BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy548
(84 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5R592|RPAB2_PONAB DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Pongo
abelii GN=POLR2F PE=2 SV=1
Length = 127
Score = 132 bits (331), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 65/76 (85%), Positives = 68/76 (89%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERARVLGTRALQIAMCAPVMVELEGETDPL IAMKELKARKIPIIIRRYLP
Sbjct: 52 ITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLP 111
Query: 68 DNSYEDWGIDELKIID 83
D SYEDWG+DEL I D
Sbjct: 112 DGSYEDWGVDELIITD 127
>sp|P61218|RPAB2_HUMAN DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Homo
sapiens GN=POLR2F PE=1 SV=1
Length = 127
Score = 132 bits (331), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 65/76 (85%), Positives = 68/76 (89%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERARVLGTRALQIAMCAPVMVELEGETDPL IAMKELKARKIPIIIRRYLP
Sbjct: 52 ITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLP 111
Query: 68 DNSYEDWGIDELKIID 83
D SYEDWG+DEL I D
Sbjct: 112 DGSYEDWGVDELIITD 127
>sp|P61217|RPAB2_CRIGR DNA-directed RNA polymerases I, II, and III subunit RPABC2
OS=Cricetulus griseus GN=POLR2F PE=2 SV=1
Length = 127
Score = 132 bits (331), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 65/76 (85%), Positives = 68/76 (89%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERARVLGTRALQIAMCAPVMVELEGETDPL IAMKELKARKIPIIIRRYLP
Sbjct: 52 ITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLP 111
Query: 68 DNSYEDWGIDELKIID 83
D SYEDWG+DEL I D
Sbjct: 112 DGSYEDWGVDELIITD 127
>sp|Q32PE0|RPAB2_BOVIN DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Bos
taurus GN=POLR2F PE=2 SV=1
Length = 127
Score = 132 bits (331), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 65/76 (85%), Positives = 68/76 (89%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERARVLGTRALQIAMCAPVMVELEGETDPL IAMKELKARKIPIIIRRYLP
Sbjct: 52 ITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLP 111
Query: 68 DNSYEDWGIDELKIID 83
D SYEDWG+DEL I D
Sbjct: 112 DGSYEDWGVDELIITD 127
>sp|O88828|RPAB2_RAT DNA-directed RNA polymerases I, II, and III subunit RPABC2
OS=Rattus norvegicus GN=Polr2f PE=1 SV=1
Length = 127
Score = 131 bits (330), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 65/76 (85%), Positives = 68/76 (89%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERARVLGTRALQIAMCAPVMVELEGETDPL IAMKELKARKIPIIIRRYLP
Sbjct: 52 ITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLP 111
Query: 68 DNSYEDWGIDELKIID 83
D SYEDWG+DEL I D
Sbjct: 112 DGSYEDWGVDELIISD 127
>sp|P61219|RPAB2_MOUSE DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Mus
musculus GN=Polr2f PE=2 SV=1
Length = 127
Score = 131 bits (330), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 65/76 (85%), Positives = 68/76 (89%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERARVLGTRALQIAMCAPVMVELEGETDPL IAMKELKARKIPIIIRRYLP
Sbjct: 52 ITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLP 111
Query: 68 DNSYEDWGIDELKIID 83
D SYEDWG+DEL I D
Sbjct: 112 DGSYEDWGVDELIISD 127
>sp|Q24320|RPAB2_DROME DNA-directed RNA polymerases I, II, and III subunit RPABC2
OS=Drosophila melanogaster GN=RpII18 PE=2 SV=1
