IID
Sbjct: 115 DSSYEDWSIDELIIIDH 131
>gi|114050977|ref|NP_001040147.1| DNA-directed RNA polymerase subunit 6-like protein [Bombyx mori]
gi|87248209|gb|ABD36157.1| DNA-directed RNA polymerase subunit 6-like protein [Bombyx mori]
Length = 132
Score = 130 bits (328), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 65/77 (84%), Positives = 69/77 (89%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELK KIPIIIRRYLP
Sbjct: 56 ITTRYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKHGKIPIIIRRYLP 115
Query: 68 DNSYEDWGIDELKIIDR 84
D+SYEDW IDEL IID+
Sbjct: 116 DHSYEDWSIDELIIIDQ 132
>gi|443707894|gb|ELU03278.1| hypothetical protein CAPTEDRAFT_181288 [Capitella teleta]
Length = 77
Score = 130 bits (328), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 65/76 (85%), Positives = 68/76 (89%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
+ T + +YERARVLGTRALQIAMCAPVMVELEGE DPLQIAMKELKARKIPIIIRRYLP
Sbjct: 1 MTTPYMTKYERARVLGTRALQIAMCAPVMVELEGEKDPLQIAMKELKARKIPIIIRRYLP 60
Query: 68 DNSYEDWGIDELKIID 83
D SYEDWGIDEL I D
Sbjct: 61 DGSYEDWGIDELIISD 76
>gi|263173307|gb|ACY69907.1| RNA polymerase subunit K [Cimex lectularius]
Length = 120
Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/83 (75%), Positives = 70/83 (84%)
Query: 2 VFSPSFIITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPII 61
V + I T + +YERARVLGTRALQIAMCAP+MVEL G+TDPL+IA KELK RKIPII
Sbjct: 38 VQKANRITTKYMTKYERARVLGTRALQIAMCAPIMVELGGDTDPLEIAKKELKQRKIPII 97
Query: 62 IRRYLPDNSYEDWGIDELKIIDR 84
IRRYLPDNSYEDWGIDEL + DR
Sbjct: 98 IRRYLPDNSYEDWGIDELIVTDR 120
>gi|229366770|gb|ACQ58365.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2
[Anoplopoma fimbria]
Length = 127
Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 64/76 (84%), Positives = 67/76 (88%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELK+RKIPIIIRRY P
Sbjct: 52 ITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKSRKIPIIIRRYPP 111
Query: 68 DNSYEDWGIDELKIID 83
D SYEDWG DEL I D
Sbjct: 112 DGSYEDWGCDELIITD 127
>gi|229366082|gb|ACQ58021.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2
[Anoplopoma fimbria]
Length = 127
Score = 130 bits (326), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/76 (82%), Positives = 66/76 (86%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERARVLGTRALQIA CAPVMVELEGETDPLQIAMKELK+RKIP IIRRYLP
Sbjct: 52 ITTPYMTKYERARVLGTRALQIATCAPVMVELEGETDPLQIAMKELKSRKIPTIIRRYLP 111
Query: 68 DNSYEDWGIDELKIID 83
D SYEDWG DEL I D
Sbjct: 112 DGSYEDWGCDELVITD 127
>gi|17864588|ref|NP_524910.1| RNA polymerase II 18kD subunit [Drosophila melanogaster]
gi|194898719|ref|XP_001978915.1| GG12771 [Drosophila erecta]
gi|195497311|ref|XP_002096044.1| GE25464 [Drosophila yakuba]
gi|2500630|sp|Q24320.1|RPAB2_DROME RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC2; Short=RNA polymerases I, II, and III subunit
ABC2; AltName: Full=RPB6 homolog
gi|717185|emb|CAA87655.1| RNA polymerase subunit [Drosophila melanogaster]
gi|7296761|gb|AAF52039.1| RNA polymerase II 18kD subunit [Drosophila melanogaster]
gi|25012908|gb|AAN71541.1| RH21608p [Drosophila melanogaster]
gi|190650618|gb|EDV47873.1| GG12771 [Drosophila erecta]
gi|194182145|gb|EDW95756.1| GE25464 [Drosophila yakuba]
gi|220950520|gb|ACL87803.1| RpII18-PA [synthetic construct]
gi|220959430|gb|ACL92258.1| RpII18-PA [synthetic construct]
Length = 131
Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 61/77 (79%), Positives = 69/77 (89%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERARVLGTRALQIAMCAP+MVEL+GETDPLQIAMKELK +KIPIIIRRYLP
Sbjct: 55 ITTKYMTKYERARVLGTRALQIAMCAPIMVELDGETDPLQIAMKELKQKKIPIIIRRYLP 114
Query: 68 DNSYEDWGIDELKIIDR 84
D+SYEDW IDEL ++D
Sbjct: 115 DHSYEDWSIDELIMVDN 131
>gi|195054236|ref|XP_001994032.1| GH17834 [Drosophila grimshawi]
gi|193895902|gb|EDV94768.1| GH17834 [Drosophila grimshawi]
Length = 131
Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 61/77 (79%), Positives = 69/77 (89%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERARVLGTRALQIAMCAP+MVEL+GETDPLQIAMKELK +KIPIIIRRYLP
Sbjct: 55 ITTKYMTKYERARVLGTRALQIAMCAPIMVELDGETDPLQIAMKELKQKKIPIIIRRYLP 114
Query: 68 DNSYEDWGIDELKIIDR 84
D+SYEDW IDEL ++D
Sbjct: 115 DHSYEDWSIDELVMVDN 131
>gi|195343629|ref|XP_002038398.1| GM10803 [Drosophila sechellia]
gi|194133419|gb|EDW54935.1| GM10803 [Drosophila sechellia]
Length = 131
Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 61/77 (79%), Positives = 69/77 (89%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERARVLGTRALQIAMCAP+MVEL+GETDPLQIAMKELK +KIPIIIRRYLP
Sbjct: 55 ITTKYMTKYERARVLGTRALQIAMCAPIMVELDGETDPLQIAMKELKQKKIPIIIRRYLP 114
Query: 68 DNSYEDWGIDELKIIDR 84
D+SYEDW IDEL ++D
Sbjct: 115 DHSYEDWSIDELIMVDN 131
>gi|195152585|ref|XP_002017217.1| GL21641 [Drosophila persimilis]
gi|198453903|ref|XP_001359394.2| GA11109 [Drosophila pseudoobscura pseudoobscura]
gi|194112274|gb|EDW34317.1| GL21641 [Drosophila persimilis]
gi|198132563|gb|EAL28540.2| GA11109 [Drosophila pseudoobscura pseudoobscura]
Length = 131
Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 61/77 (79%), Positives = 69/77 (89%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERARVLGTRALQIAMCAP+MVEL+GETDPLQIAMKELK +KIPIIIRRYLP
Sbjct: 55 ITTKYMTKYERARVLGTRALQIAMCAPIMVELDGETDPLQIAMKELKQKKIPIIIRRYLP 114
Query: 68 DNSYEDWGIDELKIIDR 84
D+SYEDW IDEL ++D
Sbjct: 115 DHSYEDWSIDELIMVDN 131
>gi|194741754|ref|XP_001953352.1| GF17248 [Drosophila ananassae]
gi|190626411|gb|EDV41935.1| GF17248 [Drosophila ananassae]
Length = 131
Score = 128 bits (322), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 61/77 (79%), Positives = 69/77 (89%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERARVLGTRALQIAMCAP+MVEL+GETDPLQIAMKELK +KIPIIIRRYLP
Sbjct: 55 ITTKYMTKYERARVLGTRALQIAMCAPIMVELDGETDPLQIAMKELKQKKIPIIIRRYLP 114
Query: 68 DNSYEDWGIDELKIIDR 84
D+SYEDW IDEL ++D
Sbjct: 115 DHSYEDWSIDELIMVDN 131
>gi|195444855|ref|XP_002070061.1| GK11847 [Drosophila willistoni]
gi|194166146|gb|EDW81047.1| GK11847 [Drosophila willistoni]
Length = 132
Score = 128 bits (321), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 60/77 (77%), Positives = 69/77 (89%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERARVLGTRALQIAMCAP+MVEL+GETDPLQIAMKELK +KIPIIIRR+LP
Sbjct: 56 ITTKYMTKYERARVLGTRALQIAMCAPIMVELDGETDPLQIAMKELKQKKIPIIIRRFLP 115
Query: 68 DNSYEDWGIDELKIIDR 84
D+SYEDW IDEL ++D
Sbjct: 116 DHSYEDWSIDELIMVDN 132
>gi|405956092|gb|EKC22908.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2
[Crassostrea gigas]
Length = 128
Score = 128 bits (321), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 62/72 (86%), Positives = 66/72 (91%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERARVLGTRALQIAMCAPVMVELEGETDPL IAMKELKARKIPIIIRR+LP
Sbjct: 53 ITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRFLP 112
Query: 68 DNSYEDWGIDEL 79
D S+EDWGIDEL
Sbjct: 113 DGSFEDWGIDEL 124
>gi|440906517|gb|ELR56770.1| hypothetical protein M91_14188 [Bos grunniens mutus]
Length = 128
Score = 127 bits (320), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 65/77 (84%), Positives = 68/77 (88%), Gaps = 1/77 (1%)
Query: 8 IITIVIKRYERARVLGTRALQIAM-CAPVMVELEGETDPLQIAMKELKARKIPIIIRRYL 66
I T + +YERARVLGTRALQIAM CAPVMVELEGETDPL IAMKELKARKIPIIIRRYL
Sbjct: 52 ITTPYMTKYERARVLGTRALQIAMMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYL 111
Query: 67 PDNSYEDWGIDELKIID 83
PD SYEDWG+DEL I D
Sbjct: 112 PDGSYEDWGVDELIITD 128
>gi|260818258|ref|XP_002604300.1| hypothetical protein BRAFLDRAFT_115114 [Branchiostoma floridae]
gi|229289626|gb|EEN60311.1| hypothetical protein BRAFLDRAFT_115114 [Branchiostoma floridae]
Length = 129
Score = 127 bits (319), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 63/76 (82%), Positives = 67/76 (88%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERARVLGTRALQIAM APVMVELEGETDPL IAMKELK RKIPIIIRRYLP
Sbjct: 54 ITTPYMTKYERARVLGTRALQIAMGAPVMVELEGETDPLHIAMKELKVRKIPIIIRRYLP 113
Query: 68 DNSYEDWGIDELKIID 83
D S+EDWGIDEL I+D
Sbjct: 114 DGSFEDWGIDELIILD 129
>gi|195396256|ref|XP_002056748.1| GJ11106 [Drosophila virilis]
gi|194143457|gb|EDW59860.1| GJ11106 [Drosophila virilis]
Length = 131
Score = 127 bits (319), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 60/77 (77%), Positives = 69/77 (89%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERARVLGTRALQIAMCAP+MVEL+GETDPLQIAMKELK +KIPIIIRR+LP
Sbjct: 55 ITTKYMTKYERARVLGTRALQIAMCAPIMVELDGETDPLQIAMKELKQKKIPIIIRRFLP 114
Query: 68 DNSYEDWGIDELKIIDR 84
D+SYEDW IDEL ++D
Sbjct: 115 DHSYEDWSIDELIMVDN 131
>gi|195111658|ref|XP_002000395.1| GI22548 [Drosophila mojavensis]
gi|193916989|gb|EDW15856.1| GI22548 [Drosophila mojavensis]
Length = 131
Score = 127 bits (319), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 60/77 (77%), Positives = 69/77 (89%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERARVLGTRALQIAMCAP+MVEL+GETDPLQIAMKELK +KIPIIIRR+LP
Sbjct: 55 ITTKYMTKYERARVLGTRALQIAMCAPIMVELDGETDPLQIAMKELKQKKIPIIIRRFLP 114
Query: 68 DNSYEDWGIDELKIIDR 84
D+SYEDW IDEL ++D
Sbjct: 115 DHSYEDWSIDELIMVDN 131
>gi|156354426|ref|XP_001623395.1| predicted protein [Nematostella vectensis]
gi|156210090|gb|EDO31295.1| predicted protein [Nematostella vectensis]
Length = 71
Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/71 (85%), Positives = 66/71 (92%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYE 72
+ +YERARVLGTRALQI+M APVMVELEGETDPLQIAMKELKARKIPIIIRRYLPD S+E
Sbjct: 1 MTKYERARVLGTRALQISMGAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDGSHE 60
Query: 73 DWGIDELKIID 83
DWGIDEL + D
Sbjct: 61 DWGIDELIVTD 71
>gi|74151658|dbj|BAE41175.1| unnamed protein product [Mus musculus]
Length = 127
Score = 124 bits (312), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 63/76 (82%), Positives = 66/76 (86%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERARVLGTRALQIAMCAPVMVELE ETDPL IAMK LKARKIPIIIRRYLP
Sbjct: 52 ITTPYMTKYERARVLGTRALQIAMCAPVMVELELETDPLLIAMKGLKARKIPIIIRRYLP 111
Query: 68 DNSYEDWGIDELKIID 83
D SYEDWG+DEL I D
Sbjct: 112 DGSYEDWGVDELIISD 127
>gi|198438019|ref|XP_002129573.1| PREDICTED: similar to DNA directed RNA polymerase II polypeptide F
[Ciona intestinalis]
Length = 128
Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/72 (81%), Positives = 65/72 (90%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERARVLGTRALQ++M APVMVELEGETDPLQIAMKELKA+KIPIIIRRY+P
Sbjct: 54 ITTPYLTKYERARVLGTRALQLSMNAPVMVELEGETDPLQIAMKELKAKKIPIIIRRYMP 113
Query: 68 DNSYEDWGIDEL 79
D SYEDW IDEL
Sbjct: 114 DGSYEDWAIDEL 125
>gi|449691499|ref|XP_004212693.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like, partial [Hydra magnipapillata]
Length = 122
Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/76 (81%), Positives = 67/76 (88%), Gaps = 1/76 (1%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
+ T + +YERARVLGTRALQI+M APVMVELEGETDPLQIAMKELK RKIPIIIRR+LP
Sbjct: 48 VTTPYMTKYERARVLGTRALQISMNAPVMVELEGETDPLQIAMKELKVRKIPIIIRRFLP 107
Query: 68 DNSYEDWGIDELKIID 83
D SYEDW IDEL IID
Sbjct: 108 DGSYEDWAIDEL-IID 122
>gi|194698110|gb|ACF83139.1| unknown [Zea mays]
gi|414871592|tpg|DAA50149.1| TPA: DNA-directed RNA polymerase I, II, and III polypeptide isoform
1 [Zea mays]
gi|414871593|tpg|DAA50150.1| TPA: DNA-directed RNA polymerase I, II, and III polypeptide isoform
2 [Zea mays]
Length = 142
Score = 121 bits (304), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 57/75 (76%), Positives = 65/75 (86%)
Query: 9 ITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPD 68
T + +YERAR+LGTRALQI+M APVMVELEGETDPL+IAMKEL+ARKIP IRRYLPD
Sbjct: 59 TTKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARKIPFTIRRYLPD 118
Query: 69 NSYEDWGIDELKIID 83
SYEDWG+DEL + D
Sbjct: 119 GSYEDWGVDELIVED 133
>gi|195605420|gb|ACG24540.1| DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide
[Zea mays]
gi|195606438|gb|ACG25049.1| DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide
[Zea mays]
gi|195616336|gb|ACG29998.1| DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide
[Zea mays]
gi|413933719|gb|AFW68270.1| DNA-directed RNA polymerase I, II, and III polypeptide [Zea mays]
Length = 142
Score = 121 bits (304), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 57/75 (76%), Positives = 65/75 (86%)
Query: 9 ITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPD 68
T + +YERAR+LGTRALQI+M APVMVELEGETDPL+IAMKEL+ARKIP IRRYLPD
Sbjct: 59 TTKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARKIPFTIRRYLPD 118
Query: 69 NSYEDWGIDELKIID 83
SYEDWG+DEL + D
Sbjct: 119 GSYEDWGVDELIVED 133
>gi|226498696|ref|NP_001148912.1| DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide
[Zea mays]
gi|195623208|gb|ACG33434.1| DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide
[Zea mays]
Length = 142
Score = 121 bits (304), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 57/75 (76%), Positives = 65/75 (86%)
Query: 9 ITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPD 68
T + +YERAR+LGTRALQI+M APVMVELEGETDPL+IAMKEL+ARKIP IRRYLPD
Sbjct: 59 TTKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARKIPFTIRRYLPD 118
Query: 69 NSYEDWGIDELKIID 83
SYEDWG+DEL + D
Sbjct: 119 GSYEDWGVDELIVED 133
>gi|226507150|ref|NP_001149930.1| LOC100283558 [Zea mays]
gi|195635557|gb|ACG37247.1| DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide
[Zea mays]
Length = 142
Score = 121 bits (303), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 57/75 (76%), Positives = 65/75 (86%)
Query: 9 ITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPD 68
T + +YERAR+LGTRALQI+M APVMVELEGETDPL+IAMKEL+ARKIP IRRYLPD
Sbjct: 59 TTKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARKIPFTIRRYLPD 118
Query: 69 NSYEDWGIDELKIID 83
SYEDWG+DEL + D
Sbjct: 119 GSYEDWGVDELIVED 133
>gi|302822553|ref|XP_002992934.1| hypothetical protein SELMODRAFT_236641 [Selaginella moellendorffii]
gi|300139279|gb|EFJ06023.1| hypothetical protein SELMODRAFT_236641 [Selaginella moellendorffii]
Length = 141
Score = 121 bits (303), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 57/75 (76%), Positives = 64/75 (85%)
Query: 9 ITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPD 68
T + +YERARVLGTRALQI+M APVMVELEGETDPL+IAMKEL+ RKIP IRRYLPD
Sbjct: 59 TTKYMTKYERARVLGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 118
Query: 69 NSYEDWGIDELKIID 83
SYEDWG+DEL + D
Sbjct: 119 GSYEDWGVDELIVED 133
>gi|326495054|dbj|BAJ85623.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 142
Score = 121 bits (303), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 57/75 (76%), Positives = 65/75 (86%)
Query: 9 ITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPD 68
T + +YERAR+LGTRALQI+M APVMVELEGETDPL+IAMKEL+ARKIP IRRYLPD
Sbjct: 59 TTKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARKIPFTIRRYLPD 118
Query: 69 NSYEDWGIDELKIID 83
SYEDWG+DEL + D
Sbjct: 119 GSYEDWGVDELIVED 133
>gi|291240385|ref|XP_002740094.1| PREDICTED: DNA directed RNA polymerase II polypeptide F-like
[Saccoglossus kowalevskii]
Length = 131
Score = 121 bits (303), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 62/76 (81%), Positives = 67/76 (88%), Gaps = 1/76 (1%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERARVLGTRALQIAM APVMVELEGETDPL+IA KELK RKIPIIIRRY+P
Sbjct: 55 ITTPYMTKYERARVLGTRALQIAMGAPVMVELEGETDPLEIARKELKVRKIPIIIRRYMP 114
Query: 68 DNSYEDWGIDELKIID 83
D S+EDWGIDEL IID
Sbjct: 115 DGSHEDWGIDEL-IID 129
>gi|290760634|gb|ADD59902.1| DNA-directed RNA polymerase II polypeptide F [Hemiscyllium
ocellatum]
Length = 110
Score = 121 bits (303), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 59/66 (89%), Positives = 61/66 (92%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP
Sbjct: 45 ITTAYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 104
Query: 68 DNSYED 73
D SYED
Sbjct: 105 DGSYED 110
>gi|125600139|gb|EAZ39715.1| hypothetical protein OsJ_24153 [Oryza sativa Japonica Group]
Length = 177
Score = 121 bits (303), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 56/71 (78%), Positives = 64/71 (90%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYE 72
+ +YERAR+LGTRALQI+M APVMVELEGETDPL+IAMKEL+ARKIP IRRYLPD SYE
Sbjct: 98 MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARKIPFTIRRYLPDGSYE 157
Query: 73 DWGIDELKIID 83
DWG+DEL + D
Sbjct: 158 DWGVDELIVED 168
>gi|115471967|ref|NP_001059582.1| Os07g0463100 [Oryza sativa Japonica Group]
gi|22093730|dbj|BAC07023.1| putative DNA-directed RNA polymerase Iia [Oryza sativa Japonica
Group]
gi|113611118|dbj|BAF21496.1| Os07g0463100 [Oryza sativa Japonica Group]
gi|125558240|gb|EAZ03776.1| hypothetical protein OsI_25904 [Oryza sativa Indica Group]
gi|215768441|dbj|BAH00670.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 142
Score = 120 bits (302), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 56/71 (78%), Positives = 64/71 (90%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYE 72
+ +YERAR+LGTRALQI+M APVMVELEGETDPL+IAMKEL+ARKIP IRRYLPD SYE
Sbjct: 63 MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARKIPFTIRRYLPDGSYE 122
Query: 73 DWGIDELKIID 83
DWG+DEL + D
Sbjct: 123 DWGVDELIVED 133
>gi|348673189|gb|EGZ13008.1| hypothetical protein PHYSODRAFT_286529 [Phytophthora sojae]
Length = 135
Score = 120 bits (302), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 57/72 (79%), Positives = 65/72 (90%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERARVLGTRALQI+M APVMV++EGETDPL+IAMKEL+ RKIPIIIRRYLP
Sbjct: 61 ITTRYMTKYERARVLGTRALQISMNAPVMVDIEGETDPLKIAMKELRERKIPIIIRRYLP 120
Query: 68 DNSYEDWGIDEL 79
DNS+EDW IDEL
Sbjct: 121 DNSFEDWSIDEL 132
>gi|301102317|ref|XP_002900246.1| DNA-directed RNA polymerase I, II, and III subunit RPABC2, putative
[Phytophthora infestans T30-4]
gi|262102398|gb|EEY60450.1| DNA-directed RNA polymerase I, II, and III subunit RPABC2, putative
[Phytophthora infestans T30-4]
Length = 136
Score = 120 bits (302), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 57/72 (79%), Positives = 65/72 (90%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERARVLGTRALQI+M APVMV++EGETDPL+IAMKEL+ RKIPIIIRRYLP
Sbjct: 62 ITTRYMTKYERARVLGTRALQISMNAPVMVDIEGETDPLKIAMKELRERKIPIIIRRYLP 121
Query: 68 DNSYEDWGIDEL 79
DNS+EDW IDEL
Sbjct: 122 DNSFEDWSIDEL 133
>gi|302796521|ref|XP_002980022.1| hypothetical protein SELMODRAFT_111873 [Selaginella
moellendorffii]
gi|300152249|gb|EFJ18892.1| hypothetical protein SELMODRAFT_111873 [Selaginella
moellendorffii]
Length = 96
Score = 120 bits (302), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 57/75 (76%), Positives = 64/75 (85%)
Query: 9 ITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPD 68
T + +YERARVLGTRALQI+M APVMVELEGETDPL+IAMKEL+ RKIP IRRYLPD
Sbjct: 14 TTKYMTKYERARVLGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 73
Query: 69 NSYEDWGIDELKIID 83
SYEDWG+DEL + D
Sbjct: 74 GSYEDWGVDELIVED 88
>gi|125544663|gb|EAY90802.1| hypothetical protein OsI_12404 [Oryza sativa Indica Group]
Length = 143
Score = 120 bits (302), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 56/71 (78%), Positives = 64/71 (90%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYE 72
+ +YERAR+LGTRALQI+M APVMVELEGETDPL+IAMKEL+ARKIP IRRYLPD SYE
Sbjct: 64 MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARKIPFTIRRYLPDGSYE 123
Query: 73 DWGIDELKIID 83
DWG+DEL + D
Sbjct: 124 DWGVDELIVED 134
>gi|115453939|ref|NP_001050570.1| Os03g0586600 [Oryza sativa Japonica Group]
gi|50399946|gb|AAT76334.1| putative DNA-directed RNA polymerase II subunit [Oryza sativa
Japonica Group]
gi|108709558|gb|ABF97353.1| DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide,
putative, expressed [Oryza sativa Japonica Group]
gi|113549041|dbj|BAF12484.1| Os03g0586600 [Oryza sativa Japonica Group]
gi|125586969|gb|EAZ27633.1| hypothetical protein OsJ_11577 [Oryza sativa Japonica Group]
gi|215678566|dbj|BAG92221.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 142
Score = 120 bits (301), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 56/71 (78%), Positives = 64/71 (90%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYE 72
+ +YERAR+LGTRALQI+M APVMVELEGETDPL+IAMKEL+ARKIP IRRYLPD SYE
Sbjct: 63 MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARKIPFTIRRYLPDGSYE 122
Query: 73 DWGIDELKIID 83
DWG+DEL + D
Sbjct: 123 DWGVDELIVED 133
>gi|195568410|ref|XP_002102209.1| GD19782 [Drosophila simulans]
gi|194198136|gb|EDX11712.1| GD19782 [Drosophila simulans]
Length = 131
Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/77 (74%), Positives = 66/77 (85%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERARVLGTRALQIAMCAP+MVEL+GETDPLQIAMKELK +KIP+I R LP
Sbjct: 55 ITTKYMTKYERARVLGTRALQIAMCAPIMVELDGETDPLQIAMKELKPKKIPLIFRPPLP 114
Query: 68 DNSYEDWGIDELKIIDR 84
D+SYEDW IDEL ++D
Sbjct: 115 DHSYEDWSIDELIMVDN 131
>gi|357149556|ref|XP_003575153.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like [Brachypodium distachyon]
Length = 142
Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 56/71 (78%), Positives = 64/71 (90%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYE 72
+ +YERAR+LGTRALQI+M APVMVELEGETDPL+IAMKEL+ARKIP IRRYLPD SYE
Sbjct: 63 MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARKIPFTIRRYLPDGSYE 122
Query: 73 DWGIDELKIID 83
DWG+DEL + D
Sbjct: 123 DWGVDELIVED 133
>gi|357121247|ref|XP_003562332.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like [Brachypodium distachyon]
Length = 142
Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 56/71 (78%), Positives = 64/71 (90%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYE 72
+ +YERAR+LGTRALQI+M APVMVELEGETDPL+IAMKEL+ARKIP IRRYLPD SYE
Sbjct: 63 MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARKIPFTIRRYLPDGSYE 122
Query: 73 DWGIDELKIID 83
DWG+DEL + D
Sbjct: 123 DWGVDELIVED 133
>gi|170593167|ref|XP_001901336.1| DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide
[Brugia malayi]
gi|158591403|gb|EDP30016.1| DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide,
putative [Brugia malayi]
gi|402594257|gb|EJW88183.1| DNA-directed RNA polymerase I [Wuchereria bancrofti]
Length = 128
Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/80 (68%), Positives = 66/80 (82%)
Query: 4 SPSFIITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIR 63
S + T + +YERAR+LGTRALQIAM APVMVELEGETDPL+IA KELK +KIP+I+R
Sbjct: 48 STERVTTPFMTKYERARILGTRALQIAMGAPVMVELEGETDPLEIARKELKHQKIPLIVR 107
Query: 64 RYLPDNSYEDWGIDELKIID 83
RYLPD S+EDW +DEL + D
Sbjct: 108 RYLPDGSFEDWSVDELDVTD 127
>gi|393911585|gb|EJD76374.1| hypothetical protein LOAG_16668 [Loa loa]
Length = 128
Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/80 (68%), Positives = 66/80 (82%)
Query: 4 SPSFIITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIR 63
S + T + +YERAR+LGTRALQIAM APVMVELEGETDPL+IA KELK +KIP+I+R
Sbjct: 48 STERVTTPFMTKYERARILGTRALQIAMGAPVMVELEGETDPLEIARKELKHQKIPLIVR 107
Query: 64 RYLPDNSYEDWGIDELKIID 83
RYLPD S+EDW +DEL + D
Sbjct: 108 RYLPDGSFEDWSVDELDVTD 127
>gi|340379028|ref|XP_003388029.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like [Amphimedon queenslandica]
Length = 129
Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/74 (78%), Positives = 68/74 (91%), Gaps = 1/74 (1%)
Query: 10 TIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDN 69
T + +YERARVLGTRALQI+M APVMVELEGETDPL+IAMKELKA+K+PIIIRR+LP++
Sbjct: 57 TPYMTKYERARVLGTRALQISMGAPVMVELEGETDPLKIAMKELKAKKVPIIIRRFLPNS 116
Query: 70 SYEDWGIDELKIID 83
SYEDW +DEL IID
Sbjct: 117 SYEDWAVDEL-IID 129
>gi|17531543|ref|NP_496278.1| Protein RPB-6 [Caenorhabditis elegans]
gi|2500631|sp|Q17684.1|RPAB2_CAEEL RecName: Full=Probable DNA-directed RNA polymerases I, II, and III
subunit RPABC2; Short=RNA polymerases I, II, and III
subunit ABC2; AltName: Full=RPB6 homolog
gi|3874008|emb|CAA90053.1| Protein RPB-6 [Caenorhabditis elegans]
Length = 137
Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/82 (69%), Positives = 67/82 (81%)
Query: 2 VFSPSFIITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPII 61
V + + T + +YERARVLGTRALQIAM APVMVELEGETDPL+IA KELK R+IPII
Sbjct: 55 VPTSEHVTTPFMTKYERARVLGTRALQIAMGAPVMVELEGETDPLEIARKELKQRRIPII 114
Query: 62 IRRYLPDNSYEDWGIDELKIID 83
+RRYLPD SYEDW D+L++ D
Sbjct: 115 VRRYLPDGSYEDWPTDQLQLAD 136
>gi|147794797|emb|CAN62586.1| hypothetical protein VITISV_000776 [Vitis vinifera]
Length = 140
Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/71 (77%), Positives = 63/71 (88%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYE 72
+ +YERAR+LGTRALQI+M APVMVELEGETDPL+IAMKEL+ RKIP IRRYLPD SYE
Sbjct: 61 MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYE 120
Query: 73 DWGIDELKIID 83
DWG+DEL + D
Sbjct: 121 DWGVDELIVED 131
>gi|224136924|ref|XP_002322450.1| predicted protein [Populus trichocarpa]
gi|222869446|gb|EEF06577.1| predicted protein [Populus trichocarpa]
Length = 143
Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/75 (73%), Positives = 64/75 (85%)
Query: 9 ITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPD 68
+ + +YERAR+LGTRALQI+M APVMVELEGETDPL+IAMKEL+ RKIP IRRYLPD
Sbjct: 60 TSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 119
Query: 69 NSYEDWGIDELKIID 83
SYEDWG+DEL + D
Sbjct: 120 GSYEDWGVDELIVED 134
>gi|225446748|ref|XP_002282723.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2 [Vitis vinifera]
gi|302143496|emb|CBI22057.3| unnamed protein product [Vitis vinifera]
Length = 141
Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 55/71 (77%), Positives = 63/71 (88%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYE 72
+ +YERAR+LGTRALQI+M APVMVELEGETDPL+IAMKEL+ RKIP IRRYLPD SYE
Sbjct: 62 MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYE 121
Query: 73 DWGIDELKIID 83
DWG+DEL + D
Sbjct: 122 DWGVDELIVED 132
>gi|242043886|ref|XP_002459814.1| hypothetical protein SORBIDRAFT_02g011150 [Sorghum bicolor]
gi|241923191|gb|EER96335.1| hypothetical protein SORBIDRAFT_02g011150 [Sorghum bicolor]
Length = 143
Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 56/75 (74%), Positives = 64/75 (85%)
Query: 9 ITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPD 68
T + +YERAR+LGTRALQI+M APVMVELEGETDPL+IAMKEL+ARKIP IRRYLPD
Sbjct: 60 TTKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARKIPFTIRRYLPD 119
Query: 69 NSYEDWGIDELKIID 83
SYEDW +DEL + D
Sbjct: 120 GSYEDWSVDELIVED 134
>gi|351724737|ref|NP_001236044.1| uncharacterized protein LOC100305739 [Glycine max]
gi|255626491|gb|ACU13590.1| unknown [Glycine max]
Length = 142
Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 55/71 (77%), Positives = 63/71 (88%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYE 72
+ +YERAR+LGTRALQI+M APVMVELEGETDPL+IAMKEL+ RKIP IRRYLPD SYE
Sbjct: 63 MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYE 122
Query: 73 DWGIDELKIID 83
DWG+DEL + D
Sbjct: 123 DWGVDELIVED 133
>gi|224284680|gb|ACN40072.1| unknown [Picea sitchensis]
Length = 147
Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 55/71 (77%), Positives = 63/71 (88%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYE 72
+ +YERAR+LGTRALQI+M APVMVELEGETDPL+IAMKEL+ RKIP IRRYLPD SYE
Sbjct: 68 MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYE 127
Query: 73 DWGIDELKIID 83
DWG+DEL + D
Sbjct: 128 DWGVDELIVED 138
>gi|225455445|ref|XP_002279544.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2 isoform 1 [Vitis vinifera]
gi|297741100|emb|CBI31831.3| unnamed protein product [Vitis vinifera]
Length = 142
Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 55/71 (77%), Positives = 63/71 (88%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYE 72
+ +YERAR+LGTRALQI+M APVMVELEGETDPL+IAMKEL+ RKIP IRRYLPD SYE
Sbjct: 63 MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYE 122
Query: 73 DWGIDELKIID 83
DWG+DEL + D
Sbjct: 123 DWGVDELIVED 133
>gi|168046743|ref|XP_001775832.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672839|gb|EDQ59371.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 119
Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 56/75 (74%), Positives = 63/75 (84%)
Query: 9 ITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPD 68
T + +YERARVLGTRALQI+M APVMV LEGETDPL+IAMKEL+ RKIP IRRYLPD
Sbjct: 38 TTKYMTKYERARVLGTRALQISMNAPVMVNLEGETDPLEIAMKELRERKIPFTIRRYLPD 97
Query: 69 NSYEDWGIDELKIID 83
SYEDWG+DEL + D
Sbjct: 98 GSYEDWGVDELIVED 112
>gi|449437154|ref|XP_004136357.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like [Cucumis sativus]
Length = 142
Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 55/71 (77%), Positives = 63/71 (88%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYE 72
+ +YERAR+LGTRALQI+M APVMVELEGETDPL+IAMKEL+ RKIP IRRYLPD SYE
Sbjct: 63 MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYE 122
Query: 73 DWGIDELKIID 83
DWG+DEL + D
Sbjct: 123 DWGVDELIVED 133
>gi|4960150|gb|AAD34613.1|AF153277_1 DNA-directed RNA polymerase IIa [Nicotiana tabacum]
gi|4960152|gb|AAD34614.1|AF153278_1 DNA-directed RNA polymerase IIb [Nicotiana tabacum]
Length = 143
Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 55/71 (77%), Positives = 63/71 (88%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYE 72
+ +YERAR+LGTRALQI+M APVMVELEGETDPL+IAMKEL+ RKIP IRRYLPD SYE
Sbjct: 64 MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYE 123
Query: 73 DWGIDELKIID 83
DWG+DEL + D
Sbjct: 124 DWGVDELIVED 134
>gi|116786595|gb|ABK24167.1| unknown [Picea sitchensis]
Length = 147
Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 55/71 (77%), Positives = 63/71 (88%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYE 72
+ +YERAR+LGTRALQI+M APVMVELEGETDPL+IAMKEL+ RKIP IRRYLPD SYE
Sbjct: 68 MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYE 127
Query: 73 DWGIDELKIID 83
DWG+DEL + D
Sbjct: 128 DWGVDELIVED 138
>gi|356535896|ref|XP_003536478.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like [Glycine max]
Length = 142
Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 55/71 (77%), Positives = 63/71 (88%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYE 72
+ +YERAR+LGTRALQI+M APVMVELEGETDPL+IAMKEL+ RKIP IRRYLPD SYE
Sbjct: 63 MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYE 122
Query: 73 DWGIDELKIID 83
DWG+DEL + D
Sbjct: 123 DWGVDELIVED 133
>gi|294462014|gb|ADE76562.1| unknown [Picea sitchensis]
Length = 147
Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 55/75 (73%), Positives = 64/75 (85%)
Query: 9 ITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPD 68
+ + +YERAR+LGTRALQI+M APVMVELEGETDPL+IAMKEL+ RKIP IRRYLPD
Sbjct: 64 TSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 123
Query: 69 NSYEDWGIDELKIID 83
SYEDWG+DEL + D
Sbjct: 124 GSYEDWGVDELIVED 138
>gi|224120092|ref|XP_002318240.1| predicted protein [Populus trichocarpa]
gi|222858913|gb|EEE96460.1| predicted protein [Populus trichocarpa]
Length = 143
Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 55/71 (77%), Positives = 63/71 (88%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYE 72
+ +YERAR+LGTRALQI+M APVMVELEGETDPL+IAMKEL+ RKIP IRRYLPD SYE
Sbjct: 64 MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYE 123
Query: 73 DWGIDELKIID 83
DWG+DEL + D
Sbjct: 124 DWGVDELIVED 134
>gi|268532262|ref|XP_002631259.1| C. briggsae CBR-RPB-6 protein [Caenorhabditis briggsae]
gi|209573629|sp|A8WSV7.1|RPAB2_CAEBR RecName: Full=Probable DNA-directed RNA polymerases I, II, and III
subunit RPABC2; Short=RNA polymerases I, II, and III
subunit ABC2; AltName: Full=RPB6 homolog
Length = 138
Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 56/82 (68%), Positives = 67/82 (81%)
Query: 2 VFSPSFIITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPII 61
V + + T + +YERARVLGTRALQIAM APVMVELEGETDPL+IA KELK R++PII
Sbjct: 56 VPTSEHVTTPFMTKYERARVLGTRALQIAMGAPVMVELEGETDPLEIARKELKQRRVPII 115
Query: 62 IRRYLPDNSYEDWGIDELKIID 83
IRRYLPD SYEDW ++L++ D
Sbjct: 116 IRRYLPDGSYEDWPTEQLQLAD 137
>gi|255539539|ref|XP_002510834.1| DNA-directed RNA polymerase subunit rpb6, putative [Ricinus
communis]
gi|223549949|gb|EEF51436.1| DNA-directed RNA polymerase subunit rpb6, putative [Ricinus
communis]
Length = 124
Score = 118 bits (295), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 55/71 (77%), Positives = 63/71 (88%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYE 72
+ +YERAR+LGTRALQI+M APVMVELEGETDPL+IAMKEL+ RKIP IRRYLPD SYE
Sbjct: 45 MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYE 104
Query: 73 DWGIDELKIID 83
DWG+DEL + D
Sbjct: 105 DWGVDELIVED 115
>gi|357509805|ref|XP_003625191.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2
[Medicago truncatula]
gi|124360124|gb|ABN08140.1| DNA-directed RNA polymerase, 14 to 18 kDa subunit [Medicago
truncatula]
gi|355500206|gb|AES81409.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2
[Medicago truncatula]
gi|388508874|gb|AFK42503.1| unknown [Medicago truncatula]
gi|388517849|gb|AFK46986.1| unknown [Medicago truncatula]
Length = 145
Score = 118 bits (295), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 55/71 (77%), Positives = 63/71 (88%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYE 72
+ +YERAR+LGTRALQI+M APVMVELEGETDPL+IAMKEL+ RKIP IRRYLPD SYE
Sbjct: 66 MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYE 125
Query: 73 DWGIDELKIID 83
DWG+DEL + D
Sbjct: 126 DWGVDELIVED 136
>gi|254569290|ref|XP_002491755.1| RNA polymerase subunit ABC23, common to RNA polymerases I, II, and
III [Komagataella pastoris GS115]
gi|238031552|emb|CAY69475.1| RNA polymerase subunit ABC23, common to RNA polymerases I, II, and
III [Komagataella pastoris GS115]
gi|328351744|emb|CCA38143.1| DNA-directed RNA Polymerase II subunit F [Komagataella pastoris CBS
7435]
Length = 155
Score = 118 bits (295), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 55/77 (71%), Positives = 65/77 (84%), Gaps = 1/77 (1%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
T + +YERAR+LGTRALQI+M APV+V++EGETDPLQIAMKEL RKIP++IRRYLP
Sbjct: 80 TTTPYLTKYERARILGTRALQISMNAPVLVDIEGETDPLQIAMKELSQRKIPLVIRRYLP 139
Query: 68 DNSYEDWGIDELKIIDR 84
D SYEDWG DEL I+D
Sbjct: 140 DGSYEDWGCDEL-IVDN 155
>gi|449446057|ref|XP_004140788.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like [Cucumis sativus]
gi|449485538|ref|XP_004157202.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like [Cucumis sativus]
Length = 143
Score = 117 bits (294), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 55/71 (77%), Positives = 63/71 (88%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYE 72
+ +YERAR+LGTRALQI+M APVMVELEGETDPL+IAMKEL+ RKIP IRRYLPD SYE
Sbjct: 64 MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYE 123
Query: 73 DWGIDELKIID 83
DWG+DEL + D
Sbjct: 124 DWGVDELIVED 134
>gi|224001376|ref|XP_002290360.1| dna-directed RNA polymerase i [Thalassiosira pseudonana CCMP1335]
gi|220973782|gb|EED92112.1| dna-directed RNA polymerase i, partial [Thalassiosira pseudonana
CCMP1335]
Length = 76
Score = 117 bits (294), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 58/76 (76%), Positives = 67/76 (88%), Gaps = 1/76 (1%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERARVLGTRALQI+M APVMV+LEGETDPL+IA KEL+ RKIPI+IRRYLP
Sbjct: 2 ITTRYLTKYERARVLGTRALQISMNAPVMVDLEGETDPLKIAQKELRERKIPIVIRRYLP 61
Query: 68 DNSYEDWGIDELKIID 83
D S+EDWGIDEL I+D
Sbjct: 62 DGSHEDWGIDEL-IVD 76
>gi|448090011|ref|XP_004196962.1| Piso0_004196 [Millerozyma farinosa CBS 7064]
gi|448094390|ref|XP_004197993.1| Piso0_004196 [Millerozyma farinosa CBS 7064]
gi|359378384|emb|CCE84643.1| Piso0_004196 [Millerozyma farinosa CBS 7064]
gi|359379415|emb|CCE83612.1| Piso0_004196 [Millerozyma farinosa CBS 7064]
Length = 158
Score = 117 bits (293), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 55/76 (72%), Positives = 65/76 (85%), Gaps = 1/76 (1%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
T + +YERARVLGTRALQI++ APV+V++EGETDPLQIAMKEL RKIP+++RRYLP
Sbjct: 83 TTTPYMTKYERARVLGTRALQISLNAPVLVDIEGETDPLQIAMKELSQRKIPLVVRRYLP 142
Query: 68 DNSYEDWGIDELKIID 83
D SYEDWG DEL IID
Sbjct: 143 DGSYEDWGCDEL-IID 157
>gi|126136555|ref|XP_001384801.1| subunit common to RNA polymerases I, II, and III [Scheffersomyces
stipitis CBS 6054]
gi|126092023|gb|ABN66772.1| subunit common to RNA polymerases I, II, and III [Scheffersomyces
stipitis CBS 6054]
Length = 157
Score = 117 bits (293), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 55/77 (71%), Positives = 65/77 (84%), Gaps = 1/77 (1%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
T + +YERARVLGTRALQI++ APV+V++EGETDPLQIAMKEL RKIP++IRRYLP
Sbjct: 82 TTTPYMTKYERARVLGTRALQISLNAPVLVDIEGETDPLQIAMKELAQRKIPLVIRRYLP 141
Query: 68 DNSYEDWGIDELKIIDR 84
D SYEDWG DEL I+D
Sbjct: 142 DGSYEDWGCDEL-IVDH 157
>gi|320170068|gb|EFW46967.1| RNA polymerase II core subunit [Capsaspora owczarzaki ATCC 30864]
Length = 139
Score = 117 bits (293), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 52/74 (70%), Positives = 66/74 (89%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
+ + + +YERARVLGTRALQI+M AP+MV+ +GETDPLQIAMKEL+ +KIPIIIRR+LP
Sbjct: 65 VTSPFMTKYERARVLGTRALQISMNAPIMVQRDGETDPLQIAMKELREKKIPIIIRRFLP 124
Query: 68 DNSYEDWGIDELKI 81
D SYEDWG+D+L+I
Sbjct: 125 DGSYEDWGVDQLEI 138
>gi|217071630|gb|ACJ84175.1| unknown [Medicago truncatula]
Length = 145
Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 54/71 (76%), Positives = 62/71 (87%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYE 72
+ +YERAR+ GTRALQI+M APVMVELEGETDPL+IAMKEL+ RKIP IRRYLPD SYE
Sbjct: 66 MTKYERARIFGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYE 125
Query: 73 DWGIDELKIID 83
DWG+DEL + D
Sbjct: 126 DWGVDELIVED 136
>gi|344232897|gb|EGV64770.1| subunit common to RNA polymerases I, II, and [Candida tenuis ATCC
10573]
Length = 154
Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/76 (73%), Positives = 65/76 (85%), Gaps = 1/76 (1%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
T + +YERARVLGTRALQI++ APV+V++EGETDPLQIAMKEL RKIP++IRRYLP
Sbjct: 79 TTTPYMTKYERARVLGTRALQISLNAPVLVDIEGETDPLQIAMKELSQRKIPLVIRRYLP 138
Query: 68 DNSYEDWGIDELKIID 83
D SYEDWG DEL IID
Sbjct: 139 DGSYEDWGCDEL-IID 153
>gi|255726938|ref|XP_002548395.1| DNA-directed RNA polymerases I [Candida tropicalis MYA-3404]
gi|240134319|gb|EER33874.1| DNA-directed RNA polymerases I [Candida tropicalis MYA-3404]
Length = 213
Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 54/77 (70%), Positives = 66/77 (85%), Gaps = 1/77 (1%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
T + +YERAR+LGTRALQI++ APV+V++EGETDPLQIAMKEL RKIP++IRRYLP
Sbjct: 138 TTTPYMTKYERARILGTRALQISLNAPVLVDIEGETDPLQIAMKELAQRKIPLVIRRYLP 197
Query: 68 DNSYEDWGIDELKIIDR 84
D SYEDWG DEL I+D+
Sbjct: 198 DGSYEDWGCDEL-IVDQ 213
>gi|344301857|gb|EGW32162.1| hypothetical protein SPAPADRAFT_61250 [Spathaspora passalidarum
NRRL Y-27907]
Length = 161
Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/77 (68%), Positives = 66/77 (85%), Gaps = 1/77 (1%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
T + +YERAR+LGTRALQI++ APV+V++EGETDPLQIAMKEL RK+P++IRRYLP
Sbjct: 86 TTTPYMTKYERARILGTRALQISLNAPVLVDIEGETDPLQIAMKELAQRKVPLVIRRYLP 145
Query: 68 DNSYEDWGIDELKIIDR 84
D SYEDWG DEL I+D+
Sbjct: 146 DGSYEDWGCDEL-IVDQ 161
>gi|241955777|ref|XP_002420609.1| RNA polymerase subunit common to RNA polymerases I, II, and III,
putative [Candida dubliniensis CD36]
gi|223643951|emb|CAX41691.1| RNA polymerase subunit common to RNA polymerases I, II, and III,
putative [Candida dubliniensis CD36]
Length = 157
Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 54/77 (70%), Positives = 66/77 (85%), Gaps = 1/77 (1%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
T + +YERAR+LGTRALQI++ APV+V++EGETDPLQIAMKEL RKIP++IRRYLP
Sbjct: 82 TTTPYMTKYERARILGTRALQISLNAPVLVDIEGETDPLQIAMKELAQRKIPLVIRRYLP 141
Query: 68 DNSYEDWGIDELKIIDR 84
D SYEDWG DEL I+D+
Sbjct: 142 DGSYEDWGCDEL-IVDQ 157
>gi|260941988|ref|XP_002615160.1| hypothetical protein CLUG_05175 [Clavispora lusitaniae ATCC 42720]
gi|238851583|gb|EEQ41047.1| hypothetical protein CLUG_05175 [Clavispora lusitaniae ATCC 42720]
Length = 156
Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/72 (73%), Positives = 62/72 (86%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
T + +YERARVLGTRALQI++ APV+V++EGETDPLQIAMKEL RKIP++IRRYLP
Sbjct: 81 TTTPYMTKYERARVLGTRALQISLNAPVLVDIEGETDPLQIAMKELAQRKIPLVIRRYLP 140
Query: 68 DNSYEDWGIDEL 79
D SYEDWG DEL
Sbjct: 141 DGSYEDWGCDEL 152
>gi|391331311|ref|XP_003740093.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like [Metaseiulus occidentalis]
Length = 126
Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 57/72 (79%), Positives = 62/72 (86%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERARVLGTRALQIAM APVMVELEGETDPL+IA KELK RKIPI IRRYLP
Sbjct: 50 ITTQYMTKYERARVLGTRALQIAMGAPVMVELEGETDPLEIAKKELKVRKIPIKIRRYLP 109
Query: 68 DNSYEDWGIDEL 79
D S+E WG+DEL
Sbjct: 110 DGSFEVWGVDEL 121
>gi|68488173|ref|XP_712047.1| potential subunit common to RNA polymerase I, II and III [Candida
albicans SC5314]
gi|68488216|ref|XP_712026.1| potential subunit common to RNA polymerase I, II and III [Candida
albicans SC5314]
gi|46433385|gb|EAK92827.1| potential subunit common to RNA polymerase I, II and III [Candida
albicans SC5314]
gi|46433408|gb|EAK92849.1| potential subunit common to RNA polymerase I, II and III [Candida
albicans SC5314]
gi|238882727|gb|EEQ46365.1| DNA-directed RNA polymerases I [Candida albicans WO-1]
Length = 157
Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 54/77 (70%), Positives = 66/77 (85%), Gaps = 1/77 (1%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
T + +YERAR+LGTRALQI++ APV+V++EGETDPLQIAMKEL RKIP++IRRYLP
Sbjct: 82 TTTPYMTKYERARILGTRALQISLNAPVLVDIEGETDPLQIAMKELAQRKIPLVIRRYLP 141
Query: 68 DNSYEDWGIDELKIIDR 84
D SYEDWG DEL I+D+
Sbjct: 142 DGSYEDWGCDEL-IVDQ 157
>gi|312089104|ref|XP_003146119.1| hypothetical protein LOAG_10547 [Loa loa]
Length = 72
Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/71 (74%), Positives = 63/71 (88%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYE 72
+ +YERAR+LGTRALQIAM APVMVELEGETDPL+IA KELK +KIP+I+RRYLPD S+E
Sbjct: 1 MTKYERARILGTRALQIAMGAPVMVELEGETDPLEIARKELKHQKIPLIVRRYLPDGSFE 60
Query: 73 DWGIDELKIID 83
DW +DEL + D
Sbjct: 61 DWSVDELDVTD 71
>gi|320582090|gb|EFW96308.1| DNA-directed RNA polymerases I [Ogataea parapolymorpha DL-1]
Length = 151
Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 55/77 (71%), Positives = 66/77 (85%), Gaps = 1/77 (1%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
T + +YERAR+LGTRALQI+M APV+V++EGETDPLQIA+KEL RKIP+IIRRYLP
Sbjct: 76 TTTPYMTKYERARILGTRALQISMNAPVLVDIEGETDPLQIALKELSQRKIPLIIRRYLP 135
Query: 68 DNSYEDWGIDELKIIDR 84
D SYEDW +DEL IID+
Sbjct: 136 DGSYEDWSVDEL-IIDQ 151
>gi|388514055|gb|AFK45089.1| unknown [Lotus japonicus]
Length = 80
Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 54/71 (76%), Positives = 62/71 (87%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYE 72
+ +YERAR+LGTRALQI+M APVMVEL GETDPL+IAMKEL+ RKIP IRRYLPD SYE
Sbjct: 1 MTKYERARILGTRALQISMNAPVMVELAGETDPLEIAMKELRERKIPFTIRRYLPDGSYE 60
Query: 73 DWGIDELKIID 83
DWG+DEL + D
Sbjct: 61 DWGVDELIVED 71
>gi|448522466|ref|XP_003868694.1| Rpo26 RNA polymerase subunit [Candida orthopsilosis Co 90-125]
gi|380353034|emb|CCG25790.1| Rpo26 RNA polymerase subunit [Candida orthopsilosis]
Length = 158
Score = 115 bits (289), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 54/77 (70%), Positives = 66/77 (85%), Gaps = 1/77 (1%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
T + +YERAR+LGTRALQI++ APV+V++EGETDPLQIAMKEL RKIP++IRRYLP
Sbjct: 83 TTTPYMTKYERARILGTRALQISLNAPVLVDIEGETDPLQIAMKELSQRKIPLVIRRYLP 142
Query: 68 DNSYEDWGIDELKIIDR 84
D SYEDWG DEL I+D+
Sbjct: 143 DGSYEDWGCDEL-IVDQ 158
>gi|354547934|emb|CCE44669.1| hypothetical protein CPAR2_404730 [Candida parapsilosis]
Length = 162
Score = 115 bits (289), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 54/77 (70%), Positives = 66/77 (85%), Gaps = 1/77 (1%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
T + +YERAR+LGTRALQI++ APV+V++EGETDPLQIAMKEL RKIP++IRRYLP
Sbjct: 87 TTTPYMTKYERARILGTRALQISLNAPVLVDIEGETDPLQIAMKELSQRKIPLVIRRYLP 146
Query: 68 DNSYEDWGIDELKIIDR 84
D SYEDWG DEL I+D+
Sbjct: 147 DGSYEDWGCDEL-IVDQ 162
>gi|297792515|ref|XP_002864142.1| hypothetical protein ARALYDRAFT_495261 [Arabidopsis lyrata subsp.
