RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy548
         (84 letters)



>d1qkla_ a.143.1.2 (A:) RPB6 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 127

 Score =  111 bits (279), Expect = 4e-34
 Identities = 65/76 (85%), Positives = 68/76 (89%)

Query: 8   IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
           I T  + +YERARVLGTRALQIAMCAPVMVELEGETDPL IAMKELKARKIPIIIRRYLP
Sbjct: 52  ITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLP 111

Query: 68  DNSYEDWGIDELKIID 83
           D SYEDWG+DEL I D
Sbjct: 112 DGSYEDWGVDELIITD 127


>d1twff_ a.143.1.2 (F:) RPB6 {Baker's yeast (Saccharomyces
          cerevisiae) [TaxId: 4932]}
          Length = 84

 Score =  105 bits (264), Expect = 2e-32
 Identities = 49/74 (66%), Positives = 62/74 (83%)

Query: 8  IITIVIKRYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLP 67
            T  + +YERAR+LGTRALQI+M APV V+LEGETDPL+IAMKEL  +KIP++IRRYLP
Sbjct: 9  ATTPYMTKYERARILGTRALQISMNAPVFVDLEGETDPLRIAMKELAEKKIPLVIRRYLP 68

Query: 68 DNSYEDWGIDELKI 81
          D S+EDW ++EL +
Sbjct: 69 DGSFEDWSVEELIV 82


>d1rh1a1 b.110.1.1 (A:10-312) Colicin B N-terminal domain
          {Escherichia coli [TaxId: 562]}
          Length = 303

 Score = 23.8 bits (51), Expect = 3.1
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 4/44 (9%)

Query: 33 APVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDNSYE--DW 74
          AP M    G+  P  IA+  +++   P IIRR + D   E  DW
Sbjct: 33 APSMPPGWGDYSPQGIAL--VQSVLFPGIIRRIILDKELEEGDW 74


>d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of
          imidazoleglycerolphosphate synthase HisF {Baker's yeast
          (Saccharomyces cerevisiae), His7 [TaxId: 4932]}
          Length = 323

 Score = 24.0 bits (51), Expect = 3.3
 Identities = 4/13 (30%), Positives = 7/13 (53%)

Query: 71 YEDWGIDELKIID 83
          Y   G DE+  ++
Sbjct: 57 YYQQGADEVTFLN 69


>d2j43a1 b.3.1.3 (A:5-111) Pullulanase PulA {Streptococcus
          pyogenes [TaxId: 1314]}
          Length = 107

 Score = 23.3 bits (50), Expect = 3.9
 Identities = 2/14 (14%), Positives = 4/14 (28%)

Query: 63 RRYLPDNSYEDWGI 76
          +      S    G+
Sbjct: 10 KTLPAGESLGSLGL 23


>d1epwa2 b.42.4.2 (A:1080-1290) Botulinum neurotoxin {Clostridium
          botulinum, serotype B [TaxId: 1491]}
          Length = 211

 Score = 22.9 bits (49), Expect = 6.1
 Identities = 6/16 (37%), Positives = 6/16 (37%)

Query: 58 IPIIIRRYLPDNSYED 73
             IIRR     S  D
Sbjct: 63 EKFIIRRKSNSQSIND 78


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.143    0.414 

Gapped
Lambda     K      H
   0.267   0.0499    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 353,579
Number of extensions: 14487
Number of successful extensions: 66
Number of sequences better than 10.0: 1
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 19
Length of query: 84
Length of database: 2,407,596
Length adjustment: 49
Effective length of query: 35
Effective length of database: 1,734,826
Effective search space: 60718910
Effective search space used: 60718910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.4 bits)