Length = 131
Score = 129 bits (324), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 61/77 (79%), Positives = 69/77 (89%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
I T + +YERARVLGTRALQIAMCAP+MVEL+GETDPLQIAMKELK +KIPIIIRRYLP
Sbjct: 55 ITTKYMTKYERARVLGTRALQIAMCAPIMVELDGETDPLQIAMKELKQKKIPIIIRRYLP 114
Query: 68 DNSYEDWGIDELKIIDR 84
D+SYEDW IDEL ++D
Sbjct: 115 DHSYEDWSIDELIMVDN 131
>sp|Q17684|RPAB2_CAEEL Probable DNA-directed RNA polymerases I, II, and III subunit RPABC2
OS=Caenorhabditis elegans GN=rpb-6 PE=3 SV=1
Length = 137
Score = 119 bits (298), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 57/82 (69%), Positives = 67/82 (81%)
Query: 2 VFSPSFIITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPII 61
V + + T + +YERARVLGTRALQIAM APVMVELEGETDPL+IA KELK R+IPII
Sbjct: 55 VPTSEHVTTPFMTKYERARVLGTRALQIAMGAPVMVELEGETDPLEIARKELKQRRIPII 114
Query: 62 IRRYLPDNSYEDWGIDELKIID 83
+RRYLPD SYEDW D+L++ D
Sbjct: 115 VRRYLPDGSYEDWPTDQLQLAD 136
>sp|A8WSV7|RPAB2_CAEBR Probable DNA-directed RNA polymerases I, II, and III subunit RPABC2
OS=Caenorhabditis briggsae GN=rpb-6 PE=3 SV=1
Length = 138
Score = 118 bits (296), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 56/82 (68%), Positives = 67/82 (81%)
Query: 2 VFSPSFIITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPII 61
V + + T + +YERARVLGTRALQIAM APVMVELEGETDPL+IA KELK R++PII
Sbjct: 56 VPTSEHVTTPFMTKYERARVLGTRALQIAMGAPVMVELEGETDPLEIARKELKQRRVPII 115
Query: 62 IRRYLPDNSYEDWGIDELKIID 83
IRRYLPD SYEDW ++L++ D
Sbjct: 116 IRRYLPDGSYEDWPTEQLQLAD 137
>sp|P36595|RPAB2_SCHPO DNA-directed RNA polymerases I, II, and III subunit RPABC2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rpb6 PE=1 SV=1
Length = 142
Score = 112 bits (280), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 50/72 (69%), Positives = 61/72 (84%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
T + +YERAR+LGTRALQI+M APV+V+LEGETDPLQIAMKEL +KIP+++RRYLP
Sbjct: 70 TTTPYMTKYERARILGTRALQISMNAPVLVDLEGETDPLQIAMKELAQKKIPLLVRRYLP 129
Query: 68 DNSYEDWGIDEL 79
D SYEDW + EL
Sbjct: 130 DGSYEDWSVAEL 141
>sp|Q54FA8|RPAB2_DICDI DNA-directed RNA polymerases I, II, and III subunit rpabc2
OS=Dictyostelium discoideum GN=polr2f PE=3 SV=1
Length = 133
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 51/72 (70%), Positives = 63/72 (87%)
Query: 10 TIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDN 69
T + +YERAR+LG+RALQI+M AP+MVELEGETDPLQIA KEL+A+KIP+IIRR+LP+
Sbjct: 62 TRYMTKYERARLLGSRALQISMNAPIMVELEGETDPLQIAWKELRAKKIPLIIRRFLPNG 121
Query: 70 SYEDWGIDELKI 81
YEDW +DEL I
Sbjct: 122 MYEDWSVDELSI 133
>sp|P20435|RPAB2_YEAST DNA-directed RNA polymerases I, II, and III subunit RPABC2
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=RPO26 PE=1 SV=1
Length = 155
Score = 110 bits (275), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 51/75 (68%), Positives = 64/75 (85%), Gaps = 1/75 (1%)
Query: 9 ITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPD 68
T + +YERAR+LGTRALQI+M APV V+LEGETDPL+IAMKEL +KIP++IRRYLPD
Sbjct: 81 TTPYMTKYERARILGTRALQISMNAPVFVDLEGETDPLRIAMKELAEKKIPLVIRRYLPD 140
Query: 69 NSYEDWGIDELKIID 83
S+EDW ++EL I+D
Sbjct: 141 GSFEDWSVEEL-IVD 154