lyrata]
gi|297309977|gb|EFH40401.1| hypothetical protein ARALYDRAFT_495261 [Arabidopsis lyrata subsp.
lyrata]
Length = 144
Score = 115 bits (289), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 53/71 (74%), Positives = 63/71 (88%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYE 72
+ +YERAR+LGTRALQI+M APVMVELEGETDPL+IAMKEL+ RKIP IRRYLPD S+E
Sbjct: 65 MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRQRKIPFTIRRYLPDGSFE 124
Query: 73 DWGIDELKIID 83
+WG+DEL + D
Sbjct: 125 EWGVDELIVED 135
>gi|15224039|ref|NP_178540.1| RNA polymerase Rpb6 [Arabidopsis thaliana]
gi|4544434|gb|AAD22343.1| putative DNA-directed RNA polymerase II subunit [Arabidopsis
thaliana]
gi|33589774|gb|AAQ22653.1| At2g04630 [Arabidopsis thaliana]
gi|110738832|dbj|BAF01339.1| putative DNA-directed RNA polymerase II subunit [Arabidopsis
thaliana]
gi|330250757|gb|AEC05851.1| RNA polymerase Rpb6 [Arabidopsis thaliana]
Length = 144
Score = 115 bits (289), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 54/71 (76%), Positives = 63/71 (88%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYE 72
+ +YERAR+LGTRALQI+M APVMVELEGETDPL+IAMKEL+ RKIP IRRYLPD SYE
Sbjct: 65 MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRQRKIPFTIRRYLPDMSYE 124
Query: 73 DWGIDELKIID 83
+WG+DEL + D
Sbjct: 125 EWGVDELIVED 135
>gi|440791589|gb|ELR12827.1| RNA polymerase subunit [Acanthamoeba castellanii str. Neff]
Length = 102
Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 55/70 (78%), Positives = 62/70 (88%)
Query: 10 TIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDN 69
T + +YERARVLGTRALQI+M AP+MVELEGETDPL+IA KEL+ RKIPIIIRRYLPD
Sbjct: 30 TRYMTKYERARVLGTRALQISMNAPIMVELEGETDPLEIAQKELRERKIPIIIRRYLPDG 89
Query: 70 SYEDWGIDEL 79
S+EDW IDEL
Sbjct: 90 SFEDWSIDEL 99
>gi|388490954|gb|AFK33543.1| unknown [Lotus japonicus]
Length = 144
Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 54/71 (76%), Positives = 62/71 (87%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYE 72
+ +YERAR+LGTRALQI+M APVMVEL GETDPL+IAMKEL+ RKIP IRRYLPD SYE
Sbjct: 65 MTKYERARILGTRALQISMNAPVMVELAGETDPLEIAMKELRERKIPFTIRRYLPDGSYE 124
Query: 73 DWGIDELKIID 83
DWG+DEL + D
Sbjct: 125 DWGVDELIVED 135
>gi|297835766|ref|XP_002885765.1| hypothetical protein ARALYDRAFT_899271 [Arabidopsis lyrata subsp.
lyrata]
gi|297331605|gb|EFH62024.1| hypothetical protein ARALYDRAFT_899271 [Arabidopsis lyrata subsp.
lyrata]
Length = 144
Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 53/71 (74%), Positives = 63/71 (88%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYE 72
+ +YERAR+LGTRALQI+M APVMVELEGETDPL+IAMKEL+ RKIP IRRYLPD S+E
Sbjct: 65 MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRQRKIPFTIRRYLPDGSFE 124
Query: 73 DWGIDELKIID 83
+WG+DEL + D
Sbjct: 125 EWGVDELIVED 135
>gi|15242235|ref|NP_200007.1| RNA polymerase Rpb6 [Arabidopsis thaliana]
gi|13878077|gb|AAK44116.1|AF370301_1 putative DNA-directed RNA polymerase II subunit [Arabidopsis
thaliana]
gi|10177729|dbj|BAB11042.1| DNA-directed RNA polymerase II subunit-like protein [Arabidopsis
thaliana]
gi|17104747|gb|AAL34262.1| putative DNA-directed RNA polymerase II subunit [Arabidopsis
thaliana]
gi|21595784|gb|AAM66131.1| DNA-directed RNA polymerase II subunit-like protein [Arabidopsis
thaliana]
gi|332008765|gb|AED96148.1| RNA polymerase Rpb6 [Arabidopsis thaliana]
Length = 144
Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 53/71 (74%), Positives = 63/71 (88%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYE 72
+ +YERAR+LGTRALQI+M APVMVELEGETDPL+IAMKEL+ RKIP IRRYLPD S+E
Sbjct: 65 MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRQRKIPFTIRRYLPDGSFE 124
Query: 73 DWGIDELKIID 83
+WG+DEL + D
Sbjct: 125 EWGVDELIVED 135
>gi|149237865|ref|XP_001524809.1| DNA-directed RNA polymerases I [Lodderomyces elongisporus NRRL
YB-4239]
gi|146451406|gb|EDK45662.1| DNA-directed RNA polymerases I [Lodderomyces elongisporus NRRL
YB-4239]
Length = 165
Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 54/77 (70%), Positives = 65/77 (84%), Gaps = 1/77 (1%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
T + +YERAR+LGTRALQI++ APV+V++EGETDPLQIAMKEL RKIP++IRRYLP
Sbjct: 90 TTTPYMTKYERARILGTRALQISLNAPVLVDIEGETDPLQIAMKELAQRKIPLVIRRYLP 149
Query: 68 DNSYEDWGIDELKIIDR 84
D SYEDWG DEL I+D
Sbjct: 150 DGSYEDWGCDEL-IVDH 165
>gi|50422341|ref|XP_459733.1| DEHA2E09812p [Debaryomyces hansenii CBS767]
gi|49655401|emb|CAG87969.1| DEHA2E09812p [Debaryomyces hansenii CBS767]
Length = 158
Score = 115 bits (288), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 54/77 (70%), Positives = 65/77 (84%), Gaps = 1/77 (1%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
T + +YERARVLGTRALQI++ APV+V++EGETDPLQIAMKEL RKIP+++RRYLP
Sbjct: 83 TTTPYMTKYERARVLGTRALQISLNAPVLVDIEGETDPLQIAMKELAQRKIPLVVRRYLP 142
Query: 68 DNSYEDWGIDELKIIDR 84
D S+EDWG DEL IID
Sbjct: 143 DGSFEDWGCDEL-IIDH 158
>gi|146412868|ref|XP_001482405.1| hypothetical protein PGUG_05425 [Meyerozyma guilliermondii ATCC
6260]
gi|146393169|gb|EDK41327.1| hypothetical protein PGUG_05425 [Meyerozyma guilliermondii ATCC
6260]
Length = 158
Score = 115 bits (288), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 52/77 (67%), Positives = 65/77 (84%), Gaps = 1/77 (1%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
T + +YERAR+LGTRALQI++ APV+V++EGETDPLQIAMKEL RK+P+++RRYLP
Sbjct: 83 TTTPYMTKYERARILGTRALQISLNAPVLVDIEGETDPLQIAMKELTQRKVPLVVRRYLP 142
Query: 68 DNSYEDWGIDELKIIDR 84
D SYEDWG DEL I+D
Sbjct: 143 DGSYEDWGCDEL-IVDH 158
>gi|325183314|emb|CCA17772.1| DNAdirected RNA polymerase I putative [Albugo laibachii Nc14]
Length = 134
Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 53/72 (73%), Positives = 64/72 (88%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
+ T + ++ERARVLGTRALQI+M APVMV++EGETDPL+IA+KEL+ RKIPIIIRRYLP
Sbjct: 60 VTTKYMTKFERARVLGTRALQISMNAPVMVDIEGETDPLKIALKELRDRKIPIIIRRYLP 119
Query: 68 DNSYEDWGIDEL 79
D S+EDW IDEL
Sbjct: 120 DGSFEDWSIDEL 131
>gi|219111697|ref|XP_002177600.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217410485|gb|EEC50414.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 129
Score = 115 bits (287), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 54/72 (75%), Positives = 63/72 (87%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERARVLGTRALQI+M APVMV+L+GETDPL+IA KEL+ RKIPIIIRRYLP
Sbjct: 55 ITTRYLTKYERARVLGTRALQISMNAPVMVDLDGETDPLRIAEKELRERKIPIIIRRYLP 114
Query: 68 DNSYEDWGIDEL 79
D S+EDW +DEL
Sbjct: 115 DGSHEDWSVDEL 126
>gi|406603005|emb|CCH45473.1| DNA-directed RNA polymerase [Wickerhamomyces ciferrii]
Length = 139
Score = 114 bits (285), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 54/74 (72%), Positives = 64/74 (86%), Gaps = 1/74 (1%)
Query: 10 TIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDN 69
T + +YERAR+LGTRALQI+M APV+V+LEGETDPLQIA+KEL KIP++IRRYLPD
Sbjct: 64 TPYMTKYERARILGTRALQISMNAPVLVDLEGETDPLQIAIKELSQNKIPLVIRRYLPDG 123
Query: 70 SYEDWGIDELKIID 83
SYEDWG DEL I+D
Sbjct: 124 SYEDWGCDEL-IVD 136
>gi|384250139|gb|EIE23619.1| RNA polymerase Rpb6 [Coccomyxa subellipsoidea C-169]
Length = 133
Score = 114 bits (284), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 54/77 (70%), Positives = 64/77 (83%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERAR+LGTRALQI+M APVMVEL GE+DPL+IAMKEL+ +KIP I+RRYLP
Sbjct: 57 ITTRYMTKYERARILGTRALQISMNAPVMVELNGESDPLEIAMKELREKKIPFIVRRYLP 116
Query: 68 DNSYEDWGIDELKIIDR 84
D SYEDW I+EL DR
Sbjct: 117 DGSYEDWTIEELIQSDR 133
>gi|196014319|ref|XP_002117019.1| hypothetical protein TRIADDRAFT_50973 [Trichoplax adhaerens]
gi|190580510|gb|EDV20593.1| hypothetical protein TRIADDRAFT_50973 [Trichoplax adhaerens]
Length = 95
Score = 114 bits (284), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 52/67 (77%), Positives = 61/67 (91%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYE 72
+ +YERAR+LGTRALQI+M APVMVELEGETDPLQIA+KELKA KIP+I+RR+LPD SYE
Sbjct: 24 MTKYERARILGTRALQISMNAPVMVELEGETDPLQIALKELKANKIPMIVRRFLPDGSYE 83
Query: 73 DWGIDEL 79
DW +EL
Sbjct: 84 DWSCNEL 90
>gi|330793050|ref|XP_003284599.1| hypothetical protein DICPUDRAFT_148388 [Dictyostelium purpureum]
gi|325085513|gb|EGC38919.1| hypothetical protein DICPUDRAFT_148388 [Dictyostelium purpureum]
Length = 129
Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/73 (71%), Positives = 63/73 (86%)
Query: 9 ITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPD 68
T + +YERAR+LG+RALQI+M AP+MVELEGETDPLQIA KEL+A+KIP+IIRRYLP+
Sbjct: 57 TTRYMTKYERARLLGSRALQISMNAPIMVELEGETDPLQIAWKELRAKKIPLIIRRYLPN 116
Query: 69 NSYEDWGIDELKI 81
YEDW +DEL I
Sbjct: 117 GMYEDWSVDELSI 129
>gi|71020411|ref|XP_760436.1| hypothetical protein UM04289.1 [Ustilago maydis 521]
gi|46100105|gb|EAK85338.1| hypothetical protein UM04289.1 [Ustilago maydis 521]
Length = 215
Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 51/76 (67%), Positives = 63/76 (82%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERAR+LGTRALQI+M APV+V EGETDPL+IAMKEL A+KIP+++RRYLP
Sbjct: 63 ITTPYMTKYERARILGTRALQISMNAPVLVPTEGETDPLEIAMKELAAKKIPLVVRRYLP 122
Query: 68 DNSYEDWGIDELKIID 83
D SYEDW + EL + D
Sbjct: 123 DGSYEDWTVSELIVSD 138
>gi|302847622|ref|XP_002955345.1| hypothetical protein VOLCADRAFT_106747 [Volvox carteri f.
nagariensis]
gi|300259417|gb|EFJ43645.1| hypothetical protein VOLCADRAFT_106747 [Volvox carteri f.
nagariensis]
Length = 132
Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/76 (69%), Positives = 62/76 (81%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YE+ARVLGTRALQI+M APVMVEL GETDPL+IAMKEL+ +K+P IRRYLP
Sbjct: 57 ITTRYMTKYEKARVLGTRALQISMNAPVMVELSGETDPLEIAMKELREKKVPFTIRRYLP 116
Query: 68 DNSYEDWGIDELKIID 83
D SYEDW I EL + D
Sbjct: 117 DGSYEDWSISELVVPD 132
>gi|19075456|ref|NP_587956.1| DNA-directed RNA polymerase I, II and III subunit Rpb6
[Schizosaccharomyces pombe 972h-]
gi|548818|sp|P36595.1|RPAB2_SCHPO RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC2; Short=RNA polymerases I, II, and III subunit
ABC2; AltName: Full=DNA-directed RNA polymerases I, II,
and III 15 kDa polypeptide; AltName: Full=RPC16
gi|256599720|pdb|3H0G|F Chain F, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|256599732|pdb|3H0G|R Chain R, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|173472|gb|AAA52084.1| RNA polymerase small common phosphorylated subunit
[Schizosaccharomyces pombe]
gi|409477|gb|AAB04116.1| RNA polymerase [Schizosaccharomyces pombe]
gi|3130047|emb|CAA18992.1| DNA-directed RNA polymerase I, II and III subunit Rpb6
[Schizosaccharomyces pombe]
Length = 142
Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 50/72 (69%), Positives = 61/72 (84%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
T + +YERAR+LGTRALQI+M APV+V+LEGETDPLQIAMKEL +KIP+++RRYLP
Sbjct: 70 TTTPYMTKYERARILGTRALQISMNAPVLVDLEGETDPLQIAMKELAQKKIPLLVRRYLP 129
Query: 68 DNSYEDWGIDEL 79
D SYEDW + EL
Sbjct: 130 DGSYEDWSVAEL 141
>gi|213409217|ref|XP_002175379.1| DNA-directed RNA polymerase I, II and III subunit Rpb6
[Schizosaccharomyces japonicus yFS275]
gi|212003426|gb|EEB09086.1| DNA-directed RNA polymerase I, II and III subunit Rpb6
[Schizosaccharomyces japonicus yFS275]
Length = 145
Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 50/70 (71%), Positives = 61/70 (87%)
Query: 10 TIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDN 69
T + +YERAR+LGTRALQI+M APV+V+LEGETDPLQIAMKEL +KIP+++RRYLPD
Sbjct: 75 TPYMTKYERARILGTRALQISMNAPVLVDLEGETDPLQIAMKELAQKKIPLLVRRYLPDG 134
Query: 70 SYEDWGIDEL 79
SYEDW + EL
Sbjct: 135 SYEDWSVSEL 144
>gi|401887349|gb|EJT51339.1| DNA-directed RNA polymerases I, II, and III polypeptide
[Trichosporon asahii var. asahii CBS 2479]
gi|406696322|gb|EKC99613.1| DNA-directed RNA polymerases I, II, and III polypeptide
[Trichosporon asahii var. asahii CBS 8904]
Length = 136
Score = 112 bits (279), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 51/72 (70%), Positives = 64/72 (88%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERARVLGTRALQI+M APV+V +EGETDPL+IA+KEL A+KIP++IRRYLP
Sbjct: 61 ITTPYMTKYERARVLGTRALQISMNAPVLVPVEGETDPLEIALKELAAKKIPLVIRRYLP 120
Query: 68 DNSYEDWGIDEL 79
DNS+EDW ++EL
Sbjct: 121 DNSFEDWKVEEL 132
>gi|367017198|ref|XP_003683097.1| hypothetical protein TDEL_0H00270 [Torulaspora delbrueckii]
gi|359750761|emb|CCE93886.1| hypothetical protein TDEL_0H00270 [Torulaspora delbrueckii]
Length = 159
Score = 111 bits (278), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 52/76 (68%), Positives = 65/76 (85%), Gaps = 1/76 (1%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERAR+LGTRALQI+M APV V+LEGETDPL+IAMKEL +KIP++IRRYLP
Sbjct: 84 ITTPYMTKYERARILGTRALQISMNAPVFVDLEGETDPLRIAMKELAEKKIPLVIRRYLP 143
Query: 68 DNSYEDWGIDELKIID 83
D S+EDW ++EL I+D
Sbjct: 144 DGSFEDWSVEEL-IVD 158
>gi|343425318|emb|CBQ68854.1| probable Rpo26-18kD subunit of DNA-directed RNA polymerases I, II,
III [Sporisorium reilianum SRZ2]
Length = 138
Score = 111 bits (278), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 50/72 (69%), Positives = 61/72 (84%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERAR+LGTRALQI+M APV+V EGETDPL+IAMKEL A+KIP+++RRYLP
Sbjct: 63 ITTPYMTKYERARILGTRALQISMNAPVLVPTEGETDPLEIAMKELSAKKIPLVVRRYLP 122
Query: 68 DNSYEDWGIDEL 79
D SYEDW + EL
Sbjct: 123 DGSYEDWTVSEL 134
>gi|367003129|ref|XP_003686298.1| hypothetical protein TPHA_0G00260 [Tetrapisispora phaffii CBS 4417]
gi|357524599|emb|CCE63864.1| hypothetical protein TPHA_0G00260 [Tetrapisispora phaffii CBS 4417]
Length = 159
Score = 111 bits (278), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 51/76 (67%), Positives = 64/76 (84%), Gaps = 1/76 (1%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
T + +YERAR+LGTRALQI+M APV V+LEGETDPL+IAMKEL +KIP++IRRYLP
Sbjct: 84 TTTPYMTKYERARILGTRALQISMNAPVFVDLEGETDPLKIAMKELSEKKIPLVIRRYLP 143
Query: 68 DNSYEDWGIDELKIID 83
D S+EDW ++EL I+D
Sbjct: 144 DGSFEDWSVEEL-IVD 158
>gi|281209893|gb|EFA84061.1| RNA polymerase II core subunit [Polysphondylium pallidum PN500]
Length = 133
Score = 111 bits (278), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 50/70 (71%), Positives = 63/70 (90%)
Query: 10 TIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDN 69
T + +YERAR+LG+RALQI+M AP+MVELEGETDPLQIA KEL+A+KIP+IIRR+LP+
Sbjct: 60 TRYMTKYERARLLGSRALQISMNAPIMVELEGETDPLQIAWKELRAKKIPLIIRRFLPNG 119
Query: 70 SYEDWGIDEL 79
+YEDW +DEL
Sbjct: 120 AYEDWSVDEL 129
>gi|121702763|ref|XP_001269646.1| DNA-directed RNA polymerase I, II, and III subunit Rpb6
[Aspergillus clavatus NRRL 1]
gi|119397789|gb|EAW08220.1| DNA-directed RNA polymerase I, II, and III subunit Rpb6
[Aspergillus clavatus NRRL 1]
Length = 161
Score = 111 bits (278), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 51/71 (71%), Positives = 61/71 (85%)
Query: 9 ITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPD 68
T + +YERARVLGTRALQI+M APV+V+LEGETDPLQIAMKEL +KIP+I+RRYLPD
Sbjct: 90 TTPYMTKYERARVLGTRALQISMNAPVLVDLEGETDPLQIAMKELNQKKIPLIVRRYLPD 149
Query: 69 NSYEDWGIDEL 79
+YEDW +EL
Sbjct: 150 GTYEDWTCEEL 160
>gi|66803172|ref|XP_635429.1| RNA polymerase II core subunit [Dictyostelium discoideum AX4]
gi|74851598|sp|Q54FA8.1|RPAB2_DICDI RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
rpabc2; Short=RNA polymerases I, II, and III subunit
ABC2; AltName: Full=DNA-directed RNA polymerase II
subunit F; AltName: Full=RPB6 homolog
gi|60463771|gb|EAL61949.1| RNA polymerase II core subunit [Dictyostelium discoideum AX4]
Length = 133
Score = 111 bits (277), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 51/72 (70%), Positives = 63/72 (87%)
Query: 10 TIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDN 69
T + +YERAR+LG+RALQI+M AP+MVELEGETDPLQIA KEL+A+KIP+IIRR+LP+
Sbjct: 62 TRYMTKYERARLLGSRALQISMNAPIMVELEGETDPLQIAWKELRAKKIPLIIRRFLPNG 121
Query: 70 SYEDWGIDELKI 81
YEDW +DEL I
Sbjct: 122 MYEDWSVDELSI 133
>gi|452820688|gb|EME27727.1| DNA-directed RNA Polymerase II subunit F [Galdieria sulphuraria]
Length = 144
Score = 111 bits (277), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 50/72 (69%), Positives = 62/72 (86%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERA++LGTRALQI++ APVMV+LEGETDPL+IA KEL+ RKIPI IRRYLP
Sbjct: 71 ITTRFLTKYERAKILGTRALQISLGAPVMVDLEGETDPLEIAQKELRERKIPITIRRYLP 130
Query: 68 DNSYEDWGIDEL 79
D ++EDW +DEL
Sbjct: 131 DGTFEDWNVDEL 142
>gi|388855621|emb|CCF50844.1| probable Rpo26-18kD subunit of DNA-directed RNA polymerases I, II,
III [Ustilago hordei]
Length = 138
Score = 111 bits (277), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 50/72 (69%), Positives = 61/72 (84%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERAR+LGTRALQI+M APV+V EGETDPL+IAMKEL A+KIP+++RRYLP
Sbjct: 63 ITTPYMTKYERARILGTRALQISMNAPVLVPTEGETDPLEIAMKELAAKKIPLVVRRYLP 122
Query: 68 DNSYEDWGIDEL 79
D SYEDW + EL
Sbjct: 123 DGSYEDWTVSEL 134
>gi|365990642|ref|XP_003672150.1| hypothetical protein NDAI_0J00150 [Naumovozyma dairenensis CBS 421]
gi|343770925|emb|CCD26907.1| hypothetical protein NDAI_0J00150 [Naumovozyma dairenensis CBS 421]
Length = 162
Score = 111 bits (277), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 51/76 (67%), Positives = 64/76 (84%), Gaps = 1/76 (1%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
T + +YERAR+LGTRALQI+M APV V+LEGETDPL+IAMKEL +KIP++IRRYLP
Sbjct: 87 TTTPYMTKYERARILGTRALQISMNAPVFVDLEGETDPLRIAMKELAEKKIPLVIRRYLP 146
Query: 68 DNSYEDWGIDELKIID 83
D S+EDW ++EL I+D
Sbjct: 147 DGSFEDWSVEEL-IVD 161
>gi|366989393|ref|XP_003674464.1| hypothetical protein NCAS_0A15280 [Naumovozyma castellii CBS 4309]
gi|342300327|emb|CCC68086.1| hypothetical protein NCAS_0A15280 [Naumovozyma castellii CBS 4309]
Length = 157
Score = 110 bits (276), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 51/76 (67%), Positives = 64/76 (84%), Gaps = 1/76 (1%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
T + +YERAR+LGTRALQI+M APV V+LEGETDPL+IAMKEL +KIP++IRRYLP
Sbjct: 82 TTTPYMTKYERARILGTRALQISMNAPVFVDLEGETDPLRIAMKELAEKKIPLVIRRYLP 141
Query: 68 DNSYEDWGIDELKIID 83
D S+EDW ++EL I+D
Sbjct: 142 DGSFEDWSVEEL-IVD 156
>gi|410075760|ref|XP_003955462.1| hypothetical protein KAFR_0B00270 [Kazachstania africana CBS 2517]
gi|372462045|emb|CCF56327.1| hypothetical protein KAFR_0B00270 [Kazachstania africana CBS 2517]
Length = 166
Score = 110 bits (276), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 51/76 (67%), Positives = 64/76 (84%), Gaps = 1/76 (1%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
T + +YERAR+LGTRALQI+M APV V+LEGETDPL+IAMKEL +KIP++IRRYLP
Sbjct: 91 TTTPYMTKYERARILGTRALQISMNAPVFVDLEGETDPLRIAMKELAEKKIPLVIRRYLP 150
Query: 68 DNSYEDWGIDELKIID 83
D S+EDW ++EL I+D
Sbjct: 151 DGSFEDWSVEEL-IVD 165
>gi|349952239|dbj|GAA35313.1| DNA-directed RNA polymerases I II and III subunit RPABC2
[Clonorchis sinensis]
Length = 136
Score = 110 bits (276), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 52/72 (72%), Positives = 61/72 (84%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERARVLG RALQ++M APVMVEL+GE DPL+IA KEL+A KIPIIIRRYLP
Sbjct: 61 ITTPYLTKYERARVLGARALQLSMSAPVMVELDGERDPLKIAEKELRANKIPIIIRRYLP 120
Query: 68 DNSYEDWGIDEL 79
D S+EDW +DEL
Sbjct: 121 DGSFEDWSLDEL 132
>gi|290987692|ref|XP_002676556.1| predicted protein [Naegleria gruberi]
gi|284090159|gb|EFC43812.1| predicted protein [Naegleria gruberi]
Length = 130
Score = 110 bits (276), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 63/73 (86%)
Query: 9 ITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPD 68
T + ++E+ARVLGTRALQI+M APV VEL+GETDPLQIA KEL+ +KIP+IIRRYLPD
Sbjct: 55 TTRKMTKFEKARVLGTRALQISMNAPVTVELQGETDPLQIAKKELQQKKIPMIIRRYLPD 114
Query: 69 NSYEDWGIDELKI 81
SYEDW ++EL+I
Sbjct: 115 KSYEDWHVNELEI 127
>gi|255710415|ref|XP_002551491.1| KLTH0A00660p [Lachancea thermotolerans]
gi|238932868|emb|CAR21049.1| KLTH0A00660p [Lachancea thermotolerans CBS 6340]
Length = 155
Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 51/76 (67%), Positives = 64/76 (84%), Gaps = 1/76 (1%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
T + +YERAR+LGTRALQI+M APV V+LEGETDPL+IAMKEL +KIP++IRRYLP
Sbjct: 80 TTTPYMTKYERARILGTRALQISMNAPVFVDLEGETDPLRIAMKELAEKKIPLVIRRYLP 139
Query: 68 DNSYEDWGIDELKIID 83
D S+EDW ++EL I+D
Sbjct: 140 DGSFEDWSVEEL-IVD 154
>gi|400602757|gb|EJP70359.1| RNA polymerase Rpb6 [Beauveria bassiana ARSEF 2860]
Length = 659
Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats.
Identities = 49/70 (70%), Positives = 61/70 (87%)
Query: 10 TIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDN 69
T + +YERAR+LGTRALQI+M APV+V+LEGETDPLQIA+KEL+ +KIP+I+RRYLPD
Sbjct: 81 TPYMTKYERARILGTRALQISMNAPVLVDLEGETDPLQIAIKELREKKIPLIVRRYLPDG 140
Query: 70 SYEDWGIDEL 79
YEDW +EL
Sbjct: 141 YYEDWTCEEL 150
>gi|145343764|ref|XP_001416481.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144576706|gb|ABO94774.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 81
Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 48/70 (68%), Positives = 62/70 (88%)
Query: 10 TIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDN 69
T + +YERAR+LGTRALQI+M APV+V+LEGETDPL+IA KEL+ +++P ++RRY+PD
Sbjct: 10 TPYMTKYERARILGTRALQISMNAPVLVQLEGETDPLEIAGKELREKRVPFVVRRYMPDG 69
Query: 70 SYEDWGIDEL 79
SYEDWGIDEL
Sbjct: 70 SYEDWGIDEL 79
>gi|430813095|emb|CCJ29538.1| unnamed protein product [Pneumocystis jirovecii]
Length = 161
Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 48/72 (66%), Positives = 62/72 (86%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
+ T + +YE+AR+LGTR+LQI+M APV+V+LEGETDPLQIAMKEL +KIP+++RRYLP
Sbjct: 87 MTTPYMTKYEKARILGTRSLQISMNAPVLVDLEGETDPLQIAMKELSQKKIPLLVRRYLP 146
Query: 68 DNSYEDWGIDEL 79
D SYEDW + EL
Sbjct: 147 DGSYEDWAVSEL 158
>gi|50555217|ref|XP_505017.1| YALI0F05082p [Yarrowia lipolytica]
gi|49650887|emb|CAG77824.1| YALI0F05082p [Yarrowia lipolytica CLIB122]
Length = 152
Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 51/75 (68%), Positives = 65/75 (86%), Gaps = 1/75 (1%)
Query: 10 TIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDN 69
T + +YERARVLGTRALQI+M AP++V++E TDPLQIAMKEL+ +KIP++IRRYLPD
Sbjct: 79 TPYMTKYERARVLGTRALQISMNAPILVDIENATDPLQIAMKELQQKKIPLVIRRYLPDG 138
Query: 70 SYEDWGIDELKIIDR 84
S+EDWG DEL I+D+
Sbjct: 139 SFEDWGCDEL-IVDQ 152
>gi|444316388|ref|XP_004178851.1| hypothetical protein TBLA_0B04970 [Tetrapisispora blattae CBS 6284]
gi|387511891|emb|CCH59332.1| hypothetical protein TBLA_0B04970 [Tetrapisispora blattae CBS 6284]
Length = 160
Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 51/76 (67%), Positives = 64/76 (84%), Gaps = 1/76 (1%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
T + +YERAR+LGTRALQI+M APV V+LEGETDPL+IAMKEL +KIP++IRRYLP
Sbjct: 85 TTTPYMTKYERARILGTRALQISMNAPVFVDLEGETDPLKIAMKELAEKKIPLVIRRYLP 144
Query: 68 DNSYEDWGIDELKIID 83
D S+EDW ++EL I+D
Sbjct: 145 DGSFEDWSVEEL-IVD 159
>gi|6325445|ref|NP_015513.1| Rpo26p [Saccharomyces cerevisiae S288c]
gi|133339|sp|P20435.1|RPAB2_YEAST RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC2; Short=RNA polymerases I, II, and III subunit
ABC2; AltName: Full=ABC23; AltName: Full=DNA-directed
RNA polymerases I, II, and III 23 kDa polypeptide
gi|14278328|pdb|1I3Q|F Chain F, Rna Polymerase Ii Crystal Form I At 3.1 A Resolution
gi|14278339|pdb|1I50|F Chain F, Rna Polymerase Ii Crystal Form Ii At 2.8 A Resolution
gi|14278369|pdb|1I6H|F Chain F, Rna Polymerase Ii Elongation Complex
gi|20150717|pdb|1K83|F Chain F, Crystal Structure Of Yeast Rna Polymerase Ii Complexed
With The Inhibitor Alpha Amanitin
gi|30749621|pdb|1NIK|F Chain F, Wild Type Rna Polymerase Ii
gi|30749742|pdb|1NT9|F Chain F, Complete 12-Subunit Rna Polymerase Ii
gi|34810558|pdb|1PQV|F Chain F, Rna Polymerase Ii-Tfiis Complex
gi|46015419|pdb|1R5U|F Chain F, Rna Polymerase Ii Tfiib Complex
gi|46015784|pdb|1SFO|F Chain F, Rna Polymerase Ii Strand Separated Elongation Complex
gi|56965915|pdb|1R9S|F Chain F, Rna Polymerase Ii Strand Separated Elongation Complex,
Matched Nucleotide
gi|56965927|pdb|1R9T|F Chain F, Rna Polymerase Ii Strand Separated Elongation Complex,
Mismatched Nucleotide
gi|56966111|pdb|1TWA|F Chain F, Rna Polymerase Ii Complexed With Atp
gi|56966125|pdb|1TWC|F Chain F, Rna Polymerase Ii Complexed With Gtp
gi|56966135|pdb|1TWF|F Chain F, Rna Polymerase Ii Complexed With Utp At 2.3 A Resolution
gi|56966145|pdb|1TWG|F Chain F, Rna Polymerase Ii Complexed With Ctp
gi|56966155|pdb|1TWH|F Chain F, Rna Polymerase Ii Complexed With 2'datp
gi|58177169|pdb|1WCM|F Chain F, Complete 12-Subunit Rna Polymerase Ii At 3.8 Ang
gi|61679449|pdb|1Y1W|F Chain F, Complete Rna Polymerase Ii Elongation Complex
gi|61679466|pdb|1Y77|F Chain F, Complete Rna Polymerase Ii Elongation Complex With
Substrate Analogue Gmpcpp
gi|61679507|pdb|1Y1V|F Chain F, Refined Rna Polymerase Ii-tfiis Complex
gi|61679520|pdb|1Y1Y|F Chain F, Rna Polymerase Ii-Tfiis-DnaRNA COMPLEX
gi|83754248|pdb|2B63|F Chain F, Complete Rna Polymerase Ii-Rna Inhibitor Complex
gi|110590859|pdb|2B8K|F Chain F, 12-Subunit Rna Polymerase Ii
gi|122920065|pdb|2E2H|F Chain F, Rna Polymerase Ii Elongation Complex At 5 Mm Mg2+ With Gtp
gi|122920080|pdb|2E2I|F Chain F, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dgtp
gi|122920095|pdb|2E2J|F Chain F, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With
Gmpcpp
gi|122921034|pdb|2NVQ|F Chain F, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
2'dutp
gi|122921070|pdb|2NVT|F Chain F, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Gmpcpp
gi|122921086|pdb|2NVX|F Chain F, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dutp
gi|122921101|pdb|2NVY|F Chain F, Rna Polymerase Ii Form Ii In 150 Mm Mn+2
gi|122921113|pdb|2NVZ|F Chain F, Rna Polymerase Ii Elongation Complex With Utp, Updated
112006
gi|134104679|pdb|2JA5|F Chain F, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
A
gi|134104694|pdb|2JA6|F Chain F, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
B
gi|134104715|pdb|2JA7|F Chain F, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
gi|134104727|pdb|2JA7|R Chain R, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
gi|134104739|pdb|2JA8|F Chain F, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
D
gi|146387188|pdb|2YU9|F Chain F, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Utp
gi|160877778|pdb|2R7Z|F Chain F, Cisplatin Lesion Containing Rna Polymerase Ii Elongation
Complex
gi|161172232|pdb|2R92|F Chain F, Elongation Complex Of Rna Polymerase Ii With Artificial
Rdrp Scaffold
gi|161172245|pdb|2R93|F Chain F, Elongation Complex Of Rna Polymerase Ii With A Hepatitis
Delta Virus-Derived Rna Stem Loop
gi|190613467|pdb|2VUM|F Chain F, Alpha-Amanitin Inhibited Complete Rna Polymerase Ii
Elongation Complex
gi|194368738|pdb|3CQZ|F Chain F, Crystal Structure Of 10 Subunit Rna Polymerase Ii In
Complex With The Inhibitor Alpha-Amanitin
gi|224983595|pdb|3FKI|F Chain F, 12-Subunit Rna Polymerase Ii Refined With Zn-Sad Data
gi|239781920|pdb|3GTG|F Chain F, Backtracked Rna Polymerase Ii Complex With 12mer Rna
gi|239781933|pdb|3GTJ|F Chain F, Backtracked Rna Polymerase Ii Complex With 13mer Rna
gi|239781946|pdb|3GTK|F Chain F, Backtracked Rna Polymerase Ii Complex With 18mer Rna
gi|239781959|pdb|3GTL|F Chain F, Backtracked Rna Polymerase Ii Complex With 13mer With G<>u
Mismatch
gi|239781972|pdb|3GTM|F Chain F, Co-Complex Of Backtracked Rna Polymerase Ii With Tfiis
gi|239781986|pdb|3GTO|F Chain F, Backtracked Rna Polymerase Ii Complex With 15mer Rna
gi|239781999|pdb|3GTP|F Chain F, Backtracked Rna Polymerase Ii Complex With 24mer Rna
gi|239782012|pdb|3GTQ|F Chain F, Backtracked Rna Polymerase Ii Complex Induced By Damage
gi|240104516|pdb|3H3V|G Chain G, Yeast Rnap Ii Containing Poly(A)-Signal Sequence In The
Active Site
gi|254839446|pdb|3HOU|F Chain F, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839461|pdb|3HOU|R Chain R, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839476|pdb|3HOV|F Chain F, Complete Rna Polymerase Ii Elongation Complex Ii
gi|254839491|pdb|3HOW|F Chain F, Complete Rna Polymerase Ii Elongation Complex Iii With A
T-U Mismatch And A Frayed Rna 3'-Uridine
gi|254839506|pdb|3HOX|F Chain F, Complete Rna Polymerase Ii Elongation Complex V
gi|254839521|pdb|3HOY|F Chain F, Complete Rna Polymerase Ii Elongation Complex Vi
gi|254839536|pdb|3HOZ|F Chain F, Complete Rna Polymerase Ii Elongation Complex Iv With A
T-U Mismatch And A Frayed Rna 3'-Guanine
gi|257471951|pdb|3I4M|F Chain F, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex D
gi|257471966|pdb|3I4N|F Chain F, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex E
gi|266618770|pdb|3K1F|F Chain F, Crystal Structure Of Rna Polymerase Ii In Complex With
Tfiib
gi|269914556|pdb|3K7A|F Chain F, Crystal Structure Of An Rna Polymerase Ii-Tfiib Complex
gi|295982479|pdb|3M3Y|F Chain F, Rna Polymerase Ii Elongation Complex C
gi|295982492|pdb|3M4O|F Chain F, Rna Polymerase Ii Elongation Complex B
gi|325053968|pdb|3PO2|F Chain F, Arrested Rna Polymerase Ii Elongation Complex
gi|325053983|pdb|3PO3|F Chain F, Arrested Rna Polymerase Ii Reactivation Intermediate
gi|326634543|pdb|3QT1|F Chain F, Rna Polymerase Ii Variant Containing A Chimeric Rpb9-C11
Subunit
gi|343197460|pdb|3RZD|F Chain F, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
gi|343197472|pdb|3RZO|F Chain F, Rna Polymerase Ii Initiation Complex With A 4-Nt Rna
gi|343197484|pdb|3S14|F Chain F, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
gi|343197496|pdb|3S15|F Chain F, Rna Polymerase Ii Initiation Complex With A 7-Nt Rna
gi|343197508|pdb|3S16|F Chain F, Rna Polymerase Ii Initiation Complex With An 8-Nt Rna
gi|343197520|pdb|3S17|F Chain F, Rna Polymerase Ii Initiation Complex With A 9-Nt Rna
gi|343197532|pdb|3S1M|F Chain F, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 1)
gi|343197544|pdb|3S1N|F Chain F, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 2)
gi|343197556|pdb|3S1Q|F Chain F, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Atp
gi|343197568|pdb|3S1R|F Chain F, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Gtp
gi|343197580|pdb|3S2D|F Chain F, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
Containing A 5br- U
gi|343781201|pdb|3S2H|F Chain F, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
Containing A 2[prime]-Iodo Atp
gi|357380841|pdb|4A3C|F Chain F, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid
gi|359546295|pdb|4A3B|F Chain F, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid
gi|359546313|pdb|4A3D|F Chain F, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid
gi|359546330|pdb|4A3E|F Chain F, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546347|pdb|4A3F|F Chain F, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546364|pdb|4A3J|F Chain F, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid And Soaked With Gmpcpp
gi|359546381|pdb|4A3K|F Chain F, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid
gi|359546397|pdb|4A3L|F Chain F, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546414|pdb|4A3M|F Chain F, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|374977884|pdb|4A3G|F Chain F, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid
gi|374977899|pdb|4A3I|F Chain F, Rna Polymerase Ii Binary Complex With Dna
gi|380764984|pdb|4A93|F Chain F, Rna Polymerase Ii Elongation Complex Containing A Cpd
Lesion
gi|414145451|pdb|4BBR|F Chain F, Structure Of Rna Polymerase Ii-tfiib Complex
gi|414145464|pdb|4BBS|F Chain F, Structure Of An Initially Transcribing Rna Polymerase Ii-
Tfiib Complex
gi|172453|gb|AAA34989.1| RNA polymerase II sixth subunit (RP026) [Saccharomyces cerevisiae]
gi|287824|emb|CAA37382.1| RNA polymerase, RPB6 subunit [Saccharomyces cerevisiae]
gi|786304|gb|AAB64616.1| 23 kD polypeptide of RNA Polymerases I, II, and III (Swiss Prot.