>sp|Q8PW42|RPOK_METMA DNA-directed RNA polymerase subunit K OS=Methanosarcina mazei
(strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM
11833 / OCM 88) GN=rpoK PE=3 SV=1
Length = 83
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 41/50 (82%)
Query: 15 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
R+ERAR++G RALQIAM APV+VE +G DPL +A++ELKA IPI ++R
Sbjct: 31 RFERARIVGARALQIAMGAPVLVEDDGRLDPLGVAIEELKAGVIPITVKR 80
>sp|Q8TT40|RPOK_METAC DNA-directed RNA polymerase subunit K OS=Methanosarcina
acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 /
C2A) GN=rpoK PE=3 SV=1
Length = 60
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/50 (60%), Positives = 40/50 (80%)
Query: 15 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
R+ERAR++G RALQIAM APV+V+ +G DPL +A+ ELKA IPI ++R
Sbjct: 8 RFERARIVGARALQIAMGAPVLVDDDGRLDPLGVAIAELKAEIIPITVKR 57
>sp|A1RWX0|RPOK_THEPD DNA-directed RNA polymerase subunit K OS=Thermofilum pendens
(strain Hrk 5) GN=rpoK PE=3 SV=1
Length = 81
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 50/70 (71%), Gaps = 1/70 (1%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEGE-TDPLQIAMKELKARKIPIIIRRYLPDNSY 71
+ R+ERAR++G RALQI++ APV++++ E +DP+ IA KEL+ +PII+ R+ P+
Sbjct: 8 LTRFERARIIGIRALQISLGAPVLIQVSEELSDPITIAEKELELGLLPIIVVRWTPEGKI 67
Query: 72 EDWGIDELKI 81
++ I LK+
Sbjct: 68 QEIPIKYLKL 77
>sp|Q5UQ32|RPO6_MIMIV DNA-directed RNA polymerase subunit 6 OS=Acanthamoeba polyphaga
mimivirus GN=MIMI_R209 PE=3 SV=1
Length = 396
Score = 59.3 bits (142), Expect = 6e-09, Method: Composition-based stats.
Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Query: 12 VIKRYERARVLGTRALQIAMCA-PVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNS 70
++ YE R+LGTRA Q A P++ +EG P ++A EL A+ I+RR+LP
Sbjct: 192 ILTYYEIVRILGTRAQQFNYGAKPLIKGVEG-MHPAKMAFVELTAKMTSFIVRRHLPGKK 250
Query: 71 YEDWGIDELKII 82
YEDW IDEL +I
Sbjct: 251 YEDWRIDELGMI 262
>sp|O29134|RPOK_ARCFU DNA-directed RNA polymerase subunit K OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=rpoK PE=3 SV=1
Length = 75
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 40/50 (80%), Gaps = 1/50 (2%)
Query: 15 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
R+E+AR++G RALQIAM APV++E + +T+PL+IA++E IPI +RR
Sbjct: 13 RFEKARIIGARALQIAMGAPVLIETD-KTEPLEIALEEFNRGVIPITVRR 61
>sp|A2SSV2|RPOK_METLZ DNA-directed RNA polymerase subunit K OS=Methanocorpusculum
labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpoK
PE=3 SV=1
Length = 62
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 40/56 (71%), Gaps = 1/56 (1%)
Query: 15 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNS 70
RYERAR++G RALQI+M APV+V+ + DPL IA++E A ++PI ++R S
Sbjct: 5 RYERARIVGARALQISMGAPVLVKTV-KIDPLDIALEEFDADRVPITVKRQFGTCS 59
>sp|Q9HQJ0|RPOK_HALSA DNA-directed RNA polymerase subunit K OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=rpoK PE=3
SV=1
Length = 60
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 37/52 (71%), Gaps = 1/52 (1%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
RYE+AR++G RALQ+A APV+V+ + +T+P+ IA +E A +P +RR
Sbjct: 7 FSRYEKARIIGARALQVAYGAPVLVDTD-QTEPILIAAEEYDADALPFTVRR 57
>sp|B0R4Y7|RPOK_HALS3 DNA-directed RNA polymerase subunit K OS=Halobacterium salinarum
(strain ATCC 29341 / DSM 671 / R1) GN=rpoK PE=3 SV=1
Length = 60
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 37/52 (71%), Gaps = 1/52 (1%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
RYE+AR++G RALQ+A APV+V+ + +T+P+ IA +E A +P +RR
Sbjct: 7 FSRYEKARIIGARALQVAYGAPVLVDTD-QTEPILIAAEEYDADALPFTVRR 57
>sp|Q9YDJ9|RPOK_AERPE DNA-directed RNA polymerase subunit K OS=Aeropyrum pernix (strain
ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=rpoK PE=3 SV=2
Length = 89
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELE--GETDPLQIAMKELKARKIPIIIRRYLPDNS 70
+ +YERAR++G RA Q+++ AP +V+ E G +PL IA E+ +P+ I RYLP
Sbjct: 8 LTKYERARIIGVRAFQLSIGAPPLVDPERAGSRNPLDIARYEVDNGILPVSIYRYLPGGG 67
Query: 71 YEDWGIDEL 79
+ + L
Sbjct: 68 GQSLSLSRL 76
>sp|O26148|RPOK_METTH DNA-directed RNA polymerase subunit K OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rpoK PE=3 SV=1
Length = 61
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 39/52 (75%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
+ R+ERAR++G RALQI+M A +VE++ DP+ IA KEL+ + +P+ +RR
Sbjct: 8 LTRFERARLIGARALQISMGARPLVEIKESLDPVDIARKELEKKVMPLDVRR 59
>sp|A0B6E6|RPOK_METTP DNA-directed RNA polymerase subunit K OS=Methanosaeta thermophila
(strain DSM 6194 / PT) GN=rpoK PE=3 SV=1
Length = 60
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 38/50 (76%), Gaps = 1/50 (2%)
Query: 15 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
R+ERAR++G RALQI M APV++ + DPL+IA++E++ IPI ++R
Sbjct: 8 RFERARIVGARALQIFMGAPVLIRTD-SIDPLEIALEEMRLGVIPITVKR 56
>sp|B9LPW5|RPOK_HALLT DNA-directed RNA polymerase subunit K OS=Halorubrum lacusprofundi
(strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34)
GN=rpoK PE=3 SV=1
Length = 59
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Query: 14 KRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
RYE+AR+LG RALQ++ APV+++ + +T+P+ +A +E A +P +RR
Sbjct: 7 NRYEKARILGARALQVSYGAPVLIDTD-QTEPILVAAEEYDAGALPFTVRR 56
>sp|Q97ZJ9|RPOK_SULSO DNA-directed RNA polymerase subunit K OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=rpoK
PE=1 SV=1
Length = 95
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEG--ETDPLQIAMKELKARKIPIIIRRYLPD 68
+ RYE ARV+ RALQ+AM AP ++++ TD + IA +E + +PI IRR LP+
Sbjct: 27 LTRYEIARVISARALQLAMGAPALIDINNLSSTDVISIAEEEFRRGVLPITIRRRLPN 84
>sp|C3MUV8|RPOK_SULIM DNA-directed RNA polymerase subunit K OS=Sulfolobus islandicus
(strain M.14.25 / Kamchatka #1) GN=rpoK PE=3 SV=1
Length = 95
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEG--ETDPLQIAMKELKARKIPIIIRRYLPD 68
+ RYE ARV+ RALQ+AM AP ++++ TD + IA +E K +PI IRR LP+
Sbjct: 27 LTRYEIARVISARALQLAMGAPALIDINNISLTDVISIAEEEFKRGVLPITIRRRLPN 84
>sp|C4KH38|RPOK_SULIK DNA-directed RNA polymerase subunit K OS=Sulfolobus islandicus
(strain M.16.4 / Kamchatka #3) GN=rpoK PE=3 SV=1
Length = 95
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEG--ETDPLQIAMKELKARKIPIIIRRYLPD 68
+ RYE ARV+ RALQ+AM AP ++++ TD + IA +E K +PI IRR LP+
Sbjct: 27 LTRYEIARVISARALQLAMGAPALIDINNISLTDVISIAEEEFKRGVLPITIRRRLPN 84
>sp|C3N5H2|RPOK_SULIA DNA-directed RNA polymerase subunit K OS=Sulfolobus islandicus
(strain M.16.27) GN=rpoK PE=3 SV=1
Length = 95
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEG--ETDPLQIAMKELKARKIPIIIRRYLPD 68