accession number P20435) [Saccharomyces cerevisiae]
gi|151942957|gb|EDN61303.1| ABC23 [Saccharomyces cerevisiae YJM789]
gi|190408109|gb|EDV11374.1| RNA polymerases I [Saccharomyces cerevisiae RM11-1a]
gi|259150344|emb|CAY87147.1| Rpo26p [Saccharomyces cerevisiae EC1118]
gi|285815711|tpg|DAA11603.1| TPA: Rpo26p [Saccharomyces cerevisiae S288c]
gi|392296190|gb|EIW07293.1| Rpo26p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 155
Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 51/75 (68%), Positives = 64/75 (85%), Gaps = 1/75 (1%)
Query: 9 ITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPD 68
T + +YERAR+LGTRALQI+M APV V+LEGETDPL+IAMKEL +KIP++IRRYLPD
Sbjct: 81 TTPYMTKYERARILGTRALQISMNAPVFVDLEGETDPLRIAMKELAEKKIPLVIRRYLPD 140
Query: 69 NSYEDWGIDELKIID 83
S+EDW ++EL I+D
Sbjct: 141 GSFEDWSVEEL-IVD 154
>gi|328873121|gb|EGG21488.1| RNA polymerase II core subunit [Dictyostelium fasciculatum]
Length = 125
Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/70 (70%), Positives = 63/70 (90%)
Query: 10 TIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDN 69
T + +YERAR+LG+RALQI+M AP+MVELEGETDPLQIA KEL+A+KIP+I+RR+LP+
Sbjct: 53 TRYMTKYERARLLGSRALQISMNAPIMVELEGETDPLQIAWKELRAKKIPLIVRRFLPNG 112
Query: 70 SYEDWGIDEL 79
+YEDW +DEL
Sbjct: 113 AYEDWSVDEL 122
>gi|349581984|dbj|GAA27141.1| K7_Rpo26p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 155
Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 51/75 (68%), Positives = 64/75 (85%), Gaps = 1/75 (1%)
Query: 9 ITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPD 68
T + +YERAR+LGTRALQI+M APV V+LEGETDPL+IAMKEL +KIP++IRRYLPD
Sbjct: 81 TTPYMTKYERARILGTRALQISMNAPVFVDLEGETDPLRIAMKELAEKKIPLVIRRYLPD 140
Query: 69 NSYEDWGIDELKIID 83
S+EDW ++EL I+D
Sbjct: 141 GSFEDWSVEEL-IVD 154
>gi|50303495|ref|XP_451689.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49640821|emb|CAH02082.1| KLLA0B03476p [Kluyveromyces lactis]
Length = 158
Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 51/76 (67%), Positives = 64/76 (84%), Gaps = 1/76 (1%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
T + +YERAR+LGTRALQI+M APV V+LEGETDPL+IAMKEL +KIP++IRRYLP
Sbjct: 83 TTTPYMTKYERARILGTRALQISMNAPVFVDLEGETDPLRIAMKELAEKKIPLVIRRYLP 142
Query: 68 DNSYEDWGIDELKIID 83
D S+EDW ++EL I+D
Sbjct: 143 DGSFEDWSVEEL-IVD 157
>gi|156848452|ref|XP_001647108.1| hypothetical protein Kpol_1050p110 [Vanderwaltozyma polyspora DSM
70294]
gi|156117791|gb|EDO19250.1| hypothetical protein Kpol_1050p110 [Vanderwaltozyma polyspora DSM
70294]
Length = 153
Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/72 (68%), Positives = 61/72 (84%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
T + +YERAR+LGTRALQI+M APV V+LEGETDPL+IAMKEL +KIP++IRRYLP
Sbjct: 78 TTTPYMTKYERARILGTRALQISMNAPVFVDLEGETDPLRIAMKELAEKKIPLVIRRYLP 137
Query: 68 DNSYEDWGIDEL 79
D S+EDW ++EL
Sbjct: 138 DGSFEDWSVEEL 149
>gi|255941144|ref|XP_002561341.1| Pc16g10310 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211585964|emb|CAP93701.1| Pc16g10310 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 153
Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 52/72 (72%), Positives = 60/72 (83%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
T + +YERARVLGTRALQI+M APV+V+LEGETDPLQIAMKEL +KIP+IIRRYLP
Sbjct: 81 TTTPYLTKYERARVLGTRALQISMNAPVLVDLEGETDPLQIAMKELNQKKIPLIIRRYLP 140
Query: 68 DNSYEDWGIDEL 79
D YEDW +EL
Sbjct: 141 DGWYEDWTCEEL 152
>gi|331223153|ref|XP_003324249.1| DNA-directed RNA Polymerase II subunit F [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|309303239|gb|EFP79830.1| DNA-directed RNA Polymerase II subunit F [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 153
Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/72 (68%), Positives = 60/72 (83%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
T + +YERAR+LGTRALQI+M APV+V L+GE+DPL+IAMKEL RKIP+I+RRYLP
Sbjct: 79 TTTPYMTKYERARILGTRALQISMNAPVLVPLDGESDPLEIAMKELSQRKIPLIVRRYLP 138
Query: 68 DNSYEDWGIDEL 79
D SYEDW + EL
Sbjct: 139 DGSYEDWSVSEL 150
>gi|50288735|ref|XP_446797.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526105|emb|CAG59724.1| unnamed protein product [Candida glabrata]
Length = 159
Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 49/72 (68%), Positives = 61/72 (84%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
T + +YERAR+LGTRALQI+M APV V+LEGETDPL+IAMKEL +KIP++IRRYLP
Sbjct: 83 TTTPYMTKYERARILGTRALQISMNAPVFVDLEGETDPLRIAMKELAEKKIPLVIRRYLP 142
Query: 68 DNSYEDWGIDEL 79
D S+EDW ++EL
Sbjct: 143 DGSFEDWSVEEL 154
>gi|254580974|ref|XP_002496472.1| ZYRO0D00880p [Zygosaccharomyces rouxii]
gi|238939364|emb|CAR27539.1| ZYRO0D00880p [Zygosaccharomyces rouxii]
Length = 165
Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 50/76 (65%), Positives = 64/76 (84%), Gaps = 1/76 (1%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
T + +YERAR+LGTRALQI+M APV V+LEGETDPL+IAMKEL +KIP++IRRY+P
Sbjct: 90 TTTPYMTKYERARILGTRALQISMNAPVFVDLEGETDPLRIAMKELAEKKIPLVIRRYMP 149
Query: 68 DNSYEDWGIDELKIID 83
D S+EDW ++EL I+D
Sbjct: 150 DGSFEDWSVEEL-IVD 164
>gi|45190327|ref|NP_984581.1| AEL279Cp [Ashbya gossypii ATCC 10895]
gi|44983223|gb|AAS52405.1| AEL279Cp [Ashbya gossypii ATCC 10895]
gi|374107796|gb|AEY96703.1| FAEL279Cp [Ashbya gossypii FDAG1]
Length = 154
Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 50/76 (65%), Positives = 64/76 (84%), Gaps = 1/76 (1%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
T + +YERAR+LGTRALQI+M APV V+LEGETDP++IAMKEL +KIP++IRRYLP
Sbjct: 79 TTTPYMTKYERARILGTRALQISMNAPVFVDLEGETDPMRIAMKELAEKKIPLVIRRYLP 138
Query: 68 DNSYEDWGIDELKIID 83
D S+EDW ++EL I+D
Sbjct: 139 DGSFEDWSVEEL-IVD 153
>gi|321261974|ref|XP_003195706.1| DNA-directed RNA polymerases I, II and III polypeptide
[Cryptococcus gattii WM276]
gi|317462180|gb|ADV23919.1| DNA-directed RNA polymerases I, II and III polypeptide, putative
[Cryptococcus gattii WM276]
Length = 149
Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 49/72 (68%), Positives = 64/72 (88%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
+ T + +YERARVLGTRALQI+M APV+V +EGE+DPL+IA+KEL A+KIP++IRRYLP
Sbjct: 74 VTTPYMTKYERARVLGTRALQISMNAPVLVPVEGESDPLEIAIKELAAKKIPLVIRRYLP 133
Query: 68 DNSYEDWGIDEL 79
DNS+EDW ++EL
Sbjct: 134 DNSFEDWKVEEL 145
>gi|392578277|gb|EIW71405.1| hypothetical protein TREMEDRAFT_60336 [Tremella mesenterica DSM
1558]
Length = 147
Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 49/72 (68%), Positives = 63/72 (87%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
+ T + +YERARVLGTRALQI+M APV+V +EGETDPL+IA+KEL +KIP++IRRYLP
Sbjct: 72 VTTPYMTKYERARVLGTRALQISMNAPVLVPVEGETDPLEIALKELAQKKIPLVIRRYLP 131
Query: 68 DNSYEDWGIDEL 79
DNS+EDW ++EL
Sbjct: 132 DNSFEDWKVEEL 143
>gi|56759040|gb|AAW27660.1| SJCHGC05009 protein [Schistosoma japonicum]
Length = 135
Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/72 (70%), Positives = 61/72 (84%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERARVLG RALQ++M APVMVEL+GE DPL+IA KEL+A KIPIIIRR+LP
Sbjct: 60 ITTPYLTKYERARVLGARALQLSMSAPVMVELDGERDPLKIAEKELRANKIPIIIRRFLP 119
Query: 68 DNSYEDWGIDEL 79
D S+EDW +DEL
Sbjct: 120 DGSFEDWSLDEL 131
>gi|58271020|ref|XP_572666.1| DNA-directed RNA polymerases I, II, and III polypeptide
[Cryptococcus neoformans var. neoformans JEC21]
gi|134114830|ref|XP_773713.1| hypothetical protein CNBH1680 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50256341|gb|EAL19066.1| hypothetical protein CNBH1680 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57228925|gb|AAW45359.1| DNA-directed RNA polymerases I, II, and III polypeptide, putative
[Cryptococcus neoformans var. neoformans JEC21]
Length = 148
Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 49/72 (68%), Positives = 64/72 (88%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
+ T + +YERARVLGTRALQI+M APV+V +EGE+DPL+IA+KEL A+KIP++IRRYLP
Sbjct: 73 VTTPYMTKYERARVLGTRALQISMNAPVLVPVEGESDPLEIAIKELAAKKIPLVIRRYLP 132
Query: 68 DNSYEDWGIDEL 79
DNS+EDW ++EL
Sbjct: 133 DNSFEDWKVEEL 144
>gi|405122336|gb|AFR97103.1| DNA-directed RNA polymerase I [Cryptococcus neoformans var. grubii
H99]
Length = 148
Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 49/72 (68%), Positives = 64/72 (88%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
+ T + +YERARVLGTRALQI+M APV+V +EGE+DPL+IA+KEL A+KIP++IRRYLP
Sbjct: 73 VTTPYMTKYERARVLGTRALQISMNAPVLVPVEGESDPLEIAIKELAAKKIPLVIRRYLP 132
Query: 68 DNSYEDWGIDEL 79
DNS+EDW ++EL
Sbjct: 133 DNSFEDWKVEEL 144
>gi|119496755|ref|XP_001265151.1| DNA-directed RNA polymerase I, II, and III subunit Rpb6
[Neosartorya fischeri NRRL 181]
gi|119413313|gb|EAW23254.1| DNA-directed RNA polymerase I, II, and III subunit Rpb6
[Neosartorya fischeri NRRL 181]
Length = 161
Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 50/71 (70%), Positives = 61/71 (85%)
Query: 9 ITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPD 68
T + +YERARVLGTRALQI+M APV+V+LEGETDPLQIA+KEL +KIP+I+RRYLPD
Sbjct: 90 TTPYMTKYERARVLGTRALQISMNAPVLVDLEGETDPLQIAIKELNQKKIPLIVRRYLPD 149
Query: 69 NSYEDWGIDEL 79
+YEDW +EL
Sbjct: 150 GTYEDWTCEEL 160
>gi|393218150|gb|EJD03638.1| RNA polymerase Rpb6 [Fomitiporia mediterranea MF3/22]
Length = 127
Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/72 (70%), Positives = 61/72 (84%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERARVLGTRALQI+M APV+V+L+GETD LQIA+KEL RKIP+IIRRYLP
Sbjct: 53 ITTPYLTKYERARVLGTRALQISMNAPVLVQLDGETDALQIAIKELSQRKIPLIIRRYLP 112
Query: 68 DNSYEDWGIDEL 79
D S+EDW + EL
Sbjct: 113 DGSFEDWSVAEL 124
>gi|70990832|ref|XP_750265.1| DNA-directed RNA polymerase I, II, and III subunit Rpb6
[Aspergillus fumigatus Af293]
gi|66847897|gb|EAL88227.1| DNA-directed RNA polymerase I, II, and III subunit Rpb6
[Aspergillus fumigatus Af293]
Length = 161
Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 50/71 (70%), Positives = 61/71 (85%)
Query: 9 ITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPD 68
T + +YERARVLGTRALQI+M APV+V+LEGETDPLQIA+KEL +KIP+I+RRYLPD
Sbjct: 90 TTPYMTKYERARVLGTRALQISMNAPVLVDLEGETDPLQIAIKELNQKKIPLIVRRYLPD 149
Query: 69 NSYEDWGIDEL 79
+YEDW +EL
Sbjct: 150 GTYEDWTCEEL 160
>gi|449550917|gb|EMD41881.1| hypothetical protein CERSUDRAFT_110440 [Ceriporiopsis subvermispora
B]
Length = 170
Score = 109 bits (272), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 51/72 (70%), Positives = 60/72 (83%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERARVLGTRALQI+M APV+V L+GETD LQIA+KEL RKIP+IIRRYLP
Sbjct: 96 ITTPYLTKYERARVLGTRALQISMNAPVLVPLDGETDALQIAIKELSQRKIPLIIRRYLP 155
Query: 68 DNSYEDWGIDEL 79
D S+EDW + EL
Sbjct: 156 DGSFEDWSVSEL 167
>gi|363750227|ref|XP_003645331.1| hypothetical protein Ecym_2818 [Eremothecium cymbalariae
DBVPG#7215]
gi|356888964|gb|AET38514.1| Hypothetical protein Ecym_2818 [Eremothecium cymbalariae
DBVPG#7215]
Length = 154
Score = 109 bits (272), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 47/72 (65%), Positives = 61/72 (84%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
T + +YERAR+LGTRALQI+M APV V+LEGETDP++IAMKEL +KIP+++RRYLP
Sbjct: 79 TTTPYMTKYERARILGTRALQISMNAPVFVDLEGETDPMRIAMKELAEKKIPLVVRRYLP 138
Query: 68 DNSYEDWGIDEL 79
D S+EDW ++EL
Sbjct: 139 DGSFEDWSVEEL 150
>gi|159130739|gb|EDP55852.1| DNA-directed RNA polymerase I, II, and III subunit Rpb6
[Aspergillus fumigatus A1163]
Length = 161
Score = 109 bits (272), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 50/71 (70%), Positives = 61/71 (85%)
Query: 9 ITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPD 68
T + +YERARVLGTRALQI+M APV+V+LEGETDPLQIA+KEL +KIP+I+RRYLPD
Sbjct: 90 TTPYMTKYERARVLGTRALQISMNAPVLVDLEGETDPLQIAIKELNQKKIPLIVRRYLPD 149
Query: 69 NSYEDWGIDEL 79
+YEDW +EL
Sbjct: 150 GTYEDWTCEEL 160
>gi|154336273|ref|XP_001564372.1| putative DNA-directed RNA polymerase subunit [Leishmania
braziliensis MHOM/BR/75/M2904]
gi|134061407|emb|CAM38432.1| putative DNA-directed RNA polymerase subunit [Leishmania
braziliensis MHOM/BR/75/M2904]
Length = 159
Score = 109 bits (272), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 49/72 (68%), Positives = 60/72 (83%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
+ + V+ +YERARVLGTRALQI+M APV V LEGETDPL IA+KEL+ R+ P+IIRR LP
Sbjct: 73 VTSAVMTKYERARVLGTRALQISMNAPVAVALEGETDPLTIAIKELRERRTPLIIRRVLP 132
Query: 68 DNSYEDWGIDEL 79
DN+YEDW + EL
Sbjct: 133 DNTYEDWSVSEL 144
>gi|403411425|emb|CCL98125.1| predicted protein [Fibroporia radiculosa]
Length = 170
Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 50/72 (69%), Positives = 60/72 (83%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
+ T + +YERARVLGTRALQI+M APV+V L+GETD LQIA+KEL RKIP+IIRRYLP
Sbjct: 96 VTTPYLTKYERARVLGTRALQISMNAPVLVPLDGETDALQIAIKELSQRKIPLIIRRYLP 155
Query: 68 DNSYEDWGIDEL 79
D S+EDW + EL
Sbjct: 156 DGSFEDWSVSEL 167
>gi|256084640|ref|XP_002578535.1| DNA-directed rna polymerase subunit rpb6 [Schistosoma mansoni]
gi|353228703|emb|CCD74874.1| putative DNA-directed rna polymerase subunit rpb6 [Schistosoma
mansoni]
Length = 134
Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 50/72 (69%), Positives = 61/72 (84%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
+ T + +YERARVLG RALQ++M APVMVEL+GE DPL+IA KEL+A KIPIIIRR+LP
Sbjct: 59 VTTPYLTKYERARVLGARALQLSMSAPVMVELDGERDPLKIAEKELRANKIPIIIRRFLP 118
Query: 68 DNSYEDWGIDEL 79
D S+EDW +DEL
Sbjct: 119 DGSFEDWSLDEL 130
>gi|353251638|pdb|3J0K|F Chain F, Orientation Of Rna Polymerase Ii Within The Human
Vp16-Mediator-Pol Ii-Tfiif Assembly
Length = 84
Score = 108 bits (270), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 51/74 (68%), Positives = 64/74 (86%), Gaps = 1/74 (1%)
Query: 10 TIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDN 69
T + +YERAR+LGTRALQI+M APV V+LEGETDPL+IAMKEL +KIP++IRRYLPD
Sbjct: 11 TPYMTKYERARILGTRALQISMNAPVFVDLEGETDPLRIAMKELAEKKIPLVIRRYLPDG 70
Query: 70 SYEDWGIDELKIID 83
S+EDW ++EL I+D
Sbjct: 71 SFEDWSVEEL-IVD 83
>gi|315044053|ref|XP_003171402.1| DNA-directed RNA polymerase I [Arthroderma gypseum CBS 118893]
gi|311343745|gb|EFR02948.1| DNA-directed RNA polymerase I [Arthroderma gypseum CBS 118893]
Length = 161
Score = 108 bits (270), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 51/78 (65%), Positives = 62/78 (79%)
Query: 2 VFSPSFIITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPII 61
V + T + +YERARVLGTRALQI+M AP++V+LEGETDPLQIA+KEL +KIP+I
Sbjct: 83 VANDQRTTTPYMTKYERARVLGTRALQISMNAPILVDLEGETDPLQIALKELNQKKIPLI 142
Query: 62 IRRYLPDNSYEDWGIDEL 79
IRRYLPD YEDW +EL
Sbjct: 143 IRRYLPDGWYEDWTCEEL 160
>gi|401428389|ref|XP_003878677.1| putative DNA-directed RNA polymerase subunit [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322494926|emb|CBZ30229.1| putative DNA-directed RNA polymerase subunit [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 159
Score = 108 bits (270), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 49/72 (68%), Positives = 60/72 (83%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
+ + V+ +YERARVLGTRALQI+M APV V LEGETDPL IA+KEL+ R+ P+IIRR LP
Sbjct: 73 VTSAVMTKYERARVLGTRALQISMNAPVAVALEGETDPLTIAVKELRERRTPLIIRRVLP 132
Query: 68 DNSYEDWGIDEL 79
DN+YEDW + EL
Sbjct: 133 DNTYEDWSVSEL 144
>gi|398022190|ref|XP_003864257.1| DNA-directed RNA polymerase subunit, putative [Leishmania donovani]
gi|322502492|emb|CBZ37575.1| DNA-directed RNA polymerase subunit, putative [Leishmania donovani]
Length = 159
Score = 108 bits (270), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 49/72 (68%), Positives = 60/72 (83%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
+ + V+ +YERARVLGTRALQI+M APV V LEGETDPL IA+KEL+ R+ P+IIRR LP
Sbjct: 73 VTSAVMTKYERARVLGTRALQISMNAPVAVALEGETDPLTIAVKELRERRTPLIIRRVLP 132
Query: 68 DNSYEDWGIDEL 79
DN+YEDW + EL
Sbjct: 133 DNTYEDWSVSEL 144
>gi|157875592|ref|XP_001686182.1| putative DNA-directed RNA polymerase subunit [Leishmania major
strain Friedlin]
gi|68129256|emb|CAJ07796.1| putative DNA-directed RNA polymerase subunit [Leishmania major
strain Friedlin]
Length = 159
Score = 108 bits (270), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 49/72 (68%), Positives = 60/72 (83%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
+ + V+ +YERARVLGTRALQI+M APV V LEGETDPL IA+KEL+ R+ P+IIRR LP
Sbjct: 73 VTSAVMTKYERARVLGTRALQISMNAPVAVALEGETDPLTIAVKELRERRTPLIIRRVLP 132
Query: 68 DNSYEDWGIDEL 79
DN+YEDW + EL
Sbjct: 133 DNTYEDWSVSEL 144
>gi|326476037|gb|EGE00047.1| DNA-directed RNA polymerase I [Trichophyton tonsurans CBS 112818]
Length = 161
Score = 108 bits (270), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 51/78 (65%), Positives = 62/78 (79%)
Query: 2 VFSPSFIITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPII 61
V + T + +YERARVLGTRALQI+M AP++V+LEGETDPLQIA+KEL +KIP+I
Sbjct: 83 VANDQRTTTPYMTKYERARVLGTRALQISMNAPILVDLEGETDPLQIALKELNQKKIPLI 142
Query: 62 IRRYLPDNSYEDWGIDEL 79
IRRYLPD YEDW +EL
Sbjct: 143 IRRYLPDGWYEDWTCEEL 160
>gi|327296802|ref|XP_003233095.1| DNA-directed RNA polymerase I [Trichophyton rubrum CBS 118892]
gi|326464401|gb|EGD89854.1| DNA-directed RNA polymerase I [Trichophyton rubrum CBS 118892]
Length = 161
Score = 108 bits (270), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 51/78 (65%), Positives = 62/78 (79%)
Query: 2 VFSPSFIITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPII 61
V + T + +YERARVLGTRALQI+M AP++V+LEGETDPLQIA+KEL +KIP+I
Sbjct: 83 VANDQRTTTPYMTKYERARVLGTRALQISMNAPILVDLEGETDPLQIALKELNQKKIPLI 142
Query: 62 IRRYLPDNSYEDWGIDEL 79
IRRYLPD YEDW +EL
Sbjct: 143 IRRYLPDGWYEDWTCEEL 160
>gi|326481266|gb|EGE05276.1| hypothetical protein TEQG_04432 [Trichophyton equinum CBS 127.97]
Length = 155
Score = 108 bits (270), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 51/78 (65%), Positives = 62/78 (79%)
Query: 2 VFSPSFIITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPII 61
V + T + +YERARVLGTRALQI+M AP++V+LEGETDPLQIA+KEL +KIP+I
Sbjct: 77 VANDQRTTTPYMTKYERARVLGTRALQISMNAPILVDLEGETDPLQIALKELNQKKIPLI 136
Query: 62 IRRYLPDNSYEDWGIDEL 79
IRRYLPD YEDW +EL
Sbjct: 137 IRRYLPDGWYEDWTCEEL 154
>gi|146098767|ref|XP_001468465.1| putative DNA-directed RNA polymerase subunit [Leishmania infantum
JPCM5]
gi|134072833|emb|CAM71549.1| putative DNA-directed RNA polymerase subunit [Leishmania infantum
JPCM5]
Length = 159
Score = 108 bits (270), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 49/72 (68%), Positives = 60/72 (83%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
+ + V+ +YERARVLGTRALQI+M APV V LEGETDPL IA+KEL+ R+ P+IIRR LP
Sbjct: 73 VTSAVMTKYERARVLGTRALQISMNAPVAVALEGETDPLTIAVKELRERRTPLIIRRVLP 132
Query: 68 DNSYEDWGIDEL 79
DN+YEDW + EL
Sbjct: 133 DNTYEDWSVSEL 144
>gi|339244629|ref|XP_003378240.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2
[Trichinella spiralis]
gi|316972869|gb|EFV56515.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2
[Trichinella spiralis]
Length = 145
Score = 108 bits (270), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 52/76 (68%), Positives = 63/76 (82%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERARVLGTRALQI+M APV+VELE E D L+IA KELKAR+IP+++RRY+P
Sbjct: 69 ITTPYMTKYERARVLGTRALQISMGAPVLVELEDERDALEIARKELKARRIPLVVRRYMP 128
Query: 68 DNSYEDWGIDELKIID 83
D SYEDW +DEL I D
Sbjct: 129 DGSYEDWRVDELIITD 144
>gi|296811616|ref|XP_002846146.1| DNA-directed RNA polymerase I [Arthroderma otae CBS 113480]
gi|238843534|gb|EEQ33196.1| DNA-directed RNA polymerase I [Arthroderma otae CBS 113480]
Length = 161
Score = 108 bits (270), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 51/78 (65%), Positives = 62/78 (79%)
Query: 2 VFSPSFIITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPII 61
V + T + +YERARVLGTRALQI+M AP++V+LEGETDPLQIA+KEL +KIP+I
Sbjct: 83 VANDQRTTTPYMTKYERARVLGTRALQISMNAPILVDLEGETDPLQIALKELNQKKIPLI 142
Query: 62 IRRYLPDNSYEDWGIDEL 79
IRRYLPD YEDW +EL
Sbjct: 143 IRRYLPDGWYEDWTCEEL 160
>gi|255082354|ref|XP_002504163.1| predicted protein [Micromonas sp. RCC299]
gi|226519431|gb|ACO65421.1| predicted protein [Micromonas sp. RCC299]
Length = 138
Score = 108 bits (269), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 48/76 (63%), Positives = 63/76 (82%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
T + +YERAR+LGTRALQI+M APV+V+L+GETDPL+IA KEL+ ++IP +RRYLP
Sbjct: 56 TTTPYMTKYERARILGTRALQISMNAPVLVQLDGETDPLEIAGKELREKRIPFTVRRYLP 115
Query: 68 DNSYEDWGIDELKIID 83
D S+EDWG+DEL + D
Sbjct: 116 DGSWEDWGVDELIVED 131
>gi|336376971|gb|EGO05306.1| hypothetical protein SERLA73DRAFT_174398 [Serpula lacrymans var.
lacrymans S7.3]
gi|336390020|gb|EGO31163.1| hypothetical protein SERLADRAFT_455900 [Serpula lacrymans var.
lacrymans S7.9]
Length = 170
Score = 108 bits (269), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 49/72 (68%), Positives = 60/72 (83%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
+ T + +YERAR+LGTRALQI+M APV+V L+GETD LQIA+KEL RKIP+IIRRYLP
Sbjct: 96 VTTPYLTKYERARILGTRALQISMNAPVLVPLDGETDALQIAIKELSQRKIPLIIRRYLP 155
Query: 68 DNSYEDWGIDEL 79
D S+EDW + EL
Sbjct: 156 DGSFEDWSVSEL 167
>gi|346327285|gb|EGX96881.1| DNA-directed RNA polymerases I [Cordyceps militaris CM01]
Length = 153
Score = 108 bits (269), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 49/71 (69%), Positives = 61/71 (85%)
Query: 9 ITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPD 68
T + +YERAR+LGTRALQI+M APV+V+LEGETDPLQIA+KEL+ +KIP+I+RRYLPD
Sbjct: 81 TTPYMTKYERARILGTRALQISMNAPVLVDLEGETDPLQIAIKELREKKIPLIVRRYLPD 140
Query: 69 NSYEDWGIDEL 79
YEDW +EL
Sbjct: 141 GYYEDWTCEEL 151
>gi|340905234|gb|EGS17602.1| hypothetical protein CTHT_0069410 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 158
Score = 108 bits (269), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 49/72 (68%), Positives = 61/72 (84%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
T + +YERAR+LGTRALQI+M APV+V+LEGETDPLQIA+KEL+ +KIP+I+RRYLP
Sbjct: 85 TTTPFMTKYERARILGTRALQISMNAPVLVDLEGETDPLQIAIKELREKKIPLIVRRYLP 144
Query: 68 DNSYEDWGIDEL 79
D YEDW +EL
Sbjct: 145 DGYYEDWTCEEL 156
>gi|393244461|gb|EJD51973.1| RNA polymerase Rpb6 [Auricularia delicata TFB-10046 SS5]
Length = 110
Score = 108 bits (269), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 51/72 (70%), Positives = 60/72 (83%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERARVLGTRALQI+M APV+V LEGETD LQIA+KEL +KIP+IIRRYLP
Sbjct: 36 ITTPYLTKYERARVLGTRALQISMNAPVLVPLEGETDALQIAIKELSQKKIPLIIRRYLP 95
Query: 68 DNSYEDWGIDEL 79
D S+EDW I +L
Sbjct: 96 DGSFEDWSIKDL 107
>gi|242803045|ref|XP_002484094.1| DNA-directed RNA polymerase I, II, and III subunit Rpb6
[Talaromyces stipitatus ATCC 10500]
gi|218717439|gb|EED16860.1| DNA-directed RNA polymerase I, II, and III subunit Rpb6
[Talaromyces stipitatus ATCC 10500]
Length = 162
Score = 108 bits (269), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 51/71 (71%), Positives = 60/71 (84%)
Query: 9 ITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPD 68
T + +YERARVLGTRALQI+M APV+V+LEGETDPLQIA+KEL +KIP+IIRRYLPD
Sbjct: 91 TTPYMTKYERARVLGTRALQISMNAPVLVDLEGETDPLQIAIKELNQKKIPLIIRRYLPD 150
Query: 69 NSYEDWGIDEL 79
YEDW +EL
Sbjct: 151 GYYEDWTCEEL 161
>gi|392571015|gb|EIW64187.1| RNA polymerase Rpb6 [Trametes versicolor FP-101664 SS1]
Length = 165
Score = 108 bits (269), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 50/72 (69%), Positives = 60/72 (83%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
+ T + +YERARVLGTRALQI+M APV+V L+GETD LQIA+KEL RKIP+IIRRYLP
Sbjct: 91 VTTPYLTKYERARVLGTRALQISMNAPVLVPLDGETDALQIAIKELSQRKIPLIIRRYLP 150
Query: 68 DNSYEDWGIDEL 79
D S+EDW + EL
Sbjct: 151 DGSFEDWSVSEL 162
>gi|328852180|gb|EGG01328.1| hypothetical protein MELLADRAFT_53646 [Melampsora larici-populina
98AG31]
Length = 70
Score = 107 bits (268), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 48/67 (71%), Positives = 59/67 (88%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYE 72
+ +YERAR+LGTRALQI+M APV+V L+GE+DPL+IAMKEL RKIP+I+RRYLPD SYE
Sbjct: 1 MTKYERARILGTRALQISMNAPVLVPLDGESDPLEIAMKELSQRKIPLIVRRYLPDGSYE 60
Query: 73 DWGIDEL 79
DW + EL
Sbjct: 61 DWSVSEL 67
>gi|353244095|emb|CCA75548.1| probable Rpo26-18kD subunit of DNA-directed RNA polymerases I, II,
III [Piriformospora indica DSM 11827]
Length = 164
Score = 107 bits (268), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 49/72 (68%), Positives = 60/72 (83%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERAR+LGTRALQI+M AP++V EGETDPLQIA+KEL RKIP++IRRYLP
Sbjct: 90 ITTPYLTKYERARILGTRALQISMNAPILVPAEGETDPLQIAIKELAQRKIPLVIRRYLP 149
Query: 68 DNSYEDWGIDEL 79
D S+EDW + EL
Sbjct: 150 DGSFEDWSVSEL 161
>gi|392597744|gb|EIW87066.1| RNA polymerase Rpb6 [Coniophora puteana RWD-64-598 SS2]
Length = 113
Score = 107 bits (268), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 50/72 (69%), Positives = 60/72 (83%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERAR+LGTRALQI+M APV+V L+GETD LQIA+KEL RKIP+IIRRYLP
Sbjct: 39 ITTPYLTKYERARILGTRALQISMNAPVLVPLDGETDALQIAIKELSQRKIPLIIRRYLP 98
Query: 68 DNSYEDWGIDEL 79
D S+EDW + EL
Sbjct: 99 DGSFEDWSVSEL 110
>gi|395334449|gb|EJF66825.1| RNA polymerase Rpb6 [Dichomitus squalens LYAD-421 SS1]
Length = 165
Score = 107 bits (268), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 50/72 (69%), Positives = 60/72 (83%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
+ T + +YERARVLGTRALQI+M APV+V L+GETD LQIA+KEL RKIP+IIRRYLP
Sbjct: 91 VTTPYLTKYERARVLGTRALQISMNAPVLVPLDGETDALQIAIKELSQRKIPLIIRRYLP 150
Query: 68 DNSYEDWGIDEL 79
D S+EDW + EL
Sbjct: 151 DGSFEDWSVSEL 162
>gi|116192063|ref|XP_001221844.1| hypothetical protein CHGG_05749 [Chaetomium globosum CBS 148.51]
gi|88181662|gb|EAQ89130.1| hypothetical protein CHGG_05749 [Chaetomium globosum CBS 148.51]
Length = 160
Score = 107 bits (268), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 48/72 (66%), Positives = 61/72 (84%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
T + +YE+AR+LGTRALQI+M APV+V+LEGETDPLQIA+KEL+ +KIP+I+RRYLP
Sbjct: 87 TTTPFMTKYEKARILGTRALQISMNAPVLVDLEGETDPLQIAIKELREKKIPLIVRRYLP 146
Query: 68 DNSYEDWGIDEL 79
D YEDW +EL
Sbjct: 147 DGYYEDWSCEEL 158
>gi|302695611|ref|XP_003037484.1| RNA polymerase Rpb6 [Schizophyllum commune H4-8]
gi|300111181|gb|EFJ02582.1| RNA polymerase Rpb6, partial [Schizophyllum commune H4-8]
Length = 176
Score = 107 bits (268), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 49/72 (68%), Positives = 60/72 (83%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
+ T + +YERAR+LGTRALQI+M APV+V L+GETD LQIA+KEL RKIP+IIRRYLP
Sbjct: 102 VTTPYLTKYERARILGTRALQISMNAPVLVPLDGETDALQIAIKELSQRKIPLIIRRYLP 161
Query: 68 DNSYEDWGIDEL 79
D S+EDW + EL
Sbjct: 162 DGSFEDWSVSEL 173
>gi|145229113|ref|XP_001388865.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2
[Aspergillus niger CBS 513.88]
gi|134054964|emb|CAK36973.1| unnamed protein product [Aspergillus niger]
gi|350638035|gb|EHA26391.1| hypothetical protein ASPNIDRAFT_36183 [Aspergillus niger ATCC 1015]
gi|358372043|dbj|GAA88648.1| DNA-directed RNA polymerase I, II, and III subunit Rpb6
[Aspergillus kawachii IFO 4308]
Length = 160
Score = 107 bits (268), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 50/71 (70%), Positives = 60/71 (84%)
Query: 9 ITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPD 68
T + +YERARVLGTRALQI+M APV+V+LEGETDPLQIA+KEL +KIP+I+RRYLPD
Sbjct: 89 TTPYMTKYERARVLGTRALQISMNAPVLVDLEGETDPLQIAIKELNQKKIPLIVRRYLPD 148
Query: 69 NSYEDWGIDEL 79
YEDW +EL
Sbjct: 149 GWYEDWTCEEL 159
>gi|299756146|ref|XP_001829127.2| subunit common to RNA polymerase I [Coprinopsis cinerea
okayama7#130]
gi|298411543|gb|EAU92762.2| subunit common to RNA polymerase I [Coprinopsis cinerea
okayama7#130]
Length = 163
Score = 107 bits (267), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 49/72 (68%), Positives = 60/72 (83%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
+ T + +YERAR+LGTRALQI+M APV+V L+GETD LQIA+KEL RKIP+IIRRYLP
Sbjct: 89 VTTPYLTKYERARILGTRALQISMNAPVLVPLDGETDALQIAIKELSQRKIPLIIRRYLP 148
Query: 68 DNSYEDWGIDEL 79
D S+EDW + EL
Sbjct: 149 DGSFEDWSVSEL 160
>gi|308799962|ref|XP_003074762.1| RNA polymerase subunit K (ISS) [Ostreococcus tauri]
gi|116061302|emb|CAL52020.1| RNA polymerase subunit K (ISS) [Ostreococcus tauri]
Length = 149
Score = 107 bits (267), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 49/76 (64%), Positives = 63/76 (82%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
T + +YERARVLGTRALQI+M APV+V+LEGETDPL+IA KEL+ +++P ++RRYLP
Sbjct: 68 TTTPYMTKYERARVLGTRALQISMNAPVLVQLEGETDPLEIAGKELREKRVPFVVRRYLP 127
Query: 68 DNSYEDWGIDELKIID 83
D SYEDW I+EL + D
Sbjct: 128 DGSYEDWCIEELIVHD 143
>gi|238486558|ref|XP_002374517.1| DNA-directed RNA polymerase I, II, and III subunit Rpb6
[Aspergillus flavus NRRL3357]
gi|317144162|ref|XP_003189570.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2
[Aspergillus oryzae RIB40]
gi|220699396|gb|EED55735.1| DNA-directed RNA polymerase I, II, and III subunit Rpb6
[Aspergillus flavus NRRL3357]
Length = 159
Score = 107 bits (267), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 50/72 (69%), Positives = 60/72 (83%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
T + +YERARVLGTRALQI+M APV+V+LEGETDPLQIA+KEL +KIP+I+RRYLP
Sbjct: 87 TTTPYMTKYERARVLGTRALQISMNAPVLVDLEGETDPLQIAIKELNQKKIPLIVRRYLP 146
Query: 68 DNSYEDWGIDEL 79
D YEDW +EL
Sbjct: 147 DGWYEDWTCEEL 158
>gi|403216566|emb|CCK71063.1| hypothetical protein KNAG_0F03990 [Kazachstania naganishii CBS
8797]
Length = 160
Score = 107 bits (267), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 50/75 (66%), Positives = 63/75 (84%), Gaps = 1/75 (1%)
Query: 9 ITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPD 68
T + +YERAR+LGTRALQI+M APV V+LEGETDPL+IA KEL +KIP++IRRYLPD
Sbjct: 86 TTPYMTKYERARILGTRALQISMNAPVFVDLEGETDPLKIATKELMEKKIPLVIRRYLPD 145
Query: 69 NSYEDWGIDELKIID 83
S+EDW ++EL I+D
Sbjct: 146 GSFEDWTVEEL-IVD 159
>gi|409083797|gb|EKM84154.1| hypothetical protein AGABI1DRAFT_31547 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 99
Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/72 (69%), Positives = 60/72 (83%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERAR+LGTRALQI+M APV+V L+GETD LQIA+KEL RKIP+IIRRYLP
Sbjct: 25 ITTPYLTKYERARILGTRALQISMNAPVLVPLDGETDALQIAIKELSQRKIPLIIRRYLP 84
Query: 68 DNSYEDWGIDEL 79
D S+EDW + EL
Sbjct: 85 DGSFEDWSVSEL 96
>gi|303322929|ref|XP_003071456.1| DNA-directed RNA polymerase subunit, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|240111158|gb|EER29311.1| DNA-directed RNA polymerase subunit, putative [Coccidioides
posadasii C735 delta SOWgp]
Length = 158
Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/72 (68%), Positives = 60/72 (83%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
T + +YERARVLGTRALQI+M AP++V+LEGETDPLQIA+KEL +KIP+I+RRYLP
Sbjct: 86 TTTPYMTKYERARVLGTRALQISMNAPILVDLEGETDPLQIALKELNQKKIPLIVRRYLP 145
Query: 68 DNSYEDWGIDEL 79
D YEDW +EL
Sbjct: 146 DGWYEDWTCEEL 157
>gi|407923999|gb|EKG17060.1| RNA polymerase subunit omega/K/RPABC2 [Macrophomina phaseolina MS6]
Length = 160
Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 48/72 (66%), Positives = 60/72 (83%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
T + +YERARVLGTRALQI+M AP +V+LEGETDPLQIA+KEL+ +KIP+++RRYLP
Sbjct: 88 TTTPYMTKYERARVLGTRALQISMNAPALVDLEGETDPLQIALKELREKKIPLVVRRYLP 147
Query: 68 DNSYEDWGIDEL 79
D YEDW +EL
Sbjct: 148 DGFYEDWTCEEL 159
>gi|307108763|gb|EFN57002.1| hypothetical protein CHLNCDRAFT_21734 [Chlorella variabilis]
Length = 116
Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/77 (67%), Positives = 63/77 (81%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YE+ARVLGTRALQI+M APVMVE+ ETDPL+IA KEL+ +KIP IIRRYLP
Sbjct: 40 ITTRYLTKYEKARVLGTRALQISMNAPVMVEVGTETDPLEIAYKELREKKIPFIIRRYLP 99
Query: 68 DNSYEDWGIDELKIIDR 84
DNS+EDW + EL I +R
Sbjct: 100 DNSFEDWSLAELIIPER 116
>gi|238587830|ref|XP_002391548.1| hypothetical protein MPER_09004 [Moniliophthora perniciosa FA553]
gi|215456356|gb|EEB92478.1| hypothetical protein MPER_09004 [Moniliophthora perniciosa FA553]
Length = 169
Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/72 (69%), Positives = 60/72 (83%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERAR+LGTRALQI+M APV+V L+GETD LQIA+KEL RKIP+IIRRYLP
Sbjct: 95 ITTPYLTKYERARILGTRALQISMNAPVLVPLDGETDALQIAIKELSQRKIPLIIRRYLP 154
Query: 68 DNSYEDWGIDEL 79
D S+EDW + EL
Sbjct: 155 DGSFEDWSVSEL 166
>gi|425773051|gb|EKV11426.1| DNA-directed RNA polymerase I, II, and III subunit Rpb6
[Penicillium digitatum PHI26]
gi|425782176|gb|EKV20101.1| DNA-directed RNA polymerase I, II, and III subunit Rpb6
[Penicillium digitatum Pd1]
Length = 153
Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/72 (70%), Positives = 59/72 (81%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
T + +YERARVLGTRALQI+M APV+V+LEGETDPLQIAM EL +KIP+IIRRYLP
Sbjct: 81 TTTPYLTKYERARVLGTRALQISMNAPVLVDLEGETDPLQIAMMELNQKKIPLIIRRYLP 140
Query: 68 DNSYEDWGIDEL 79
D YEDW +EL
Sbjct: 141 DGWYEDWTCEEL 152
>gi|320033471|gb|EFW15419.1| DNA-directed RNA polymerase I [Coccidioides posadasii str.
Silveira]
gi|392868331|gb|EJB11472.1| DNA-directed RNA polymerase I [Coccidioides immitis RS]
Length = 167
Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/72 (68%), Positives = 60/72 (83%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
T + +YERARVLGTRALQI+M AP++V+LEGETDPLQIA+KEL +KIP+I+RRYLP
Sbjct: 95 TTTPYMTKYERARVLGTRALQISMNAPILVDLEGETDPLQIALKELNQKKIPLIVRRYLP 154
Query: 68 DNSYEDWGIDEL 79
D YEDW +EL
Sbjct: 155 DGWYEDWTCEEL 166
>gi|226292518|gb|EEH47938.1| DNA-directed RNA polymerases I [Paracoccidioides brasiliensis Pb18]
Length = 165
Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/72 (68%), Positives = 60/72 (83%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
T + +YERARVLGTRALQI+M AP++V+LEGETDPLQIA+KEL +KIP+I+RRYLP
Sbjct: 93 TTTPYMTKYERARVLGTRALQISMNAPILVDLEGETDPLQIALKELAQKKIPLIVRRYLP 152
Query: 68 DNSYEDWGIDEL 79
D YEDW +EL
Sbjct: 153 DGWYEDWTCEEL 164
>gi|326426823|gb|EGD72393.1| DNA-directed RNA polymerase I [Salpingoeca sp. ATCC 50818]
Length = 115
Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/82 (67%), Positives = 67/82 (81%), Gaps = 6/82 (7%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
+ T + +YERARVLG RALQI+M AP+MVELEGETDPL+IA KEL A KIP+IIRRYLP
Sbjct: 33 VTTRYMTKYERARVLGARALQISMNAPLMVELEGETDPLRIAQKELLAGKIPMIIRRYLP 92
Query: 68 DN-----SYEDWGIDELKIIDR 84
D+ SYEDWG++EL I++R
Sbjct: 93 DHTPENPSYEDWGVNEL-IVER 113
>gi|225680818|gb|EEH19102.1| DNA-directed RNA polymerases I [Paracoccidioides brasiliensis Pb03]
Length = 165
Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/72 (68%), Positives = 60/72 (83%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
T + +YERARVLGTRALQI+M AP++V+LEGETDPLQIA+KEL +KIP+I+RRYLP
Sbjct: 93 TTTPYMTKYERARVLGTRALQISMNAPILVDLEGETDPLQIALKELAQKKIPLIVRRYLP 152
Query: 68 DNSYEDWGIDEL 79
D YEDW +EL
Sbjct: 153 DGWYEDWTCEEL 164
>gi|367050762|ref|XP_003655760.1| hypothetical protein THITE_2119818 [Thielavia terrestris NRRL 8126]
gi|347003024|gb|AEO69424.1| hypothetical protein THITE_2119818 [Thielavia terrestris NRRL 8126]
Length = 167
Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 48/72 (66%), Positives = 61/72 (84%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
T + +YE+AR+LGTRALQI+M APV+V+LEGETDPLQIA+KEL+ +KIP+I+RRYLP
Sbjct: 94 TTTPFMTKYEKARILGTRALQISMNAPVLVDLEGETDPLQIAIKELREKKIPLIVRRYLP 153
Query: 68 DNSYEDWGIDEL 79
D YEDW +EL
Sbjct: 154 DGYYEDWTCEEL 165
>gi|412988852|emb|CCO15443.1| DNA-directed RNA polymerases I [Bathycoccus prasinos]
Length = 150
Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 46/76 (60%), Positives = 62/76 (81%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
T + +YERAR+LGTRALQI+M APV+V+LEGETDPL IA KEL+ +++P +RR++P
Sbjct: 68 TTTPYMTKYERARILGTRALQISMNAPVLVQLEGETDPLDIANKELREKRVPFTVRRFMP 127
Query: 68 DNSYEDWGIDELKIID 83
D S+EDWG+DEL + D
Sbjct: 128 DGSWEDWGVDELIVED 143
>gi|406858817|gb|EKD11904.1| DNA-directed RNA polymerases I, II, and III [Marssonina brunnea f.
sp. 'multigermtubi' MB_m1]
Length = 167
Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 48/72 (66%), Positives = 61/72 (84%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
T + +YERAR+LGTRALQI+M APV+V+LEGETDPLQIA+KEL+ +KIP+I+RRY+P
Sbjct: 94 TTTPYMTKYERARILGTRALQISMNAPVLVDLEGETDPLQIAIKELREKKIPLIVRRYMP 153
Query: 68 DNSYEDWGIDEL 79
D YEDW +EL
Sbjct: 154 DGMYEDWTCEEL 165
>gi|367027080|ref|XP_003662824.1| hypothetical protein MYCTH_2138933 [Myceliophthora thermophila ATCC
42464]
gi|347010093|gb|AEO57579.1| hypothetical protein MYCTH_2138933 [Myceliophthora thermophila ATCC
42464]
Length = 159
Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 48/72 (66%), Positives = 61/72 (84%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
T + +YE+AR+LGTRALQI+M APV+V+LEGETDPLQIA+KEL+ +KIP+I+RRYLP
Sbjct: 86 TTTPFMTKYEKARILGTRALQISMNAPVLVDLEGETDPLQIAIKELREKKIPLIVRRYLP 145
Query: 68 DNSYEDWGIDEL 79
D YEDW +EL
Sbjct: 146 DGYYEDWTCEEL 157
>gi|119189661|ref|XP_001245437.1| hypothetical protein CIMG_04878 [Coccidioides immitis RS]
Length = 142
Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/72 (68%), Positives = 60/72 (83%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
T + +YERARVLGTRALQI+M AP++V+LEGETDPLQIA+KEL +KIP+I+RRYLP
Sbjct: 70 TTTPYMTKYERARVLGTRALQISMNAPILVDLEGETDPLQIALKELNQKKIPLIVRRYLP 129
Query: 68 DNSYEDWGIDEL 79
D YEDW +EL
Sbjct: 130 DGWYEDWTCEEL 141
>gi|325092943|gb|EGC46253.1| DNA-directed RNA polymerase I [Ajellomyces capsulatus H88]
Length = 165
Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/72 (68%), Positives = 60/72 (83%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
T + +YERARVLGTRALQI+M AP++V+LEGETDPLQIA+KEL +KIP+I+RRYLP
Sbjct: 93 TTTPYMTKYERARVLGTRALQISMNAPILVDLEGETDPLQIALKELAQKKIPLIVRRYLP 152
Query: 68 DNSYEDWGIDEL 79
D YEDW +EL
Sbjct: 153 DGWYEDWTCEEL 164
>gi|295672808|ref|XP_002796950.1| DNA-directed RNA polymerases I [Paracoccidioides sp. 'lutzii' Pb01]
gi|226282322|gb|EEH37888.1| DNA-directed RNA polymerases I [Paracoccidioides sp. 'lutzii' Pb01]
Length = 165
Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/72 (68%), Positives = 60/72 (83%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
T + +YERARVLGTRALQI+M AP++V+LEGETDPLQIA+KEL +KIP+I+RRYLP
Sbjct: 93 TTTPYMTKYERARVLGTRALQISMNAPILVDLEGETDPLQIALKELAQKKIPLIVRRYLP 152
Query: 68 DNSYEDWGIDEL 79
D YEDW +EL
Sbjct: 153 DGWYEDWTCEEL 164
>gi|426201144|gb|EKV51067.1| hypothetical protein AGABI2DRAFT_61363 [Agaricus bisporus var.