+ RYE ARV+ RALQ+AM AP ++++ TD + IA +E K +PI IRR LP+
Sbjct: 27 LTRYEIARVISARALQLAMGAPALIDINNISLTDVISIAEEEFKRGVLPITIRRRLPN 84
>sp|Q9HJ14|RPOK_THEAC DNA-directed RNA polymerase subunit K OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=rpoK PE=3 SV=1
Length = 61
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 38/51 (74%), Gaps = 1/51 (1%)
Query: 15 RYERARVLGTRALQIAMCAPVMVEL-EGETDPLQIAMKELKARKIPIIIRR 64
++E+AR++G RALQIAM APV++++ + DP+ IAM E + IPI I++
Sbjct: 5 KFEKARIIGARALQIAMGAPVIIDVPKNIIDPVDIAMLEFENNVIPITIKK 55
>sp|P58232|RPOK_THEVO DNA-directed RNA polymerase subunit K OS=Thermoplasma volcanium
(strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 /
GSS1) GN=rpoK PE=3 SV=1
Length = 61
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Query: 15 RYERARVLGTRALQIAMCAPVMVEL-EGETDPLQIAMKELKARKIPIIIRR 64
++E+AR++G RALQIAM APV++++ + DP+ IA E + IPI I+R
Sbjct: 5 KFEKARIIGARALQIAMGAPVIIDIPKNVIDPVDIATIEFENNVIPITIKR 55
>sp|Q5JJD0|RPOK_PYRKO DNA-directed RNA polymerase subunit K OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=rpoK PE=3
SV=1
Length = 57
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 35/50 (70%)
Query: 15 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
R+E+AR++G RALQIAM APV++++ PLQ A+ E + IPI + R
Sbjct: 6 RFEKARIIGARALQIAMGAPVLIDVPEGITPLQAALLEFEKGVIPITVIR 55
>sp|Q8ZTF9|RPOK_PYRAE DNA-directed RNA polymerase subunit K OS=Pyrobaculum aerophilum
(strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC
100827) GN=rpoK PE=3 SV=1
Length = 106
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELE--GETDPLQIAMKELKARKIPIIIRRYLPDNS 70
+ +YE AR++G RALQ+AM A +V+++ G DP+ IAM+EL+ + II R +PD
Sbjct: 31 LTKYETARIIGARALQLAMGAQPLVDIQEVGSVDPVLIAMEELRRGLLDFIIVREMPDGK 90
Query: 71 YEDWGIDELKIIDR 84
+ EL ++R
Sbjct: 91 TMRIRLKELLELER 104
>sp|C5A244|RPOK_THEGJ DNA-directed RNA polymerase subunit K OS=Thermococcus
gammatolerans (strain DSM 15229 / JCM 11827 / EJ3)
GN=rpoK PE=3 SV=1
Length = 57
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 36/50 (72%)
Query: 15 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
R+E+AR++G RALQIA+ APV+V++ + PLQ A+ E + IPI + R
Sbjct: 6 RFEKARIIGARALQIALGAPVLVDVPEGSTPLQAAIIEFEKGIIPITVIR 55
>sp|P29200|RPOK_HALMA DNA-directed RNA polymerase subunit K OS=Haloarcula marismortui
(strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809)
GN=rpoK PE=3 SV=1
Length = 57
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 14 KRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
RYE+AR LG RALQ+A APV++E E T P+ IA +E A +P + R
Sbjct: 6 SRYEKARKLGARALQLAHGAPVLIETE-HTQPILIAAEEYDAGVLPFTVNR 55
>sp|P62015|RPOK_PYRHO DNA-directed RNA polymerase subunit K OS=Pyrococcus horikoshii
(strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC
100139 / OT-3) GN=rpoK PE=3 SV=1
Length = 57
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 35/50 (70%)
Query: 15 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
R+E+AR++G RALQIAM APV++++ PL+ A+ E + IPI + R
Sbjct: 6 RFEKARIIGARALQIAMGAPVLIDVPEGITPLEAAIMEFEKGVIPITVIR 55
>sp|P62014|RPOK_PYRAB DNA-directed RNA polymerase subunit K OS=Pyrococcus abyssi
(strain GE5 / Orsay) GN=rpoK PE=3 SV=1
Length = 57
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 35/50 (70%)
Query: 15 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
R+E+AR++G RALQIAM APV++++ PL+ A+ E + IPI + R
Sbjct: 6 RFEKARIIGARALQIAMGAPVLIDVPEGITPLEAAIMEFEKGVIPITVIR 55
>sp|Q8U0E8|RPOK_PYRFU DNA-directed RNA polymerase subunit K OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=rpoK
PE=3 SV=1
Length = 57
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 35/50 (70%)
Query: 15 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
R+E+AR++G RALQI+M APV++++ PL+ A+ E + IPI + R
Sbjct: 6 RFEKARIIGARALQISMGAPVLIDVPPGITPLEAAILEFEKGVIPITVIR 55
>sp|B6YSQ8|RPOK_THEON DNA-directed RNA polymerase subunit K OS=Thermococcus onnurineus
(strain NA1) GN=rpoK PE=3 SV=1
Length = 57
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 34/50 (68%)
Query: 15 RYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRR 64
R+ERAR++G RALQIAM AP+++++ PL A+ E + IP+ + R
Sbjct: 6 RFERARIVGARALQIAMGAPILIDVPEGITPLDAALLEFEKGIIPLTVIR 55
>sp|Q972B1|RPOK_SULTO DNA-directed RNA polymerase subunit K OS=Sulfolobus tokodaii
(strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)
GN=rpoK PE=3 SV=1
Length = 86
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEG--ETDPLQIAMKELKARKIPIIIRRYLPDNS 70
+ +YE AR++ RALQ+AM A +++ D + IA +ELK +PI +RR P+
Sbjct: 15 LTKYEIARIISARALQLAMGASPLIDTNNLPFNDVISIAEEELKRGVLPITVRRVYPNGK 74
Query: 71 YE 72
E
Sbjct: 75 IE 76
>sp|P39463|RPOK_SULAC DNA-directed RNA polymerase subunit K OS=Sulfolobus
acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929
/ NBRC 15157 / NCIMB 11770) GN=rpoK PE=3 SV=2
Length = 89
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEG--ETDPLQIAMKELKARKIPIIIRRYLPDNS 70
+ +YE AR++ RALQ++M A +++ D + IA +ELK +PI IRR P+
Sbjct: 18 LTKYEIARIISARALQLSMGALPLIDTSNLKSDDVISIAEEELKRGVLPITIRRIYPNGQ 77
Query: 71 YE 72
E
Sbjct: 78 VE 79
>sp|Q6L1M4|RPOK_PICTO DNA-directed RNA polymerase subunit K OS=Picrophilus torridus
(strain ATCC 700027 / DSM 9790 / JCM 10055 / NBRC
100828) GN=rpoK PE=3 SV=1
Length = 60
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPV-MVELEGETDPLQIAMKELKARKIPIIIRR 64
+I +++ ++E+AR++G RALQIAM APV + DP+ IAM E + IPI I+R
Sbjct: 1 MIFMILTKFEKARIIGARALQIAMGAPVIIDISPDIIDPIDIAMIEFENNVIPITIKR 58
>sp|P0C9D9|RPB6_ASFK5 DNA-directed RNA polymerase subunit 6 homolog OS=African swine
fever virus (isolate Pig/Kenya/KEN-50/1950) GN=Ken-081
PE=3 SV=1
Length = 147
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYL- 66
I + V+ +E R++ RA Q+A+ M++ + + P+ IA +EL RKIP+++ R +
Sbjct: 66 ITSNVLTTFEATRLVAVRAQQLAINGSTMLK-KKYSSPIDIAKQELFNRKIPLLVMRCIK 124
Query: 67 --PDNS--YEDWGIDELKI 81
PD E W E+ I
Sbjct: 125 VTPDGQKIVEIWNPREMGI 143
>sp|P0C9D8|RPB6_ASFWA DNA-directed RNA polymerase subunit 6 homolog OS=African swine
fever virus (isolate Warthog/Namibia/Wart80/1980)
GN=War-079 PE=3 SV=1
Length = 147
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYL- 66
I + V+ +E R++ RA Q+A+ M++ + + P+ IA +EL RKIP+++ R +
Sbjct: 66 ITSNVLTTFEATRLVAVRAQQLAINGSTMLK-KKYSSPIDIAKQELFNRKIPLLVMRCIK 124
Query: 67 --PDNS--YEDWGIDELKI 81
PD E W E+ I
Sbjct: 125 VTPDGQKIVEIWNPREMGI 143
>sp|P0C9D7|RPB6_ASFP4 DNA-directed RNA polymerase subunit 6 homolog OS=African swine