bisporus H97]
Length = 99
Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/72 (68%), Positives = 60/72 (83%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
+ T + +YERAR+LGTRALQI+M APV+V L+GETD LQIA+KEL RKIP+IIRRYLP
Sbjct: 25 VTTPYLTKYERARILGTRALQISMNAPVLVPLDGETDALQIAIKELSQRKIPLIIRRYLP 84
Query: 68 DNSYEDWGIDEL 79
D S+EDW + EL
Sbjct: 85 DGSFEDWSVSEL 96
>gi|378727457|gb|EHY53916.1| DNA-directed RNA Polymerase II subunit F [Exophiala dermatitidis
NIH/UT8656]
Length = 152
Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/71 (69%), Positives = 60/71 (84%)
Query: 9 ITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPD 68
T + +YERARVLGTRALQI+M APV+V+LEGETDPLQIA+KEL +KIP+++RRYLPD
Sbjct: 81 TTPYMTKYERARVLGTRALQISMNAPVLVDLEGETDPLQIAIKELNQKKIPLVVRRYLPD 140
Query: 69 NSYEDWGIDEL 79
YEDW +EL
Sbjct: 141 GWYEDWTCEEL 151
>gi|449298782|gb|EMC94797.1| hypothetical protein BAUCODRAFT_36057 [Baudoinia compniacensis UAMH
10762]
Length = 171
Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 47/72 (65%), Positives = 61/72 (84%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
T + +YERARVLGTRALQI+M APV+V++EGETDPLQIA+KEL+ +K+P+++RRYLP
Sbjct: 98 TTTPYMTKYERARVLGTRALQISMNAPVLVDVEGETDPLQIAIKELREKKVPLVVRRYLP 157
Query: 68 DNSYEDWGIDEL 79
D YEDW +EL
Sbjct: 158 DGWYEDWTCEEL 169
>gi|443918254|gb|ELU38777.1| RNA polymerase rpb6 domain-containing protein [Rhizoctonia solani
AG-1 IA]
Length = 149
Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 48/72 (66%), Positives = 61/72 (84%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERAR+LGTRALQI+M APV+V L+GE+DPLQIA+KEL +KIP++IRRYLP
Sbjct: 75 ITTRYLTKYERARILGTRALQISMNAPVLVPLDGESDPLQIAIKELAQKKIPLVIRRYLP 134
Query: 68 DNSYEDWGIDEL 79
D S+EDW + EL
Sbjct: 135 DGSFEDWSVSEL 146
>gi|261188394|ref|XP_002620612.1| DNA-directed RNA polymerase I [Ajellomyces dermatitidis SLH14081]
gi|239593212|gb|EEQ75793.1| DNA-directed RNA polymerase I [Ajellomyces dermatitidis SLH14081]
gi|239609354|gb|EEQ86341.1| DNA-directed RNA polymerase I [Ajellomyces dermatitidis ER-3]
Length = 162
Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/72 (68%), Positives = 60/72 (83%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
T + +YERARVLGTRALQI+M AP++V+LEGETDPLQIA+KEL +KIP+I+RRYLP
Sbjct: 90 TTTPYMTKYERARVLGTRALQISMNAPILVDLEGETDPLQIALKELAQKKIPLIVRRYLP 149
Query: 68 DNSYEDWGIDEL 79
D YEDW +EL
Sbjct: 150 DGWYEDWTCEEL 161
>gi|320587906|gb|EFX00381.1| DNA-directed RNA polymerase and 3 subunit rpb6 [Grosmannia
clavigera kw1407]
Length = 164
Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 47/71 (66%), Positives = 61/71 (85%)
Query: 9 ITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPD 68
T + +YE+AR+LGTRALQI+M APV+V+LEGETDPLQIA+KEL+ +K+P+I+RRYLPD
Sbjct: 92 TTPFLTKYEKARILGTRALQISMNAPVLVDLEGETDPLQIAIKELREKKVPLIVRRYLPD 151
Query: 69 NSYEDWGIDEL 79
YEDW +EL
Sbjct: 152 GFYEDWTCEEL 162
>gi|440636814|gb|ELR06733.1| hypothetical protein GMDG_00350 [Geomyces destructans 20631-21]
Length = 163
Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/72 (66%), Positives = 61/72 (84%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
T + +YERAR+LGTRALQI+M APV+V+LEGETDPLQIA+KEL+ +KIP+I+RRY+P
Sbjct: 90 TTTPYMTKYERARILGTRALQISMNAPVLVDLEGETDPLQIAIKELREKKIPLIVRRYMP 149
Query: 68 DNSYEDWGIDEL 79
D YEDW +EL
Sbjct: 150 DGWYEDWTCEEL 161
>gi|170084301|ref|XP_001873374.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650926|gb|EDR15166.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 86
Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/72 (68%), Positives = 60/72 (83%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
+ T + +YERAR+LGTRALQI+M APV+V L+GETD LQIA+KEL RKIP+IIRRYLP
Sbjct: 14 VTTPYLTKYERARILGTRALQISMNAPVLVPLDGETDALQIAIKELSQRKIPLIIRRYLP 73
Query: 68 DNSYEDWGIDEL 79
D S+EDW + EL
Sbjct: 74 DGSFEDWSVSEL 85
>gi|380487611|emb|CCF37926.1| RNA polymerase Rpb6 [Colletotrichum higginsianum]
Length = 153
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/72 (66%), Positives = 61/72 (84%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
T + +YERAR+LGTRALQI+M APV+V+LEGETDPLQIA+KEL+ +KIP+I+RRY+P
Sbjct: 80 TTTPYMTKYERARILGTRALQISMNAPVLVDLEGETDPLQIAIKELREKKIPLIVRRYMP 139
Query: 68 DNSYEDWGIDEL 79
D YEDW +EL
Sbjct: 140 DGYYEDWTCEEL 151
>gi|310793050|gb|EFQ28511.1| RNA polymerase Rpb6 [Glomerella graminicola M1.001]
Length = 152
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/72 (66%), Positives = 61/72 (84%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
T + +YERAR+LGTRALQI+M APV+V+LEGETDPLQIA+KEL+ +KIP+I+RRY+P
Sbjct: 79 TTTPYMTKYERARILGTRALQISMNAPVLVDLEGETDPLQIAIKELREKKIPLIVRRYMP 138
Query: 68 DNSYEDWGIDEL 79
D YEDW +EL
Sbjct: 139 DGYYEDWTCEEL 150
>gi|340518299|gb|EGR48540.1| predicted protein [Trichoderma reesei QM6a]
Length = 151
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/72 (66%), Positives = 61/72 (84%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
T + +YERAR+LGTRALQI+M APV+V+LEGETDPLQIA+KEL+ +KIP+I+RRY+P
Sbjct: 78 TTTPYMTKYERARILGTRALQISMNAPVLVDLEGETDPLQIAIKELREKKIPLIVRRYMP 137
Query: 68 DNSYEDWGIDEL 79
D YEDW +EL
Sbjct: 138 DGYYEDWTCEEL 149
>gi|390604614|gb|EIN14005.1| subunit common to RNA polymerase I, partial [Punctularia
strigosozonata HHB-11173 SS5]
Length = 144
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/72 (66%), Positives = 60/72 (83%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
+ T + +YERAR+LGTRALQI+M APV+V L+GETD LQIA+KEL RKIP+IIRR+LP
Sbjct: 70 VTTPYLTKYERARILGTRALQISMNAPVLVPLDGETDALQIAIKELSQRKIPLIIRRFLP 129
Query: 68 DNSYEDWGIDEL 79
D S+EDW + EL
Sbjct: 130 DGSFEDWSVSEL 141
>gi|313236536|emb|CBY11850.1| unnamed protein product [Oikopleura dioica]
Length = 114
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/66 (77%), Positives = 57/66 (86%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERAR+LGTRALQIAM APVMVEL GETDPL IA+KELK +KIPII+RRYLP
Sbjct: 48 ITTPFMTKYERARILGTRALQIAMNAPVMVELRGETDPLAIALKELKVKKIPIIVRRYLP 107
Query: 68 DNSYED 73
D SYED
Sbjct: 108 DGSYED 113
>gi|302406322|ref|XP_003000997.1| DNA-directed RNA polymerases I [Verticillium albo-atrum VaMs.102]
gi|261360255|gb|EEY22683.1| DNA-directed RNA polymerases I [Verticillium albo-atrum VaMs.102]
Length = 149
Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 47/72 (65%), Positives = 61/72 (84%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
T + +YE+AR+LGTRALQI+M APV+V+LEGETDPLQIA+KEL+ +KIP+I+RRY+P
Sbjct: 76 TTTPYMTKYEKARILGTRALQISMNAPVLVDLEGETDPLQIAIKELREKKIPLIVRRYMP 135
Query: 68 DNSYEDWGIDEL 79
D YEDW +EL
Sbjct: 136 DGYYEDWTCEEL 147
>gi|346971509|gb|EGY14961.1| DNA-directed RNA polymerases I [Verticillium dahliae VdLs.17]
Length = 149
Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 47/70 (67%), Positives = 61/70 (87%)
Query: 10 TIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDN 69
T + +YE+AR+LGTRALQI+M APV+V+LEGETDPLQIA+KEL+ +KIP+I+RRY+PD
Sbjct: 78 TPYMTKYEKARILGTRALQISMNAPVLVDLEGETDPLQIAIKELREKKIPLIVRRYMPDG 137
Query: 70 SYEDWGIDEL 79
YEDW +EL
Sbjct: 138 YYEDWTCEEL 147
>gi|303281806|ref|XP_003060195.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226458850|gb|EEH56147.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 84
Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 48/74 (64%), Positives = 62/74 (83%)
Query: 10 TIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDN 69
T + +YERAR+LGTRALQI+M APV+V+L+GETDPL+IA KEL+ ++IP +RRYLPD
Sbjct: 4 TPYMTKYERARILGTRALQISMNAPVLVQLDGETDPLEIAGKELREKRIPFTVRRYLPDG 63
Query: 70 SYEDWGIDELKIID 83
S+EDW +DEL I D
Sbjct: 64 SFEDWSVDELIIED 77
>gi|453088806|gb|EMF16846.1| RNA polymerase Rpb6 [Mycosphaerella populorum SO2202]
Length = 126
Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 47/72 (65%), Positives = 60/72 (83%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
T + +YERARVLGTRALQI+M APV+V++E ETDPLQIA+KEL+ +KIP+++RRYLP
Sbjct: 54 TTTPYMTKYERARVLGTRALQISMGAPVLVDVESETDPLQIALKELREKKIPLVVRRYLP 113
Query: 68 DNSYEDWGIDEL 79
D YEDW +EL
Sbjct: 114 DGYYEDWTCEEL 125
>gi|452847500|gb|EME49432.1| hypothetical protein DOTSEDRAFT_68260 [Dothistroma septosporum
NZE10]
Length = 165
Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 47/72 (65%), Positives = 60/72 (83%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
T + +YERARVLGTRALQI+M APV+V++E ETDPLQIA+KEL+ +KIP+++RRYLP
Sbjct: 93 TTTPYMTKYERARVLGTRALQISMGAPVLVDVESETDPLQIALKELREKKIPLVVRRYLP 152
Query: 68 DNSYEDWGIDEL 79
D YEDW +EL
Sbjct: 153 DGYYEDWTCEEL 164
>gi|164428772|ref|XP_001728485.1| DNA-directed RNA polymerases I [Neurospora crassa OR74A]
gi|157072273|gb|EDO65394.1| DNA-directed RNA polymerases I [Neurospora crassa OR74A]
Length = 160
Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 47/71 (66%), Positives = 61/71 (85%)
Query: 9 ITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPD 68
T + +YE+AR+LGTRALQI+M APV+V+LEGETDPLQIA+KEL+ +KIP+I+RRY+PD
Sbjct: 88 TTPYMTKYEKARILGTRALQISMNAPVLVDLEGETDPLQIAIKELREKKIPLIVRRYMPD 147
Query: 69 NSYEDWGIDEL 79
YEDW +EL
Sbjct: 148 GYYEDWTCEEL 158
>gi|336469566|gb|EGO57728.1| DNA-directed RNA polymerases I [Neurospora tetrasperma FGSC 2508]
gi|350290786|gb|EGZ72000.1| DNA-directed RNA polymerases I [Neurospora tetrasperma FGSC 2509]
Length = 160
Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 47/71 (66%), Positives = 61/71 (85%)
Query: 9 ITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPD 68
T + +YE+AR+LGTRALQI+M APV+V+LEGETDPLQIA+KEL+ +KIP+I+RRY+PD
Sbjct: 88 TTPYMTKYEKARILGTRALQISMNAPVLVDLEGETDPLQIAIKELREKKIPLIVRRYMPD 147
Query: 69 NSYEDWGIDEL 79
YEDW +EL
Sbjct: 148 GYYEDWTCEEL 158
>gi|328767393|gb|EGF77443.1| hypothetical protein BATDEDRAFT_91671 [Batrachochytrium
dendrobatidis JAM81]
Length = 148
Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 62/72 (86%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
+ T + +YE+AR+LGTRALQI+M APVMV+L GE+DPLQIAMKEL+ RK+P+++RR++P
Sbjct: 73 MTTPYMTKYEKARILGTRALQISMNAPVMVDLTGESDPLQIAMKELRERKVPLMVRRFMP 132
Query: 68 DNSYEDWGIDEL 79
D S+EDW + EL
Sbjct: 133 DGSWEDWSVQEL 144
>gi|389751166|gb|EIM92239.1| RNA polymerase Rpb6, partial [Stereum hirsutum FP-91666 SS1]
Length = 84
Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 48/72 (66%), Positives = 60/72 (83%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
+ T + +YERAR+LGTRALQI+M AP++V L+GETD LQIA+KEL RKIP+IIRRYLP
Sbjct: 10 VTTPYLTKYERARILGTRALQISMNAPILVPLDGETDALQIAIKELSQRKIPLIIRRYLP 69
Query: 68 DNSYEDWGIDEL 79
D S+EDW + EL
Sbjct: 70 DGSFEDWSVSEL 81
>gi|389630464|ref|XP_003712885.1| DNA-directed RNA polymerase I [Magnaporthe oryzae 70-15]
gi|351645217|gb|EHA53078.1| DNA-directed RNA polymerase I [Magnaporthe oryzae 70-15]
gi|440476364|gb|ELQ44972.1| DNA-directed RNA polymerases I [Magnaporthe oryzae Y34]
gi|440490438|gb|ELQ69995.1| DNA-directed RNA polymerases I [Magnaporthe oryzae P131]
Length = 151
Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 48/70 (68%), Positives = 60/70 (85%)
Query: 10 TIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDN 69
T + +YE+AR+LGTRALQI+M APV+V+LEGETDPLQIA+KEL +KIP+IIRRY+PD
Sbjct: 80 TPFMTKYEKARILGTRALQISMNAPVLVDLEGETDPLQIAIKELAEKKIPLIIRRYMPDG 139
Query: 70 SYEDWGIDEL 79
YEDW +EL
Sbjct: 140 YYEDWTCEEL 149
>gi|342872060|gb|EGU74463.1| hypothetical protein FOXB_15030 [Fusarium oxysporum Fo5176]
Length = 158
Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 47/70 (67%), Positives = 61/70 (87%)
Query: 10 TIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDN 69
T + +YERAR+LGTRALQI+M APV+V+LEGETDPLQIA+KE++ +KIP+I+RRY+PD
Sbjct: 83 TPYMTKYERARILGTRALQISMNAPVLVDLEGETDPLQIAIKEMREKKIPLIVRRYMPDG 142
Query: 70 SYEDWGIDEL 79
YEDW +EL
Sbjct: 143 YYEDWTCEEL 152
>gi|402219913|gb|EJT99985.1| RNA polymerase Rpb6 [Dacryopinax sp. DJM-731 SS1]
Length = 121
Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 47/74 (63%), Positives = 60/74 (81%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERAR+LGTRALQ++M AP +V EGETDPLQIA+KEL +KIP++IRRYLP
Sbjct: 47 ITTPYMTKYERARILGTRALQLSMNAPALVNTEGETDPLQIAIKELAEKKIPLVIRRYLP 106
Query: 68 DNSYEDWGIDELKI 81
D S+EDW + EL+
Sbjct: 107 DGSFEDWKVTELET 120
>gi|429859788|gb|ELA34554.1| DNA-directed RNA polymerases i [Colletotrichum gloeosporioides Nara
gc5]
Length = 153
Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 47/72 (65%), Positives = 61/72 (84%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
T + +YERAR+LGTRALQI+M APV+V+LEGETDPLQIA+KE++ +KIP+I+RRY+P
Sbjct: 80 TTTPYMTKYERARILGTRALQISMNAPVLVDLEGETDPLQIAIKEMREKKIPLIVRRYMP 139
Query: 68 DNSYEDWGIDEL 79
D YEDW +EL
Sbjct: 140 DGYYEDWTCEEL 151
>gi|323454986|gb|EGB10855.1| hypothetical protein AURANDRAFT_8009, partial [Aureococcus
anophagefferens]
Length = 77
Score = 105 bits (262), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 53/76 (69%), Positives = 64/76 (84%), Gaps = 1/76 (1%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
+ T + +YE+ARVLGTRALQI+M APVMV++ GETDPL+IA KEL+ RKIP+IIRRYLP
Sbjct: 3 VTTRYMTKYEKARVLGTRALQISMNAPVMVDVAGETDPLKIANKELRERKIPLIIRRYLP 62
Query: 68 DNSYEDWGIDELKIID 83
D SYEDW I +L IID
Sbjct: 63 DGSYEDWPIRDL-IID 77
>gi|408398977|gb|EKJ78102.1| hypothetical protein FPSE_01563 [Fusarium pseudograminearum CS3096]
Length = 201
Score = 105 bits (262), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 47/72 (65%), Positives = 61/72 (84%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
T + +YERAR+LGTRALQI+M APV+V+LEGETDPLQIA+KE++ +KIP+I+RRY+P
Sbjct: 78 TTTPYMTKYERARILGTRALQISMNAPVLVDLEGETDPLQIAIKEMREKKIPLIVRRYMP 137
Query: 68 DNSYEDWGIDEL 79
D YEDW +EL
Sbjct: 138 DGYYEDWTCEEL 149
>gi|336273668|ref|XP_003351588.1| hypothetical protein SMAC_00129 [Sordaria macrospora k-hell]
gi|380095868|emb|CCC05914.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 160
Score = 105 bits (262), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 47/71 (66%), Positives = 61/71 (85%)
Query: 9 ITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPD 68
T + +YE+AR+LGTRALQI+M APV+V+LEGETDPLQIA+KEL+ +KIP+I+RRY+PD
Sbjct: 88 TTPYMTKYEKARILGTRALQISMNAPVLVDLEGETDPLQIAIKELREKKIPLIVRRYMPD 147
Query: 69 NSYEDWGIDEL 79
YEDW +EL
Sbjct: 148 GFYEDWTCEEL 158
>gi|402219908|gb|EJT99980.1| RNA polymerase Rpb6, partial [Dacryopinax sp. DJM-731 SS1]
Length = 82
Score = 105 bits (261), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 47/73 (64%), Positives = 60/73 (82%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERAR+LGTRALQ++M AP +V EGETDPLQIA+KEL +KIP++IRRYLP
Sbjct: 8 ITTPYMTKYERARILGTRALQLSMNAPALVNTEGETDPLQIAIKELAEKKIPLVIRRYLP 67
Query: 68 DNSYEDWGIDELK 80
D S+EDW + EL+
Sbjct: 68 DGSFEDWKVTELE 80
>gi|402077218|gb|EJT72567.1| DNA-directed RNA polymerase I [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 155
Score = 105 bits (261), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 48/72 (66%), Positives = 60/72 (83%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
T + +YE+AR+LGTRALQI+M APV+V+LEGETDPLQIA+KEL +KIP+IIRRY+P
Sbjct: 82 TTTPFMTKYEKARILGTRALQISMNAPVLVDLEGETDPLQIAIKELAEKKIPLIIRRYMP 141
Query: 68 DNSYEDWGIDEL 79
D YEDW +EL
Sbjct: 142 DGFYEDWTCEEL 153
>gi|398412102|ref|XP_003857381.1| hypothetical protein MYCGRDRAFT_33005, partial [Zymoseptoria
tritici IPO323]
gi|339477266|gb|EGP92357.1| hypothetical protein MYCGRDRAFT_33005 [Zymoseptoria tritici IPO323]
Length = 108
Score = 104 bits (260), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 47/70 (67%), Positives = 60/70 (85%)
Query: 10 TIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDN 69
T + +YERARVLGTRALQI+M APV+V++E ETDPLQIA+KEL+ +KIP+++RRYLPD
Sbjct: 38 TPYMTKYERARVLGTRALQISMGAPVLVDVESETDPLQIALKELREKKIPLVVRRYLPDG 97
Query: 70 SYEDWGIDEL 79
YEDW +EL
Sbjct: 98 FYEDWTCEEL 107
>gi|452989682|gb|EME89437.1| hypothetical protein MYCFIDRAFT_27771, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 124
Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 46/72 (63%), Positives = 60/72 (83%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
T + +YERARVLGTRALQI++ APV+V++E ETDPLQIA+KEL+ +KIP+++RRYLP
Sbjct: 52 TTTPYMTKYERARVLGTRALQISLGAPVLVDVESETDPLQIALKELREKKIPLVVRRYLP 111
Query: 68 DNSYEDWGIDEL 79
D YEDW +EL
Sbjct: 112 DGYYEDWTCEEL 123
>gi|156051800|ref|XP_001591861.1| hypothetical protein SS1G_07307 [Sclerotinia sclerotiorum 1980]
gi|154705085|gb|EDO04824.1| hypothetical protein SS1G_07307 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 165
Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 46/72 (63%), Positives = 60/72 (83%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
T + +YERAR+LGTRALQI+M AP++V+ EGETDPLQIA+KEL+ +KIP+I+RRY+P
Sbjct: 92 TTTPYMTKYERARILGTRALQISMNAPILVDQEGETDPLQIAIKELRDKKIPLIVRRYMP 151
Query: 68 DNSYEDWGIDEL 79
D YEDW +EL
Sbjct: 152 DGWYEDWTCEEL 163
>gi|440296096|gb|ELP88937.1| DNA-directed RNA polymerase I, II, and III subunit RPABC2, putative
[Entamoeba invadens IP1]
Length = 125
Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/74 (70%), Positives = 59/74 (79%), Gaps = 1/74 (1%)
Query: 10 TIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDN 69
T + +YE+ARVLGTRALQI+M APV V L G TDPLQIAM+ELK +KIP IIRR LP+
Sbjct: 53 TKFMTKYEKARVLGTRALQISMNAPVFVNLNGMTDPLQIAMEELKEKKIPFIIRRRLPNG 112
Query: 70 SYEDWGIDELKIID 83
SYEDW I EL IID
Sbjct: 113 SYEDWKISEL-IID 125
>gi|164656523|ref|XP_001729389.1| hypothetical protein MGL_3424 [Malassezia globosa CBS 7966]
gi|159103280|gb|EDP42175.1| hypothetical protein MGL_3424 [Malassezia globosa CBS 7966]
Length = 146
Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 47/76 (61%), Positives = 60/76 (78%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YE+AR+LGTRALQI+M APV+V EGE DPL IA KEL A+KIP+++RRYLP
Sbjct: 71 ITTPYMTKYEKARILGTRALQISMNAPVLVPTEGEMDPLAIAQKELLAKKIPLLVRRYLP 130
Query: 68 DNSYEDWGIDELKIID 83
D ++EDW + EL I D
Sbjct: 131 DGTFEDWSVSELIITD 146
>gi|154315392|ref|XP_001557019.1| DNA-directed RNA polymerases I, II, and III [Botryotinia fuckeliana
B05.10]
gi|347839609|emb|CCD54181.1| similar to DNA-directed RNA polymerase I [Botryotinia fuckeliana]
Length = 163
Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 46/72 (63%), Positives = 60/72 (83%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
T + +YERAR+LGTRALQI+M AP++V+ EGETDPLQIA+KEL+ +KIP+I+RRY+P
Sbjct: 90 TTTPYMTKYERARILGTRALQISMNAPILVDQEGETDPLQIAIKELRDKKIPLIVRRYMP 149
Query: 68 DNSYEDWGIDEL 79
D YEDW +EL
Sbjct: 150 DGWYEDWTCEEL 161
>gi|345564745|gb|EGX47705.1| hypothetical protein AOL_s00083g213 [Arthrobotrys oligospora ATCC
24927]
Length = 170
Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 59/72 (81%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
T + +YERAR+LGTRALQI+M APV+V+ EG+TDPL+IA+KEL +KIP+++RRYLP
Sbjct: 98 TTTPYMTKYERARLLGTRALQISMNAPVLVDTEGQTDPLKIALKELNEKKIPLVVRRYLP 157
Query: 68 DNSYEDWGIDEL 79
D YEDW +EL
Sbjct: 158 DGYYEDWTCEEL 169
>gi|296414634|ref|XP_002837003.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295632851|emb|CAZ81194.1| unnamed protein product [Tuber melanosporum]
Length = 156
Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/72 (65%), Positives = 58/72 (80%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
T + +YERARVLGTRALQI+M APV+V+ GETDPL IA+KEL+ +KIP+++RRYLP
Sbjct: 84 TTTPYLTKYERARVLGTRALQISMNAPVLVDTGGETDPLLIALKELQEKKIPLVVRRYLP 143
Query: 68 DNSYEDWGIDEL 79
D YEDW DEL
Sbjct: 144 DGYYEDWTCDEL 155
>gi|341888878|gb|EGT44813.1| hypothetical protein CAEBREN_14268 [Caenorhabditis brenneri]
Length = 136
Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/82 (70%), Positives = 67/82 (81%)
Query: 2 VFSPSFIITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPII 61
V + + T + +YERARVLGTRALQIAM APVMVELEGETDPL+IA KELK R+IPII
Sbjct: 54 VPASEHVTTPFMTKYERARVLGTRALQIAMGAPVMVELEGETDPLEIARKELKQRRIPII 113
Query: 62 IRRYLPDNSYEDWGIDELKIID 83
IRRYLPD SYEDW D+L++ D
Sbjct: 114 IRRYLPDGSYEDWSTDQLQLAD 135
>gi|340053373|emb|CCC47662.1| putative DNA-directed RNA polymerase subunit [Trypanosoma vivax
Y486]
Length = 141
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 49/70 (70%), Positives = 58/70 (82%)
Query: 12 VIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSY 71
V+ +YERARVLGTRALQI+M APV+V LEGETDPL IA KEL+ IP+I+RR LPDN+Y
Sbjct: 59 VLTKYERARVLGTRALQISMNAPVLVALEGETDPLTIAQKELREGVIPLIVRRVLPDNTY 118
Query: 72 EDWGIDELKI 81
EDW I EL +
Sbjct: 119 EDWRICELDV 128
>gi|358060676|dbj|GAA93615.1| hypothetical protein E5Q_00259 [Mixia osmundae IAM 14324]
Length = 147
Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 47/67 (70%), Positives = 56/67 (83%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YE+ARVLGTRALQI+M APV+V LE ETDPL+IAMKEL KIP+I+RR+LP
Sbjct: 68 ITTPYMTKYEKARVLGTRALQISMNAPVLVTLENETDPLEIAMKELAQGKIPLIVRRFLP 127
Query: 68 DNSYEDW 74
D SYEDW
Sbjct: 128 DGSYEDW 134
>gi|261327674|emb|CBH10651.1| DNA-directed RNA polymerase subunit, putative [Trypanosoma brucei
gambiense DAL972]
Length = 144
Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 49/70 (70%), Positives = 58/70 (82%)
Query: 12 VIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSY 71
V+ +YERAR+LGTRALQI+M APV+V LEGETDPL IA KEL+ IP+IIRR LPDN+Y
Sbjct: 62 VLTKYERARILGTRALQISMNAPVLVALEGETDPLTIAQKELREGVIPLIIRRVLPDNTY 121
Query: 72 EDWGIDELKI 81
EDW I EL +
Sbjct: 122 EDWRICELDV 131
>gi|72388150|ref|XP_844499.1| DNA-directed RNA polymerase subunit [Trypanosoma brucei TREU927]
gi|72388154|ref|XP_844501.1| DNA-directed RNA polymerase subunit [Trypanosoma brucei TREU927]
gi|62358750|gb|AAX79204.1| DNA-directed RNA polymerase subunit, putative [Trypanosoma brucei]
gi|62358752|gb|AAX79206.1| DNA-directed RNA polymerase subunit, putative [Trypanosoma brucei]
gi|70801032|gb|AAZ10940.1| DNA-directed RNA polymerase subunit, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
gi|70801034|gb|AAZ10942.1| DNA-directed RNA polymerase subunit, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
gi|90954541|emb|CAJ44465.1| RNA polymerase subunit 2RPB6 [Trypanosoma brucei brucei]
gi|261327672|emb|CBH10649.1| DNA-directed RNA polymerase subunit, putative [Trypanosoma brucei
gambiense DAL972]
Length = 144
Score = 101 bits (251), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 49/70 (70%), Positives = 58/70 (82%)
Query: 12 VIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSY 71
V+ +YERAR+LGTRALQI+M APV+V LEGETDPL IA KEL+ IP+IIRR LPDN+Y
Sbjct: 62 VLTKYERARILGTRALQISMNAPVLVALEGETDPLTIAQKELREGVIPLIIRRVLPDNTY 121
Query: 72 EDWGIDELKI 81
EDW I EL +
Sbjct: 122 EDWRICELDV 131
>gi|449016320|dbj|BAM79722.1| RNA polymerase I, II, III common subunit [Cyanidioschyzon merolae
strain 10D]
Length = 166
Score = 101 bits (251), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 61/72 (84%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
+ T + +YERARVLG RALQI++ APV+V+LEGE+DPL IA KEL+A+KIP+ IRR+LP
Sbjct: 92 VTTPFLTKYERARVLGARALQISLGAPVLVDLEGESDPLLIAEKELRAKKIPLKIRRHLP 151
Query: 68 DNSYEDWGIDEL 79
+ +YEDW ++EL
Sbjct: 152 NGAYEDWSVNEL 163
>gi|384493039|gb|EIE83530.1| hypothetical protein RO3G_08235 [Rhizopus delemar RA 99-880]
Length = 98
Score = 100 bits (250), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 45/78 (57%), Positives = 65/78 (83%), Gaps = 2/78 (2%)
Query: 4 SPSFI--ITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPII 61
SP+ + T + +YE+AR+LGTRALQI++ APVMVEL+GE+D L IAMKEL+ +K+P+I
Sbjct: 18 SPNKVRQTTPYMTKYEKARILGTRALQISLNAPVMVELDGESDALVIAMKELREKKVPLI 77
Query: 62 IRRYLPDNSYEDWGIDEL 79
+RR+LPDN++EDW + +L
Sbjct: 78 VRRFLPDNTFEDWDVKDL 95
>gi|343476703|emb|CCD12275.1| hypothetical protein, unlikely [Trypanosoma congolense IL3000]
gi|343476704|emb|CCD12276.1| hypothetical protein, unlikely [Trypanosoma congolense IL3000]
Length = 144
Score = 100 bits (250), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 49/74 (66%), Positives = 60/74 (81%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
+ + V+ +YERAR+LGTRALQI+M APV+V LEGETDPL IA KEL+ IP+IIRR LP
Sbjct: 58 VTSPVLTKYERARILGTRALQISMNAPVLVALEGETDPLIIAQKELREGVIPLIIRRVLP 117
Query: 68 DNSYEDWGIDELKI 81
DN+YEDW I EL +
Sbjct: 118 DNTYEDWRICELDV 131
>gi|71407638|ref|XP_806275.1| DNA-directed RNA polymerase subunit [Trypanosoma cruzi strain CL
Brener]
gi|71423247|ref|XP_812392.1| DNA-directed RNA polymerase subunit [Trypanosoma cruzi strain CL
Brener]
gi|71423251|ref|XP_812394.1| DNA-directed RNA polymerase subunit [Trypanosoma cruzi strain CL
Brener]
gi|70869970|gb|EAN84424.1| DNA-directed RNA polymerase subunit, putative [Trypanosoma cruzi]
gi|70877167|gb|EAN90541.1| DNA-directed RNA polymerase subunit, putative [Trypanosoma cruzi]
gi|70877169|gb|EAN90543.1| DNA-directed RNA polymerase subunit, putative [Trypanosoma cruzi]
Length = 144
Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/70 (70%), Positives = 58/70 (82%)
Query: 12 VIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSY 71
V+ +YERAR+LGTRALQI+M APV+V LEGETDPL IA KEL+ IP+I+RR LPDN+Y
Sbjct: 62 VLTKYERARILGTRALQISMNAPVLVALEGETDPLIIAQKELREGVIPLIVRRVLPDNTY 121
Query: 72 EDWGIDELKI 81
EDW I EL I
Sbjct: 122 EDWRICELDI 131
>gi|71400730|ref|XP_803144.1| DNA-directed RNA polymerase subunit [Trypanosoma cruzi strain CL
Brener]
gi|71411599|ref|XP_808042.1| DNA-directed RNA polymerase subunit [Trypanosoma cruzi strain CL
Brener]
gi|71411605|ref|XP_808045.1| DNA-directed RNA polymerase subunit [Trypanosoma cruzi strain CL
Brener]
gi|71411609|ref|XP_808047.1| DNA-directed RNA polymerase subunit [Trypanosoma cruzi strain CL
Brener]
gi|70865825|gb|EAN81698.1| DNA-directed RNA polymerase subunit, putative [Trypanosoma cruzi]
gi|70872164|gb|EAN86191.1| DNA-directed RNA polymerase subunit, putative [Trypanosoma cruzi]
gi|70872167|gb|EAN86194.1| DNA-directed RNA polymerase subunit, putative [Trypanosoma cruzi]
gi|70872169|gb|EAN86196.1| DNA-directed RNA polymerase subunit, putative [Trypanosoma cruzi]
Length = 144
Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/70 (70%), Positives = 58/70 (82%)
Query: 12 VIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSY 71
V+ +YERAR+LGTRALQI+M APV+V LEGETDPL IA KEL+ IP+I+RR LPDN+Y
Sbjct: 62 VLTKYERARILGTRALQISMNAPVLVALEGETDPLIIAQKELREGVIPLIVRRVLPDNTY 121
Query: 72 EDWGIDELKI 81
EDW I EL I
Sbjct: 122 EDWRICELDI 131
>gi|388580341|gb|EIM20656.1| RNA polymerase Rpb6 [Wallemia sebi CBS 633.66]
Length = 90
Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 60/73 (82%), Gaps = 1/73 (1%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELE-GETDPLQIAMKELKARKIPIIIRRYL 66
+ T + +YERAR+LGTRALQI+M APV+V +E GE+DPLQIA+KEL + K+P+I+RRYL
Sbjct: 15 VTTPYMTKYERARILGTRALQISMNAPVLVPIEVGESDPLQIAIKELSSNKVPLIVRRYL 74
Query: 67 PDNSYEDWGIDEL 79
PD S+EDW EL
Sbjct: 75 PDGSFEDWKCQEL 87
>gi|160331075|ref|XP_001712245.1| rpabc6 [Hemiselmis andersenii]
gi|159765692|gb|ABW97920.1| rpabc6 [Hemiselmis andersenii]
Length = 137
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 43/68 (63%), Positives = 56/68 (82%)
Query: 12 VIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSY 71
+ +YE+AR+LG RALQI+M AP+M+E+EGETD L IA KEL RKIPI +RRYLP+ ++
Sbjct: 67 FLTKYEKARILGARALQISMGAPLMIEIEGETDALDIAAKELLKRKIPITLRRYLPNGTF 126
Query: 72 EDWGIDEL 79
EDW +DEL
Sbjct: 127 EDWDLDEL 134
>gi|308509118|ref|XP_003116742.1| CRE-RPB-6 protein [Caenorhabditis remanei]
gi|308241656|gb|EFO85608.1| CRE-RPB-6 protein [Caenorhabditis remanei]
Length = 137
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/82 (69%), Positives = 67/82 (81%)
Query: 2 VFSPSFIITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPII 61
V + + T + +YERARVLGTRALQIAM APVMVELEGETDPL+IA KELK R+IPII
Sbjct: 55 VPTSEHVTTPFMTKYERARVLGTRALQIAMGAPVMVELEGETDPLEIARKELKQRRIPII 114
Query: 62 IRRYLPDNSYEDWGIDELKIID 83
IRRYLPD SYEDW ++L++ D
Sbjct: 115 IRRYLPDGSYEDWPTEQLQLAD 136
>gi|209879453|ref|XP_002141167.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2
[Cryptosporidium muris RN66]
gi|209556773|gb|EEA06818.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2,
putative [Cryptosporidium muris RN66]
Length = 132
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/72 (65%), Positives = 59/72 (81%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + ++E+AR++GTRALQI+M APV + L+GETDPL IA KEL A+KIP IIRRYLP
Sbjct: 58 ITTPYMTKFEKARIIGTRALQISMNAPVAIPLDGETDPLIIAEKELYAKKIPFIIRRYLP 117
Query: 68 DNSYEDWGIDEL 79
+ +YEDW IDEL
Sbjct: 118 NGNYEDWKIDEL 129
>gi|169595038|ref|XP_001790943.1| hypothetical protein SNOG_00252 [Phaeosphaeria nodorum SN15]
gi|111070627|gb|EAT91747.1| hypothetical protein SNOG_00252 [Phaeosphaeria nodorum SN15]
Length = 161
Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 45/70 (64%), Positives = 58/70 (82%)
Query: 10 TIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDN 69
T + +YERARVLGTRALQI+ APV++++EG TDPLQIA KEL+ +KIP+++RRYLPD
Sbjct: 90 TPYMTKYERARVLGTRALQISGNAPVLIDVEGMTDPLQIAAKELQEKKIPLVVRRYLPDG 149
Query: 70 SYEDWGIDEL 79
YEDW +EL
Sbjct: 150 FYEDWTCEEL 159
>gi|294900079|ref|XP_002776889.1| DNA-directed RNA polymerase subunit, putative [Perkinsus marinus
ATCC 50983]
gi|239884090|gb|EER08705.1| DNA-directed RNA polymerase subunit, putative [Perkinsus marinus
ATCC 50983]
Length = 138
Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 44/67 (65%), Positives = 57/67 (85%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYE 72
+ +YERAR++GTRALQI+M APVMV+ EGETDP+ IA KEL A+ IP I+RR+LPD +YE
Sbjct: 68 MTKYERARIIGTRALQISMNAPVMVDTEGETDPMAIAEKELVAKVIPFIVRRFLPDGTYE 127
Query: 73 DWGIDEL 79
DW ++EL
Sbjct: 128 DWKVEEL 134
>gi|396469030|ref|XP_003838317.1| hypothetical protein LEMA_P118410.1 [Leptosphaeria maculans JN3]
gi|312214884|emb|CBX94838.1| hypothetical protein LEMA_P118410.1 [Leptosphaeria maculans JN3]
Length = 175
Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 58/72 (80%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
T + +YERARVLGTRALQI+ APV++++EG TDPLQIA KEL+ +KIP+++RRYLP
Sbjct: 102 TTTPYMTKYERARVLGTRALQISGNAPVLIDVEGMTDPLQIAAKELQEKKIPLVVRRYLP 161
Query: 68 DNSYEDWGIDEL 79
D YEDW +EL
Sbjct: 162 DGFYEDWTCEEL 173
>gi|66363316|ref|XP_628624.1| DNA-directed RNA polymerase subunit [Cryptosporidium parvum Iowa
II]
gi|67621068|ref|XP_667745.1| DNA-directed RNA polymerase IIa [Cryptosporidium hominis TU502]
gi|46229627|gb|EAK90445.1| DNA-directed RNA polymerase subunit [Cryptosporidium parvum Iowa
II]
gi|54658913|gb|EAL37521.1| DNA-directed RNA polymerase IIa [Cryptosporidium hominis]
Length = 129
Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 58/72 (80%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + ++E+AR++GTRALQI+M APV + L+GETDPL IA KEL +KIP +IRRYLP
Sbjct: 55 ITTPYMTKFEKARIIGTRALQISMNAPVAIPLDGETDPLLIAEKELYTKKIPFVIRRYLP 114
Query: 68 DNSYEDWGIDEL 79
+ +YEDW IDEL
Sbjct: 115 NGNYEDWKIDEL 126
>gi|300120817|emb|CBK21059.2| unnamed protein product [Blastocystis hominis]
Length = 82
Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 43/74 (58%), Positives = 59/74 (79%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
+ T + +YERAR+LGTRALQ++M AP MVE+ G+TD LQIA++EL+ +KIP+IIRR+LP
Sbjct: 8 VTTPYLTKYERARILGTRALQLSMNAPPMVEVNGQTDTLQIALEELRQKKIPLIIRRFLP 67
Query: 68 DNSYEDWGIDELKI 81
+EDW +DEL
Sbjct: 68 SGKFEDWRLDELNF 81
>gi|330923427|ref|XP_003300236.1| hypothetical protein PTT_11419 [Pyrenophora teres f. teres 0-1]
gi|311325727|gb|EFQ91661.1| hypothetical protein PTT_11419 [Pyrenophora teres f. teres 0-1]
Length = 163
Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 44/72 (61%), Positives = 58/72 (80%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
T + +YE+ARVLGTRALQI+ APV++++EG TDPLQIA KEL+ +KIP+++RRYLP
Sbjct: 90 TTTPYMTKYEKARVLGTRALQISGNAPVLIDVEGMTDPLQIAAKELQEKKIPLVVRRYLP 149
Query: 68 DNSYEDWGIDEL 79
D YEDW +EL
Sbjct: 150 DGFYEDWTCEEL 161
>gi|189201986|ref|XP_001937329.1| DNA-directed RNA polymerases I [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187984428|gb|EDU49916.1| DNA-directed RNA polymerases I [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 163
Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 44/72 (61%), Positives = 58/72 (80%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
T + +YE+ARVLGTRALQI+ APV++++EG TDPLQIA KEL+ +KIP+++RRYLP
Sbjct: 90 TTTPYMTKYEKARVLGTRALQISGNAPVLIDVEGMTDPLQIAAKELQEKKIPLVVRRYLP 149
Query: 68 DNSYEDWGIDEL 79
D YEDW +EL
Sbjct: 150 DGFYEDWTCEEL 161
>gi|451997265|gb|EMD89730.1| hypothetical protein COCHEDRAFT_1105445 [Cochliobolus
heterostrophus C5]
Length = 125
Score = 98.2 bits (243), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 44/70 (62%), Positives = 58/70 (82%)
Query: 10 TIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDN 69
T + +YE+ARVLGTRALQI+ APV++++EG TDPLQIA KEL+ +KIP+++RRYLPD
Sbjct: 54 TPYMTKYEKARVLGTRALQISGNAPVLIDVEGMTDPLQIAAKELQEKKIPLVVRRYLPDG 113
Query: 70 SYEDWGIDEL 79
YEDW +EL
Sbjct: 114 FYEDWTCEEL 123
>gi|451852409|gb|EMD65704.1| hypothetical protein COCSADRAFT_87368 [Cochliobolus sativus ND90Pr]
Length = 124
Score = 98.2 bits (243), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 44/70 (62%), Positives = 58/70 (82%)
Query: 10 TIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDN 69
T + +YE+ARVLGTRALQI+ APV++++EG TDPLQIA KEL+ +KIP+++RRYLPD
Sbjct: 53 TPYMTKYEKARVLGTRALQISGNAPVLIDVEGMTDPLQIAAKELQEKKIPLVVRRYLPDG 112
Query: 70 SYEDWGIDEL 79
YEDW +EL
Sbjct: 113 FYEDWTCEEL 122
>gi|399949803|gb|AFP65460.1| DNA-directed RNA polymerase I, II, and III 15kDa polypeptide
[Chroomonas mesostigmatica CCMP1168]
Length = 133
Score = 98.2 bits (243), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 46/72 (63%), Positives = 58/72 (80%), Gaps = 1/72 (1%)
Query: 12 VIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSY 71
+ +YE+AR+LG RALQ++M AP+M+E EGETD L IA KEL RKIPI IRRYLPD ++
Sbjct: 63 FLTKYEKARILGARALQLSMGAPLMIETEGETDALDIAAKELLKRKIPISIRRYLPDGTF 122
Query: 72 EDWGIDELKIID 83
EDW ++EL IID
Sbjct: 123 EDWLLNEL-IID 133
>gi|67524579|ref|XP_660351.1| hypothetical protein AN2747.2 [Aspergillus nidulans FGSC A4]
gi|40743999|gb|EAA63181.1| hypothetical protein AN2747.2 [Aspergillus nidulans FGSC A4]
gi|259486339|tpe|CBF84098.1| TPA: DNA-directed RNA polymerase I, II, and III subunit Rpb6
(AFU_orthologue; AFUA_1G05160) [Aspergillus nidulans
FGSC A4]
Length = 198
Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/68 (66%), Positives = 56/68 (82%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
T + +YERARVLGTRALQI++ APV+V+LEGETDPLQIAMKEL +KIP+I+RRYLP
Sbjct: 87 TTTPYMTKYERARVLGTRALQISLNAPVLVDLEGETDPLQIAMKELAQKKIPLIVRRYLP 146
Query: 68 DNSYEDWG 75
D + +G
Sbjct: 147 DGTEAAYG 154
>gi|361126023|gb|EHK98039.1| putative DNA-directed RNA polymerases I, II, and III subunit RPABC2
[Glarea lozoyensis 74030]
Length = 150
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/61 (70%), Positives = 54/61 (88%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
T + +YERAR+LGTRALQI+M APV+V+LEGETDPLQIA+KE+K RKIP+I+RRY+P
Sbjct: 89 TTTPYMTKYERARILGTRALQISMNAPVLVDLEGETDPLQIAIKEMKERKIPLIVRRYMP 148
Query: 68 D 68
D
Sbjct: 149 D 149
>gi|428176217|gb|EKX45103.1| hypothetical protein GUITHDRAFT_71663 [Guillardia theta CCMP2712]
Length = 94
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/73 (64%), Positives = 58/73 (79%), Gaps = 1/73 (1%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEG-ETDPLQIAMKELKARKIPIIIRRYL 66
+ T + +YERARVLGTRALQI+M APV+ + G E+DPL+IAMKELK KIP +IRRYL
Sbjct: 19 LTTPYMTKYERARVLGTRALQISMNAPVLTSVPGSESDPLRIAMKELKDGKIPFVIRRYL 78
Query: 67 PDNSYEDWGIDEL 79
PD S+EDW I +L
Sbjct: 79 PDGSFEDWPIADL 91
>gi|67478192|ref|XP_654512.1| DNA-directed RNA polymerases I, II, and III 23 kDa [Entamoeba
histolytica HM-1:IMSS]
gi|56471574|gb|EAL49133.1| DNA-directed RNA polymerases I, II, and III 23 kDa, putative
[Entamoeba histolytica HM-1:IMSS]
gi|449704784|gb|EMD44960.1| DNA-directed RNA polymerases I II and III 23 kDa, putative
[Entamoeba histolytica KU27]
Length = 122
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 47/70 (67%), Positives = 54/70 (77%)
Query: 10 TIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDN 69
T + +YE+ARVLGTRALQI+M APV V L G TD L+IAM ELKA KIP IIRR LP+
Sbjct: 50 TRFMTKYEKARVLGTRALQISMNAPVFVPLNGMTDALEIAMAELKAGKIPFIIRRRLPNG 109
Query: 70 SYEDWGIDEL 79
SYEDW + EL
Sbjct: 110 SYEDWKVSEL 119
>gi|429964663|gb|ELA46661.1| hypothetical protein VCUG_01887 [Vavraia culicis 'floridensis']
Length = 119
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 58/72 (80%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
+ + ++ +YE+ R++G RA+Q++M AP +VE+EGETD L+IA KE ARKIP I+RR LP
Sbjct: 32 VTSSLMTKYEKTRIIGMRAMQLSMNAPPLVEIEGETDALRIAEKEFYARKIPFIVRRRLP 91
Query: 68 DNSYEDWGIDEL 79
DN+YEDW I+EL
Sbjct: 92 DNTYEDWSINEL 103
>gi|384493789|gb|EIE84280.1| hypothetical protein RO3G_08990 [Rhizopus delemar RA 99-880]
Length = 155
Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 44/76 (57%), Positives = 62/76 (81%), Gaps = 1/76 (1%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
+ T + +YERARVLGTRALQI++ +PVM+EL GETD L IA +EL+ +++P+IIRRY+P
Sbjct: 81 LTTPYMTKYERARVLGTRALQISLNSPVMIELNGETDALVIANRELREKRLPLIIRRYMP 140
Query: 68 DNSYEDWGIDELKIID 83
D +YEDW + +L I+D
Sbjct: 141 DGTYEDWKVRDL-IVD 155
>gi|171686806|ref|XP_001908344.1| hypothetical protein [Podospora anserina S mat+]
gi|170943364|emb|CAP69017.1| unnamed protein product [Podospora anserina S mat+]
Length = 153
Score = 95.1 bits (235), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 42/62 (67%), Positives = 55/62 (88%)
Query: 9 ITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPD 68
T + +YE+AR+LGTRALQI+M APV+V+LEGETDPLQIA+KEL+ +KIP+I+RRY+PD
Sbjct: 80 TTPYMTKYEKARILGTRALQISMNAPVLVDLEGETDPLQIAIKELREKKIPLIVRRYMPD 139
Query: 69 NS 70
S
Sbjct: 140 GS 141
>gi|237832893|ref|XP_002365744.1| RNA polymerase II subunit RPB6, putative [Toxoplasma gondii ME49]
gi|211963408|gb|EEA98603.1| RNA polymerase II subunit RPB6, putative [Toxoplasma gondii ME49]
gi|221488202|gb|EEE26416.1| conserved hypothetical protein [Toxoplasma gondii GT1]
gi|221508714|gb|EEE34283.1| DNA-directed RNA polymerase IIB, putative [Toxoplasma gondii VEG]
Length = 146
Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 55/72 (76%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I + I ++E+ARV+GTRALQI+M AP+ + L+GETDPL IA KEL + IP IRRYLP
Sbjct: 72 ITSPYITKFEKARVIGTRALQISMNAPITIPLDGETDPLIIAEKELYQKTIPFTIRRYLP 131
Query: 68 DNSYEDWGIDEL 79
D SYEDW I EL
Sbjct: 132 DGSYEDWKIQEL 143
>gi|322694964|gb|EFY86781.1| DNA-directed RNA polymerases I [Metarhizium acridum CQMa 102]
Length = 141
Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 43/62 (69%), Positives = 54/62 (87%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
T + +YERAR+LGTRALQI+M APV+V+LEGETDPLQIA+KEL+ +KIP+I+RRYLP
Sbjct: 80 TTTPYMTKYERARILGTRALQISMNAPVLVDLEGETDPLQIAIKELREKKIPLIVRRYLP 139
Query: 68 DN 69
D
Sbjct: 140 DG 141
>gi|401408805|ref|XP_003883851.1| Polymerase (RNA) II (DNA directed) polypeptide F,related [Neospora
caninum Liverpool]
gi|325118268|emb|CBZ53819.1| Polymerase (RNA) II (DNA directed) polypeptide F,related [Neospora
caninum Liverpool]
Length = 146
Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 55/72 (76%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I + I ++E+ARV+GTRALQI+M AP+ + L+GETDPL IA KEL + IP IRRYLP
Sbjct: 72 ITSPYITKFEKARVIGTRALQISMNAPITIPLDGETDPLIIAEKELYQKTIPFTIRRYLP 131
Query: 68 DNSYEDWGIDEL 79
D SYEDW I EL
Sbjct: 132 DGSYEDWKIQEL 143
>gi|407042313|gb|EKE41265.1| RNA polymerases K / 14 to 18 kDa subunit domain containing protein
[Entamoeba nuttalli P19]
Length = 122
Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 46/70 (65%), Positives = 54/70 (77%)
Query: 10 TIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDN 69
T + +YE+ARVLGTRALQI+M APV V L G TD L+IAM ELKA KIP IIRR LP+
Sbjct: 50 TRFMTKYEKARVLGTRALQISMNAPVFVPLNGMTDALEIAMAELKAGKIPFIIRRRLPNG 109
Query: 70 SYEDWGIDEL 79
S+EDW + EL
Sbjct: 110 SFEDWKVSEL 119
>gi|167390225|ref|XP_001739254.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2
[Entamoeba dispar SAW760]
gi|167394897|ref|XP_001741144.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2
[Entamoeba dispar SAW760]
gi|165894406|gb|EDR22407.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2,
putative [Entamoeba dispar SAW760]
gi|165897105|gb|EDR24371.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2,
putative [Entamoeba dispar SAW760]
Length = 122
Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 46/70 (65%), Positives = 54/70 (77%)
Query: 10 TIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDN 69
T + +YE+ARVLGTRALQI+M APV V L G TD L+IAM ELKA KIP IIRR LP+
Sbjct: 50 TRFMTKYEKARVLGTRALQISMNAPVFVPLNGMTDALEIAMAELKAGKIPFIIRRRLPNG 109
Query: 70 SYEDWGIDEL 79
S+EDW + EL
Sbjct: 110 SFEDWKVSEL 119
>gi|358392032|gb|EHK41436.1| hypothetical protein TRIATDRAFT_77949 [Trichoderma atroviride IMI
206040]
Length = 126
Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 42/59 (71%), Positives = 54/59 (91%)
Query: 10 TIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPD 68
T + +YERAR+LGTRALQI+M APV+V+LEGETDPLQIA+KEL+ +KIP+I+RRY+PD
Sbjct: 67 TPYMTKYERARILGTRALQISMNAPVLVDLEGETDPLQIAIKELREKKIPLIVRRYMPD 125
>gi|358377941|gb|EHK15624.1| hypothetical protein TRIVIDRAFT_164408 [Trichoderma virens Gv29-8]
Length = 140
Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 42/62 (67%), Positives = 54/62 (87%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
T + +YERAR+LGTRALQI+M APV+V+LEGETDPLQIA+KEL+ +KIP+I+RRY+P
Sbjct: 79 TTTPYMTKYERARILGTRALQISMNAPVLVDLEGETDPLQIAIKELREKKIPLIVRRYMP 138
Query: 68 DN 69
D
Sbjct: 139 DG 140
>gi|322705854|gb|EFY97437.1| DNA-directed RNA polymerases I [Metarhizium anisopliae ARSEF 23]
Length = 141
Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 42/62 (67%), Positives = 54/62 (87%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
T + +YERAR+LGTRALQI+M APV+V+LEGETDPLQIA+KEL+ +KIP+I+RRY+P
Sbjct: 80 TTTPYMTKYERARILGTRALQISMNAPVLVDLEGETDPLQIAIKELREKKIPLIVRRYMP 139
Query: 68 DN 69
D
Sbjct: 140 DG 141
>gi|46124611|ref|XP_386859.1| hypothetical protein FG06683.1 [Gibberella zeae PH-1]
Length = 139
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 54/61 (88%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
T + +YERAR+LGTRALQI+M APV+V+LEGETDPLQIA+KE++ +KIP+I+RRY+P
Sbjct: 78 TTTPYMTKYERARILGTRALQISMNAPVLVDLEGETDPLQIAIKEMREKKIPLIVRRYMP 137
Query: 68 D 68
D
Sbjct: 138 D 138
>gi|159484600|ref|XP_001700342.1| subunit of DNA-directed RNA polymerase [Chlamydomonas
reinhardtii]
gi|158272383|gb|EDO98184.1| subunit of DNA-directed RNA polymerase [Chlamydomonas
reinhardtii]
Length = 87
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/61 (72%), Positives = 52/61 (85%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YE+ARVLGTRALQI+M APVMVEL GETDPL+IAMKEL+ +K+P IRRYLP
Sbjct: 27 ITTRYMTKYEKARVLGTRALQISMNAPVMVELSGETDPLEIAMKELREKKVPFTIRRYLP 86
Query: 68 D 68
D
Sbjct: 87 D 87
>gi|440494018|gb|ELQ76432.1| RNA polymerase subunit K [Trachipleistophora hominis]
Length = 119
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 57/72 (79%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
+ + ++ +YE+ R++G RA+Q++M AP +VE+E ETD L+IA KE ARKIP I+RR LP
Sbjct: 32 VTSPLMTKYEKTRIIGMRAMQLSMNAPPLVEIEAETDALRIAEKEFYARKIPFIVRRRLP 91
Query: 68 DNSYEDWGIDEL 79
DN+YEDW ++EL
Sbjct: 92 DNTYEDWNVNEL 103
>gi|240279812|gb|EER43317.1| DNA-directed RNA polymerase I [Ajellomyces capsulatus H143]
Length = 159
Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 56/72 (77%), Gaps = 6/72 (8%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
T + +YERARVLGTRALQI+M AP++V+LEGETDPLQIA+KEL +KIP+I+RR
Sbjct: 93 TTTPYMTKYERARVLGTRALQISMNAPILVDLEGETDPLQIALKELAQKKIPLIVRR--- 149
Query: 68 DNSYEDWGIDEL 79
YEDW +EL
Sbjct: 150 ---YEDWTCEEL 158
>gi|225562993|gb|EEH11272.1| DNA-directed RNA polymerase I [Ajellomyces capsulatus G186AR]
Length = 159
Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 56/72 (77%), Gaps = 6/72 (8%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
T + +YERARVLGTRALQI+M AP++V+LEGETDPLQIA+KEL +KIP+I+RR
Sbjct: 93 TTTPYMTKYERARVLGTRALQISMNAPILVDLEGETDPLQIALKELAQKKIPLIVRR--- 149
Query: 68 DNSYEDWGIDEL 79
YEDW +EL
Sbjct: 150 ---YEDWTCEEL 158
>gi|428174548|gb|EKX43443.1| hypothetical protein GUITHDRAFT_73062 [Guillardia theta CCMP2712]
Length = 95
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 42/67 (62%), Positives = 54/67 (80%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYE 72
+ +YER R+LG RALQI+M APVMV ++ ETDPL+IA KEL A K+P IIRR+LP+ S E
Sbjct: 17 MTKYERTRILGIRALQISMNAPVMVPVDKETDPLKIATKELIAGKVPFIIRRHLPNGSSE 76
Query: 73 DWGIDEL 79
DW ++EL
Sbjct: 77 DWAVNEL 83
>gi|29841200|gb|AAP06213.1| similar to NM_080171 RNA polymerase II 18kD subunit in Drosophila
melanogaster [Schistosoma japonicum]
Length = 123
Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 44/61 (72%), Positives = 52/61 (85%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERARVLG RALQ++M APVMVEL+GE DPL+IA KEL+A KIPIIIRR+LP
Sbjct: 60 ITTPYLTKYERARVLGARALQLSMSAPVMVELDGERDPLKIAEKELRANKIPIIIRRFLP 119
Query: 68 D 68
D
Sbjct: 120 D 120
>gi|403354386|gb|EJY76747.1| DNA-directed RNA polymerase, subunit K/omega [Oxytricha trifallax]
Length = 134
Score = 91.3 bits (225), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 42/73 (57%), Positives = 56/73 (76%), Gaps = 1/73 (1%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVE-LEGETDPLQIAMKELKARKIPIIIRRYL 66
I + + +YE+ARVLGTRALQI+ AP+M++ + GE DP ++A +EL RKIP IIRRYL
Sbjct: 60 ITSSFMTKYEKARVLGTRALQISKNAPLMIQPMPGEHDPYKLAERELNERKIPFIIRRYL 119
Query: 67 PDNSYEDWGIDEL 79
PD +YEDW + EL
Sbjct: 120 PDGTYEDWKLSEL 132
>gi|357017613|gb|AET50835.1| hypothetical protein [Eimeria tenella]
Length = 143
Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 40/74 (54%), Positives = 57/74 (77%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
+ + + ++E+ARV+GTRALQ+++ AP+ V EGETDPL +A KEL+ + +P IRRYLP
Sbjct: 69 LTSPYLTKFEKARVVGTRALQLSLSAPLTVSAEGETDPLLLAEKELRQKTLPFRIRRYLP 128
Query: 68 DNSYEDWGIDELKI 81
D S+EDW +DEL I
Sbjct: 129 DGSFEDWRLDELLI 142
>gi|115388511|ref|XP_001211761.1| DNA-directed RNA polymerases I [Aspergillus terreus NIH2624]
gi|114195845|gb|EAU37545.1| DNA-directed RNA polymerases I [Aspergillus terreus NIH2624]
Length = 163
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/74 (59%), Positives = 54/74 (72%), Gaps = 2/74 (2%)
Query: 8 IITIVIKRYERARVLGTRALQIA--MCAPVMVELEGETDPLQIAMKELKARKIPIIIRRY 65
T + +YERAR+ G L A M APV+V+LEGETDPLQIA+KEL +KIP+I+RRY
Sbjct: 89 TTTPYMTKYERARLFGGFILTGAASMNAPVLVDLEGETDPLQIAIKELNQKKIPLIVRRY 148
Query: 66 LPDNSYEDWGIDEL 79
LPD YEDW +EL
Sbjct: 149 LPDGYYEDWTCEEL 162
>gi|162606202|ref|XP_001713616.1| DNA-DIRECTED RNA POLYMERASES I, II, AND III 15 KD
POLYPEPTIDE(RPABC6) [Guillardia theta]
gi|13794536|gb|AAK39911.1|AF165818_119 DNA-DIRECTED RNA POLYMERASES I, II, AND III 15 KD
POLYPEPTIDE(RPABC6) [Guillardia theta]
Length = 126
Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 52/68 (76%)
Query: 12 VIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSY 71
++ +YE+AR+LG RALQI+M AP++ E+ +D L IA KEL RKIPI IRRYLP+ Y
Sbjct: 56 ILTKYEKARILGARALQISMGAPILTEVNTLSDSLDIASKELYERKIPITIRRYLPNGRY 115
Query: 72 EDWGIDEL 79
EDW I+EL
Sbjct: 116 EDWKIEEL 123
>gi|145506493|ref|XP_001439207.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124406391|emb|CAK71810.1| unnamed protein product [Paramecium tetraurelia]
Length = 156
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 38/71 (53%), Positives = 55/71 (77%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYE 72
+ +YERARV+GTRALQI+ +P+ V+ + TDP+Q+A +EL KIP IIRRYLP+ ++E
Sbjct: 86 LTKYERARVIGTRALQISKNSPIYVDPKETTDPIQVAQQELNENKIPFIIRRYLPNGNFE 145
Query: 73 DWGIDELKIID 83
DW + EL+ +D
Sbjct: 146 DWELQELERLD 156
>gi|118402103|ref|XP_001033371.1| RNA polymerases K / 14 to 18 kDa subunit family protein
[Tetrahymena thermophila]
gi|89287719|gb|EAR85708.1| RNA polymerases K / 14 to 18 kDa subunit family protein
[Tetrahymena thermophila SB210]
Length = 163
Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 55/72 (76%), Gaps = 1/72 (1%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEGET-DPLQIAMKELKARKIPIIIRRYLPDNSY 71
+ +YE+AR++GTRALQIA +P+ VE + + DP+ IA KE +KIP IIRRYLP+ Y
Sbjct: 92 LTKYEKARIIGTRALQIAQNSPIYVETDDKDYDPIAIAEKEFVQKKIPFIIRRYLPNKEY 151
Query: 72 EDWGIDELKIID 83
EDW +DEL+++D
Sbjct: 152 EDWALDELEVLD 163
>gi|330040364|ref|XP_003239876.1| DNA-directed RNA polymerase I, II, and III 15kDa polypeptide
[Cryptomonas paramecium]
gi|327206801|gb|AEA38978.1| DNA-directed RNA polymerase I, II, and III 15kDa polypeptide
[Cryptomonas paramecium]
Length = 130
Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 38/67 (56%), Positives = 52/67 (77%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYE 72
+ ++E+AR+LG RALQ++M AP+ ++ ETD L++A KEL RKIPI IRRYLP+ YE
Sbjct: 61 LTKFEKARILGARALQLSMGAPLTIKTNSETDVLELAAKELVERKIPITIRRYLPNGKYE 120
Query: 73 DWGIDEL 79
DW +DEL
Sbjct: 121 DWRVDEL 127
>gi|340503407|gb|EGR30001.1| RNA polymerases k subunit family protein, putative
[Ichthyophthirius multifiliis]
Length = 159
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 56/72 (77%), Gaps = 1/72 (1%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVEL-EGETDPLQIAMKELKARKIPIIIRRYLPDNSY 71
+ +YE+AR++GTRALQIA +P+ V+ E + DP+ IA KE +KIP IIRRYLP+ SY
Sbjct: 88 LTKYEKARIIGTRALQIAQNSPIYVDTDEKDYDPIAIAEKEFVQKKIPFIIRRYLPNKSY 147
Query: 72 EDWGIDELKIID 83
EDW +D+L+++D
Sbjct: 148 EDWPLDQLEVLD 159
>gi|387594090|gb|EIJ89114.1| hypothetical protein NEQG_00933 [Nematocida parisii ERTm3]
gi|387595709|gb|EIJ93332.1| hypothetical protein NEPG_01674 [Nematocida parisii ERTm1]
Length = 122
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 53/68 (77%)
Query: 12 VIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSY 71
++ ++ERA++LG RA QI+M AP+MVE ETDP++IA KELK +K P+I+ R LPDN+Y
Sbjct: 50 IMTKFERAKILGIRAQQISMSAPIMVEYGDETDPVEIAKKELKEKKTPLIVLRRLPDNTY 109
Query: 72 EDWGIDEL 79
E W + +L
Sbjct: 110 EKWAVKDL 117
>gi|378756013|gb|EHY66038.1| DNA-directed RNA polymerase [Nematocida sp. 1 ERTm2]
Length = 122
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 53/68 (77%)
Query: 12 VIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSY 71
++ ++ERA++LG RA QI+M AP+MVE ETDP++IA KELK +K P+I+ R LPDN+Y
Sbjct: 50 IMTKFERAKILGIRAQQISMSAPIMVEYGDETDPVEIAKKELKEKKTPLIVLRRLPDNTY 109
Query: 72 EDWGIDEL 79
E W + +L
Sbjct: 110 EKWAVKDL 117
>gi|123504313|ref|XP_001328715.1| DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide
[Trichomonas vaginalis G3]
gi|121911662|gb|EAY16492.1| DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide,
putative [Trichomonas vaginalis G3]
Length = 94
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/71 (54%), Positives = 54/71 (76%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYE 72
+ +YE+ARVLG RA+QIA APV +++ E DPL IA +ELK +K P+IIRR LPD +YE
Sbjct: 19 LTKYEKARVLGIRAMQIANGAPVQIDIGSEVDPLNIAEEELKQKKTPLIIRRTLPDGTYE 78
Query: 73 DWGIDELKIID 83
D ++EL +I+
Sbjct: 79 DVAVNELIVIN 89
>gi|123487982|ref|XP_001325065.1| DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide
[Trichomonas vaginalis G3]
gi|121907958|gb|EAY12842.1| DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide,
putative [Trichomonas vaginalis G3]
Length = 94
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/71 (54%), Positives = 54/71 (76%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYE 72
+ +YE+ARVLG RA+QIA APV +++ E DPL IA +ELK +K P+IIRR LPD +YE
Sbjct: 19 LTKYEKARVLGIRAMQIANGAPVQIDIGSEVDPLNIAEEELKQKKTPLIIRRTLPDGTYE 78
Query: 73 DWGIDELKIID 83
D ++EL +I+
Sbjct: 79 DVAVNELIVIN 89
>gi|154280422|ref|XP_001541024.1| DNA-directed RNA polymerases I [Ajellomyces capsulatus NAm1]
gi|150412967|gb|EDN08354.1| DNA-directed RNA polymerases I [Ajellomyces capsulatus NAm1]
Length = 177
Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 43/84 (51%), Positives = 55/84 (65%), Gaps = 12/84 (14%)
Query: 8 IITIVIKRYERARVLGTRALQI------------AMCAPVMVELEGETDPLQIAMKELKA 55
T + +YERARV T +L +M AP++V+LEGETDPLQIA+KEL
Sbjct: 93 TTTPYMTKYERARVFHTISLSAWRIVSSVLTRVDSMNAPILVDLEGETDPLQIALKELAQ 152
Query: 56 RKIPIIIRRYLPDNSYEDWGIDEL 79
+KIP+I+RRYLPD YEDW +EL
Sbjct: 153 KKIPLIVRRYLPDGWYEDWTCEEL 176
>gi|225715738|gb|ACO13715.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2 [Esox
lucius]
Length = 98
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 41/47 (87%), Positives = 43/47 (91%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELK 54
I T + +YERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELK
Sbjct: 52 ITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELK 98
>gi|401827236|ref|XP_003887710.1| DNA-directed RNA polymerase [Encephalitozoon hellem ATCC 50504]
gi|392998717|gb|AFM98729.1| DNA-directed RNA polymerase [Encephalitozoon hellem ATCC 50504]
Length = 116
Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 38/69 (55%), Positives = 50/69 (72%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYE 72
+ +YE+A V+G RA Q++ AP V++ E++PL IA EL +KIP IIRR LPDNS+E
Sbjct: 42 MTKYEKAHVIGVRASQLSAGAPPFVDIGNESNPLSIANMELNEKKIPFIIRRRLPDNSFE 101
Query: 73 DWGIDELKI 81
DW IDEL I
Sbjct: 102 DWAIDELMI 110
>gi|396081832|gb|AFN83446.1| DNA-directed RNA polymerase subunit K [Encephalitozoon romaleae
SJ-2008]
Length = 116
Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 38/69 (55%), Positives = 50/69 (72%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYE 72
+ +YE+A V+G RA Q++ AP V++ E++PL IA EL +KIP IIRR LPDNS+E
Sbjct: 42 MTKYEKAHVIGVRASQLSAGAPPFVDIGNESNPLNIANMELNEKKIPFIIRRRLPDNSFE 101
Query: 73 DWGIDELKI 81
DW IDEL I
Sbjct: 102 DWAIDELMI 110
>gi|303390178|ref|XP_003073320.1| DNA-directed RNA polymerase subunit K [Encephalitozoon intestinalis
ATCC 50506]
gi|303302466|gb|ADM11960.1| DNA-directed RNA polymerase subunit K [Encephalitozoon intestinalis
ATCC 50506]
Length = 116
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/69 (55%), Positives = 50/69 (72%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYE 72
+ +YE+A V+G RA Q++ AP V++ E++PL IA EL +KIP IIRR LPDNS+E
Sbjct: 42 MTKYEKAHVIGVRASQLSAGAPPFVDIGNESNPLAIANMELNEKKIPFIIRRRLPDNSFE 101
Query: 73 DWGIDELKI 81
DW IDEL I
Sbjct: 102 DWAIDELMI 110
>gi|402465615|gb|EJW01347.1| hypothetical protein EDEG_00472 [Edhazardia aedis USNM 41457]
Length = 110
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/67 (55%), Positives = 53/67 (79%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYE 72
+ +YE+A +LG RALQI+M AP +V++E ETDPL+IA+ EL +K+P +RR LPD SYE
Sbjct: 39 MTKYEKAHILGIRALQISMGAPPLVDIEYETDPLKIALMELNQKKMPFQLRRRLPDASYE 98
Query: 73 DWGIDEL 79
+W I+E+
Sbjct: 99 EWDINEM 105
>gi|19173358|ref|NP_597161.1| DNA-DIRECTED RNA POLYMERASE I [Encephalitozoon cuniculi GB-M1]
Length = 144
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 50/69 (72%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYE 72
+ +YE+A V+G RA Q++ AP V++ ET+PL IA EL +KIP IIRR LPD+S+E
Sbjct: 70 MTKYEKAHVIGVRATQLSAGAPPFVDIGNETNPLNIANMELSEKKIPFIIRRKLPDSSFE 129
Query: 73 DWGIDELKI 81
DW +DEL I
Sbjct: 130 DWAVDELMI 138
>gi|302916149|ref|XP_003051885.1| hypothetical protein NECHADRAFT_79417 [Nectria haematococca mpVI
77-13-4]
gi|256732824|gb|EEU46172.1| hypothetical protein NECHADRAFT_79417 [Nectria haematococca mpVI
77-13-4]
Length = 161
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/77 (55%), Positives = 53/77 (68%), Gaps = 5/77 (6%)
Query: 8 IITIVIKRYERARVLGTRALQIAMC-----APVMVELEGETDPLQIAMKELKARKIPIII 62
T + +YERAR+LGTRALQI A L GETDPLQIA+KE++ +KIP+I+
Sbjct: 83 TTTPYMTKYERARILGTRALQIRFAFLERDASRPGWLTGETDPLQIAIKEMREKKIPLIV 142
Query: 63 RRYLPDNSYEDWGIDEL 79
RRYLPD YEDW +EL
Sbjct: 143 RRYLPDGYYEDWTCEEL 159
>gi|449328894|gb|AGE95170.1| DNA-directed RNA polymerase I [Encephalitozoon cuniculi]
Length = 144
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 50/69 (72%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYE 72
+ +YE+A V+G RA Q++ AP V++ ET+PL IA EL +KIP IIRR LPD+S+E
Sbjct: 70 MTKYEKAHVIGVRATQLSAGAPPFVDIGNETNPLNIANMELSEKKIPFIIRRKLPDSSFE 129
Query: 73 DWGIDELKI 81
DW +DEL I
Sbjct: 130 DWAVDELMI 138
>gi|392512790|emb|CAD26337.2| DNA-DIRECTED RNA POLYMERASE I [Encephalitozoon cuniculi GB-M1]
Length = 116
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 50/69 (72%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYE 72
+ +YE+A V+G RA Q++ AP V++ ET+PL IA EL +KIP IIRR LPD+S+E
Sbjct: 42 MTKYEKAHVIGVRATQLSAGAPPFVDIGNETNPLNIANMELSEKKIPFIIRRKLPDSSFE 101
Query: 73 DWGIDELKI 81
DW +DEL I
Sbjct: 102 DWAVDELMI 110
>gi|145501822|ref|XP_001436891.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124404036|emb|CAK69494.1| unnamed protein product [Paramecium tetraurelia]
Length = 156
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 53/71 (74%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYE 72
+ +YERARV+GTRALQI+ +P+ V+ + TDP+ +A +EL KIP IIRRY P+ ++E
Sbjct: 86 LTKYERARVIGTRALQISKNSPIYVDPKETTDPILVAQQELNENKIPFIIRRYWPNGNFE 145
Query: 73 DWGIDELKIID 83
DW + EL+ +D
Sbjct: 146 DWELQELERLD 156
>gi|443898341|dbj|GAC75676.1| hypothetical protein PANT_18d00010 [Pseudozyma antarctica T-34]
Length = 218
Score = 82.0 bits (201), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 35/53 (66%), Positives = 44/53 (83%)
Query: 31 MCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDWGIDELKIID 83
M APV+V EGETDPL+IAMKEL A+KIP+++RRYLPD SYEDW + EL + +
Sbjct: 1 MNAPVLVPTEGETDPLEIAMKELAAKKIPLVVRRYLPDGSYEDWTVSELIVTE 53
>gi|253742774|gb|EES99463.1| DNA-directed RNA polymerase II RPB6 [Giardia intestinalis ATCC
50581]
Length = 104
Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 52/74 (70%), Gaps = 3/74 (4%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELE---GETDPLQIAMKELKARKIPIIIRRYLPDN 69
+ ++E+AR+LGTRA Q++M AP + + G DPL +A +EL IPIIIRR+LPD
Sbjct: 31 LTKFEQARILGTRAYQLSMGAPAHITITDKGGHLDPLVLARRELANNAIPIIIRRHLPDG 90
Query: 70 SYEDWGIDELKIID 83
+YEDW + EL IID
Sbjct: 91 TYEDWKLSELHIID 104
>gi|159113722|ref|XP_001707087.1| DNA-directed RNA polymerase II RPB6 [Giardia lamblia ATCC 50803]
gi|25140279|gb|AAM77737.2|AF510645_1 RNA polymerase II subunit Rpb6 [Giardia intestinalis]
gi|157435189|gb|EDO79413.1| DNA-directed RNA polymerase II RPB6 [Giardia lamblia ATCC 50803]
gi|308159580|gb|EFO62107.1| DNA-directed RNA polymerase II RPB6 [Giardia lamblia P15]
Length = 104
Score = 81.6 bits (200), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 52/74 (70%), Gaps = 3/74 (4%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELE---GETDPLQIAMKELKARKIPIIIRRYLPDN 69
+ ++E+AR+LGTRA Q++M AP + + G DPL +A +EL IPIIIRR+LPD
Sbjct: 31 LTKFEQARILGTRAYQLSMGAPAHITITDKGGHLDPLVLARRELANNAIPIIIRRHLPDG 90
Query: 70 SYEDWGIDELKIID 83
+YEDW + EL IID
Sbjct: 91 TYEDWKLSELHIID 104
>gi|397578077|gb|EJK50784.1| hypothetical protein THAOC_30115 [Thalassiosira oceanica]
Length = 137
Score = 80.9 bits (198), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 38/52 (73%), Positives = 44/52 (84%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIP 59
I T + +YERARVLGTRALQI+M APVMV+LEGETDPL+IA KEL+ RK P
Sbjct: 78 ITTRYLTKYERARVLGTRALQISMNAPVMVDLEGETDPLKIAQKELRERKNP 129
>gi|14578297|gb|AAF99463.1| PV1H14085_P [Plasmodium vivax]
Length = 157
Score = 80.9 bits (198), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 44/92 (47%), Positives = 59/92 (64%), Gaps = 17/92 (18%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELE---GE-------------TDPLQIAMK 51
I + + +YE+AR++GTRALQI++ AP+ + +E GE DPL IA K
Sbjct: 67 ITSPYLTKYEKARIIGTRALQISLNAPLTIPIETQGGEVSNGKNEYDNYLNNDPLVIAEK 126
Query: 52 ELKARKIPIIIRRYLPDNSYEDWGIDELKIID 83
EL + IP I+RRYLP+ SYEDW +DEL IID
Sbjct: 127 ELHNKSIPFILRRYLPNGSYEDWKLDEL-IID 157
>gi|156094035|ref|XP_001613055.1| DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide
[Plasmodium vivax Sal-1]
gi|148801929|gb|EDL43328.1| DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide,
putative [Plasmodium vivax]
Length = 153
Score = 80.9 bits (198), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 44/92 (47%), Positives = 59/92 (64%), Gaps = 17/92 (18%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELE---GE-------------TDPLQIAMK 51
I + + +YE+AR++GTRALQI++ AP+ + +E GE DPL IA K
Sbjct: 63 ITSPYLTKYEKARIIGTRALQISLNAPLTIPIETQGGEVSNGKNEYDNYLNNDPLVIAEK 122
Query: 52 ELKARKIPIIIRRYLPDNSYEDWGIDELKIID 83
EL + IP I+RRYLP+ SYEDW +DEL IID
Sbjct: 123 ELHNKSIPFILRRYLPNGSYEDWKLDEL-IID 153
>gi|119580606|gb|EAW60202.1| polymerase (RNA) II (DNA directed) polypeptide F, isoform CRA_a
[Homo sapiens]
Length = 118
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/51 (76%), Positives = 44/51 (86%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKI 58
I T + +YERARVLGTRALQIAMCAPVMVELEGETDPL IAMKEL +++
Sbjct: 52 ITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELNPKRL 102
>gi|449511854|ref|XP_002200177.2| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like, partial [Taeniopygia guttata]
Length = 93
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/47 (85%), Positives = 42/47 (89%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELK 54
I T + +YERARVLGTRALQIAMCAPVMVELEGETDPL IAMKELK
Sbjct: 47 ITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELK 93
>gi|296004344|ref|XP_001351108.2| DNA-directed RNA polymerase subunit I, putative [Plasmodium
falciparum 3D7]
gi|225685549|emb|CAB10577.2| DNA-directed RNA polymerase subunit I, putative [Plasmodium
falciparum 3D7]
Length = 153
Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 57/91 (62%), Gaps = 16/91 (17%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEG---------------ETDPLQIAMKE 52
I + + +YE+AR++GTRALQI+M AP+ + +E DPL IA KE
Sbjct: 64 ITSPYLTKYEKARIIGTRALQISMNAPLTIPIETSNDMINSKNEYDNYLNNDPLVIAEKE 123
Query: 53 LKARKIPIIIRRYLPDNSYEDWGIDELKIID 83
L + IP I+RRYLP+ SYEDW +DEL IID
Sbjct: 124 LYNKSIPFILRRYLPNGSYEDWRLDEL-IID 153
>gi|123405874|ref|XP_001302693.1| DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide
[Trichomonas vaginalis G3]
gi|121884007|gb|EAX89763.1| DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide,
putative [Trichomonas vaginalis G3]
Length = 85
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 54/74 (72%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERARVLGTR +QI++ APV ++ TDP+ IA KEL+A ++P+IIRRYLP
Sbjct: 12 ITTPYLTKYERARVLGTRGMQISLGAPVTIDAGDLTDPIAIAEKELEAGQLPLIIRRYLP 71
Query: 68 DNSYEDWGIDELKI 81
++ YED + L I
Sbjct: 72 NHEYEDVAVKYLII 85
>gi|403223948|dbj|BAM42078.1| RNA polymerase common subunit [Theileria orientalis strain
Shintoku]
Length = 153
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 60/103 (58%), Gaps = 22/103 (21%)
Query: 2 VFSPSFIITIVIKRYERARVLGTRALQIAMCAPVMVELEGETD----------------- 44
V S I T + +YE+AR++GTRALQI++ AP+ + L+G D
Sbjct: 52 VDSAHRITTPYLTKYEKARIIGTRALQISLNAPITIPLDGAADMNEENVASLGDFGDTQT 111
Query: 45 ----PLQIAMKELKARKIPIIIRRYLPDNSYEDWGIDELKIID 83
PL IA KEL + IP IIRRYLP+ SYEDW I+EL IID
Sbjct: 112 AAIDPLIIAEKELYQKTIPFIIRRYLPNGSYEDWKIEEL-IID 153
>gi|71028906|ref|XP_764096.1| hypothetical protein [Theileria parva strain Muguga]
gi|68351050|gb|EAN31813.1| hypothetical protein TP04_0461 [Theileria parva]
Length = 391
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 57/92 (61%), Gaps = 22/92 (23%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEGET---------------------DPLQIAMK 51
+ +YE+AR++GTRALQI++ AP+ + ++G + DPL IA K
Sbjct: 301 LTKYEKARIIGTRALQISLNAPITIPIDGPSEATDDGFTTLGDFGDTQTTAIDPLIIAEK 360
Query: 52 ELKARKIPIIIRRYLPDNSYEDWGIDELKIID 83
EL + +P I+RRYLP+ SYEDW IDEL IID
Sbjct: 361 ELYQKTVPFIVRRYLPNGSYEDWKIDEL-IID 391
>gi|389583563|dbj|GAB66298.1| DNA-directed RNA polymerases I II and III 14.4 kDa polypeptide,
partial [Plasmodium cynomolgi strain B]
Length = 139
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/93 (45%), Positives = 58/93 (62%), Gaps = 18/93 (19%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGE-----------------TDPLQIAM 50
I + + +YE+AR++GTRALQI++ AP+ + +E + DPL IA
Sbjct: 48 ITSPYLTKYEKARIIGTRALQISLNAPLTIPIETQGGGDVSNGKNEYDNYLNNDPLVIAE 107
Query: 51 KELKARKIPIIIRRYLPDNSYEDWGIDELKIID 83
KEL + IP I+RRYLP+ SYEDW +DEL IID
Sbjct: 108 KELHNKSIPFILRRYLPNGSYEDWKLDEL-IID 139
>gi|84996807|ref|XP_953125.1| RNA polymerase common subunit (Rpb6 homologue) [Theileria annulata
strain Ankara]
gi|65304121|emb|CAI76500.1| RNA polymerase common subunit (Rpb6 homologue), putative [Theileria
annulata]
Length = 153
Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 61/104 (58%), Gaps = 22/104 (21%)
Query: 1 MVFSPSFIITIVIKRYERARVLGTRALQIAMCAPVMVELEGET----------------- 43
V S I + + +YE+AR++GTRALQI++ AP+ + ++G +
Sbjct: 51 QVDSAHRITSPYLTKYEKARIIGTRALQISLNAPITIPIDGPSEANDDGFTTLGDFGDTQ 110
Query: 44 ----DPLQIAMKELKARKIPIIIRRYLPDNSYEDWGIDELKIID 83
DPL IA KEL + +P I+RRYLP+ SYEDW IDEL IID
Sbjct: 111 TTAIDPLIIAEKELYQKTVPFIVRRYLPNGSYEDWKIDEL-IID 153
>gi|221055753|ref|XP_002259015.1| dna-directed rna polymerase subunit i [Plasmodium knowlesi strain
H]
gi|193809085|emb|CAQ39788.1| dna-directed rna polymerase subunit i, putative [Plasmodium
knowlesi strain H]
Length = 158
Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 58/92 (63%), Gaps = 17/92 (18%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGE----------------TDPLQIAMK 51
I + + +YE+AR++GTRALQI++ AP+ + +E + DPL IA +
Sbjct: 68 ITSPYLTKYEKARIIGTRALQISLNAPLTIPIETQGGDVSNGKNEYDNYLNNDPLVIAER 127
Query: 52 ELKARKIPIIIRRYLPDNSYEDWGIDELKIID 83
EL + IP I+RRYLP+ SYEDW +DEL IID
Sbjct: 128 ELHNKSIPFILRRYLPNGSYEDWKLDEL-IID 158
>gi|161899317|ref|XP_001712885.1| DNA-directed RNA polymerase I, II and III [Bigelowiella natans]
gi|75756379|gb|ABA27273.1| DNA-directed RNA polymerase I, II and III [Bigelowiella natans]
Length = 115
Score = 78.2 bits (191), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 50/72 (69%)
Query: 12 VIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSY 71
I ++E+A++LG RA QI+ P V LEGETDPL IA+KE + KIP+ IRRY D SY
Sbjct: 44 FISKFEKAKLLGVRAKQISNGNPPTVPLEGETDPLLIALKEYRENKIPLKIRRYFSDGSY 103
Query: 72 EDWGIDELKIID 83
ED+ + EL I+
Sbjct: 104 EDFFVWELADIN 115
>gi|70944235|ref|XP_742071.1| DNA-directed RNA polymerase subunit I [Plasmodium chabaudi
chabaudi]
gi|56520843|emb|CAH77951.1| DNA-directed RNA polymerase subunit I, putative [Plasmodium
chabaudi chabaudi]
Length = 156
Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/91 (45%), Positives = 58/91 (63%), Gaps = 16/91 (17%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETD---------------PLQIAMKE 52
I + + +YE+AR++GTRALQI++ AP+ + +E + D PL IA +E
Sbjct: 67 ITSPYLTKYEKARIIGTRALQISLNAPLTIPIETQNDKSNGKSDYDNYLNNDPLVIAERE 126
Query: 53 LKARKIPIIIRRYLPDNSYEDWGIDELKIID 83
L + IP I+RRYLP+ SYEDW +DEL IID
Sbjct: 127 LYNKSIPFILRRYLPNGSYEDWRLDEL-IID 156
>gi|82915479|ref|XP_729090.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23485934|gb|EAA20655.1| Plasmodium vivax PV1H14085_P [Plasmodium yoelii yoelii]
Length = 137
Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/91 (45%), Positives = 58/91 (63%), Gaps = 16/91 (17%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETD---------------PLQIAMKE 52
I + + +YE+AR++GTRALQI++ AP+ + +E + D PL IA +E
Sbjct: 48 ITSPYLTKYEKARIIGTRALQISLNAPLTIPIETQNDKSNGKSDYDNYLNNDPLVIAERE 107
Query: 53 LKARKIPIIIRRYLPDNSYEDWGIDELKIID 83
L + IP I+RRYLP+ SYEDW +DEL IID
Sbjct: 108 LYNKSIPFILRRYLPNGSYEDWRLDEL-IID 137
>gi|399217060|emb|CCF73747.1| unnamed protein product [Babesia microti strain RI]
Length = 151
Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/96 (46%), Positives = 59/96 (61%), Gaps = 15/96 (15%)
Query: 2 VFSPSFIITIVIKRYERARVLGTRALQIAMCAPVMVELE-GETD-------------PLQ 47
V S + I + + +YE+AR++GTRALQI++ AP+ + + GE D PL
Sbjct: 57 VSSSNRITSPYLTKYEKARIIGTRALQISLNAPITIPFDFGEQDTIDSASMVDAAIDPLV 116
Query: 48 IAMKELKARKIPIIIRRYLPDNSYEDWGIDELKIID 83
IA KEL + IP IRRYLP+ SYEDW I EL IID
Sbjct: 117 IAEKELYQKTIPFTIRRYLPNGSYEDWKIQEL-IID 151
>gi|212540032|ref|XP_002150171.1| DNA-directed RNA polymerase I, II, and III subunit Rpb6
[Talaromyces marneffei ATCC 18224]
gi|210067470|gb|EEA21562.1| DNA-directed RNA polymerase I, II, and III subunit Rpb6
[Talaromyces marneffei ATCC 18224]
Length = 141
Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/49 (71%), Positives = 42/49 (85%)
Query: 9 ITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARK 57
T + +YERARVLGTRALQI+M APV+V+LEGETDPLQIA+KEL +K
Sbjct: 91 TTPYMTKYERARVLGTRALQISMNAPVLVDLEGETDPLQIALKELNQKK 139
>gi|156084340|ref|XP_001609653.1| DNA-directed RNA polymerase subunit I [Babesia bovis T2Bo]
gi|154796905|gb|EDO06085.1| DNA-directed RNA polymerase subunit I, putative [Babesia bovis]
Length = 154
Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 43/98 (43%), Positives = 60/98 (61%), Gaps = 23/98 (23%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELE--------------GET--------DP 45
I + + +YE+AR++GTRALQI++ AP+ + ++ GE+ DP
Sbjct: 58 ITSPYMTKYEKARIIGTRALQISLNAPITIPVDASMDTVDEGITMGFGESVDTSAAAIDP 117
Query: 46 LQIAMKELKARKIPIIIRRYLPDNSYEDWGIDELKIID 83
L IA KEL + +P IIRRYLP+ SYEDW I+EL IID
Sbjct: 118 LVIAEKELYQKSVPFIIRRYLPNGSYEDWKIEEL-IID 154
>gi|327354456|gb|EGE83313.1| DNA-directed RNA polymerase I [Ajellomyces dermatitidis ATCC 18188]
Length = 141
Score = 74.7 bits (182), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 34/51 (66%), Positives = 42/51 (82%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKI 58
T + +YERARVLGTRALQI+M AP++V+LEGETDPLQIA+KEL +K
Sbjct: 90 TTTPYMTKYERARVLGTRALQISMNAPILVDLEGETDPLQIALKELAQKKF 140
>gi|38569908|gb|AAR24478.1| predicted DNA-directed RNA polymerase IIb [uncultured crenarchaeote
DeepAnt-EC39]
Length = 168
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 53/71 (74%), Gaps = 1/71 (1%)
Query: 11 IVIKRYERARVLGTRALQIAMCAPVMVEL-EGETDPLQIAMKELKARKIPIIIRRYLPDN 69
I + R+E+AR++G RALQ+++ APV VE+ + T LQIAM+ELK R IPI+I+R LP+
Sbjct: 98 ITLTRFEKARIMGARALQLSLGAPVFVEIPKNTTTSLQIAMEELKKRVIPIVIKRTLPNQ 157
Query: 70 SYEDWGIDELK 80
Y++ +D+ +
Sbjct: 158 DYQNIPLDKFQ 168
>gi|429329679|gb|AFZ81438.1| DNA-directed RNA polymerase subunit I, putative [Babesia equi]
Length = 151
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 60/96 (62%), Gaps = 21/96 (21%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELE---------------GET-----DPLQ 47
I + + +YE+AR++GTRALQI++ AP+ + ++ G+T DPL
Sbjct: 57 ITSPYLTKYEKARIIGTRALQISLNAPITIPIDSTDAGDDGMHSVGDFGDTQTAAIDPLI 116
Query: 48 IAMKELKARKIPIIIRRYLPDNSYEDWGIDELKIID 83
IA +EL + +P I+RRYLP+ SYEDW I+EL IID
Sbjct: 117 IAERELYQKTVPFIVRRYLPNGSYEDWRIEEL-IID 151
>gi|429961647|gb|ELA41192.1| hypothetical protein VICG_01791 [Vittaforma corneae ATCC 50505]
Length = 100
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 46/68 (67%)
Query: 16 YERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDWG 75
YE+A ++G RA Q+ AP V++ D +QIA KEL RK+P IIRR LPD S+EDW
Sbjct: 30 YEKAHIIGVRAAQLNDDAPPFVDIGDLVDCIQIAKKELAERKLPFIIRRKLPDGSFEDWP 89
Query: 76 IDELKIID 83
IDEL I D
Sbjct: 90 IDELLIPD 97
>gi|269859947|ref|XP_002649697.1| DNA-directed RNA polymerase, subunit K/omega [Enterocytozoon
bieneusi H348]
gi|220066892|gb|EED44362.1| DNA-directed RNA polymerase, subunit K/omega [Enterocytozoon
bieneusi H348]
Length = 75
Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 49/66 (74%)
Query: 16 YERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYEDWG 75
YE+A+++G RA Q++ AP +V++ TD ++IA KEL +K+P I+RR LP+ SYEDW
Sbjct: 4 YEKAKIIGVRATQLSDDAPPLVDIGNLTDCIEIAKKELAEKKLPFIVRRVLPNGSYEDWK 63
Query: 76 IDELKI 81
I+EL I
Sbjct: 64 IEELLI 69
>gi|73668948|ref|YP_304963.1| DNA-directed RNA polymerase subunit K [Methanosarcina barkeri
str. Fusaro]
gi|72396110|gb|AAZ70383.1| DNA-directed RNA polymerase, subunit K [Methanosarcina barkeri
str. Fusaro]
Length = 60
Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 41/50 (82%)
Query: 15 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
R+ERAR++G RALQIAM APV+VE +G DPL +A+KELKA IPI ++R
Sbjct: 8 RFERARIIGARALQIAMGAPVLVEDDGRLDPLNLAIKELKAGVIPITVKR 57
>gi|167044366|gb|ABZ09044.1| putative RNA polymerase Rpb6 [uncultured marine crenarchaeote
HF4000_APKG6C9]
Length = 168
Score = 67.8 bits (164), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 51/67 (76%), Gaps = 1/67 (1%)
Query: 12 VIKRYERARVLGTRALQIAMCAPVMVEL-EGETDPLQIAMKELKARKIPIIIRRYLPDNS 70
++ R+E+AR++G RALQ+++ APV +E+ + T L+IAM+ELK + IPI+I+R LP+
Sbjct: 99 MLTRFEKARIMGARALQLSLGAPVFIEIPKNATTSLEIAMEELKQKVIPIVIKRTLPNGD 158
Query: 71 YEDWGID 77
Y++ +D
Sbjct: 159 YQNLPLD 165
>gi|21227861|ref|NP_633783.1| DNA-directed RNA polymerase subunit K [Methanosarcina mazei Go1]
gi|23822087|sp|Q8PW42.1|RPOK_METMA RecName: Full=DNA-directed RNA polymerase subunit K
gi|20906274|gb|AAM31455.1| DNA-directed RNA polymerase subunit K [Methanosarcina mazei Go1]
Length = 83
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 41/50 (82%)
Query: 15 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
R+ERAR++G RALQIAM APV+VE +G DPL +A++ELKA IPI ++R
Sbjct: 31 RFERARIVGARALQIAMGAPVLVEDDGRLDPLGVAIEELKAGVIPITVKR 80
>gi|302511549|ref|XP_003017726.1| hypothetical protein ARB_04609 [Arthroderma benhamiae CBS 112371]
gi|291181297|gb|EFE37081.1| hypothetical protein ARB_04609 [Arthroderma benhamiae CBS 112371]
Length = 194
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/45 (66%), Positives = 36/45 (80%)
Query: 24 TRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPD 68
T M AP++V+LEGETDPLQIA+KEL +KIP+IIRRYLPD
Sbjct: 144 TTPYMTNMNAPILVDLEGETDPLQIALKELNQKKIPLIIRRYLPD 188
>gi|302666747|ref|XP_003024970.1| hypothetical protein TRV_00891 [Trichophyton verrucosum HKI 0517]
gi|291189048|gb|EFE44359.1| hypothetical protein TRV_00891 [Trichophyton verrucosum HKI 0517]
Length = 194
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/45 (66%), Positives = 36/45 (80%)
Query: 24 TRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPD 68
T M AP++V+LEGETDPLQIA+KEL +KIP+IIRRYLPD
Sbjct: 144 TTPYMTNMNAPILVDLEGETDPLQIALKELNQKKIPLIIRRYLPD 188
>gi|20089488|ref|NP_615563.1| DNA-directed RNA polymerase subunit K [Methanosarcina acetivorans
C2A]
gi|23822097|sp|Q8TT40.1|RPOK_METAC RecName: Full=DNA-directed RNA polymerase subunit K
gi|19914395|gb|AAM04043.1| DNA-directed RNA polymerase, subunit K [Methanosarcina
acetivorans C2A]
Length = 60
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/50 (60%), Positives = 40/50 (80%)
Query: 15 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
R+ERAR++G RALQIAM APV+V+ +G DPL +A+ ELKA IPI ++R
Sbjct: 8 RFERARIVGARALQIAMGAPVLVDDDGRLDPLGVAIAELKAEIIPITVKR 57
>gi|441432172|ref|YP_007354214.1| RNA polymerase Rpb6 [Acanthamoeba polyphaga moumouvirus]
gi|440383252|gb|AGC01778.1| RNA polymerase Rpb6 [Acanthamoeba polyphaga moumouvirus]
Length = 336
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/71 (45%), Positives = 43/71 (60%)
Query: 12 VIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSY 71
++ YE R+LGTRA Q A +V+ + P ++A EL A+ P IIRR LP Y
Sbjct: 204 IMTYYEMVRILGTRAQQFNYGAKPLVQGVNDLHPAKMAYVELIAKMTPFIIRRNLPGKKY 263
Query: 72 EDWGIDELKII 82
EDW I+EL+II
Sbjct: 264 EDWKINELEII 274
>gi|371945219|gb|AEX63039.1| DNA-directed RNA polymerase subunit 6 [Moumouvirus Monve]
Length = 341
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/71 (45%), Positives = 43/71 (60%)
Query: 12 VIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSY 71
++ YE R+LGTRA Q A +V+ + P ++A EL A+ P IIRR LP Y
Sbjct: 204 IMTYYEMVRILGTRAQQFNYGAKPLVQGVNDLHPAKMAYVELIAKMTPFIIRRNLPGKKY 263
Query: 72 EDWGIDELKII 82
EDW I+EL+II
Sbjct: 264 EDWKINELEII 274
>gi|451927638|gb|AGF85516.1| polymerase Rpb6 [Moumouvirus goulette]
Length = 314
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/71 (45%), Positives = 42/71 (59%)
Query: 12 VIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSY 71
++ YE R+LGTRA Q A +V+ + P ++A EL A+ P IIRR LP Y
Sbjct: 188 IMTYYEMVRILGTRAQQFNYSAKPLVQGVSDLHPAKMAYVELMAKMTPFIIRRNLPGKKY 247
Query: 72 EDWGIDELKII 82
EDW I EL+II
Sbjct: 248 EDWKISELEII 258
>gi|449524488|ref|XP_004169254.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like, partial [Cucumis sativus]
Length = 97
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/35 (80%), Positives = 33/35 (94%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEGETDPLQ 47
+ +YERAR+LGTRALQI+M APVMVELEGETDPL+
Sbjct: 63 MTKYERARILGTRALQISMNAPVMVELEGETDPLE 97
>gi|351737357|gb|AEQ60392.1| hypothetical protein [Acanthamoeba castellanii mamavirus]
Length = 387
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 33/72 (45%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 12 VIKRYERARVLGTRALQIAMCA-PVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNS 70
++ YE R+LGTRA Q A P++ +EG P ++A EL A+ P I+RR+LP
Sbjct: 192 ILTYYEIVRILGTRAQQFNYGAKPLIKGVEG-MHPAKMAFVELTAKMTPFIVRRHLPGKK 250
Query: 71 YEDWGIDELKII 82
YEDW IDEL +I
Sbjct: 251 YEDWRIDELGMI 262
>gi|311977585|ref|YP_003986705.1| DNA-directed RNA polymerase subunit 6 [Acanthamoeba polyphaga
mimivirus]
gi|308204706|gb|ADO18507.1| DNA-directed RNA polymerase subunit 6 [Acanthamoeba polyphaga
mimivirus]
Length = 396
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 33/72 (45%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 12 VIKRYERARVLGTRALQIAMCA-PVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNS 70
++ YE R+LGTRA Q A P++ +EG P ++A EL A+ P I+RR+LP
Sbjct: 192 ILTYYEIVRILGTRAQQFNYGAKPLIKGVEG-MHPAKMAFVELTAKMTPFIVRRHLPGKK 250
Query: 71 YEDWGIDELKII 82
YEDW IDEL +I
Sbjct: 251 YEDWRIDELGMI 262
>gi|398257060|gb|EJN40668.1| putative RNA polymerase subunit 6 [Acanthamoeba polyphaga
lentillevirus]
Length = 365
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 33/72 (45%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 12 VIKRYERARVLGTRALQIAMCA-PVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNS 70
++ YE R+LGTRA Q A P++ +EG P ++A EL A+ P I+RR+LP
Sbjct: 192 ILTYYEIVRILGTRAQQFNYGAKPLIKGVEG-MHPAKMAFVELTAKMTPFIVRRHLPGKK 250
Query: 71 YEDWGIDELKII 82
YEDW IDEL +I
Sbjct: 251 YEDWRIDELGMI 262
>gi|339061142|gb|AEJ34446.1| putative RNA polymerase subunit 6 [Acanthamoeba polyphaga
mimivirus]
Length = 406
Score = 62.4 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 33/72 (45%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 12 VIKRYERARVLGTRALQIAMCA-PVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNS 70
++ YE R+LGTRA Q A P++ +EG P ++A EL A+ P I+RR+LP
Sbjct: 202 ILTYYEIVRILGTRAQQFNYGAKPLIKGVEG-MHPAKMAFVELTAKMTPFIVRRHLPGKK 260
Query: 71 YEDWGIDELKII 82
YEDW IDEL +I
Sbjct: 261 YEDWRIDELGMI 272
>gi|118575501|ref|YP_875244.1| DNA-directed RNA polymerase, subunit K/omega [Cenarchaeum symbiosum
A]
gi|118194022|gb|ABK76940.1| DNA-directed RNA polymerase, subunit K/omega [Cenarchaeum symbiosum
A]
Length = 155
Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 47/70 (67%), Gaps = 1/70 (1%)
Query: 12 VIKRYERARVLGTRALQIAMCAPVMVELEGET-DPLQIAMKELKARKIPIIIRRYLPDNS 70
V+ R+E+AR++G RALQ+++ AP +E+ + L IAM EL+ R IPI+IRR LP+
Sbjct: 86 VLTRFEKARIMGARALQLSLGAPPFIEIPADARTSLDIAMGELEKRIIPIVIRRVLPNGD 145
Query: 71 YEDWGIDELK 80
Y++ I K
Sbjct: 146 YQNIPISYFK 155
>gi|298674291|ref|YP_003726041.1| RNA polymerase Rpb6 [Methanohalobium evestigatum Z-7303]
gi|298287279|gb|ADI73245.1| RNA polymerase Rpb6 [Methanohalobium evestigatum Z-7303]
Length = 65
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 40/52 (76%)
Query: 15 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYL 66
RYERAR++G RALQI+M AP+++E DPLQ+A++ELK IP+ ++R L
Sbjct: 12 RYERARIIGARALQISMDAPILIENVENLDPLQVAIEELKHGVIPVTVKREL 63
>gi|359416630|ref|ZP_09208926.1| DNA-directed RNA polymerase subunit K [Candidatus Haloredivivus
sp. G17]
gi|358032987|gb|EHK01596.1| DNA-directed RNA polymerase subunit K [Candidatus Haloredivivus
sp. G17]
Length = 57
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 38/53 (71%)
Query: 11 IVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIR 63
+ R+ERAR+LG R+LQIAM APV V+ E DP+ IA KEL+ ++PI ++
Sbjct: 5 MTTTRFERARILGARSLQIAMGAPVFVDAEDNEDPINIAEKELEQDRLPITVK 57
>gi|119719208|ref|YP_919703.1| RNA polymerase Rpb6 [Thermofilum pendens Hrk 5]
gi|171704667|sp|A1RWX0.1|RPOK_THEPD RecName: Full=DNA-directed RNA polymerase subunit K
gi|119524328|gb|ABL77700.1| DNA-directed RNA polymerase, subunit K [Thermofilum pendens Hrk
5]
Length = 81
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 50/70 (71%), Gaps = 1/70 (1%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEGE-TDPLQIAMKELKARKIPIIIRRYLPDNSY 71
+ R+ERAR++G RALQI++ APV++++ E +DP+ IA KEL+ +PII+ R+ P+
Sbjct: 8 LTRFERARIIGIRALQISLGAPVLIQVSEELSDPITIAEKELELGLLPIIVVRWTPEGKI 67
Query: 72 EDWGIDELKI 81
++ I LK+
Sbjct: 68 QEIPIKYLKL 77
>gi|425701180|gb|AFX92342.1| DNA-directed RNA polymerase subunit 6 [Megavirus courdo11]
Length = 349
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 33/72 (45%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 12 VIKRYERARVLGTRALQIAMCA-PVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNS 70
VI YE R++GTR Q+ A P++ +EG P +IA EL+A+ P II+R +P
Sbjct: 198 VITWYEMVRIIGTRTQQLNYDAQPLVKGVEG-LPPAKIAYIELQAKMTPFIIKRKMPGKK 256
Query: 71 YEDWGIDELKII 82
YE+W IDEL+II
Sbjct: 257 YEEWKIDELEII 268
>gi|448825258|ref|YP_007418189.1| DNA-directed RNA polymerase subunit 6 [Megavirus lba]
gi|444236443|gb|AGD92213.1| DNA-directed RNA polymerase subunit 6 [Megavirus lba]
Length = 342
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 33/72 (45%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 12 VIKRYERARVLGTRALQIAMCA-PVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNS 70
VI YE R++GTR Q+ A P++ +EG P +IA EL+A+ P II+R +P
Sbjct: 194 VITWYEMVRIIGTRTQQLNYDAQPLVKGVEG-LPPAKIAYIELQAKMTPFIIKRKMPGKK 252
Query: 71 YEDWGIDELKII 82
YE+W IDEL+II
Sbjct: 253 YEEWKIDELEII 264
>gi|371943582|gb|AEX61410.1| DNA-directed RNA polymerase subunit 6 [Megavirus courdo7]
Length = 349
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 33/72 (45%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 12 VIKRYERARVLGTRALQIAMCA-PVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNS 70
VI YE R++GTR Q+ A P++ +EG P +IA EL+A+ P II+R +P
Sbjct: 198 VITWYEMVRIIGTRTQQLNYEAQPLVKGVEG-LPPAKIAYIELQAKMTPFIIKRKMPGKK 256
Query: 71 YEDWGIDELKII 82
YE+W IDEL+II
Sbjct: 257 YEEWKIDELEII 268
>gi|363540693|ref|YP_004894358.1| mg307 gene product [Megavirus chiliensis]
gi|350611858|gb|AEQ33302.1| DNA-directed RNA polymerase subunit 6 [Megavirus chiliensis]
Length = 339
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 33/72 (45%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 12 VIKRYERARVLGTRALQIAMCA-PVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNS 70
VI YE R++GTR Q+ A P++ +EG P +IA EL+A+ P II+R +P
Sbjct: 194 VITWYEMVRIIGTRTQQLNYDAQPLVKGVEG-LPPAKIAYIELQAKMTPFIIKRKMPGKK 252
Query: 71 YEDWGIDELKII 82
YE+W IDEL+II
Sbjct: 253 YEEWKIDELEII 264
>gi|20095016|ref|NP_614863.1| DNA-directed RNA polymerase subunit K/omega [Methanopyrus
kandleri AV19]
gi|19888279|gb|AAM02793.1| DNA-directed RNA polymerase subunit K/omega [Methanopyrus