fever virus (isolate Tick/South Africa/Pretoriuskop
Pr4/1996) GN=Pret-081 PE=3 SV=1
Length = 147
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYL- 66
I + V+ +E R++ RA Q+A+ M++ + + P+ IA +EL RKIP+++ R +
Sbjct: 66 ITSNVLTTFEATRLVAVRAQQLAINGSTMLK-KKYSSPIDIAKQELFNRKIPLLVMRCIK 124
Query: 67 --PDNS--YEDWGIDELKI 81
PD E W E+ I
Sbjct: 125 VTPDGQKIVEIWNPREMGI 143
>sp|P0C9D6|RPB6_ASFM2 DNA-directed RNA polymerase subunit 6 homolog OS=African swine
fever virus (isolate Tick/Malawi/Lil 20-1/1983)
GN=Mal-077 PE=3 SV=1
Length = 151
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYL 66
I + V+ +E R++ RA Q+A+ M++ + + P+ IA +EL RKIP+++ R +
Sbjct: 70 ITSNVLTTFEATRLVAVRAQQLAINGSTMLK-KKYSSPIDIAKQELFNRKIPLLVMRCI 127
>sp|P42484|RPB6_ASFB7 DNA-directed RNA polymerase subunit 6 homolog OS=African swine
fever virus (strain Badajoz 1971 Vero-adapted)
GN=Ba71V-069 PE=3 SV=1
Length = 147
Score = 36.2 bits (82), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYL 66
I + V+ +E R++ RA Q+A+ M++ + + P+ IA +EL RKIP+++ R +
Sbjct: 66 ITSNVLTTFEATRLVAVRAQQLAINGSTMLK-KKYSSPIDIAKQELFNRKIPLLVMRCI 123
>sp|Q08399|RPO6_ASFM2 DNA-directed RNA polymerase subunit 6 homolog OS=African swine
fever virus (isolate Tick/Malawi/Lil 20-1/1983)
GN=PMWK-CL PE=3 SV=1
Length = 139
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 8 IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYL 66
I + V+ +E R++ RA Q+A+ M++ + + P+ IA +EL RKIP+++ R +
Sbjct: 70 ITSNVLTTFEATRLVAVRAQQLAINGSTMLK-KKYSSPIDIAKQELFNRKIPLLVMRCI 127
>sp|Q57650|RPOK_METJA DNA-directed RNA polymerase subunit K OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=rpoK PE=3 SV=1
Length = 57
Score = 35.8 bits (81), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Query: 13 IKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPI 60
+ ++E AR+LG R+LQI+ A +E + ++ L+IA +E+K K+P+
Sbjct: 3 LTKFEIARILGARSLQISSGAYATIETKCDSS-LKIAYEEIKQGKVPL 49
>sp|B0U6W4|RPOZ_XYLFM DNA-directed RNA polymerase subunit omega OS=Xylella fastidiosa
(strain M12) GN=rpoZ PE=3 SV=1
Length = 98
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 9 ITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKI 58
+ +V R+E + RA Q+A P ++E E P +A++E+ ARKI
Sbjct: 10 LEVVNNRFELVMMASKRARQLANGVPPLIENNSEDKPTVLALREIAARKI 59
>sp|Q87DG6|RPOZ_XYLFT DNA-directed RNA polymerase subunit omega OS=Xylella fastidiosa
(strain Temecula1 / ATCC 700964) GN=rpoZ PE=3 SV=1
Length = 99
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 9 ITIVIKRYERARVLGTRALQIAMCAPVMVE-LEGETDPLQIAMKELKARKI 58
+ +V R+E + RA Q+A P ++E E P +A++E+ ARKI
Sbjct: 10 LEVVNNRFELVMMASKRARQLANGVPPLIENTNSEDKPTVMALREIAARKI 60
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.143 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,184,911
Number of Sequences: 539616
Number of extensions: 966938
Number of successful extensions: 2942
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 2884
Number of HSP's gapped (non-prelim): 61
length of query: 84
length of database: 191,569,459
effective HSP length: 55
effective length of query: 29
effective length of database: 161,890,579
effective search space: 4694826791
effective search space used: 4694826791
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)