kandleri AV19]
Length = 56
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 40/52 (76%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
+ R+E AR++G RALQIAM +PV+VE+EG+ DPL+IA +E +P+++ R
Sbjct: 4 LTRFEIARIVGARALQIAMGSPVLVEVEGDEDPLEIAKREFDEGVVPVVVIR 55
>gi|82000058|sp|Q5UQ32.1|RPO6_MIMIV RecName: Full=DNA-directed RNA polymerase subunit 6
gi|55416832|gb|AAV50482.1| putative RNA polymerase subunit 6 [Acanthamoeba polyphaga
mimivirus]
Length = 396
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Query: 12 VIKRYERARVLGTRALQIAMCA-PVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNS 70
++ YE R+LGTRA Q A P++ +EG P ++A EL A+ I+RR+LP
Sbjct: 192 ILTYYEIVRILGTRAQQFNYGAKPLIKGVEG-MHPAKMAFVELTAKMTSFIVRRHLPGKK 250
Query: 71 YEDWGIDELKII 82
YEDW IDEL +I
Sbjct: 251 YEDWRIDELGMI 262
>gi|329765266|ref|ZP_08256846.1| RNA polymerase Rpb6 [Candidatus Nitrosoarchaeum limnia SFB1]
gi|329138172|gb|EGG42428.1| RNA polymerase Rpb6 [Candidatus Nitrosoarchaeum limnia SFB1]
Length = 177
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Query: 12 VIKRYERARVLGTRALQIAMCAPVMVELEGETD-PLQIAMKELKARKIPIIIRRYLPDNS 70
+ R+E+AR++G RALQ+++ AP + + L IAM+EL+ R IPI IRR LP+
Sbjct: 108 TLTRFEKARIMGARALQLSLGAPTFIPIPKTARISLDIAMEELEQRVIPITIRRVLPNGD 167
Query: 71 YEDWGID 77
Y++ ID
Sbjct: 168 YQNIPID 174
>gi|393796172|ref|ZP_10379536.1| RNA polymerase Rpb6 [Candidatus Nitrosoarchaeum limnia BG20]
Length = 177
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Query: 12 VIKRYERARVLGTRALQIAMCAPVMVELEGETD-PLQIAMKELKARKIPIIIRRYLPDNS 70
+ R+E+AR++G RALQ+++ AP + + L IAM+EL+ R IPI IRR LP+
Sbjct: 108 TLTRFEKARIMGARALQLSLGAPTFIPIPKTARISLDIAMEELEQRVIPITIRRVLPNGD 167
Query: 71 YEDWGID 77
Y++ ID
Sbjct: 168 YQNIPID 174
>gi|327401470|ref|YP_004342309.1| DNA-directed RNA polymerase subunit K [Archaeoglobus veneficus
SNP6]
gi|327316978|gb|AEA47594.1| DNA-directed RNA polymerase subunit K [Archaeoglobus veneficus
SNP6]
Length = 80
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 39/50 (78%), Gaps = 1/50 (2%)
Query: 15 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
R+E+AR++G RALQIAM APV++E + TDPL+IA +E + IPI +RR
Sbjct: 18 RFEKARIIGARALQIAMGAPVLIETD-RTDPLEIAREEFEKGIIPITVRR 66
>gi|449525712|ref|XP_004169860.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC2-like [Cucumis sativus]
Length = 43
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/34 (73%), Positives = 28/34 (82%)
Query: 50 MKELKARKIPIIIRRYLPDNSYEDWGIDELKIID 83
MKEL+ RKIP IRRYLPD SYEDWG+DEL + D
Sbjct: 1 MKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 34
>gi|11498731|ref|NP_069960.1| DNA-directed RNA polymerase subunit K [Archaeoglobus fulgidus DSM
4304]
gi|3122771|sp|O29134.1|RPOK_ARCFU RecName: Full=DNA-directed RNA polymerase subunit K
gi|2649464|gb|AAB90119.1| DNA-directed RNA polymerase, subunit K (rpoK) [Archaeoglobus
fulgidus DSM 4304]
Length = 75
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 40/50 (80%), Gaps = 1/50 (2%)
Query: 15 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
R+E+AR++G RALQIAM APV++E + +T+PL+IA++E IPI +RR
Sbjct: 13 RFEKARIIGARALQIAMGAPVLIETD-KTEPLEIALEEFNRGVIPITVRR 61
>gi|408404833|ref|YP_006862816.1| DNA-directed RNA polymerase subunit K [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408365429|gb|AFU59159.1| DNA-directed RNA polymerase subunit K [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 157
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 49/69 (71%), Gaps = 1/69 (1%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVEL-EGETDPLQIAMKELKARKIPIIIRRYLPDNSY 71
+ R+ERAR+ G+R+LQ+++ AP ++++ E + +A++E+ A+ +PI IRR LP+ Y
Sbjct: 89 LTRFERARITGSRSLQLSLGAPPLIKVPEQAKSSIMLAVEEIDAKALPISIRRILPNGVY 148
Query: 72 EDWGIDELK 80
+D ID +K
Sbjct: 149 QDIPIDWMK 157
>gi|386875249|ref|ZP_10117434.1| hypothetical protein BD31_I1999 [Candidatus Nitrosopumilus salaria
BD31]
gi|386806948|gb|EIJ66382.1| hypothetical protein BD31_I1999 [Candidatus Nitrosopumilus salaria
BD31]
Length = 165
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Query: 12 VIKRYERARVLGTRALQIAMCAPVMVELEGETD-PLQIAMKELKARKIPIIIRRYLPDNS 70
+ R+E+AR++G RALQ+++ AP + + L I+M+EL+ R IPI IRR LP+
Sbjct: 95 TLTRFEKARIMGARALQLSLGAPPFIPIPKNARISLDISMEELEQRVIPITIRRVLPNGD 154
Query: 71 YEDWGID 77
Y++ ID
Sbjct: 155 YQNIPID 161
>gi|330508376|ref|YP_004384804.1| hypothetical protein MCON_2562 [Methanosaeta concilii GP6]
gi|328929184|gb|AEB68986.1| conserved domain protein [Methanosaeta concilii GP6]
Length = 59
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 39/50 (78%), Gaps = 1/50 (2%)
Query: 15 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
RYERAR++G RALQ+ M APV+++ TDPL+IA++E++ IPI ++R
Sbjct: 8 RYERARIVGARALQVFMGAPVLIDTN-HTDPLEIALEEMRLGVIPITVKR 56
>gi|148643493|ref|YP_001274006.1| DNA-directed RNA polymerase, subunit K, RpoK [Methanobrevibacter
smithii ATCC 35061]
gi|222445008|ref|ZP_03607523.1| hypothetical protein METSMIALI_00624 [Methanobrevibacter smithii
DSM 2375]
gi|288869703|ref|ZP_05975839.2| RNA polymerase [Methanobrevibacter smithii DSM 2374]
gi|148552510|gb|ABQ87638.1| DNA-directed RNA polymerase, subunit K, RpoK [Methanobrevibacter
smithii ATCC 35061]
gi|222434573|gb|EEE41738.1| RNA polymerases K / 14 to 18 kDa subunit [Methanobrevibacter
smithii DSM 2375]
gi|288861205|gb|EFC93503.1| RNA polymerase [Methanobrevibacter smithii DSM 2374]
Length = 65
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 41/59 (69%)
Query: 7 FIITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRY 65
F+ T + R+ERAR+LG RA+QI+M A +VE+ DP+ IA +ELKA +P+ + RY
Sbjct: 5 FMTTENLTRFERARLLGARAIQISMGAKPLVEIGDSLDPIDIAYEELKAGVLPLDVIRY 63
>gi|124486059|ref|YP_001030675.1| hypothetical protein Mlab_1239 [Methanocorpusculum labreanum Z]
gi|229564217|sp|A2SSV2.1|RPOK_METLZ RecName: Full=DNA-directed RNA polymerase subunit K
gi|124363600|gb|ABN07408.1| RNA polymerase Rpb6 [Methanocorpusculum labreanum Z]
Length = 62
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 40/56 (71%), Gaps = 1/56 (1%)
Query: 15 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNS 70
RYERAR++G RALQI+M APV+V+ + DPL IA++E A ++PI ++R S
Sbjct: 5 RYERARIVGARALQISMGAPVLVKTV-KIDPLDIALEEFDADRVPITVKRQFGTCS 59
>gi|407462558|ref|YP_006773875.1| RNA polymerase Rpb6 [Candidatus Nitrosopumilus koreensis AR1]
gi|407046180|gb|AFS80933.1| RNA polymerase Rpb6 [Candidatus Nitrosopumilus koreensis AR1]
Length = 169
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Query: 12 VIKRYERARVLGTRALQIAMCAPVMVELEGETD-PLQIAMKELKARKIPIIIRRYLPDNS 70
+ R+E+AR++G RALQ+++ AP + + L I+M+EL+ R IPI IRR LP+
Sbjct: 99 TLTRFEKARIMGARALQLSLGAPPFIPIPKTARISLDISMEELEQRVIPITIRRVLPNGD 158
Query: 71 YEDWGID 77
Y++ ID
Sbjct: 159 YQNIPID 165
>gi|327198714|emb|CCA61415.1| unnamed protein product [Diadromus pulchellus ascovirus 4a]
Length = 119
Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 47/70 (67%), Gaps = 1/70 (1%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYE 72
+ +YE+ARVLG R QI A + VE + +A++EL+ RK+P+I+RR++ +NSY
Sbjct: 51 LTKYEKARVLGERTKQINAGAQIFVERLCDDSDFDVALRELEQRKMPLIVRRHI-NNSYV 109
Query: 73 DWGIDELKII 82
D +++L ++
Sbjct: 110 DISVNKLLLL 119
>gi|336476947|ref|YP_004616088.1| RNA polymerase Rpb6 [Methanosalsum zhilinae DSM 4017]
gi|335930328|gb|AEH60869.1| RNA polymerase Rpb6 [Methanosalsum zhilinae DSM 4017]
Length = 65
Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 38/50 (76%), Gaps = 1/50 (2%)
Query: 15 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
+YERAR++G R+LQIAM APV++ G DPL +AM+EL+ IPI ++R
Sbjct: 8 KYERARIIGARSLQIAMGAPVLINDSG-IDPLYLAMEELEQGVIPITVKR 56
>gi|288932313|ref|YP_003436373.1| RNA polymerase Rpb6 [Ferroglobus placidus DSM 10642]
gi|288894561|gb|ADC66098.1| RNA polymerase Rpb6 [Ferroglobus placidus DSM 10642]
Length = 73
Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 40/50 (80%), Gaps = 1/50 (2%)
Query: 15 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
R+E+AR++G RALQIAM APV++E + +TDPL+IA +E + IPI ++R
Sbjct: 11 RFEKARIIGARALQIAMGAPVLIETD-KTDPLEIAKEEFERGVIPITVKR 59
>gi|27817987|dbj|BAC55751.1| putative DNA-directed RNA polymerase Iia [Oryza sativa Japonica
Group]
Length = 286
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKE 52
+ +YERAR+L TRALQI+M APVMVELEG T PL++ E
Sbjct: 91 MTKYERARILSTRALQISMNAPVMVELEGGTYPLEVEALE 130
>gi|161528440|ref|YP_001582266.1| RNA polymerase Rpb6 [Nitrosopumilus maritimus SCM1]
gi|160339741|gb|ABX12828.1| RNA polymerase Rpb6 [Nitrosopumilus maritimus SCM1]
Length = 182
Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Query: 12 VIKRYERARVLGTRALQIAMCAPVMVELEGETD-PLQIAMKELKARKIPIIIRRYLPDNS 70
+ R+E+AR++G RALQ+++ AP + + L I+M+EL+ R IPI IRR LP+
Sbjct: 112 TLTRFEKARIMGARALQLSLGAPPFIPIPKTARISLDISMEELEQRVIPITIRRVLPNGD 171
Query: 71 YEDWGID 77
Y++ ID
Sbjct: 172 YQNIPID 178
>gi|154151756|ref|YP_001405374.1| RNA polymerase Rpb6 [Methanoregula boonei 6A8]
gi|154000308|gb|ABS56731.1| RNA polymerase Rpb6 [Methanoregula boonei 6A8]
Length = 57
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 39/55 (70%), Gaps = 1/55 (1%)
Query: 10 TIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
T V RYERAR++G RALQI+M AP+++ DPL+IA++E A IPI ++R
Sbjct: 3 TQVYTRYERARIIGARALQISMGAPLLIS-TSRIDPLEIAIEEFNADIIPITVKR 56
>gi|355570781|ref|ZP_09042051.1| RNA polymerase Rpb6 [Methanolinea tarda NOBI-1]
gi|354826063|gb|EHF10279.1| RNA polymerase Rpb6 [Methanolinea tarda NOBI-1]
Length = 56
Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 40/50 (80%), Gaps = 1/50 (2%)
Query: 15 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
RYERAR++G RALQI+M AP++++ + + DPL+IA++E + IPI ++R
Sbjct: 7 RYERARIIGARALQISMGAPLLIKTD-KIDPLEIALEEFQHNVIPITVKR 55
>gi|395645089|ref|ZP_10432949.1| RNA polymerase Rpb6 [Methanofollis liminatans DSM 4140]
gi|395441829|gb|EJG06586.1| RNA polymerase Rpb6 [Methanofollis liminatans DSM 4140]
Length = 57
Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 15 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
RYE+AR++G RALQI+M APV++ G DPL IA++E +IPI +++
Sbjct: 7 RYEKARIVGARALQISMGAPVLIP-TGNVDPLNIALEEFGLDQIPITVKK 55
>gi|355712732|gb|AES04447.1| polymerase II polypeptide F [Mustela putorius furo]
Length = 83
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/32 (81%), Positives = 28/32 (87%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVEL 39
I T + +YERARVLGTRALQIAMCAPVMVEL
Sbjct: 52 ITTPYMTKYERARVLGTRALQIAMCAPVMVEL 83
>gi|424814623|ref|ZP_18239801.1| DNA-directed RNA polymerase, subunit K [Candidatus Nanosalina sp.
J07AB43]
gi|339758239|gb|EGQ43496.1| DNA-directed RNA polymerase, subunit K [Candidatus Nanosalina sp.
J07AB43]
Length = 54
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 34/49 (69%)
Query: 15 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIR 63
RYE+AR+LG R+LQ+A AP VE E PL+I+ +EL K+PI ++
Sbjct: 6 RYEKARILGARSLQLAQGAPAFVEAEEHEKPLEISKRELSQGKLPITVK 54
>gi|383320691|ref|YP_005381532.1| DNA-directed RNA polymerase subunit K [Methanocella conradii
HZ254]
gi|379322061|gb|AFD01014.1| DNA-directed RNA polymerase, subunit K [Methanocella conradii
HZ254]
Length = 82
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 43/62 (69%), Gaps = 2/62 (3%)
Query: 10 TIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDN 69
T+ RYERAR++G RALQI+M APV+++ +P+++A+ EL+ IPI ++R +
Sbjct: 12 TMSYTRYERARIVGARALQISMGAPVLIKDVKSVEPIEVALAELERGLIPITVKR--TNK 69
Query: 70 SY 71
SY
Sbjct: 70 SY 71
>gi|254167901|ref|ZP_04874750.1| RNA polymerases K / 14 to 18 kDa subunit [Aciduliprofundum boonei
T469]
gi|289596604|ref|YP_003483300.1| RNA polymerase Rpb6 [Aciduliprofundum boonei T469]
gi|197623192|gb|EDY35758.1| RNA polymerases K / 14 to 18 kDa subunit [Aciduliprofundum boonei
T469]
gi|289534391|gb|ADD08738.1| RNA polymerase Rpb6 [Aciduliprofundum boonei T469]
Length = 57
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Query: 15 RYERARVLGTRALQIAMCAPVMVEL-EGETDPLQIAMKELKARKIPIIIRR 64
R+E+AR++G RALQI+M APV++ L E DPL IAM E + IPI ++R
Sbjct: 5 RFEKARIIGARALQISMGAPVLIHLPENIVDPLDIAMYEFEKGVIPITVKR 55
>gi|254167851|ref|ZP_04874700.1| RNA polymerases K / 14 to 18 kDa subunit [Aciduliprofundum boonei
T469]
gi|197623142|gb|EDY35708.1| RNA polymerases K / 14 to 18 kDa subunit [Aciduliprofundum boonei
T469]
Length = 57
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Query: 15 RYERARVLGTRALQIAMCAPVMVEL-EGETDPLQIAMKELKARKIPIIIRR 64
R+E+AR++G RALQI+M APV++ L E DPL IAM E + IPI ++R
Sbjct: 5 RFEKARIIGARALQISMGAPVLIHLPEDVADPLDIAMYEFEKGVIPITVKR 55
>gi|407464905|ref|YP_006775787.1| RNA polymerase Rpb6 [Candidatus Nitrosopumilus sp. AR2]
gi|407048093|gb|AFS82845.1| RNA polymerase Rpb6 [Candidatus Nitrosopumilus sp. AR2]
Length = 164
Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEGETD-PLQIAMKELKARKIPIIIRRYLPDNSY 71
+ ++E+AR++G RALQ+++ AP + + L I+M+EL+ R IPI IRR LP+ Y
Sbjct: 95 LTKFEKARIMGARALQLSLGAPPFIPIPKTARISLDISMEELEQRVIPITIRRVLPNGDY 154
Query: 72 EDWGID 77
++ ID
Sbjct: 155 QNIPID 160
>gi|126179751|ref|YP_001047716.1| RNA polymerase Rpb6 [Methanoculleus marisnigri JR1]
gi|125862545|gb|ABN57734.1| DNA-directed RNA polymerase, subunit K [Methanoculleus marisnigri
JR1]
Length = 55
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 39/50 (78%), Gaps = 1/50 (2%)
Query: 15 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
RYERAR++G RALQI+M APV+V+ +T+PL+IA++E IPI ++R
Sbjct: 6 RYERARIIGARALQISMGAPVLVKTP-KTEPLEIALEEYDQDMIPITVKR 54
>gi|222640586|gb|EEE68718.1| hypothetical protein OsJ_27379 [Oryza sativa Japonica Group]
Length = 230
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/36 (69%), Positives = 31/36 (86%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEGETDPLQI 48
+ +YERAR+L TRALQI+M APVMVELEG T PL++
Sbjct: 99 MTKYERARILSTRALQISMNAPVMVELEGGTYPLEV 134
>gi|307352917|ref|YP_003893968.1| RNA polymerase Rpb6 [Methanoplanus petrolearius DSM 11571]
gi|307156150|gb|ADN35530.1| RNA polymerase Rpb6 [Methanoplanus petrolearius DSM 11571]
Length = 56
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 42/56 (75%), Gaps = 1/56 (1%)
Query: 9 ITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
+T RYERAR++G R+LQI+M AP++V+ + + DPL+IA++E + IPI ++R
Sbjct: 1 MTTSYTRYERARIVGARSLQISMGAPLLVKTD-KIDPLEIALEEYQKGVIPITVKR 55
>gi|424812142|ref|ZP_18237382.1| DNA-directed RNA polymerase, subunit K [Candidatus Nanosalinarum
sp. J07AB56]
gi|339756364|gb|EGQ39947.1| DNA-directed RNA polymerase, subunit K [Candidatus Nanosalinarum
sp. J07AB56]
Length = 54
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 39/52 (75%), Gaps = 1/52 (1%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
+ RYE+AR++G R+LQ+AM AP MV+ + +DP++IA EL+ IPI I++
Sbjct: 4 LTRYEKARIVGARSLQLAMGAPRMVDTDS-SDPMEIAEHELEEGNIPITIQK 54
>gi|284161251|ref|YP_003399874.1| RNA polymerase Rpb6 [Archaeoglobus profundus DSM 5631]
gi|284011248|gb|ADB57201.1| RNA polymerase Rpb6 [Archaeoglobus profundus DSM 5631]
Length = 73
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 39/50 (78%), Gaps = 1/50 (2%)
Query: 15 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
R+E+ R++G RALQIA+ APV++E + +TDPL+IA +E + IPI +RR
Sbjct: 11 RFEKVRIIGARALQIALGAPVLIETD-KTDPLEIAREEFERGVIPITVRR 59
>gi|432327998|ref|YP_007246142.1| DNA-directed RNA polymerase, subunit K/omega [Aciduliprofundum
sp. MAR08-339]
gi|432134707|gb|AGB03976.1| DNA-directed RNA polymerase, subunit K/omega [Aciduliprofundum
sp. MAR08-339]
Length = 57
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Query: 15 RYERARVLGTRALQIAMCAPVMVEL-EGETDPLQIAMKELKARKIPIIIRR 64
R+E+AR++G RALQI+M APV++ L E DPL IAM E + IPI ++R
Sbjct: 5 RFEKARIIGARALQISMGAPVLIHLPEDIVDPLDIAMYEFEKGIIPITVKR 55
>gi|432329925|ref|YP_007248068.1| DNA-directed RNA polymerase, subunit K/omega [Methanoregula
formicicum SMSP]
gi|432136634|gb|AGB01561.1| DNA-directed RNA polymerase, subunit K/omega [Methanoregula
formicicum SMSP]
Length = 57
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 36/50 (72%), Gaps = 1/50 (2%)
Query: 15 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
RYERAR++G RALQI+M AP+++ DPL+IA++E IPI ++R
Sbjct: 8 RYERARIIGARALQISMGAPLLITTT-RIDPLEIAIEEFTNNTIPITVKR 56
>gi|282164313|ref|YP_003356698.1| DNA-directed RNA polymerase subunit K [Methanocella paludicola
SANAE]
gi|282156627|dbj|BAI61715.1| DNA-directed RNA polymerase subunit K [Methanocella paludicola
SANAE]
Length = 73
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 38/50 (76%)
Query: 15 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
RYERAR++G RALQI+M APV+++ +P+++A+ EL+ IPI +++
Sbjct: 12 RYERARIVGARALQISMGAPVLMKDANSVEPIEVALAELERGLIPITVKK 61
>gi|219852952|ref|YP_002467384.1| RNA polymerase Rpb6 [Methanosphaerula palustris E1-9c]
gi|219547211|gb|ACL17661.1| RNA polymerase Rpb6 [Methanosphaerula palustris E1-9c]
Length = 56
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 38/50 (76%), Gaps = 1/50 (2%)
Query: 15 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
RYERAR++G R+LQI+M AP++V ++DPL+IA++E IPI ++R
Sbjct: 6 RYERARIIGARSLQISMGAPILVRTT-KSDPLEIALEEYNQGIIPITVKR 54
>gi|340344966|ref|ZP_08668098.1| RNA polymerase Rpb6 [Candidatus Nitrosoarchaeum koreensis MY1]
gi|339520107|gb|EGP93830.1| RNA polymerase Rpb6 [Candidatus Nitrosoarchaeum koreensis MY1]
Length = 177
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Query: 12 VIKRYERARVLGTRALQIAMCAPVMVELEGETD-PLQIAMKELKARKIPIIIRRYLPDNS 70
+ R+E+AR++G RALQ+++ AP + + L I+M+EL+ + IPI IRR LP+
Sbjct: 108 TLTRFEKARIMGARALQLSLGAPPFIPIPKTARISLDISMEELEQKVIPITIRRVLPNGD 167
Query: 71 YEDWGID 77
Y++ I+
Sbjct: 168 YQNIPIE 174
>gi|91774301|ref|YP_566993.1| DNA-directed RNA polymerase, subunit K [Methanococcoides burtonii
DSM 6242]
gi|91713316|gb|ABE53243.1| DNA-directed RNA polymerase subunit K [Methanococcoides burtonii
DSM 6242]
Length = 63
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 37/52 (71%), Gaps = 1/52 (1%)
Query: 15 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYL 66
RYERAR++G R+LQIAM AP+++E + TD L +A E + IPI ++R L
Sbjct: 12 RYERARIIGARSLQIAMGAPILIE-DDNTDALYLATLEFEKGVIPITVKRNL 62
>gi|15790221|ref|NP_280045.1| DNA-directed RNA polymerase subunit K [Halobacterium sp. NRC-1]
gi|169235950|ref|YP_001689150.1| DNA-directed RNA polymerase subunit K [Halobacterium salinarum
R1]
gi|15214259|sp|Q9HQJ0.1|RPOK_HALSA RecName: Full=DNA-directed RNA polymerase subunit K
gi|229564216|sp|B0R4Y7.1|RPOK_HALS3 RecName: Full=DNA-directed RNA polymerase subunit K
gi|10580679|gb|AAG19525.1| DNA-directed RNA polymerase subunit K [Halobacterium sp. NRC-1]
gi|167727016|emb|CAP13802.1| DNA-directed RNA polymerase subunit K [Halobacterium salinarum
R1]
Length = 60
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 37/52 (71%), Gaps = 1/52 (1%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
RYE+AR++G RALQ+A APV+V+ + +T+P+ IA +E A +P +RR
Sbjct: 7 FSRYEKARIIGARALQVAYGAPVLVDTD-QTEPILIAAEEYDADALPFTVRR 57
>gi|294496194|ref|YP_003542687.1| DNA-directed RNA polymerase, subunit K [Methanohalophilus mahii
DSM 5219]
gi|292667193|gb|ADE37042.1| DNA-directed RNA polymerase, subunit K [Methanohalophilus mahii
DSM 5219]
Length = 60
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 15 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
+YERAR++G R+LQIAM APV+++++ D LQIA E + IPI ++R
Sbjct: 8 KYERARIIGARSLQIAMEAPVLIDIDS-NDSLQIAKVEFEKGVIPITVKR 56
>gi|88604127|ref|YP_504305.1| RNA polymerase Rpb6 [Methanospirillum hungatei JF-1]
gi|88189589|gb|ABD42586.1| DNA-directed RNA polymerase, subunit K [Methanospirillum hungatei
JF-1]
Length = 55
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 36/50 (72%), Gaps = 1/50 (2%)
Query: 15 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
RYE+AR++G RALQI+M AP+++ DPL+IAM+E IPI ++R
Sbjct: 6 RYEKARIVGARALQISMGAPILIAT-SSIDPLEIAMEEFDREVIPITVKR 54
>gi|448460448|ref|ZP_21597273.1| DNA-directed RNA polymerase subunit K [Halorubrum lipolyticum DSM
21995]
gi|445807189|gb|EMA57275.1| DNA-directed RNA polymerase subunit K [Halorubrum lipolyticum DSM
21995]
Length = 59
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Query: 14 KRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
RYE+AR+LG RALQ++ APV++E + +T+P+ +A +E A +P +RR
Sbjct: 7 NRYEKARILGARALQVSYGAPVLIETD-QTEPILVAAEEYDAGALPFTVRR 56
>gi|124027790|ref|YP_001013110.1| DNA-directed RNA polymerase subunit K [Hyperthermus butylicus DSM
5456]
gi|123978484|gb|ABM80765.1| DNA-directed RNA polymerase subunit K [Hyperthermus butylicus DSM
5456]
Length = 102
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEG-----ETDPLQIAMKELKARKIPIIIRRYLP 67
+ R+ERARV+G RALQI+M APV++++E DP+ IA KEL+ +P+ I RY
Sbjct: 22 LTRFERARVIGVRALQISMGAPVLIDVEKLPRHVREDPVLIAKKELEIGVLPMTIVRYTR 81
Query: 68 DNSYEDWGIDELKIIDR 84
+ + L ++DR
Sbjct: 82 RGDVQPIPLKWLVVLDR 98
>gi|147921494|ref|YP_684691.1| DNA-directed RNA polymerase, subunit K [Methanocella arvoryzae
MRE50]
gi|110620087|emb|CAJ35365.1| DNA-directed RNA polymerase, subunit K [Methanocella arvoryzae
MRE50]
Length = 88
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 37/50 (74%)
Query: 15 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
RYERAR++G RALQI+M APV+ + +P+++A+ EL+ +PI +R+
Sbjct: 26 RYERARIIGARALQISMGAPVLAKNPKTVEPIEVALLELEQGLVPITVRK 75
>gi|448611947|ref|ZP_21662377.1| DNA-directed RNA polymerase subunit K [Haloferax mucosum ATCC
BAA-1512]
gi|445742708|gb|ELZ94202.1| DNA-directed RNA polymerase subunit K [Haloferax mucosum ATCC
BAA-1512]
Length = 58
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Query: 14 KRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
RYE+AR+LG RALQI+ APV+VE E +T+P+ IA +E A +P ++R
Sbjct: 6 NRYEKARILGARALQISYGAPVLVESE-QTEPILIAAEEYDAGVLPFTVKR 55
>gi|389848209|ref|YP_006350448.1| DNA-directed RNA polymerase subunit K [Haloferax mediterranei
ATCC 33500]
gi|448618417|ref|ZP_21666654.1| DNA-directed RNA polymerase subunit K [Haloferax mediterranei
ATCC 33500]
gi|388245515|gb|AFK20461.1| DNA-directed RNA polymerase subunit K [Haloferax mediterranei
ATCC 33500]
gi|445746788|gb|ELZ98246.1| DNA-directed RNA polymerase subunit K [Haloferax mediterranei
ATCC 33500]
Length = 58
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Query: 14 KRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
RYE+AR+LG RALQ++ APV+VE E +T+P+ IA +E A +P ++R
Sbjct: 6 NRYEKARILGARALQVSYGAPVLVETE-QTEPILIAAEEYDAGVLPFTVKR 55
>gi|323462796|pdb|2Y0S|I Chain I, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase
In P21 Space Group
gi|323462798|pdb|2Y0S|K Chain K, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase
In P21 Space Group
gi|400260750|pdb|4AYB|K Chain K, Rnap At 3.2ang
gi|400260767|pdb|4B1O|K Chain K, Archaeal Rnap-Dna Binary Complex At 4.32ang
gi|400260776|pdb|4B1P|I Chain I, Archaeal Rnap-Dna Binary Complex At 4.32ang
gi|219814445|gb|ACL36496.1| RNA polymerase subunit 6 [Sulfolobus shibatae B12]
Length = 95
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEG--ETDPLQIAMKELKARKIPIIIRRYLPD 68
+ RYE ARV+ RALQ+AM AP ++++ TD + IA +E K +PI IRR LP+
Sbjct: 27 LTRYEIARVISARALQLAMGAPALIDINNISSTDVISIAEEEFKRGVLPITIRRRLPN 84
>gi|435851776|ref|YP_007313362.1| DNA-directed RNA polymerase, subunit K/omega
[Methanomethylovorans hollandica DSM 15978]
gi|433662406|gb|AGB49832.1| DNA-directed RNA polymerase, subunit K/omega
[Methanomethylovorans hollandica DSM 15978]
Length = 62
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 15 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
RYERAR++G R+LQI+M APV+++ G T L IA KEL+ IPI ++R
Sbjct: 8 RYERARIIGARSLQISMGAPVLIDDPG-TQSLYIAKKELELGVIPITVKR 56
>gi|448361730|ref|ZP_21550343.1| RNA polymerase Rpb6 [Natrialba asiatica DSM 12278]
gi|445649410|gb|ELZ02347.1| RNA polymerase Rpb6 [Natrialba asiatica DSM 12278]
Length = 57
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Query: 14 KRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
RYE+AR+LG RALQ++ APV++E E +T+P+ IA +E A +P ++R
Sbjct: 6 NRYEKARILGARALQVSYGAPVLIETE-QTEPILIAAEEYDAGVLPFTVKR 55
>gi|435847143|ref|YP_007309393.1| DNA-directed RNA polymerase, subunit K/omega [Natronococcus
occultus SP4]
gi|433673411|gb|AGB37603.1| DNA-directed RNA polymerase, subunit K/omega [Natronococcus
occultus SP4]
Length = 60
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Query: 14 KRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
RYE+AR+LG RALQI+ APV+VE + +++P+ IA +E A +P +RR
Sbjct: 7 NRYEKARILGARALQISYGAPVLVETD-QSEPILIAAEEYDAGALPFTVRR 56
>gi|448465598|ref|ZP_21598864.1| DNA-directed RNA polymerase subunit K [Halorubrum kocurii JCM
14978]
gi|445814930|gb|EMA64878.1| DNA-directed RNA polymerase subunit K [Halorubrum kocurii JCM
14978]
Length = 59
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Query: 14 KRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
RYE+AR+LG RALQ++ APV++E + +T+P+ +A +E A +P +RR
Sbjct: 7 NRYEKARILGARALQVSYGAPVLIETD-QTEPILVAAEEYDAGALPFTVRR 56
>gi|448739239|ref|ZP_21721254.1| DNA-directed RNA polymerase subunit K [Halococcus thailandensis
JCM 13552]
gi|445799834|gb|EMA50203.1| DNA-directed RNA polymerase subunit K [Halococcus thailandensis
JCM 13552]
Length = 59
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Query: 14 KRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
RYE+AR++G RALQIA APV+VE E T+P+ IA +E A +P ++R
Sbjct: 7 NRYEKARIIGARALQIAYGAPVLVETES-TEPILIAAEEYDADVLPFTVKR 56
>gi|18285650|sp|Q9YDJ9.2|RPOK_AERPE RecName: Full=DNA-directed RNA polymerase subunit K
Length = 89
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELE--GETDPLQIAMKELKARKIPIIIRRYLPDNS 70
+ +YERAR++G RA Q+++ AP +V+ E G +PL IA E+ +P+ I RYLP
Sbjct: 8 LTKYERARIIGVRAFQLSIGAPPLVDPERAGSRNPLDIARYEVDNGILPVSIYRYLPGGG 67
Query: 71 YEDWGIDEL 79
+ + L
Sbjct: 68 GQSLSLSRL 76
>gi|448348759|ref|ZP_21537607.1| RNA polymerase Rpb6 [Natrialba taiwanensis DSM 12281]
gi|448368981|ref|ZP_21555748.1| RNA polymerase Rpb6 [Natrialba aegyptia DSM 13077]
gi|445642420|gb|ELY95488.1| RNA polymerase Rpb6 [Natrialba taiwanensis DSM 12281]
gi|445651524|gb|ELZ04432.1| RNA polymerase Rpb6 [Natrialba aegyptia DSM 13077]
Length = 58
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Query: 14 KRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
RYE+AR+LG RALQ++ APV++E E +T+P+ IA +E A +P ++R
Sbjct: 7 NRYEKARILGARALQVSYGAPVLIETE-QTEPILIAAEEYDAGVLPFTVKR 56
>gi|448578445|ref|ZP_21643880.1| DNA-directed RNA polymerase subunit K [Haloferax larsenii JCM
13917]
gi|445726986|gb|ELZ78602.1| DNA-directed RNA polymerase subunit K [Haloferax larsenii JCM
13917]
Length = 57
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Query: 14 KRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
RYE+AR+LG RALQ++ APV+VE E +T+P+ IA +E A +P ++R
Sbjct: 5 NRYEKARILGARALQVSYGAPVLVESE-QTEPILIAAEEYDAGVLPFTVKR 54
>gi|15678071|ref|NP_275185.1| DNA-dependent RNA polymerase subunit K [Methanothermobacter
thermautotrophicus str. Delta H]
gi|3122767|sp|O26148.1|RPOK_METTH RecName: Full=DNA-directed RNA polymerase subunit K
gi|2621077|gb|AAB84549.1| DNA-dependent RNA polymerase, subunit K [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 61
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 39/52 (75%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
+ R+ERAR++G RALQI+M A +VE++ DP+ IA KEL+ + +P+ +RR
Sbjct: 8 LTRFERARLIGARALQISMGARPLVEIKESLDPVDIARKELEKKVMPLDVRR 59
>gi|14601067|ref|NP_147593.1| DNA-directed RNA polymerase subunit K [Aeropyrum pernix K1]
gi|5104583|dbj|BAA79898.1| DNA-directed RNA polymerase subunit K [Aeropyrum pernix K1]
Length = 103
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELE--GETDPLQIAMKELKARKIPIIIRRYLPDNS 70
+ +YERAR++G RA Q+++ AP +V+ E G +PL IA E+ +P+ I RYLP
Sbjct: 22 LTKYERARIIGVRAFQLSIGAPPLVDPERAGSRNPLDIARYEVDNGILPVSIYRYLPGGG 81
Query: 71 YEDWGIDEL 79
+ + L
Sbjct: 82 GQSLSLSRL 90
>gi|374628600|ref|ZP_09700985.1| DNA-directed RNA polymerase, subunit K [Methanoplanus limicola
DSM 2279]
gi|373906713|gb|EHQ34817.1| DNA-directed RNA polymerase, subunit K [Methanoplanus limicola
DSM 2279]
Length = 55
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 39/50 (78%), Gaps = 1/50 (2%)
Query: 15 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
RYERAR++G R+LQI+M AP++V+ + DPL+IA++E + IPI ++R
Sbjct: 6 RYERARIVGARSLQISMGAPLLVKTD-RIDPLEIALEEYELGVIPITVKR 54
>gi|399576708|ref|ZP_10770463.1| DNA-directed RNA polymerase subunit K [Halogranum salarium B-1]
gi|399238152|gb|EJN59081.1| DNA-directed RNA polymerase subunit K [Halogranum salarium B-1]
Length = 60
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Query: 14 KRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
RYE+AR+LG RALQ++ APV+++ E ET+P+ IA +E A +P ++R
Sbjct: 8 NRYEKARILGARALQVSYGAPVLIDTE-ETEPILIAAEEYDAGVLPFTVKR 57
>gi|448474330|ref|ZP_21602189.1| RNA polymerase Rpb6 [Halorubrum aidingense JCM 13560]
gi|445817637|gb|EMA67506.1| RNA polymerase Rpb6 [Halorubrum aidingense JCM 13560]
Length = 59
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Query: 14 KRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
RYE+AR+LG RALQ++ APV++E +T+P+ +A +E A +P +RR
Sbjct: 7 NRYEKARILGARALQVSYGAPVLIET-NQTEPILVAAEEYDAGALPFTVRR 56
>gi|448409414|ref|ZP_21574712.1| RNA polymerase Rpb6 [Halosimplex carlsbadense 2-9-1]
gi|445673017|gb|ELZ25584.1| RNA polymerase Rpb6 [Halosimplex carlsbadense 2-9-1]
Length = 58
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Query: 14 KRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
RYE+AR++G RALQ+A APV+V+ E +T P+ IA +E + +P +RR
Sbjct: 6 NRYEKARIIGARALQVAYGAPVLVDTE-QTQPILIAAEEYDSGALPFTVRR 55
>gi|448400366|ref|ZP_21571358.1| RNA polymerase Rpb6 [Haloterrigena limicola JCM 13563]
gi|445667389|gb|ELZ20032.1| RNA polymerase Rpb6 [Haloterrigena limicola JCM 13563]
Length = 61
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Query: 14 KRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
RYE+AR+LG RALQ++ APV++E E +T+P+ IA +E A +P ++R
Sbjct: 7 NRYEKARILGARALQVSYGAPVLIETE-QTEPILIAAEEYDAGVLPFTVKR 56
>gi|452207488|ref|YP_007487610.1| DNA-directed RNA polymerase subunit K [Natronomonas moolapensis
8.8.11]
gi|452083588|emb|CCQ36900.1| DNA-directed RNA polymerase subunit K [Natronomonas moolapensis
8.8.11]
Length = 57
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Query: 14 KRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
RYE+AR+LG RALQ++ APV+++ + +T+P+ +A +E A +P +RR
Sbjct: 5 NRYEKARILGARALQVSYGAPVLIDTD-QTEPILVAAEEYDANALPFTVRR 54
>gi|116753792|ref|YP_842910.1| RNA polymerase Rpb6 [Methanosaeta thermophila PT]
gi|121694449|sp|A0B6E6.1|RPOK_METTP RecName: Full=DNA-directed RNA polymerase subunit K
gi|116665243|gb|ABK14270.1| DNA-directed RNA polymerase, subunit K [Methanosaeta thermophila
PT]
Length = 60
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 38/50 (76%), Gaps = 1/50 (2%)
Query: 15 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
R+ERAR++G RALQI M APV++ + DPL+IA++E++ IPI ++R
Sbjct: 8 RFERARIVGARALQIFMGAPVLIRTD-SIDPLEIALEEMRLGVIPITVKR 56
>gi|409096140|ref|ZP_11216164.1| DNA-directed RNA polymerase subunit K [Thermococcus zilligii AN1]
Length = 57
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 35/50 (70%)
Query: 15 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
R+E+AR++G RALQIAM APV+V++ PLQ A+ E + IPI + R
Sbjct: 6 RFEKARIIGARALQIAMGAPVLVDVPEGATPLQAAIVEFEMGVIPITVVR 55
>gi|333987640|ref|YP_004520247.1| RNA polymerase Rpb6 [Methanobacterium sp. SWAN-1]
gi|333825784|gb|AEG18446.1| RNA polymerase Rpb6 [Methanobacterium sp. SWAN-1]
Length = 57
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 36/52 (69%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
+ R+E+ARV+G RALQ++M A V++ DP+ IA ELK K+P+ ++R
Sbjct: 6 LTRFEKARVIGARALQLSMGAKPQVDVSASIDPIDIATLELKKNKLPLDVKR 57
>gi|448431133|ref|ZP_21584961.1| DNA-directed RNA polymerase subunit K [Halorubrum tebenquichense
DSM 14210]
gi|448491309|ref|ZP_21608250.1| DNA-directed RNA polymerase subunit K [Halorubrum californiensis
DSM 19288]
gi|445688280|gb|ELZ40545.1| DNA-directed RNA polymerase subunit K [Halorubrum tebenquichense
DSM 14210]
gi|445693080|gb|ELZ45242.1| DNA-directed RNA polymerase subunit K [Halorubrum californiensis
DSM 19288]
Length = 58
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Query: 14 KRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
RYE+AR+LG RALQ++ APV+++ + +T+P+ +A +E A +P +RR
Sbjct: 7 NRYEKARILGARALQVSYGAPVLIDTD-QTEPILVAAEEYDAGALPFTVRR 56
>gi|222480236|ref|YP_002566473.1| RNA polymerase Rpb6 [Halorubrum lacusprofundi ATCC 49239]
gi|448440163|ref|ZP_21588411.1| DNA-directed RNA polymerase subunit K [Halorubrum saccharovorum
DSM 1137]
gi|254765434|sp|B9LPW5.1|RPOK_HALLT RecName: Full=DNA-directed RNA polymerase subunit K
gi|222453138|gb|ACM57403.1| RNA polymerase Rpb6 [Halorubrum lacusprofundi ATCC 49239]
gi|445690680|gb|ELZ42890.1| DNA-directed RNA polymerase subunit K [Halorubrum saccharovorum
DSM 1137]
Length = 59
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Query: 14 KRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
RYE+AR+LG RALQ++ APV+++ + +T+P+ +A +E A +P +RR
Sbjct: 7 NRYEKARILGARALQVSYGAPVLIDTD-QTEPILVAAEEYDAGALPFTVRR 56
>gi|433590982|ref|YP_007280478.1| DNA-directed RNA polymerase, subunit K/omega [Natrinema
pellirubrum DSM 15624]
gi|448334515|ref|ZP_21523690.1| RNA polymerase Rpb6 [Natrinema pellirubrum DSM 15624]
gi|448385457|ref|ZP_21563963.1| RNA polymerase Rpb6 [Haloterrigena thermotolerans DSM 11522]
gi|433305762|gb|AGB31574.1| DNA-directed RNA polymerase, subunit K/omega [Natrinema
pellirubrum DSM 15624]
gi|445619847|gb|ELY73364.1| RNA polymerase Rpb6 [Natrinema pellirubrum DSM 15624]
gi|445656952|gb|ELZ09784.1| RNA polymerase Rpb6 [Haloterrigena thermotolerans DSM 11522]
Length = 60
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Query: 14 KRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
RYE+AR+LG RALQ++ APV++E E +T P+ IA +E A +P ++R
Sbjct: 6 NRYEKARILGARALQVSYGAPVLIETE-QTQPILIAAEEYDAGVLPFTVKR 55
>gi|397772876|ref|YP_006540422.1| RNA polymerase Rpb6 [Natrinema sp. J7-2]
gi|448337136|ref|ZP_21526218.1| RNA polymerase Rpb6 [Natrinema pallidum DSM 3751]
gi|448340560|ref|ZP_21529531.1| RNA polymerase Rpb6 [Natrinema gari JCM 14663]
gi|448346275|ref|ZP_21535161.1| RNA polymerase Rpb6 [Natrinema altunense JCM 12890]
gi|397681969|gb|AFO56346.1| RNA polymerase Rpb6 [Natrinema sp. J7-2]
gi|445626482|gb|ELY79825.1| RNA polymerase Rpb6 [Natrinema pallidum DSM 3751]
gi|445629993|gb|ELY83263.1| RNA polymerase Rpb6 [Natrinema gari JCM 14663]
gi|445632864|gb|ELY86070.1| RNA polymerase Rpb6 [Natrinema altunense JCM 12890]
Length = 61
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Query: 14 KRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
RYE+AR+LG RALQ++ APV++E E +T P+ IA +E A +P ++R
Sbjct: 7 NRYEKARILGARALQVSYGAPVLIETE-QTQPILIAAEEYDAGVLPFTVKR 56
>gi|385773256|ref|YP_005645822.1| RNA polymerase Rpb6 [Sulfolobus islandicus HVE10/4]
gi|385775890|ref|YP_005648458.1| RNA polymerase Rpb6 [Sulfolobus islandicus REY15A]
gi|323474638|gb|ADX85244.1| RNA polymerase Rpb6 [Sulfolobus islandicus REY15A]
gi|323477370|gb|ADX82608.1| RNA polymerase Rpb6 [Sulfolobus islandicus HVE10/4]
Length = 87
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEG--ETDPLQIAMKELKARKIPIIIRRYLPD 68
+ RYE ARV+ RALQ+AM AP ++++ TD + IA +E K +PI IRR LP+
Sbjct: 19 LTRYEIARVISARALQLAMGAPALIDINNISLTDVISIAEEEFKRGVLPITIRRRLPN 76
>gi|354610850|ref|ZP_09028806.1| DNA-directed RNA polymerase subunit K [Halobacterium sp. DL1]
gi|353195670|gb|EHB61172.1| DNA-directed RNA polymerase subunit K [Halobacterium sp. DL1]
Length = 59
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 37/52 (71%), Gaps = 1/52 (1%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
RYE+AR++G RALQ++ APV+V+ + +T+P+ IA +E A +P +RR
Sbjct: 7 FNRYEKARIIGARALQVSYGAPVLVDTD-QTEPILIAAEEYDAEVLPFTVRR 57
>gi|237823483|pdb|2WAQ|K Chain K, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
gi|237823498|pdb|2WB1|I Chain I, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
gi|237823500|pdb|2WB1|K Chain K, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
Length = 95
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEG--ETDPLQIAMKELKARKIPIIIRRYLPD 68
+ RYE ARV+ RALQ+AM AP ++++ TD + IA +E + +PI IRR LP+
Sbjct: 27 LTRYEIARVISARALQLAMGAPALIDINNLSSTDVISIAEEEFRRGVLPITIRRRLPN 84
>gi|15897794|ref|NP_342399.1| DNA-directed RNA polymerase subunit K [Sulfolobus solfataricus
P2]
gi|284175597|ref|ZP_06389566.1| DNA-directed RNA polymerase subunit K [Sulfolobus solfataricus
98/2]
gi|384434343|ref|YP_005643701.1| RNA polymerase Rpb6 [Sulfolobus solfataricus 98/2]
gi|15214257|sp|Q97ZJ9.1|RPOK_SULSO RecName: Full=DNA-directed RNA polymerase subunit K
gi|167744888|pdb|2PMZ|K Chain K, Archaeal Rna Polymerase From Sulfolobus Solfataricus
gi|167744899|pdb|2PMZ|W Chain W, Archaeal Rna Polymerase From Sulfolobus Solfataricus
gi|239782151|pdb|3HKZ|K Chain K, The X-Ray Crystal Structure Of Rna Polymerase From
Archaea
gi|239782164|pdb|3HKZ|U Chain U, The X-Ray Crystal Structure Of Rna Polymerase From
Archaea
gi|13814087|gb|AAK41189.1| DNA-directed RNA polymerase subunit K (rpoK) [Sulfolobus
solfataricus P2]
gi|261602497|gb|ACX92100.1| RNA polymerase Rpb6 [Sulfolobus solfataricus 98/2]
Length = 95
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEG--ETDPLQIAMKELKARKIPIIIRRYLPD 68
+ RYE ARV+ RALQ+AM AP ++++ TD + IA +E + +PI IRR LP+
Sbjct: 27 LTRYEIARVISARALQLAMGAPALIDINNLSSTDVISIAEEEFRRGVLPITIRRRLPN 84
>gi|448425444|ref|ZP_21582774.1| DNA-directed RNA polymerase subunit K [Halorubrum terrestre JCM
10247]
gi|448453311|ref|ZP_21593754.1| DNA-directed RNA polymerase subunit K [Halorubrum litoreum JCM
13561]
gi|448485421|ref|ZP_21606646.1| DNA-directed RNA polymerase subunit K [Halorubrum arcis JCM
13916]
gi|448504674|ref|ZP_21614015.1| DNA-directed RNA polymerase subunit K [Halorubrum distributum JCM
9100]
gi|448519091|ref|ZP_21617867.1| DNA-directed RNA polymerase subunit K [Halorubrum distributum JCM
10118]
gi|445680515|gb|ELZ32958.1| DNA-directed RNA polymerase subunit K [Halorubrum terrestre JCM
10247]
gi|445701884|gb|ELZ53856.1| DNA-directed RNA polymerase subunit K [Halorubrum distributum JCM
9100]
gi|445704107|gb|ELZ56025.1| DNA-directed RNA polymerase subunit K [Halorubrum distributum JCM
10118]
gi|445807631|gb|EMA57714.1| DNA-directed RNA polymerase subunit K [Halorubrum litoreum JCM
13561]
gi|445818075|gb|EMA67942.1| DNA-directed RNA polymerase subunit K [Halorubrum arcis JCM
13916]
Length = 58
Score = 51.2 bits (121), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Query: 14 KRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
RYE+AR+LG RALQ++ APV+++ + +T+P+ +A +E A +P +RR
Sbjct: 7 NRYEKARILGARALQVSYGAPVLIDTD-QTEPILVAAEEYDAGALPFTVRR 56
>gi|448330857|ref|ZP_21520133.1| RNA polymerase Rpb6 [Natrinema versiforme JCM 10478]
gi|445610693|gb|ELY64462.1| RNA polymerase Rpb6 [Natrinema versiforme JCM 10478]
Length = 61
Score = 51.2 bits (121), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 14 KRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
RYE+AR+LG RALQI+ APV+ E E +T P+ IA +E A +P ++R
Sbjct: 7 NRYEKARILGARALQISYGAPVLTETE-QTQPILIAAEEYDAGVLPFTVKR 56
>gi|227827586|ref|YP_002829366.1| DNA-directed RNA polymerase subunit K [Sulfolobus islandicus
M.14.25]
gi|229584790|ref|YP_002843292.1| DNA-directed RNA polymerase subunit K [Sulfolobus islandicus
M.16.27]
gi|238619744|ref|YP_002914570.1| DNA-directed RNA polymerase subunit K [Sulfolobus islandicus
M.16.4]
gi|259494221|sp|C3N5H2.1|RPOK_SULIA RecName: Full=DNA-directed RNA polymerase subunit K
gi|259494222|sp|C4KH38.1|RPOK_SULIK RecName: Full=DNA-directed RNA polymerase subunit K
gi|259494223|sp|C3MUV8.1|RPOK_SULIM RecName: Full=DNA-directed RNA polymerase subunit K
gi|227459382|gb|ACP38068.1| RNA polymerase Rpb6 [Sulfolobus islandicus M.14.25]
gi|228019840|gb|ACP55247.1| RNA polymerase Rpb6 [Sulfolobus islandicus M.16.27]
gi|238380814|gb|ACR41902.1| RNA polymerase Rpb6 [Sulfolobus islandicus M.16.4]
Length = 95
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEG--ETDPLQIAMKELKARKIPIIIRRYLPD 68
+ RYE ARV+ RALQ+AM AP ++++ TD + IA +E K +PI IRR LP+
Sbjct: 27 LTRYEIARVISARALQLAMGAPALIDINNISLTDVISIAEEEFKRGVLPITIRRRLPN 84
>gi|16082173|ref|NP_394616.1| DNA-directed RNA polymerase subunit K [Thermoplasma acidophilum
DSM 1728]
gi|13633844|sp|Q9HJ14.1|RPOK_THEAC RecName: Full=DNA-directed RNA polymerase subunit K
gi|10640471|emb|CAC12285.1| probable DNA-directed RNA polymerase, chain K (rpok)
[Thermoplasma acidophilum]
Length = 61
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 38/51 (74%), Gaps = 1/51 (1%)
Query: 15 RYERARVLGTRALQIAMCAPVMVEL-EGETDPLQIAMKELKARKIPIIIRR 64
++E+AR++G RALQIAM APV++++ + DP+ IAM E + IPI I++
Sbjct: 5 KFEKARIIGARALQIAMGAPVIIDVPKNIIDPVDIAMLEFENNVIPITIKK 55
>gi|448391694|ref|ZP_21566789.1| RNA polymerase Rpb6 [Haloterrigena salina JCM 13891]
gi|445665106|gb|ELZ17784.1| RNA polymerase Rpb6 [Haloterrigena salina JCM 13891]
Length = 61
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Query: 14 KRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
RYE+AR+LG RALQI+ APV+VE + +++P+ IA +E A +P ++R
Sbjct: 7 NRYEKARILGARALQISYGAPVLVETD-QSEPILIAAEEYDAEVLPFTVKR 56
>gi|448592483|ref|ZP_21651590.1| DNA-directed RNA polymerase subunit K [Haloferax elongans ATCC
BAA-1513]
gi|445731488|gb|ELZ83072.1| DNA-directed RNA polymerase subunit K [Haloferax elongans ATCC
BAA-1513]
Length = 57
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Query: 14 KRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
RYE+AR+LG RALQ++ APV+VE + +T+P+ IA +E A +P ++R
Sbjct: 5 NRYEKARILGARALQVSYGAPVLVESD-QTEPILIAAEEYDAGVLPFTVKR 54
>gi|227830274|ref|YP_002832054.1| DNA-directed RNA polymerase subunit K [Sulfolobus islandicus
L.S.2.15]
gi|229579099|ref|YP_002837497.1| DNA-directed RNA polymerase subunit K [Sulfolobus islandicus
Y.G.57.14]
gi|229582160|ref|YP_002840559.1| DNA-directed RNA polymerase subunit K [Sulfolobus islandicus
Y.N.15.51]
gi|284997697|ref|YP_003419464.1| RNA polymerase Rpb6 [Sulfolobus islandicus L.D.8.5]
gi|227456722|gb|ACP35409.1| RNA polymerase Rpb6 [Sulfolobus islandicus L.S.2.15]
gi|228009813|gb|ACP45575.1| RNA polymerase Rpb6 [Sulfolobus islandicus Y.G.57.14]
gi|228012876|gb|ACP48637.1| RNA polymerase Rpb6 [Sulfolobus islandicus Y.N.15.51]
gi|284445592|gb|ADB87094.1| RNA polymerase Rpb6 [Sulfolobus islandicus L.D.8.5]
Length = 87
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEG--ETDPLQIAMKELKARKIPIIIRRYLPD 68
+ RYE ARV+ RALQ+AM AP ++++ TD + IA +E K +PI IRR LP+
Sbjct: 19 LTRYEIARVISARALQLAMGAPALIDINNISLTDVISIAEEEFKRGVLPITIRRRLPN 76
>gi|257076296|ref|ZP_05570657.1| DNA-directed RNA polymerase subunit K [Ferroplasma acidarmanus
fer1]
Length = 56
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 40/55 (72%), Gaps = 1/55 (1%)
Query: 11 IVIKRYERARVLGTRALQIAMCAPVMVELEGET-DPLQIAMKELKARKIPIIIRR 64
+++ ++E+AR++G RALQIAM APV++++ + DP+ IA+ E IPI IRR
Sbjct: 1 MMLTKFEKARIIGARALQIAMGAPVILDVSPDMIDPIDIAIFEFDNGVIPITIRR 55
>gi|448583264|ref|ZP_21646620.1| DNA-directed RNA polymerase subunit K [Haloferax gibbonsii ATCC
33959]
gi|445729493|gb|ELZ81088.1| DNA-directed RNA polymerase subunit K [Haloferax gibbonsii ATCC
33959]
Length = 57
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Query: 14 KRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
RYE+AR+LG RALQ++ APV+V+ E +T+P+ IA +E A +P ++R
Sbjct: 5 NRYEKARILGARALQVSYGAPVLVDSE-QTEPILIAAEEYDAGVLPFTVKR 54
>gi|257388637|ref|YP_003178410.1| RNA polymerase Rpb6 [Halomicrobium mukohataei DSM 12286]
gi|257170944|gb|ACV48703.1| RNA polymerase Rpb6 [Halomicrobium mukohataei DSM 12286]
Length = 58
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Query: 14 KRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
RYE+AR++G RALQ+A APV+++ + +T P+ IA +E A +P +RR
Sbjct: 6 NRYEKARIIGARALQVAFGAPVLIDTD-QTQPILIAAEEYDAGVLPFTVRR 55
>gi|448565314|ref|ZP_21636181.1| DNA-directed RNA polymerase subunit K [Haloferax prahovense DSM
18310]
gi|445715058|gb|ELZ66814.1| DNA-directed RNA polymerase subunit K [Haloferax prahovense DSM
18310]
Length = 58
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Query: 14 KRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
RYE+AR+LG RALQ++ APV+V+ E +T+P+ IA +E A +P ++R
Sbjct: 6 NRYEKARILGARALQVSYGAPVLVDSE-QTEPILIAAEEYDAGVLPFTVKR 55
>gi|76802064|ref|YP_327072.1| DNA-directed RNA polymerase subunit K [Natronomonas pharaonis DSM
2160]
gi|76557929|emb|CAI49513.1| DNA-directed RNA polymerase subunit K [Natronomonas pharaonis DSM
2160]
Length = 57
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Query: 14 KRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
RYE+AR+LG RALQ++ APV++E + +T+P+ +A +E A +P + R
Sbjct: 5 NRYEKARILGARALQVSYGAPVLIETD-QTEPILVAAEEYDADALPFTVHR 54
>gi|448314279|ref|ZP_21503979.1| DNA-directed RNA polymerase subunit K [Natronolimnobius
innermongolicus JCM 12255]
gi|445595539|gb|ELY49645.1| DNA-directed RNA polymerase subunit K [Natronolimnobius
innermongolicus JCM 12255]
Length = 58
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Query: 14 KRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
RYE+AR+LG RALQ++ APV+VE + ++ P+ IA +E A +P ++R
Sbjct: 6 NRYEKARILGARALQVSYGAPVLVETD-QSQPILIAAEEYDAGALPFTVKR 55
>gi|304314292|ref|YP_003849439.1| DNA-directed RNA polymerase subunit K [Methanothermobacter
marburgensis str. Marburg]
gi|302587751|gb|ADL58126.1| DNA-directed RNA polymerase subunit K [Methanothermobacter
marburgensis str. Marburg]
Length = 59
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 38/52 (73%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
+ R+ERAR++G RALQI+M A V+++ DP+ IA KEL+ + +P+ +RR
Sbjct: 6 LTRFERARLIGARALQISMGARPQVDIQESLDPVDIARKELEKKVMPLDVRR 57
>gi|292656893|ref|YP_003536790.1| DNA-directed RNA polymerase subunit K [Haloferax volcanii DS2]
gi|433418970|ref|ZP_20405129.1| DNA-directed RNA polymerase subunit K [Haloferax sp. BAB2207]
gi|448290893|ref|ZP_21482038.1| DNA-directed RNA polymerase subunit K [Haloferax volcanii DS2]
gi|448546353|ref|ZP_21626517.1| DNA-directed RNA polymerase subunit K [Haloferax sp. ATCC
BAA-646]
gi|448548340|ref|ZP_21627607.1| DNA-directed RNA polymerase subunit K [Haloferax sp. ATCC
BAA-645]
gi|448557534|ref|ZP_21632723.1| DNA-directed RNA polymerase subunit K [Haloferax sp. ATCC
BAA-644]
gi|448568225|ref|ZP_21637802.1| DNA-directed RNA polymerase subunit K [Haloferax lucentense DSM
14919]
gi|448600834|ref|ZP_21656213.1| DNA-directed RNA polymerase subunit K [Haloferax alexandrinus JCM
10717]
gi|448602313|ref|ZP_21656369.1| DNA-directed RNA polymerase subunit K [Haloferax sulfurifontis
ATCC BAA-897]
gi|448622868|ref|ZP_21669517.1| DNA-directed RNA polymerase subunit K [Haloferax denitrificans
ATCC 35960]
gi|291371640|gb|ADE03867.1| DNA-directed RNA polymerase subunit K [Haloferax volcanii DS2]
gi|432199578|gb|ELK55739.1| DNA-directed RNA polymerase subunit K [Haloferax sp. BAB2207]
gi|445577946|gb|ELY32366.1| DNA-directed RNA polymerase subunit K [Haloferax volcanii DS2]
gi|445702806|gb|ELZ54746.1| DNA-directed RNA polymerase subunit K [Haloferax sp. ATCC
BAA-646]
gi|445714091|gb|ELZ65858.1| DNA-directed RNA polymerase subunit K [Haloferax sp. ATCC
BAA-644]
gi|445714435|gb|ELZ66197.1| DNA-directed RNA polymerase subunit K [Haloferax sp. ATCC
BAA-645]
gi|445727175|gb|ELZ78789.1| DNA-directed RNA polymerase subunit K [Haloferax lucentense DSM
14919]
gi|445734847|gb|ELZ86403.1| DNA-directed RNA polymerase subunit K [Haloferax alexandrinus JCM
10717]
gi|445747828|gb|ELZ99282.1| DNA-directed RNA polymerase subunit K [Haloferax sulfurifontis
ATCC BAA-897]
gi|445753376|gb|EMA04793.1| DNA-directed RNA polymerase subunit K [Haloferax denitrificans
ATCC 35960]
Length = 58
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Query: 14 KRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
RYE+AR+LG RALQ++ APV+V+ E +T+P+ IA +E A +P ++R
Sbjct: 6 NRYEKARILGARALQVSYGAPVLVDSE-QTEPILIAAEEYDAGVLPFTVKR 55
>gi|389852935|ref|YP_006355169.1| DNA-directed RNA polymerase subunit K [Pyrococcus sp. ST04]
gi|388250241|gb|AFK23094.1| DNA-directed RNA polymerase subunit K [Pyrococcus sp. ST04]
Length = 57
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 36/50 (72%)
Query: 15 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
R+E+AR++G RALQIAM APV++++ T PL+ A+ E + IPI + R
Sbjct: 6 RFEKARIIGARALQIAMGAPVLIDVPEGTTPLEAAILEFEKGIIPITVIR 55
>gi|322369529|ref|ZP_08044094.1| RNA polymerase Rpb6 [Haladaptatus paucihalophilus DX253]
gi|320551261|gb|EFW92910.1| RNA polymerase Rpb6 [Haladaptatus paucihalophilus DX253]
Length = 60
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Query: 14 KRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
RYE+AR+LG RALQ++ APV++E + E+ P+ IA +E A +P +RR
Sbjct: 7 SRYEKARILGARALQVSYGAPVLIETQ-ESQPILIAAEEYDAGVLPFSVRR 56
>gi|345004802|ref|YP_004807655.1| DNA-directed RNA polymerase subunit K [halophilic archaeon DL31]
gi|344320428|gb|AEN05282.1| DNA-directed RNA polymerase subunit K [halophilic archaeon DL31]
Length = 58
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 9 ITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
+++ RYE+AR++G RALQ++ APV+V+ E T+P IA +E A +P +RR
Sbjct: 1 MSMEFNRYEKARIIGARALQLSYGAPVLVDTE-TTEPYLIAAEEYDADVLPFTVRR 55
>gi|284165817|ref|YP_003404096.1| RNA polymerase Rpb6 [Haloterrigena turkmenica DSM 5511]
gi|284015472|gb|ADB61423.1| RNA polymerase Rpb6 [Haloterrigena turkmenica DSM 5511]
Length = 61
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Query: 14 KRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
RYE+AR+LG RALQI+ APV+V+ + +++P+ IA +E A +P ++R
Sbjct: 7 NRYEKARILGARALQISYGAPVLVDTD-QSEPILIAAEEYDAGALPFTVKR 56
>gi|300711106|ref|YP_003736920.1| RNA polymerase Rpb6 [Halalkalicoccus jeotgali B3]
gi|448296795|ref|ZP_21486846.1| DNA-directed RNA polymerase subunit K [Halalkalicoccus jeotgali
B3]
gi|299124789|gb|ADJ15128.1| RNA polymerase Rpb6 [Halalkalicoccus jeotgali B3]
gi|445580778|gb|ELY35152.1| DNA-directed RNA polymerase subunit K [Halalkalicoccus jeotgali
B3]
Length = 59
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 37/52 (71%), Gaps = 1/52 (1%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
RYE+AR+LG RALQ++ APV++E + +++P+ IA +E A +P ++R
Sbjct: 6 FSRYEKARILGARALQVSYGAPVLIETD-QSEPILIAAEEYDAGALPFTVKR 56
>gi|13542056|ref|NP_111744.1| DNA-directed RNA polymerase subunit K [Thermoplasma volcanium
GSS1]
gi|15214256|sp|P58232.1|RPOK_THEVO RecName: Full=DNA-directed RNA polymerase subunit K
gi|14325487|dbj|BAB60391.1| DNA-directed RNA polymerase K [Thermoplasma volcanium GSS1]
Length = 61
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Query: 15 RYERARVLGTRALQIAMCAPVMVEL-EGETDPLQIAMKELKARKIPIIIRR 64
++E+AR++G RALQIAM APV++++ + DP+ IA E + IPI I+R
Sbjct: 5 KFEKARIIGARALQIAMGAPVIIDIPKNVIDPVDIATIEFENNVIPITIKR 55
>gi|57641433|ref|YP_183911.1| DNA-directed RNA polymerase subunit K [Thermococcus kodakarensis
KOD1]
gi|73917887|sp|Q5JJD0.1|RPOK_PYRKO RecName: Full=DNA-directed RNA polymerase subunit K
gi|57159757|dbj|BAD85687.1| DNA-directed RNA polymerase, subunit K [Thermococcus kodakarensis
KOD1]
Length = 57
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 35/50 (70%)
Query: 15 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
R+E+AR++G RALQIAM APV++++ PLQ A+ E + IPI + R
Sbjct: 6 RFEKARIIGARALQIAMGAPVLIDVPEGITPLQAALLEFEKGVIPITVIR 55
>gi|340505845|gb|EGR32130.1| zinc ran-binding domain protein 3 [Ichthyophthirius multifiliis]
Length = 464
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/46 (52%), Positives = 33/46 (71%), Gaps = 1/46 (2%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEG-ETDPLQIAMKELKARK 57
+ +YE+ARV+GTRALQIA +P+ V+ E E DP+ IA KE +K
Sbjct: 131 LTKYEKARVIGTRALQIAQSSPIYVDTEDKEYDPIVIAEKEFALKK 176
>gi|18313953|ref|NP_560620.1| DNA-directed RNA polymerase subunit K [Pyrobaculum aerophilum str.
IM2]
gi|20178079|sp|Q8ZTF9.1|RPOK_PYRAE RecName: Full=DNA-directed RNA polymerase subunit K
gi|18161525|gb|AAL64802.1| DNA-directed RNA polymerase subunit [Pyrobaculum aerophilum str.
IM2]
Length = 106
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELE--GETDPLQIAMKELKARKIPIIIRRYLPDNS 70
+ +YE AR++G RALQ+AM A +V+++ G DP+ IAM+EL+ + II R +PD
Sbjct: 31 LTKYETARIIGARALQLAMGAQPLVDIQEVGSVDPVLIAMEELRRGLLDFIIVREMPDGK 90
Query: 71 YEDWGIDELKIIDR 84
+ EL ++R
Sbjct: 91 TMRIRLKELLELER 104
>gi|257053580|ref|YP_003131413.1| RNA polymerase Rpb6 [Halorhabdus utahensis DSM 12940]
gi|335433583|ref|ZP_08558403.1| RNA polymerase Rpb6 [Halorhabdus tiamatea SARL4B]
gi|256692343|gb|ACV12680.1| RNA polymerase Rpb6 [Halorhabdus utahensis DSM 12940]
gi|334898589|gb|EGM36693.1| RNA polymerase Rpb6 [Halorhabdus tiamatea SARL4B]
Length = 58
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 14 KRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
RYE+AR+LG RALQ+A APV+++ + +T P+ IA +E A +P + R
Sbjct: 7 NRYEKARILGARALQVAYGAPVLIDTD-QTQPILIAAEEYDAGVLPFTVNR 56
>gi|336252147|ref|YP_004595254.1| DNA-directed RNA polymerase subunit K [Halopiger xanaduensis
SH-6]
gi|335336136|gb|AEH35375.1| DNA-directed RNA polymerase subunit K [Halopiger xanaduensis
SH-6]
Length = 59
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Query: 14 KRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
RYE+AR+LG RALQ++ APV++E + +T P+ IA +E A +P ++R
Sbjct: 7 NRYEKARILGARALQVSYGAPVLIETD-QTQPILIAAEEYDAGVLPFTVKR 56
>gi|448298711|ref|ZP_21488738.1| RNA polymerase Rpb6 [Natronorubrum tibetense GA33]
gi|445591013|gb|ELY45224.1| RNA polymerase Rpb6 [Natronorubrum tibetense GA33]
Length = 61
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Query: 14 KRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
RYE+AR+LG RALQ++ APV++E + +T+P+ IA +E A +P ++R
Sbjct: 7 NRYEKARILGARALQVSYGAPVLIETK-QTEPILIAAEEYDAGVLPFTVKR 56
>gi|84489663|ref|YP_447895.1| RpoK [Methanosphaera stadtmanae DSM 3091]
gi|84372982|gb|ABC57252.1| RpoK [Methanosphaera stadtmanae DSM 3091]
Length = 63
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 35/46 (76%)
Query: 15 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPI 60
R+ERAR++G+RALQI+M A +VE + DP++IA+KE + IP+
Sbjct: 8 RFERARLIGSRALQISMGANPLVEFTPDQDPIKIAIKEYEEGVIPL 53
>gi|305663583|ref|YP_003859871.1| DNA-directed RNA polymerase subunit K [Ignisphaera aggregans DSM
17230]
gi|304378152|gb|ADM27991.1| DNA-directed RNA polymerase, subunit K [Ignisphaera aggregans DSM
17230]
Length = 117
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 41/62 (66%), Gaps = 2/62 (3%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEG--ETDPLQIAMKELKARKIPIIIRRYLPDNS 70
+ +YE+AR++ RALQ+AM AP ++++ DP+ IA +EL +PI+I+R P+
Sbjct: 23 LTKYEKARIVAARALQLAMGAPPLIDISSLQNKDPVIIAERELLLGVLPILIKREKPNGE 82
Query: 71 YE 72
Y+
Sbjct: 83 YQ 84
>gi|448303021|ref|ZP_21492971.1| DNA-directed RNA polymerase subunit K [Natronorubrum
sulfidifaciens JCM 14089]
gi|445594028|gb|ELY48195.1| DNA-directed RNA polymerase subunit K [Natronorubrum
sulfidifaciens JCM 14089]
Length = 59
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Query: 14 KRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
RYE+AR+LG RALQI+ APV+VE +++P+ IA +E A +P ++R
Sbjct: 7 NRYEKARILGARALQISYGAPVLVETN-QSEPILIAAEEYDAGVLPFTVKR 56
>gi|357289732|gb|AET73045.1| hypothetical protein PGAG_00156 [Phaeocystis globosa virus 12T]
gi|357292532|gb|AET73868.1| hypothetical protein PGBG_00160 [Phaeocystis globosa virus 14T]
Length = 218
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 12 VIKRYERARVLGTRALQIAMCA-PVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNS 70
++ +YE+ R++G R Q+ A P + E D IA KELK +KIP II+R + +N+
Sbjct: 147 ILTKYEKTRIIGIRLKQLNNGAEPYIKVAEDIIDNNYIAEKELKLKKIPFIIQRPIANNT 206
Query: 71 YEDWGIDELKII 82
+E W +++L+I+
Sbjct: 207 FEYWRLEDLEIL 218
>gi|223477708|ref|YP_002582347.1| DNA-directed RNA polymerase subunit K [Thermococcus sp. AM4]
gi|240104018|ref|YP_002960327.1| DNA-directed RNA polymerase subunit K [Thermococcus gammatolerans
EJ3]
gi|259494224|sp|C5A244.1|RPOK_THEGJ RecName: Full=DNA-directed RNA polymerase subunit K
gi|214032934|gb|EEB73762.1| DNA-directed RNA polymerase subunit K [Thermococcus sp. AM4]
gi|239911572|gb|ACS34463.1| DNA-directed RNA polymerase subunit K (rpoK) [Thermococcus
gammatolerans EJ3]
Length = 57
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 36/50 (72%)
Query: 15 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
R+E+AR++G RALQIA+ APV+V++ + PLQ A+ E + IPI + R
Sbjct: 6 RFEKARIIGARALQIALGAPVLVDVPEGSTPLQAAIIEFEKGIIPITVIR 55
>gi|110668829|ref|YP_658640.1| DNA-directed RNA polymerase subunit K [Haloquadratum walsbyi DSM
16790]
gi|385804347|ref|YP_005840747.1| DNA-directed RNA polymerase subunit K [Haloquadratum walsbyi C23]
gi|109626576|emb|CAJ53040.1| DNA-directed RNA polymerase subunit K [Haloquadratum walsbyi DSM
16790]
gi|339729839|emb|CCC41122.1| DNA-directed RNA polymerase subunit K [Haloquadratum walsbyi C23]
Length = 65
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Query: 14 KRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
RYE+AR+LG RALQI+ APV+V+ E +++P+ +A +E A +P +++
Sbjct: 13 NRYEKARILGARALQISYGAPVLVDTE-QSEPILVAAEEYDAGVLPFTVKQ 62
>gi|409722490|ref|ZP_11269938.1| RNA polymerase Rpb6 [Halococcus hamelinensis 100A6]
gi|448724491|ref|ZP_21706998.1| RNA polymerase Rpb6 [Halococcus hamelinensis 100A6]
gi|445785808|gb|EMA36594.1| RNA polymerase Rpb6 [Halococcus hamelinensis 100A6]
Length = 61
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 14 KRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
RYE+AR++G RALQIA APV+V+ E T+P+ IA +E A +P + R
Sbjct: 9 NRYEKARIIGARALQIAYGAPVLVQTES-TEPILIAAEEYDADVLPFTVWR 58
>gi|448727618|ref|ZP_21709967.1| DNA-directed RNA polymerase subunit K [Halococcus morrhuae DSM
1307]
gi|445789604|gb|EMA40283.1| DNA-directed RNA polymerase subunit K [Halococcus morrhuae DSM
1307]
Length = 61
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 14 KRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
RYE+AR++G RALQIA APV+V E T+P+ IA +E A +P ++R
Sbjct: 9 NRYEKARIIGARALQIAYGAPVLVGTE-STEPILIAAEEYDADVLPFTVKR 58
>gi|296241913|ref|YP_003649400.1| RNA polymerase Rpb6 [Thermosphaera aggregans DSM 11486]
gi|296094497|gb|ADG90448.1| RNA polymerase Rpb6 [Thermosphaera aggregans DSM 11486]
Length = 107
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEGE--TDPLQIAMKELKARKIPIIIRRYLPDNS 70
+ R+E AR++G RALQ+++ AP ++++ DP+ +A+ EL +P+ IRR + D
Sbjct: 17 LTRFELARIIGARALQLSLGAPTLIDVASLPIKDPVAVAIYELLKTSLPMSIRRRIEDGK 76
Query: 71 YE 72
YE
Sbjct: 77 YE 78
>gi|55377004|ref|YP_134854.1| DNA-directed RNA polymerase subunit K [Haloarcula marismortui
ATCC 43049]
gi|344211115|ref|YP_004795435.1| DNA-directed RNA polymerase subunit K [Haloarcula hispanica ATCC
33960]
gi|448630475|ref|ZP_21673130.1| DNA-directed RNA polymerase subunit K [Haloarcula vallismortis
ATCC 29715]
gi|448640845|ref|ZP_21677632.1| DNA-directed RNA polymerase subunit K [Haloarcula sinaiiensis
ATCC 33800]
gi|448651245|ref|ZP_21680314.1| DNA-directed RNA polymerase subunit K [Haloarcula californiae
ATCC 33799]
gi|448667515|ref|ZP_21686015.1| DNA-directed RNA polymerase subunit K [Haloarcula amylolytica JCM
13557]
gi|448678700|ref|ZP_21689707.1| DNA-directed RNA polymerase subunit K [Haloarcula argentinensis
DSM 12282]
gi|448689113|ref|ZP_21694850.1| DNA-directed RNA polymerase subunit K [Haloarcula japonica DSM
6131]
gi|141414|sp|P29200.1|RPOK_HALMA RecName: Full=DNA-directed RNA polymerase subunit K
gi|148780|gb|AAA73100.1| OrfMNA [Haloarcula marismortui]
gi|55229729|gb|AAV45148.1| DNA-directed RNA polymerase subunit K [Haloarcula marismortui
ATCC 43049]
gi|343782470|gb|AEM56447.1| DNA-directed RNA polymerase subunit K [Haloarcula hispanica ATCC
33960]
gi|445756398|gb|EMA07773.1| DNA-directed RNA polymerase subunit K [Haloarcula vallismortis
ATCC 29715]
gi|445761370|gb|EMA12618.1| DNA-directed RNA polymerase subunit K [Haloarcula sinaiiensis
ATCC 33800]
gi|445770083|gb|EMA21151.1| DNA-directed RNA polymerase subunit K [Haloarcula amylolytica JCM
13557]
gi|445770772|gb|EMA21830.1| DNA-directed RNA polymerase subunit K [Haloarcula californiae
ATCC 33799]
gi|445772687|gb|EMA23732.1| DNA-directed RNA polymerase subunit K [Haloarcula argentinensis
DSM 12282]
gi|445778983|gb|EMA29925.1| DNA-directed RNA polymerase subunit K [Haloarcula japonica DSM
6131]
Length = 57
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 14 KRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
RYE+AR LG RALQ+A APV++E E T P+ IA +E A +P + R
Sbjct: 6 SRYEKARKLGARALQLAHGAPVLIETE-HTQPILIAAEEYDAGVLPFTVNR 55
>gi|289580112|ref|YP_003478578.1| RNA polymerase Rpb6 [Natrialba magadii ATCC 43099]
gi|448281351|ref|ZP_21472657.1| RNA polymerase Rpb6 [Natrialba magadii ATCC 43099]
gi|448352734|ref|ZP_21541515.1| RNA polymerase Rpb6 [Natrialba hulunbeirensis JCM 10989]
gi|448358764|ref|ZP_21547440.1| RNA polymerase Rpb6 [Natrialba chahannaoensis JCM 10990]
gi|289529665|gb|ADD04016.1| RNA polymerase Rpb6 [Natrialba magadii ATCC 43099]
gi|445578773|gb|ELY33173.1| RNA polymerase Rpb6 [Natrialba magadii ATCC 43099]
gi|445642013|gb|ELY95084.1| RNA polymerase Rpb6 [Natrialba hulunbeirensis JCM 10989]
gi|445644778|gb|ELY97787.1| RNA polymerase Rpb6 [Natrialba chahannaoensis JCM 10990]
Length = 58
Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Query: 14 KRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
RYE+AR+LG RALQ++ APV+ E + +T+P+ IA +E A +P ++R
Sbjct: 7 NRYEKARILGARALQVSYGAPVLTESD-QTEPILIAAEEYDAGVLPFTVKR 56
>gi|315425267|dbj|BAJ46935.1| DNA-directed RNA polymerase II subunit F [Candidatus
Caldiarchaeum subterraneum]
gi|343484345|dbj|BAJ49999.1| DNA-directed RNA polymerase subunit K [Candidatus Caldiarchaeum
subterraneum]
Length = 85
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 42/67 (62%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYE 72
+ +YE+AR++G RALQ+++ A +VE+ + IA +E + +PIIIRR D SY
Sbjct: 15 LTKYEKARIIGGRALQLSLGAFPLVEVRPGESNIDIAKREFERGVLPIIIRRKRFDGSYV 74
Query: 73 DWGIDEL 79
D + EL
Sbjct: 75 DIPLKEL 81
>gi|448317553|ref|ZP_21507103.1| DNA-directed RNA polymerase subunit K [Natronococcus jeotgali DSM
18795]
gi|445602944|gb|ELY56914.1| DNA-directed RNA polymerase subunit K [Natronococcus jeotgali DSM
18795]
Length = 60
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Query: 14 KRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
RYE+AR+LG RALQI+ APV++E + ++P+ IA +E A +P +RR
Sbjct: 7 NRYEKARILGARALQISYGAPVLIETD-RSEPILIAAEEYDADVLPFTVRR 56
>gi|171185975|ref|YP_001794894.1| DNA-directed RNA polymerase subunit K [Pyrobaculum neutrophilum
V24Sta]
gi|170935187|gb|ACB40448.1| RNA polymerase Rpb6 [Pyrobaculum neutrophilum V24Sta]
Length = 109
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELE--GETDPLQIAMKELKARKIPIIIRRYLPDNS 70
+ +YE AR+LG RA+Q+AM A +V++ G TDP+ IA +ELK + II R LPD
Sbjct: 34 LTKYEIARILGARAMQLAMGAQPLVDVRELGTTDPVLIAAEELKRGLLDFIIVRELPDGK 93
>gi|448306196|ref|ZP_21496105.1| DNA-directed RNA polymerase subunit K [Natronorubrum bangense JCM
10635]
gi|445598610|gb|ELY52665.1| DNA-directed RNA polymerase subunit K [Natronorubrum bangense JCM
10635]
Length = 59
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Query: 14 KRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
RYE+AR+LG RALQI+ APV++E + +++P+ +A +E A +P ++R
Sbjct: 7 NRYEKARILGARALQISYGAPVLIETD-QSEPILVAAEEYDAGVLPFTVKR 56
>gi|315427444|dbj|BAJ49050.1| DNA-directed RNA polymerase subunit K [Candidatus Caldiarchaeum
subterraneum]
gi|315427477|dbj|BAJ49081.1| DNA-directed RNA polymerase subunit K [Candidatus Caldiarchaeum
subterraneum]
Length = 85
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 41/67 (61%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYE 72
+ +YE+AR++G RALQ++ A +VE+ + IA +E + +PIIIRR D SY
Sbjct: 15 LTKYEKARIIGGRALQLSFGAFPLVEVRPGESNIDIAKREFERGVLPIIIRRKRFDGSYV 74
Query: 73 DWGIDEL 79
D + EL
Sbjct: 75 DIPLKEL 81
>gi|448414201|ref|ZP_21577340.1| DNA-directed RNA polymerase, subunit k [Halosarcina pallida JCM
14848]
gi|445682494|gb|ELZ34911.1| DNA-directed RNA polymerase, subunit k [Halosarcina pallida JCM
14848]
Length = 58
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Query: 14 KRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
RYE+AR+LG RALQ++ APV+++ + +++P+ IA +E A +P +RR
Sbjct: 6 NRYEKARILGARALQVSYGAPVLLDTD-QSEPILIAAEEYDAGVLPFTVRR 55
>gi|448712008|ref|ZP_21701551.1| DNA-directed RNA polymerase subunit K [Halobiforma
nitratireducens JCM 10879]
gi|445791093|gb|EMA41742.1| DNA-directed RNA polymerase subunit K [Halobiforma
nitratireducens JCM 10879]
Length = 58
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Query: 14 KRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
RYE+AR+LG RALQ++ APV++E + + +P+ IA +E A +P ++R
Sbjct: 6 NRYEKARILGARALQVSYGAPVLIETD-QAEPILIAAEEYDAGVLPFTVKR 55
>gi|297527158|ref|YP_003669182.1| RNA polymerase Rpb6 [Staphylothermus hellenicus DSM 12710]
gi|297256074|gb|ADI32283.1| RNA polymerase Rpb6 [Staphylothermus hellenicus DSM 12710]
Length = 104
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEGE--TDPLQIAMKELKARKIPIIIRRYLPDNS 70
+ R+E ARV+G RALQ+++ AP ++ E DP+ IA+ EL +P+ I+R +P+
Sbjct: 14 LTRFEIARVIGARALQLSLGAPPLINPEEAPVKDPVAIAILELLKGLLPMTIKRMMPNGE 73
Query: 71 YE 72
YE
Sbjct: 74 YE 75
>gi|14520751|ref|NP_126226.1| DNA-directed RNA polymerase subunit K [Pyrococcus abyssi GE5]
gi|14591752|ref|NP_143483.1| DNA-directed RNA polymerase subunit K [Pyrococcus horikoshii OT3]
gi|48429125|sp|P62014.1|RPOK_PYRAB RecName: Full=DNA-directed RNA polymerase subunit K
gi|48429126|sp|P62015.1|RPOK_PYRHO RecName: Full=DNA-directed RNA polymerase subunit K
gi|5457967|emb|CAB49457.1| rpoK DNA-directed RNA polymerase, subunit K [Pyrococcus abyssi
GE5]
gi|380741290|tpe|CCE69924.1| TPA: DNA-directed RNA polymerase subunit K [Pyrococcus abyssi
GE5]
Length = 57
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 35/50 (70%)
Query: 15 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
R+E+AR++G RALQIAM APV++++ PL+ A+ E + IPI + R
Sbjct: 6 RFEKARIIGARALQIAMGAPVLIDVPEGITPLEAAIMEFEKGVIPITVIR 55
>gi|375083500|ref|ZP_09730520.1| DNA-directed RNA polymerase subunit K [Thermococcus litoralis DSM
5473]
gi|374741827|gb|EHR78245.1| DNA-directed RNA polymerase subunit K [Thermococcus litoralis DSM
5473]
Length = 57
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 35/50 (70%)
Query: 15 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
R+E+AR++G RALQIAM APV++++ PL+ A+ E + IPI + R
Sbjct: 6 RFEKARIIGARALQIAMGAPVLIDVPEGATPLEAAIMEFEKGIIPITVIR 55
>gi|356506604|ref|XP_003522068.1| PREDICTED: uncharacterized protein LOC100820517 [Glycine max]
Length = 210
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/39 (61%), Positives = 30/39 (76%), Gaps = 1/39 (2%)
Query: 13 IKRYERARVLGTRALQIAMC-APVMVELEGETDPLQIAM 50
+ +YE AR+LGT ALQI PVMVELEGETDPL++ +
Sbjct: 63 MTKYEHARILGTCALQIRFYDVPVMVELEGETDPLEVDL 101
>gi|408381883|ref|ZP_11179430.1| DNA-directed RNA polymerase subunit K [Methanobacterium
formicicum DSM 3637]
gi|407815331|gb|EKF85916.1| DNA-directed RNA polymerase subunit K [Methanobacterium
formicicum DSM 3637]
Length = 98
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 37/51 (72%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIR 63
+ R+ERAR++G RALQ++M A M+++ + DP+ IA+ EL + +P+ +R
Sbjct: 46 LNRFERARLIGARALQLSMGAKPMIDVTPDMDPIDIAVIELNKKVLPLDVR 96
>gi|448728481|ref|ZP_21710809.1| RNA polymerase Rpb6 [Halococcus saccharolyticus DSM 5350]
gi|445796963|gb|EMA47448.1| RNA polymerase Rpb6 [Halococcus saccharolyticus DSM 5350]
Length = 58
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 14 KRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
RYE+AR++G RALQIA APV+V + T+P+ IA +E A +P + R
Sbjct: 6 NRYEKARIIGARALQIAYGAPVLVGTD-STEPILIAAEEYDAGVLPFTVNR 55
>gi|448733722|ref|ZP_21715964.1| RNA polymerase Rpb6 [Halococcus salifodinae DSM 8989]
gi|445802242|gb|EMA52549.1| RNA polymerase Rpb6 [Halococcus salifodinae DSM 8989]
Length = 58
Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 14 KRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
RYE+AR++G RALQIA APV+V + T+P+ IA +E A +P + R
Sbjct: 6 NRYEKARIIGARALQIAYGAPVLVGTD-STEPILIAAEEYDAGVLPFTVNR 55
>gi|374633680|ref|ZP_09706045.1| DNA-directed RNA polymerase, subunit K/omega [Metallosphaera
yellowstonensis MK1]
gi|373523468|gb|EHP68388.1| DNA-directed RNA polymerase, subunit K/omega [Metallosphaera
yellowstonensis MK1]
Length = 96
Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 40/64 (62%), Gaps = 4/64 (6%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEG----ETDPLQIAMKELKARKIPIIIRRYLPD 68
+ YERAR++ RALQ+AM A ++++ + ++IA +ELKAR +PI +RR P+
Sbjct: 25 LTSYERARIVSARALQLAMGAAPLIDVVSSGLVNSSSIRIAEEELKARLLPISVRRRFPN 84
Query: 69 NSYE 72
E
Sbjct: 85 GKIE 88
>gi|374326812|ref|YP_005085012.1| DNA-directed RNA polymerase subunit K [Pyrobaculum sp. 1860]
gi|356642081|gb|AET32760.1| DNA-directed RNA polymerase subunit K [Pyrobaculum sp. 1860]
Length = 109
Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 2/69 (2%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELE--GETDPLQIAMKELKARKIPIIIRRYLPDNS 70
+ +YE AR++G RA+Q+AM A +V+++ G TDP+ IAM+EL+ + +I R PD
Sbjct: 34 LTKYEVARIIGARAIQLAMGAQPLVDVQEVGTTDPVLIAMEELRRGLLDFVIVRETPDGK 93
Query: 71 YEDWGIDEL 79
+ EL
Sbjct: 94 TTRIRLKEL 102
>gi|302796815|ref|XP_002980169.1| hypothetical protein SELMODRAFT_419773 [Selaginella
moellendorffii]
gi|300152396|gb|EFJ19039.1| hypothetical protein SELMODRAFT_419773 [Selaginella
moellendorffii]
Length = 523
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 25/38 (65%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
Query: 13 IKRYERARVLGTRA-LQIAMCAPVMVELEGETDPLQIA 49
+ +YERARVLGT A M APVM ELEGETDP +IA
Sbjct: 52 LTKYERARVLGTWASWSCYMNAPVMAELEGETDPFEIA 89
>gi|390960755|ref|YP_006424589.1| DNA-directed RNA polymerase subunit K [Thermococcus sp. CL1]
gi|390519063|gb|AFL94795.1| DNA-directed RNA polymerase subunit K [Thermococcus sp. CL1]
Length = 57
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 34/50 (68%)
Query: 15 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
R+E+AR++G RALQIAM AP+++++ PL AM E + IP+ + R
Sbjct: 6 RFEKARIIGARALQIAMGAPILIDVPEGVTPLDAAMLEFEKGIIPLTVIR 55
>gi|298205310|ref|YP_003717788.1| DNA-directed RNA polymerase subunit K [Nanoarchaeum equitans
Kin4-M]
Length = 70
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 42/66 (63%), Gaps = 6/66 (9%)
Query: 15 RYERARVLGTRALQIAMCAPVMVELEGET------DPLQIAMKELKARKIPIIIRRYLPD 68
+YE+AR++G RA+QIA AP++++++ ET P++IA E + IPI + R +P
Sbjct: 4 KYEKARIIGIRAMQIAQGAPILIKIDKETLKKINYSPIEIAKMEFEKGAIPIKVIRKIPV 63
Query: 69 NSYEDW 74
+ ++
Sbjct: 64 KPHINF 69
>gi|298205351|ref|YP_003717803.1| DNA-directed RNA polymerase subunit K [Staphylothermus marinus
F1]
Length = 106
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEGE--TDPLQIAMKELKARKIPIIIRRYLPDNS 70
+ R+E ARV+G RALQ+++ AP ++ + DP+ IA+ EL +P+ I+R +P+
Sbjct: 16 LTRFEIARVIGARALQLSLGAPPLINPDEAPVKDPVAIAILELLKGLLPMTIKRMMPNGE 75
Query: 71 YE 72
YE
Sbjct: 76 YE 77
>gi|18978014|ref|NP_579371.1| DNA-directed RNA polymerase subunit K [Pyrococcus furiosus DSM
3638]
gi|397652709|ref|YP_006493290.1| DNA-directed RNA polymerase subunit K [Pyrococcus furiosus COM1]
gi|23822103|sp|Q8U0E8.1|RPOK_PYRFU RecName: Full=DNA-directed RNA polymerase subunit K
gi|18893795|gb|AAL81766.1| DNA-directed RNA polymerase subunit k [Pyrococcus furiosus DSM
3638]
gi|393190300|gb|AFN04998.1| DNA-directed RNA polymerase subunit K [Pyrococcus furiosus COM1]
Length = 57
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 35/50 (70%)
Query: 15 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
R+E+AR++G RALQI+M APV++++ PL+ A+ E + IPI + R
Sbjct: 6 RFEKARIIGARALQISMGAPVLIDVPPGITPLEAAILEFEKGVIPITVIR 55
>gi|341582022|ref|YP_004762514.1| DNA-directed RNA polymerase subunit K [Thermococcus sp. 4557]
gi|340809680|gb|AEK72837.1| DNA-directed RNA polymerase subunit K [Thermococcus sp. 4557]
Length = 57
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 34/50 (68%)
Query: 15 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
R+E+AR++G RALQIAM AP+++++ PL AM E + IP+ + R
Sbjct: 6 RFEKARIIGARALQIAMGAPILIDVPEGITPLDAAMLEFEKGIIPLTVIR 55
>gi|242398338|ref|YP_002993762.1| DNA-directed RNA polymerase subunit K [Thermococcus sibiricus MM
739]
gi|242264731|gb|ACS89413.1| DNA-directed RNA polymerase subunit K [Thermococcus sibiricus MM
739]
Length = 77
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 33/50 (66%)
Query: 15 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
R+E+AR++G RALQIAM APV++ + PL A+ E + IPI + R
Sbjct: 26 RFEKARIIGARALQIAMGAPVLINVPEGASPLDAAIVEFEKGIIPITVIR 75
>gi|315229900|ref|YP_004070336.1| DNA-directed RNA polymerase subunit K [Thermococcus barophilus
MP]
gi|315182928|gb|ADT83113.1| DNA-directed RNA polymerase subunit K [Thermococcus barophilus
MP]
Length = 57
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 34/50 (68%)
Query: 15 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
R+E+AR++G RALQIAM APV++++ PL A+ E + IPI + R
Sbjct: 6 RFEKARIIGARALQIAMGAPVLIDVPEGITPLDAAILEFEKGIIPITVIR 55
>gi|448322470|ref|ZP_21511940.1| DNA-directed RNA polymerase subunit K [Natronococcus amylolyticus
DSM 10524]
gi|445601228|gb|ELY55217.1| DNA-directed RNA polymerase subunit K [Natronococcus amylolyticus
DSM 10524]
Length = 60
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 14 KRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
RYE+AR+LG RALQI+ APV++E + ++P+ IA +E A +P + R
Sbjct: 7 NRYEKARILGARALQISYGAPVLIETD-RSEPILIAAEEYDADVLPFTVNR 56
>gi|429192486|ref|YP_007178164.1| DNA-directed RNA polymerase subunit K/omega [Natronobacterium
gregoryi SP2]
gi|448325898|ref|ZP_21515276.1| RNA polymerase Rpb6 [Natronobacterium gregoryi SP2]
gi|429136704|gb|AFZ73715.1| DNA-directed RNA polymerase, subunit K/omega [Natronobacterium
gregoryi SP2]
gi|445613990|gb|ELY67675.1| RNA polymerase Rpb6 [Natronobacterium gregoryi SP2]
Length = 61
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 14 KRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
RYE+AR+LG RALQI+ APV++E + +P+ IA +E A +P ++R
Sbjct: 7 NRYEKARILGARALQISYGAPVLIETD-RAEPILIAAEEYDAGVLPFTVKR 56
>gi|385806035|ref|YP_005842433.1| DNA-directed RNA polymerase subunit K [Fervidicoccus fontis
Kam940]
gi|383795898|gb|AFH42981.1| DNA-directed RNA polymerase subunit K [Fervidicoccus fontis
Kam940]
Length = 98
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 38/55 (69%), Gaps = 1/55 (1%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEG-ETDPLQIAMKELKARKIPIIIRRYL 66
+ R+ERAR++G RALQ++M AP +++ DP+ IA KEL+ +P+ I R+L
Sbjct: 18 LTRFERARIIGARALQLSMGAPPFIDVSNLPKDPIIIAEKELEMGVLPLTIVRWL 72
>gi|313126012|ref|YP_004036282.1| DNA-directed RNA polymerase subunit k [Halogeometricum
borinquense DSM 11551]
gi|448285852|ref|ZP_21477091.1| DNA-directed RNA polymerase, subunit k [Halogeometricum
borinquense DSM 11551]
gi|312292377|gb|ADQ66837.1| DNA-directed RNA polymerase, subunit K [Halogeometricum
borinquense DSM 11551]
gi|445575882|gb|ELY30345.1| DNA-directed RNA polymerase, subunit k [Halogeometricum
borinquense DSM 11551]
Length = 58
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Query: 14 KRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
RYE+AR+LG RALQ++ APV+++ + +++P+ IA +E A +P ++R
Sbjct: 6 NRYEKARILGARALQVSYGAPVLLDTD-QSEPILIAAEEYDAGVLPFTVQR 55
>gi|212223256|ref|YP_002306492.1| DNA-directed RNA polymerase subunit K [Thermococcus onnurineus
NA1]
gi|229564220|sp|B6YSQ8.1|RPOK_THEON RecName: Full=DNA-directed RNA polymerase subunit K
gi|212008213|gb|ACJ15595.1| rpoK DNA-directed RNA polymerase, subunit K [Thermococcus
onnurineus NA1]
Length = 57
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 34/50 (68%)
Query: 15 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
R+ERAR++G RALQIAM AP+++++ PL A+ E + IP+ + R
Sbjct: 6 RFERARIVGARALQIAMGAPILIDVPEGITPLDAALLEFEKGIIPLTVIR 55
>gi|410670086|ref|YP_006922457.1| DNA-directed RNA polymerase, subunit K [Methanolobus
psychrophilus R15]
gi|409169214|gb|AFV23089.1| DNA-directed RNA polymerase, subunit K [Methanolobus
psychrophilus R15]
Length = 58
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 36/50 (72%), Gaps = 1/50 (2%)
Query: 15 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
RYE+AR++G R+LQI+M APV+++ + T+ L +A +E + PI ++R
Sbjct: 8 RYEKARIIGARSLQISMGAPVLID-DPSTNSLYLAKREFELGATPITVKR 56
>gi|383621945|ref|ZP_09948351.1| RNA polymerase Rpb6 [Halobiforma lacisalsi AJ5]
gi|448702870|ref|ZP_21700227.1| RNA polymerase Rpb6 [Halobiforma lacisalsi AJ5]
gi|445776963|gb|EMA27939.1| RNA polymerase Rpb6 [Halobiforma lacisalsi AJ5]
Length = 61
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 14 KRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
RYE+AR+LG RALQ++ APV++E + +P+ IA +E A +P ++R
Sbjct: 7 NRYEKARILGARALQVSYGAPVLIETD-RAEPILIAAEEYDAGVLPFTVKR 56
>gi|433638718|ref|YP_007284478.1| DNA-directed RNA polymerase, subunit K/omega [Halovivax ruber
XH-70]
gi|448378231|ref|ZP_21560705.1| DNA-directed RNA polymerase subunit K [Halovivax asiaticus JCM
14624]
gi|433290522|gb|AGB16345.1| DNA-directed RNA polymerase, subunit K/omega [Halovivax ruber
XH-70]
gi|445654213|gb|ELZ07067.1| DNA-directed RNA polymerase subunit K [Halovivax asiaticus JCM
14624]
Length = 61
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 14 KRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
RYE+AR+LG RALQ++ APV++E + T+P+ IA +E +P + R
Sbjct: 7 NRYEKARILGARALQVSYGAPVLIETD-RTEPILIAAEEYDEGVLPFTVNR 56
>gi|310831481|ref|YP_003970124.1| putative DNA-dependent RNA polymerase subunit Rpb6 [Cafeteria
roenbergensis virus BV-PW1]
gi|309386665|gb|ADO67525.1| putative DNA-dependent RNA polymerase subunit Rpb6 [Cafeteria
roenbergensis virus BV-PW1]
Length = 153
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPD-NSY 71
+ +YE R++GTR Q+++ A M+++EG+ +I +E+K +P+ I+R LPD N
Sbjct: 79 LTKYELVRIIGTRRKQLSLGAKPMIKIEGKLSINEIVDEEIKLNMVPLKIKRPLPDSNKV 138
Query: 72 EDWGIDELK 80
E W EL+
Sbjct: 139 EIWEFSELE 147
>gi|327311662|ref|YP_004338559.1| DNA-directed RNA polymerase subunit K [Thermoproteus uzoniensis
768-20]
gi|326948141|gb|AEA13247.1| DNA-directed RNA polymerase subunit K [Thermoproteus uzoniensis
768-20]
Length = 112
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELE--GETDPLQIAMKELKARKIPIIIRRYLPDN 69
+ R+E ARV+ RALQ+AM A +V++ G DP+ IAM+E + K+ I R LPD
Sbjct: 35 LTRFEVARVVAARALQLAMGAQPLVDINSLGTKDPVLIAMEEFRQGKLNFSIVRQLPDG 93
>gi|332157859|ref|YP_004423138.1| DNA-directed RNA polymerase subunit K [Pyrococcus sp. NA2]
gi|331033322|gb|AEC51134.1| DNA-directed RNA polymerase subunit K [Pyrococcus sp. NA2]
Length = 57
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 34/50 (68%)
Query: 15 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
R+E+AR++G RALQIAM AP+++++ PL A+ E + IPI + R
Sbjct: 6 RFEKARIIGARALQIAMGAPILIDVPEGITPLDAAIMEFERGVIPITVIR 55
>gi|337283754|ref|YP_004623228.1| DNA-directed RNA polymerase subunit K [Pyrococcus yayanosii CH1]
gi|334899688|gb|AEH23956.1| DNA-directed RNA polymerase subunit K [Pyrococcus yayanosii CH1]
Length = 57
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 35/50 (70%)
Query: 15 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
R+E+AR++G RALQI+M AP+++++ PL+ A+ E + IPI + R
Sbjct: 6 RFEKARIIGARALQISMGAPILIDVPEGITPLEAAILEFEKGVIPITVIR 55
>gi|126460377|ref|YP_001056655.1| DNA-directed RNA polymerase subunit K [Pyrobaculum calidifontis
JCM 11548]
gi|126250098|gb|ABO09189.1| DNA-directed RNA polymerase, subunit K [Pyrobaculum calidifontis
JCM 11548]
Length = 110
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELE--GETDPLQIAMKELKARKIPIIIRRYLPDN 69
+ +YE AR++G RA Q+AM A +V++ G DP+ IAM+EL+ + II R LPD
Sbjct: 35 LTKYEIARIIGARATQLAMGAQPLVDVRQLGTIDPVLIAMEELRQGLLDFIIVRELPDG 93
>gi|159041045|ref|YP_001540297.1| RNA polymerase Rpb6 [Caldivirga maquilingensis IC-167]
gi|157919880|gb|ABW01307.1| RNA polymerase Rpb6 [Caldivirga maquilingensis IC-167]
Length = 104
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELE--GETDPLQIAMKELKARKIPIIIRRYLPDNS 70
I +YE A+++ R Q+ AP +V + G +DP+ IA +ELK +P II R LP+
Sbjct: 26 ITKYEFAKIIAVRTRQLMDGAPPLVNPKEIGTSDPVAIAFEELKRGLLPFIIIRRLPNGK 85
Query: 71 YEDWGIDELKIIDR 84
++ + EL+ ++R
Sbjct: 86 RVEYTLKELQELER 99
>gi|307595318|ref|YP_003901635.1| RNA polymerase Rpb6 [Vulcanisaeta distributa DSM 14429]
gi|307550519|gb|ADN50584.1| RNA polymerase Rpb6 [Vulcanisaeta distributa DSM 14429]
Length = 117
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELE--GETDPLQIAMKELKARKIPIIIRRYLPDNS 70
I +YE AR++ RA Q+AM A ++ + G DP+ IAM+E++ +P II R LP+
Sbjct: 38 ITKYELARIVAARAKQLAMGAQPLINPQELGTFDPIDIAMEEVRRGLLPFIIVRTLPNGK 97
Query: 71 Y 71
+
Sbjct: 98 H 98
>gi|269862226|ref|XP_002650754.1| DNA-directed RNA polymerase, subunit K/omega [Enterocytozoon
bieneusi H348]
gi|220065668|gb|EED43303.1| DNA-directed RNA polymerase, subunit K/omega [Enterocytozoon
bieneusi H348]
Length = 57
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 34/48 (70%)
Query: 16 YERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIR 63
YE+A+++G RA Q++ AP +V++ TD ++IA KEL +K+P I+
Sbjct: 4 YEKAKIIGVRATQLSDDAPPLVDIGNLTDCIEIAKKELAEKKLPFIVS 51
>gi|410721679|ref|ZP_11361009.1| DNA-directed RNA polymerase, subunit K/omega [Methanobacterium
sp. Maddingley MBC34]
gi|410598425|gb|EKQ52998.1| DNA-directed RNA polymerase, subunit K/omega [Methanobacterium
sp. Maddingley MBC34]
Length = 58
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 36/51 (70%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIR 63
+ R+ERAR++G RALQ++M A MV++ + D + IA+ EL + +P+ +R
Sbjct: 6 LNRFERARLIGARALQLSMGAKPMVDVTPDMDTIDIAVIELDKKVLPLDVR 56
>gi|146304436|ref|YP_001191752.1| DNA-directed RNA polymerase K [Metallosphaera sedula DSM 5348]
gi|145702686|gb|ABP95828.1| DNA-directed RNA polymerase, subunit K [Metallosphaera sedula DSM
5348]
Length = 110
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 39/62 (62%), Gaps = 6/62 (9%)
Query: 16 YERARVLGTRALQIAMCAPVMVE-----LEGETDPLQIAMKELKARKIPIIIRRYLPDNS 70
YERAR++ RALQ+AM A +++ LEG + ++IA +E ++ +PI +RR P+
Sbjct: 27 YERARIISARALQLAMGASPLIDVSSTGLEGASS-IRIAEEEFRSNLLPISVRRRFPNGK 85
Query: 71 YE 72
E
Sbjct: 86 VE 87
>gi|84619254|emb|CAJ43707.1| RNA polymerase I subunit 1RPB6 [Trypanosoma brucei brucei]
Length = 131
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 20/92 (21%)
Query: 10 TIVIKRYERARVLGTRALQIAMCAPVMVELEG--------------------ETDPLQIA 49
++ + +YE AR++G RA QI V++E + DP+ I
Sbjct: 31 SVYLTKYEVARIIGERARQIVNGTSVLLESQNGCGTGNSLELAEGCADPFAASVDPIHIT 90
Query: 50 MKELKARKIPIIIRRYLPDNSYEDWGIDELKI 81
EL +IP+I+RR PD E+ ++ELK+
Sbjct: 91 KLELLQGRIPMIVRRTWPDGRTENIPVNELKV 122
>gi|325958570|ref|YP_004290036.1| DNA-directed RNA polymerase subunit K [Methanobacterium sp.
AL-21]
gi|325330002|gb|ADZ09064.1| DNA-directed RNA polymerase subunit K [Methanobacterium sp.
AL-21]
Length = 63
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 35/52 (67%), Gaps = 2/52 (3%)
Query: 15 RYERARVLGTRALQIAMCAPVMVELEGET--DPLQIAMKELKARKIPIIIRR 64
R+E+AR++G RALQ++M A V++ DP+ IA+ EL K+P+ +RR
Sbjct: 8 RFEKARIIGARALQLSMGAEPKVDVNDAKSFDPIDIALLELAKNKMPLDVRR 59
>gi|261333898|emb|CBH16892.1| DNA-directed RNA polymerase subunit, putative [Trypanosoma brucei
gambiense DAL972]
Length = 119
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 20/92 (21%)
Query: 10 TIVIKRYERARVLGTRALQIAMCAPVMVELEG--------------------ETDPLQIA 49
++ + +YE AR++G RA QI V++E + DP+ I
Sbjct: 19 SVYLTKYEVARIIGERARQIVNGTSVLLESQNGCGTGNSLELAEGCADPFAASVDPIHIT 78
Query: 50 MKELKARKIPIIIRRYLPDNSYEDWGIDELKI 81
EL +IP+I+RR PD E+ ++ELK+
Sbjct: 79 KLELLQGRIPMIVRRTWPDGRTENIPVNELKV 110
>gi|332797018|ref|YP_004458518.1| RNA polymerase Rpb6 [Acidianus hospitalis W1]
gi|332694753|gb|AEE94220.1| RNA polymerase Rpb6 [Acidianus hospitalis W1]
Length = 95
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 16 YERARVLGTRALQIAMCAPVMVELEG----ETDPLQIAMKELKARKIPIIIRRYLPDNSY 71
YE AR++ RALQ+AM A ++++ G + + + IA +ELK +PI IRR P+
Sbjct: 25 YEIARIVSARALQLAMGAVPLIDISGFKPEQLNSISIAEEELKRGVLPITIRRRFPNGKV 84
Query: 72 EDWGIDEL 79
E + E+
Sbjct: 85 ELISVKEI 92
>gi|119872016|ref|YP_930023.1| DNA-directed RNA polymerase subunit K [Pyrobaculum islandicum DSM
4184]
gi|119673424|gb|ABL87680.1| DNA-directed RNA polymerase, subunit K [Pyrobaculum islandicum
DSM 4184]
Length = 109
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELE--GETDPLQIAMKELKARKIPIIIRRYLPDNS 70
+ +YE AR++G RALQ+AM A +++ G TDP+ IA++E + + II R PD
Sbjct: 34 LTKYEIARIIGARALQLAMGAQPKIDIRELGTTDPVLIALEEFRRGLLDFIIVREFPDGK 93
>gi|325969553|ref|YP_004245745.1| DNA-directed RNA polymerase subunit K [Vulcanisaeta moutnovskia
768-28]
gi|323708756|gb|ADY02243.1| DNA-directed RNA polymerase subunit K [Vulcanisaeta moutnovskia
768-28]
Length = 117
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELE--GETDPLQIAMKELKARKIPIIIRRYLPDNS 70
I +YE AR++ RA Q+AM A ++ + G DP+ IA++E++ IP I+ R LP+
Sbjct: 38 ITKYELARIVAARAKQLAMGAQPLINPQEIGTYDPVDIALEEIRRGLIPFIVVRTLPNGR 97
Query: 71 Y 71
+
Sbjct: 98 H 98
>gi|71754395|ref|XP_828112.1| DNA-directed RNA polymerase subunit [Trypanosoma brucei TREU927]
gi|70833498|gb|EAN79000.1| DNA-directed RNA polymerase subunit, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
Length = 131
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 20/92 (21%)
Query: 10 TIVIKRYERARVLGTRALQIAMCAPVMVELEG--------------------ETDPLQIA 49
++ + +YE AR++G RA QI V+++ + DP+ I
Sbjct: 31 SVYLTKYEVARIIGERARQIVNGTSVLLDSQNGCGTGNSLELAEGCADPFAASVDPIHIT 90
Query: 50 MKELKARKIPIIIRRYLPDNSYEDWGIDELKI 81
EL +IP+I+RR PD E+ ++ELK+
Sbjct: 91 KLELLQGRIPMIVRRTWPDGRTENIPVNELKV 122
>gi|333910743|ref|YP_004484476.1| DNA-directed RNA polymerase subunit K [Methanotorris igneus Kol
5]
gi|333751332|gb|AEF96411.1| DNA-directed RNA polymerase subunit K [Methanotorris igneus Kol
5]
Length = 60
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 38/52 (73%), Gaps = 1/52 (1%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
+ ++E AR+LG RA+QI+ AP+ +E + ++ L+IAM+E+K +P+ ++R
Sbjct: 3 LTKFEVARMLGARAMQISEGAPITIETD-KSSTLEIAMEEIKKGTVPLRVKR 53
>gi|150401516|ref|YP_001325282.1| RNA polymerase Rpb6 [Methanococcus aeolicus Nankai-3]
gi|150014219|gb|ABR56670.1| RNA polymerase Rpb6 [Methanococcus aeolicus Nankai-3]
Length = 61
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 37/54 (68%), Gaps = 1/54 (1%)
Query: 15 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPD 68
++E+AR+LG+RALQI+ A VE E ++ + IAM E K K+P+ +++ L +
Sbjct: 5 KFEKARLLGSRALQISDGAFATVESEEKSSGV-IAMNEFKQGKLPLKVKKPLKE 57
>gi|170290923|ref|YP_001737739.1| DNA-directed RNA polymerase subunit K [Candidatus Korarchaeum
cryptofilum OPF8]
gi|170175003|gb|ACB08056.1| DNA-directed RNA polymerase, subunit K [Candidatus Korarchaeum
cryptofilum OPF8]
Length = 84
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 37/56 (66%), Gaps = 4/56 (7%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVEL----EGETDPLQIAMKELKARKIPIIIRR 64
+ ++E+ R++ RA QIA +P+ +E EG TDP+++A EL+ K+PI+I R
Sbjct: 11 LTKFEKVRIISVRAQQIATGSPLFLEENEIPEGLTDPIELAKLELEKGKLPILIGR 66
>gi|255513354|gb|EET89620.1| RNA polymerase Rpb6 [Candidatus Micrarchaeum acidiphilum ARMAN-2]
Length = 57
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 15 RYERARVLGTRALQIAMCAPVMVELEGE-TDPLQIAMKELKARKIPIIIRR 64
++E+ARV+G RALQ+A AP ++++ E +DPL +A E + IPI I R
Sbjct: 6 KFEKARVIGARALQLAHGAPPLIKVPKEISDPLDLAEIEFEKDIIPITIIR 56
>gi|390938858|ref|YP_006402596.1| DNA-directed RNA polymerase subunit K [Desulfurococcus fermentans
DSM 16532]
gi|390191965|gb|AFL67021.1| DNA-directed RNA polymerase, subunit K [Desulfurococcus
fermentans DSM 16532]
Length = 106
Score = 43.1 bits (100), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 40/63 (63%), Gaps = 4/63 (6%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEG--ETDPLQIAMKELKARKIPIIIRRYLPDNS 70
+ R+E ARV+G RALQ++M AP ++++ DP+ IA+ EL +P+ IRR +N
Sbjct: 17 LTRFEIARVVGARALQLSMGAPPIIDVSNLPVKDPVYIAVNELITGLLPMSIRRI--NNG 74
Query: 71 YED 73
E+
Sbjct: 75 REE 77
>gi|218884345|ref|YP_002428727.1| DNA-directed RNA polymerase subunit K [Desulfurococcus
kamchatkensis 1221n]
gi|218765961|gb|ACL11360.1| DNA-directed RNA polymerase subunit K [Desulfurococcus
kamchatkensis 1221n]
Length = 106
Score = 43.1 bits (100), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 40/63 (63%), Gaps = 4/63 (6%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEG--ETDPLQIAMKELKARKIPIIIRRYLPDNS 70
+ R+E ARV+G RALQ++M AP ++++ DP+ IA+ EL +P+ IRR +N
Sbjct: 17 LTRFEIARVVGARALQLSMGAPPIIDVSNLPVKDPVYIAVNELITGLLPMSIRRI--NNG 74
Query: 71 YED 73
E+
Sbjct: 75 REE 77
>gi|424819346|ref|ZP_18244455.1| RNA polymerase Rpb6 [Candidatus Parvarchaeum acidiphilum
ARMAN-4_'5-way FS']
gi|326422438|gb|EGD71837.1| RNA polymerase Rpb6 [Candidatus Parvarchaeum acidiphilum
ARMAN-4_'5-way FS']
Length = 60
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Query: 15 RYERARVLGTRALQIAMCAPVMVELEGETDP-LQIAMKELKARKIPIIIRR 64
++ERAR++G RALQ++M AP ++++ + D + IA +EL+ +PI +++
Sbjct: 6 KFERARLVGARALQLSMGAPALIKVNKKEDTYIDIAKRELEKDILPITVKK 56
>gi|320101226|ref|YP_004176818.1| DNA-directed RNA polymerase subunit omega [Desulfurococcus
mucosus DSM 2162]
gi|319753578|gb|ADV65336.1| DNA-directed RNA polymerase, omega subunit [Desulfurococcus
mucosus DSM 2162]
Length = 106
Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 37/54 (68%), Gaps = 2/54 (3%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEG--ETDPLQIAMKELKARKIPIIIRR 64
+ R+E ARV+G RALQ++M AP ++++ DP+ IA+KE+ +P+ IRR
Sbjct: 17 MTRFEVARVVGARALQLSMGAPPVIDVSSLPVKDPVYIAIKEVLTGLLPMSIRR 70
>gi|145591904|ref|YP_001153906.1| DNA-directed RNA polymerase subunit K [Pyrobaculum arsenaticum
DSM 13514]
gi|145283672|gb|ABP51254.1| DNA-directed RNA polymerase, subunit K [Pyrobaculum arsenaticum
DSM 13514]
Length = 109
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELE--GETDPLQIAMKELKARKIPIIIRRYLPDNS 70
+ +YE ARV+G RA+Q+AM A +V+ + G DP+ IAM+E + + I+ R PD
Sbjct: 34 LTKYEIARVVGARAIQLAMGAQPLVDPQEVGSMDPVIIAMEEFRRGLLDFIVVREYPDGK 93
>gi|150402497|ref|YP_001329791.1| RNA polymerase Rpb6 [Methanococcus maripaludis C7]
gi|150033527|gb|ABR65640.1| RNA polymerase Rpb6 [Methanococcus maripaludis C7]
Length = 58
Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDN 69
+ ++E AR++G R+LQI+ AP+ +E + T L +A E+K K+P+ +++ + N
Sbjct: 3 LTKFETARLVGARSLQISDGAPLTIESD-RTSSLNLAEDEIKQGKLPLCVKKQVKKN 58
>gi|15921480|ref|NP_377149.1| DNA-directed RNA polymerase subunit K [Sulfolobus tokodaii str.
7]
gi|20178080|sp|Q972B1.1|RPOK_SULTO RecName: Full=DNA-directed RNA polymerase subunit K
gi|15622266|dbj|BAB66258.1| DNA-directed RNA polymerase subunit K [Sulfolobus tokodaii str.
7]
Length = 86
Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEG--ETDPLQIAMKELKARKIPIIIRRYLPDNS 70
+ +YE AR++ RALQ+AM A +++ D + IA +ELK +PI +RR P+
Sbjct: 15 LTKYEIARIISARALQLAMGASPLIDTNNLPFNDVISIAEEELKRGVLPITVRRVYPNGK 74
Query: 71 YE 72
E
Sbjct: 75 IE 76
>gi|150399389|ref|YP_001323156.1| RNA polymerase Rpb6 [Methanococcus vannielii SB]
gi|150012092|gb|ABR54544.1| RNA polymerase Rpb6 [Methanococcus vannielii SB]
Length = 56
Score = 42.0 bits (97), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 38/54 (70%), Gaps = 1/54 (1%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYL 66
+ ++E AR++G R+LQI+ AP+ VE + ++ L +A +E+K KIP+ +++ L
Sbjct: 3 LTKFETARLVGARSLQISDGAPLTVESD-KSSSLNLAEEEVKQGKIPLCVKKPL 55
>gi|347524483|ref|YP_004782053.1| RNA polymerase Rpb6 [Pyrolobus fumarii 1A]
gi|343461365|gb|AEM39801.1| RNA polymerase Rpb6 [Pyrolobus fumarii 1A]
Length = 113
Score = 42.0 bits (97), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEG-----ETDPLQIAMKELKARKIPIIIRRYLP 67
+ R+ERAR++G RALQ+++ AP +++ DP+ +A EL +PI + RY
Sbjct: 17 LTRFERARIIGARALQLSLGAPPLIDTSRLHPRIREDPVLVARVELAEGVLPITVLRYTR 76
Query: 68 DNSYE 72
Y+
Sbjct: 77 RGEYQ 81
>gi|389860368|ref|YP_006362607.1| DNA-directed RNA polymerase subunit K [Thermogladius
cellulolyticus 1633]
gi|388525271|gb|AFK50469.1| DNA-directed RNA polymerase, subunit K [Thermogladius
cellulolyticus 1633]
Length = 104
Score = 41.6 bits (96), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEGE--TDPLQIAMKELKARKIPIIIRRYLPDNS 70
+ R+E ARV+G RALQ+A AP + ++ DP+ IA+ EL +P+ I+R D S
Sbjct: 14 LTRFEVARVVGARALQLAYGAPPLFDISSFPIKDPVAIAIAELIRGLLPMSIKRRGIDGS 73
Query: 71 YE 72
E
Sbjct: 74 TE 75
>gi|45358890|ref|NP_988447.1| RNA polymerase Rpb6 [Methanococcus maripaludis S2]
gi|340624638|ref|YP_004743091.1| DNA-directed RNA polymerase subunit K [Methanococcus maripaludis
X1]
gi|45047756|emb|CAF30883.1| DNA-directed RNA polymerase, subunit K [Methanococcus maripaludis
S2]
gi|339904906|gb|AEK20348.1| DNA-directed RNA polymerase subunit K [Methanococcus maripaludis
X1]
Length = 57
Score = 41.6 bits (96), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 36/52 (69%), Gaps = 1/52 (1%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
+ ++E AR++G R+LQI+ AP+ +E E +T L +A E+K K+P+ +++
Sbjct: 3 LTKFETARLIGARSLQISDGAPLAIESE-KTSSLDLADDEVKQGKLPLCVKK 53
>gi|429217392|ref|YP_007175382.1| DNA-directed RNA polymerase subunit K/omega [Caldisphaera
lagunensis DSM 15908]
gi|429133921|gb|AFZ70933.1| DNA-directed RNA polymerase, subunit K/omega [Caldisphaera
lagunensis DSM 15908]
Length = 95
Score = 41.2 bits (95), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 37/55 (67%), Gaps = 2/55 (3%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELE--GETDPLQIAMKELKARKIPIIIRRY 65
+ +YE+A+++G R+LQ+ AP +++L+ +DP+ IA E++ +P+ I RY
Sbjct: 22 LTKYEKAKIIGIRSLQLTKNAPPLIKLDVVKSSDPVSIAKYEVENGILPVSIIRY 76
>gi|312137114|ref|YP_004004451.1| DNA-directed RNA polymerase, subunit k [Methanothermus fervidus
DSM 2088]
gi|311224833|gb|ADP77689.1| DNA-directed RNA polymerase, subunit K [Methanothermus fervidus
DSM 2088]
Length = 58
Score = 41.2 bits (95), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 37/52 (71%), Gaps = 1/52 (1%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
+ R+E+ R+LG+RALQ+AM A +V+ + + +P+ IA+ ELK IP+ + R
Sbjct: 5 LTRFEKDRLLGSRALQLAMGAKPLVKTD-KINPVDIAILELKKDVIPLKVVR 55
>gi|70607127|ref|YP_255997.1| DNA-directed RNA polymerase subunit K [Sulfolobus acidocaldarius
DSM 639]
gi|449067367|ref|YP_007434449.1| DNA-directed RNA polymerase subunit K [Sulfolobus acidocaldarius
N8]
gi|449069637|ref|YP_007436718.1| DNA-directed RNA polymerase subunit K [Sulfolobus acidocaldarius
Ron12/I]
gi|73920768|sp|P39463.2|RPOK_SULAC RecName: Full=DNA-directed RNA polymerase subunit K
gi|68567775|gb|AAY80704.1| DNA-directed RNA polymerase subunit K [Sulfolobus acidocaldarius
DSM 639]
gi|449035875|gb|AGE71301.1| DNA-directed RNA polymerase subunit K [Sulfolobus acidocaldarius
N8]
gi|449038145|gb|AGE73570.1| DNA-directed RNA polymerase subunit K [Sulfolobus acidocaldarius
Ron12/I]
Length = 89
Score = 40.8 bits (94), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEG--ETDPLQIAMKELKARKIPIIIRRYLPDNS 70
+ +YE AR++ RALQ++M A +++ D + IA +ELK +PI IRR P+
Sbjct: 18 LTKYEIARIISARALQLSMGALPLIDTSNLKSDDVISIAEEELKRGVLPITIRRIYPNGQ 77
Query: 71 YE 72
E
Sbjct: 78 VE 79
>gi|379003393|ref|YP_005259065.1| DNA-directed RNA polymerase subunit K/omega [Pyrobaculum
oguniense TE7]
gi|375158846|gb|AFA38458.1| DNA-directed RNA polymerase, subunit K/omega [Pyrobaculum
oguniense TE7]
Length = 109
Score = 40.8 bits (94), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELE--GETDPLQIAMKELKARKIPIIIRRYLPDNS 70
+ +YE ARV+G RA+Q+AM A +V+ + G DP+ IA++E + + II R PD
Sbjct: 34 LTKYEIARVVGARAIQLAMGAQPLVDPQEVGSMDPVIIAIEEFRRGLLDFIIVREYPDGK 93
>gi|452210337|ref|YP_007490451.1| DNA-directed RNA polymerase subunit K [Methanosarcina mazei
Tuc01]
gi|452100239|gb|AGF97179.1| DNA-directed RNA polymerase subunit K [Methanosarcina mazei
Tuc01]
Length = 37
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 26/34 (76%)
Query: 31 MCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
M APV+VE +G DPL +A++ELKA IPI ++R
Sbjct: 1 MGAPVLVEDDGRLDPLGVAIEELKAGVIPITVKR 34
>gi|134045311|ref|YP_001096797.1| RNA polymerase Rpb6 [Methanococcus maripaludis C5]
gi|132662936|gb|ABO34582.1| RNA polymerase Rpb6 [Methanococcus maripaludis C5]
Length = 58
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 36/52 (69%), Gaps = 1/52 (1%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
+ ++E AR++G R+LQI+ AP+ +E + +T L +A E+K K+P+ +++
Sbjct: 3 LTKFETARLVGARSLQISDGAPLTIESD-KTSSLNLAEDEVKQGKLPLCVKK 53
>gi|222636992|gb|EEE67124.1| hypothetical protein OsJ_24151 [Oryza sativa Japonica Group]
Length = 218
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/26 (73%), Positives = 23/26 (88%)
Query: 26 ALQIAMCAPVMVELEGETDPLQIAMK 51
ALQI+M A VMVEL+GETDPL+I +K
Sbjct: 188 ALQISMNALVMVELDGETDPLEIKIK 213
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 26/45 (57%)
Query: 26 ALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNS 70
ALQI+M A VMVEL+GETDPL+ + + + Y D S
Sbjct: 123 ALQISMNALVMVELDGETDPLECLYSRNSNNEDAVYDKEYEKDGS 167
>gi|374635690|ref|ZP_09707284.1| RNA polymerase Rpb6 [Methanotorris formicicus Mc-S-70]
gi|373561543|gb|EHP87776.1| RNA polymerase Rpb6 [Methanotorris formicicus Mc-S-70]
Length = 60
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 40/61 (65%), Gaps = 3/61 (4%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYE 72
+ ++E ARVLG RA+QI+ A + +E + ++ L IAM+E+K +P+ ++R P +E
Sbjct: 3 LTKFEVARVLGARAMQISEGALITIETD-KSSTLDIAMEEIKKGMVPLRVKR--PKIGFE 59
Query: 73 D 73
+
Sbjct: 60 E 60
>gi|48477615|ref|YP_023321.1| DNA-directed RNA polymerase subunit K [Picrophilus torridus DSM
9790]
gi|73917884|sp|Q6L1M4.1|RPOK_PICTO RecName: Full=DNA-directed RNA polymerase subunit K
gi|48430263|gb|AAT43128.1| DNA-directed RNA polymerase subunit K [Picrophilus torridus DSM
9790]
Length = 60
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPV-MVELEGETDPLQIAMKELKARKIPIIIRR 64
+I +++ ++E+AR++G RALQIAM APV + DP+ IAM E + IPI I+R
Sbjct: 1 MIFMILTKFEKARIIGARALQIAMGAPVIIDISPDIIDPIDIAMIEFENNVIPITIKR 58
>gi|342185146|emb|CCC94629.1| putative DNA-directed RNA polymerase subunit [Trypanosoma
congolense IL3000]
Length = 130
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 21/94 (22%)
Query: 11 IVIKRYERARVLGTRALQIAMCAPVMVE-------------LEGET-------DPLQIAM 50
+ + +YE AR+LG RA QI ++++ EG T DP+ I+
Sbjct: 33 VYLTKYEVARILGERARQIVNGTSLVLDSNSHRGEMSSLEIAEGCTNPYAAAVDPIYISK 92
Query: 51 KELKARKIPIIIRRYLPDNSYEDWGIDELKIIDR 84
EL +KIP+I+RR PD E+ + EL ++D+
Sbjct: 93 VELLQKKIPMIVRRIWPDGWCENIPVSEL-LVDK 125
>gi|424819698|ref|ZP_18244765.1| RNA polymerase Rpb6 [Candidatus Parvarchaeum acidophilus
ARMAN-5_'5-way FS']
gi|326422494|gb|EGD71891.1| RNA polymerase Rpb6 [Candidatus Parvarchaeum acidophilus
ARMAN-5_'5-way FS']
Length = 59
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Query: 15 RYERARVLGTRALQIAMCAPVMVELEGETDP-LQIAMKELKARKIPIIIRR 64
++E+AR++G RALQ++ AP ++++ + D + IA +EL+ +PI ++R
Sbjct: 6 KFEKARLVGARALQLSSGAPPLIKINKKEDTYIDIAKRELEKGILPITVKR 56
>gi|374724099|gb|EHR76179.1| DNA-directed RNA polymerase subunit K [uncultured marine group II
euryarchaeote]
Length = 84
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 37/74 (50%), Gaps = 22/74 (29%)
Query: 15 RYERARVLGTRALQIAMCAPV--------------MVELEGET--------DPLQIAMKE 52
R+ERAR++G RALQI M AP+ +V L G DPL+IA+ E
Sbjct: 10 RFERARIIGARALQIGMGAPLYANEEVLREAFREELVSLYGLEEASVRFVLDPLKIALYE 69
Query: 53 LKARKIPIIIRRYL 66
+ IPI I +L
Sbjct: 70 YEHELIPIDIDPHL 83
>gi|291333602|gb|ADD93294.1| DNA directed RNA polymerase subunit K [uncultured archaeon
MedDCM-OCT-S09-C50]
Length = 84
Score = 38.5 bits (88), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 22/70 (31%)
Query: 15 RYERARVLGTRALQIAMCAPV--------------MVELEGET--------DPLQIAMKE 52
R+ERAR++G RALQI M AP+ +V L G DPL+IA+ E
Sbjct: 10 RFERARIIGARALQIGMGAPLYATEEVLRDQFKEELVSLYGLEEANIRFVLDPLKIALYE 69
Query: 53 LKARKIPIII 62
+ IPI I
Sbjct: 70 YENHLIPIDI 79
>gi|159905729|ref|YP_001549391.1| RNA polymerase Rpb6 [Methanococcus maripaludis C6]
gi|159887222|gb|ABX02159.1| RNA polymerase Rpb6 [Methanococcus maripaludis C6]
Length = 59
Score = 38.5 bits (88), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYL 66
+ ++E AR++G R+LQI+ AP+ +E + T L +A E++ K+P+ +++ +
Sbjct: 3 LTKFETARLVGARSLQISDGAPLAIESD-RTSSLNLAEDEVRQGKLPLCVKKQV 55
>gi|352682887|ref|YP_004893411.1| DNA-directed RNA polymerase subunit K [Thermoproteus tenax Kra 1]
gi|350275686|emb|CCC82333.1| DNA-directed RNA polymerase subunit K [Thermoproteus tenax Kra 1]
Length = 112
Score = 38.5 bits (88), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEGET--DPLQIAMKELKARKIPIIIRRYLPDN 69
+ R+E ARV+ RA+Q++M A ++++ DP+ IA++E K K+ I R LPD
Sbjct: 35 LTRFEVARVIAARAIQLSMGAEPLIDISTLQIKDPVIIAIEEFKQGKLNFSIVRELPDG 93
>gi|302348224|ref|YP_003815862.1| DNA-directed RNA polymerase subunit K [Acidilobus saccharovorans
345-15]
gi|302328636|gb|ADL18831.1| DNA-directed RNA polymerase subunit K [Acidilobus saccharovorans
345-15]
Length = 95
Score = 38.5 bits (88), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEG---ETDPLQIAMKELKARKIPIIIRRYLPDN 69
+ +YERA+++G RALQ+ A +V+++ D ++IA EL +PI I RY P
Sbjct: 22 LTKYERAKIIGLRALQLDSGALPLVDVDKINVRRDSVEIAAYELDHGLLPISIVRYTPSG 81
Query: 70 SYE 72
+ +
Sbjct: 82 AVQ 84
>gi|336121974|ref|YP_004576749.1| RNA polymerase Rpb6 [Methanothermococcus okinawensis IH1]
gi|334856495|gb|AEH06971.1| RNA polymerase Rpb6 [Methanothermococcus okinawensis IH1]
Length = 56
Score = 38.1 bits (87), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
Query: 15 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIR 63
++E+AR++G R+LQI+ A + ++ E + L IAM+E + KIP+ ++
Sbjct: 5 KFEKARIIGARSLQISDGAFLTIDTE-KYSSLDIAMEEFEKGKIPLKVK 52
>gi|289191575|ref|YP_003457516.1| RNA polymerase Rpb6 [Methanocaldococcus sp. FS406-22]
gi|288938025|gb|ADC68780.1| RNA polymerase Rpb6 [Methanocaldococcus sp. FS406-22]
Length = 57
Score = 38.1 bits (87), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPI 60
+ ++E AR+LG R+LQI+ A + +E E ++ L+IA +E+K K+P+
Sbjct: 3 LTKFEIARILGARSLQISNGAYITIETECDSS-LKIAYEEIKQGKVPL 49
>gi|401423159|ref|XP_003876066.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322492307|emb|CBZ27581.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 129
Score = 37.7 bits (86), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 22/91 (24%)
Query: 11 IVIKRYERARVLGTRALQIAMCAPVMVELEGET--------------------DPLQIAM 50
+ + ++E ARV+G RA QIA A + L G T DP+ +A
Sbjct: 32 LYLTKFEVARVIGERAKQIASGAAM--SLPGTTSGLDSVETAERCTNPRSLAVDPVMMAK 89
Query: 51 KELKARKIPIIIRRYLPDNSYEDWGIDELKI 81
+L RKI +++RR PD + E ++EL +
Sbjct: 90 YDLLQRKIRMLVRRIWPDGAVETIPVNELMV 120
>gi|157870432|ref|XP_001683766.1| conserved hypothetical protein [Leishmania major strain Friedlin]
gi|68126833|emb|CAJ04437.1| conserved hypothetical protein [Leishmania major strain Friedlin]
Length = 129
Score = 37.7 bits (86), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 18/89 (20%)
Query: 11 IVIKRYERARVLGTRALQIAMCAPVMVELEGE------------------TDPLQIAMKE 52
+ + ++E AR++G RA QIA A + + G DP+ +A +
Sbjct: 32 LYLTKFEVARIIGERAKQIASGAAMSLPGTGSGLDSVETAERCTNPRSLAVDPVMMAKYD 91
Query: 53 LKARKIPIIIRRYLPDNSYEDWGIDELKI 81
L RKI +++RR PD + E ++EL +
Sbjct: 92 LLQRKIRMLVRRVWPDGAVETIPVNELMV 120
>gi|218199556|gb|EEC81983.1| hypothetical protein OsI_25903 [Oryza sativa Indica Group]
Length = 147
Score = 37.7 bits (86), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 28/42 (66%), Gaps = 3/42 (7%)
Query: 13 IKRYERARVLGT---RALQIAMCAPVMVELEGETDPLQIAMK 51
I Y++ RV ALQI+M A VMVEL+GET PL+I +K
Sbjct: 101 INVYDKIRVCTHPWYTALQISMNALVMVELDGETYPLEIKIK 142
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/22 (77%), Positives = 20/22 (90%)
Query: 26 ALQIAMCAPVMVELEGETDPLQ 47
ALQI+M A VMVEL+GETDPL+
Sbjct: 68 ALQISMNALVMVELDGETDPLE 89
>gi|296109375|ref|YP_003616324.1| RNA polymerase Rpb6 [methanocaldococcus infernus ME]
gi|295434189|gb|ADG13360.1| RNA polymerase Rpb6 [Methanocaldococcus infernus ME]
Length = 55
Score = 37.7 bits (86), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPI 60
+ ++E AR++G R+LQIA A +++E E L+IA +E K KIP+
Sbjct: 3 LTKFEVARIIGARSLQIADGAYSTIDIE-ELSSLKIAFEEFKRGKIPL 49
>gi|288560170|ref|YP_003423656.1| DNA-directed RNA polymerase subunit K RpoK [Methanobrevibacter
ruminantium M1]
gi|288542880|gb|ADC46764.1| DNA-directed RNA polymerase subunit K RpoK [Methanobrevibacter
ruminantium M1]
Length = 72
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 8/59 (13%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEGET--------DPLQIAMKELKARKIPIIIR 63
+ R+E+ARVLG RA+Q++M A M E E DP+ IA EL+ +P+ +R
Sbjct: 11 LTRFEKARVLGARAIQLSMGAKPMEHKEIEKFIKNSKSLDPIDIATLELELGILPLDVR 69
>gi|229891568|sp|P0C9D9.1|RPB6_ASFK5 RecName: Full=DNA-directed RNA polymerase subunit 6 homolog
Length = 147
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYL- 66
I + V+ +E R++ RA Q+A+ M++ + + P+ IA +EL RKIP+++ R +
Sbjct: 66 ITSNVLTTFEATRLVAVRAQQLAINGSTMLK-KKYSSPIDIAKQELFNRKIPLLVMRCIK 124
Query: 67 --PDNS--YEDWGIDELKI 81
PD E W E+ I
Sbjct: 125 VTPDGQKIVEIWNPREMGI 143
>gi|229891570|sp|P0C9D7.1|RPB6_ASFP4 RecName: Full=DNA-directed RNA polymerase subunit 6 homolog
gi|229891571|sp|P0C9D8.1|RPB6_ASFWA RecName: Full=DNA-directed RNA polymerase subunit 6 homolog
Length = 147
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYL- 66
I + V+ +E R++ RA Q+A+ M++ + + P+ IA +EL RKIP+++ R +
Sbjct: 66 ITSNVLTTFEATRLVAVRAQQLAINGSTMLK-KKYSSPIDIAKQELFNRKIPLLVMRCIK 124
Query: 67 --PDNS--YEDWGIDELKI 81
PD E W E+ I
Sbjct: 125 VTPDGQKIVEIWNPREMGI 143
>gi|229891569|sp|P0C9D6.1|RPB6_ASFM2 RecName: Full=DNA-directed RNA polymerase subunit 6 homolog
Length = 151
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYL 66
I + V+ +E R++ RA Q+A+ M++ + + P+ IA +EL RKIP+++ R +
Sbjct: 70 ITSNVLTTFEATRLVAVRAQQLAINGSTMLK-KKYSSPIDIAKQELFNRKIPLLVMRCI 127
>gi|9628177|ref|NP_042763.1| RNA polymerase subunit 6 [African swine fever virus]
gi|1173135|sp|P42484.1|RPO6_ASFB7 RecName: Full=DNA-directed RNA polymerase subunit 6 homolog
gi|780439|gb|AAA65299.1| RNA polymerase subunit 6 [African swine fever virus]
gi|162849279|emb|CAN10169.1| RNA polymerase subunit 6 [African swine fever virus Benin 97/1]
gi|1097459|prf||2113434BW RNA polymerase:SUBUNIT=6
Length = 147
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYL 66
I + V+ +E R++ RA Q+A+ M++ + + P+ IA +EL RKIP+++ R +
Sbjct: 66 ITSNVLTTFEATRLVAVRAQQLAINGSTMLK-KKYSSPIDIAKQELFNRKIPLLVMRCI 123
>gi|291289513|emb|CBH29170.1| BA71V-C147L (g6L) [African swine fever virus E75]
Length = 145
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYL 66
I + V+ +E R++ RA Q+A+ M++ + + P+ IA +EL RKIP+++ R +
Sbjct: 66 ITSNVLTTFEATRLVAVRAQQLAINGSTMLK-KKYSSPIDIAKQELFNRKIPLLVMRCI 123
>gi|303398754|emb|CBW46735.1| C147L [African swine fever virus Georgia 2007/1]
Length = 147
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYL 66
I + V+ +E R++ RA Q+A+ M++ + + P+ IA +EL RKIP+++ R +
Sbjct: 66 ITSNVLTTFEATRLVAVRAQQLAINGSTMLK-KKYSSPIDIAKQELFNRKIPLLVMRCI 123
>gi|156936946|ref|YP_001434742.1| DNA-directed RNA polymerase subunit K [Ignicoccus hospitalis
KIN4/I]
gi|156565930|gb|ABU81335.1| DNA-directed RNA polymerase, subunit K [Ignicoccus hospitalis
KIN4/I]
Length = 97
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 37/54 (68%), Gaps = 2/54 (3%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEG--ETDPLQIAMKELKARKIPIIIRR 64
+ ++ERA ++G RALQ+++ AP ++++ + D L IA +EL+ +PI ++R
Sbjct: 14 LTKFERAVIVGVRALQLSIGAPPLIDISKLPKRDALIIAREELRRGLLPITVKR 67
>gi|585916|sp|Q08399.1|RPO6_ASFM2 RecName: Full=DNA-directed RNA polymerase subunit 6 homolog
gi|304101|gb|AAA42731.1| RNA polymerase subunit 6 [African swine fever virus]
Length = 139
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYL 66
I + V+ +E R++ RA Q+A+ M++ + + P+ IA +EL RKIP+++ R +
Sbjct: 70 ITSNVLTTFEATRLVAVRAQQLAINGSTMLK-KKYSSPIDIAKQELFNRKIPLLVMRCI 127
>gi|15668369|ref|NP_247165.1| DNA-directed RNA polymerase subunit K [Methanocaldococcus
jannaschii DSM 2661]
gi|2500632|sp|Q57650.1|RPOK_METJA RecName: Full=DNA-directed RNA polymerase subunit K
gi|1498971|gb|AAB98177.1| DNA-directed RNA polymerase, subunit K (rpoK) [Methanocaldococcus
jannaschii DSM 2661]
Length = 57
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPI 60
+ ++E AR+LG R+LQI+ A +E + ++ L+IA +E+K K+P+
Sbjct: 3 LTKFEIARILGARSLQISSGAYATIETKCDSS-LKIAYEEIKQGKVPL 49
>gi|479917|pir||S35644 DNA-directed RNA polymerase chain 6 homolog - African swine fever
virus
Length = 69
Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
I + V+ +E R++ RA Q+A+ M L+ + P+ IA +EL RKIP+++ R
Sbjct: 2 ITSNVLTTFEATRLVAVRAQQLAINGSTM--LKKKYSPIDIAKQELFNRKIPLLVMR 56
>gi|146088424|ref|XP_001466047.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|398016314|ref|XP_003861345.1| hypothetical protein, conserved [Leishmania donovani]
gi|134070149|emb|CAM68482.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|322499571|emb|CBZ34644.1| hypothetical protein, conserved [Leishmania donovani]
Length = 129
Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 22/91 (24%)
Query: 11 IVIKRYERARVLGTRALQIAMCAPVMVELEGET--------------------DPLQIAM 50
+ + ++E AR++G RA QIA A + L G DP+ +A
Sbjct: 32 LYLTKFEVARIIGERAKQIASGAAM--SLPGTASGLDSVETAERCTNPRSLAVDPVMMAK 89
Query: 51 KELKARKIPIIIRRYLPDNSYEDWGIDELKI 81
+L RKI +++RR PD + E ++EL +
Sbjct: 90 YDLLQRKIRMLVRRVWPDGAVETIPVNELMV 120
>gi|340058169|emb|CCC52522.1| putative DNA-directed RNA polymerase subunit [Trypanosoma vivax
Y486]
Length = 127
Score = 35.0 bits (79), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 44/95 (46%), Gaps = 21/95 (22%)
Query: 10 TIVIKRYERARVLGTRALQIA----------MCAPVMVELEGE----------TDPLQIA 49
T + +YE AR++G RA QI CA LE DP+ IA
Sbjct: 27 TPYLTKYELARIVGERARQIVNGTSVFLRDQSCADERSVLEMAERCVDPYSPLVDPIYIA 86
Query: 50 MKELKARKIPIIIRRYLPDNSYEDWGIDELKIIDR 84
EL +IP+I+RR PD E+ + EL ++DR
Sbjct: 87 KIELLQGRIPMIVRRTWPDGLTENIPLCEL-LVDR 120
>gi|154338594|ref|XP_001565519.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134062571|emb|CAM39013.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 129
Score = 34.7 bits (78), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 22/89 (24%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEGET--------------------DPLQIAMKE 52
+ ++E AR++G RA QI A + L G T DP+ +A +
Sbjct: 34 LTKFEVARIIGERAKQITSGAAM--SLPGTTTGLDSVEIAERCTNPRSLAVDPVMMAKYD 91
Query: 53 LKARKIPIIIRRYLPDNSYEDWGIDELKI 81
L RKI +++RR PD E ++EL +
Sbjct: 92 LLQRKIRMLVRRTWPDGVVETIPVNELMV 120
>gi|256810438|ref|YP_003127807.1| RNA polymerase Rpb6 [Methanocaldococcus fervens AG86]
gi|256793638|gb|ACV24307.1| RNA polymerase Rpb6 [Methanocaldococcus fervens AG86]
Length = 61
Score = 34.3 bits (77), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPI 60
+ ++E AR+LG R+LQI+ A +E + ++ L+IA +E++ K+P+
Sbjct: 7 LTKFEIARILGARSLQISNGAYATIETKQDSS-LKIAYEEIEQGKVPL 53
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.326 0.143 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,216,590,646
Number of Sequences: 23463169
Number of extensions: 39211018
Number of successful extensions: 109389
Number of sequences better than 100.0: 613
Number of HSP's better than 100.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 74
Number of HSP's that attempted gapping in prelim test: 108704
Number of HSP's gapped (non-prelim): 616
length of query: 84
length of database: 8,064,228,071
effective HSP length: 54
effective length of query: 30
effective length of database: 6,797,216,945
effective search space: 203916508350
effective search space used: 203916508350
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 69 (31.2 bits)