BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5480
(446 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q77373|POL_HV1AN Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group O
(isolate ANT70) GN=gag-pol PE=3 SV=3
Length = 1435
Score = 43.1 bits (100), Expect = 0.004, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 10/82 (12%)
Query: 190 SELIAVLLCLKHLKFLPKEKFVVISDSKSTLLALSN-PSNT-NPIVSLIHSCWTDLLCYG 247
+EL+A+LL L+ KE +++DS+ L +S+ P+ + +PIV I + L
Sbjct: 1063 AELMAILLALQD----SKETVNIVTDSQYALGVISSQPTQSESPIVQQI----IEELTKK 1114
Query: 248 KQLAFLWCPSHTGIQGNEAVDR 269
+Q+ W P+H GI GNE +D+
Sbjct: 1115 EQVYLTWVPAHKGIGGNEKIDK 1136
>sp|Q79666|POL_HV1MV Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group O
(isolate MVP5180) GN=gag-pol PE=3 SV=3
Length = 1446
Score = 41.6 bits (96), Expect = 0.011, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 47/82 (57%), Gaps = 10/82 (12%)
Query: 190 SELIAVLLCLKHLKFLPKEKFVVISDSKSTL-LALSNPSNTN-PIVSLIHSCWTDLLCYG 247
+EL+AVL+ L+ KE+ +++DS+ L + S P+ ++ PIV I + L
Sbjct: 1065 AELMAVLIALQD----SKEQVNIVTDSQYVLGIISSQPTQSDSPIVQQI----IEELTKK 1116
Query: 248 KQLAFLWCPSHTGIQGNEAVDR 269
+++ W P+H GI GNE +D+
Sbjct: 1117 ERVYLTWVPAHKGIGGNEKIDK 1138
>sp|P31822|POL_FIVT2 Pol polyprotein OS=Feline immunodeficiency virus (isolate TM2)
GN=pol PE=3 SV=1
Length = 1124
Score = 40.8 bits (94), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 52/119 (43%), Gaps = 16/119 (13%)
Query: 155 FTDGS-KTANNTSCAYIIDKTLISSFVLNNVNSVYTSELIAVLLCLKHLKFLPKEKFVVI 213
+ DGS K AY + + N +E+ A+LL LK E+ +I
Sbjct: 598 YIDGSRKQGKAARAAYWTNTGKWQIMEIEGSNQ--KAEVQALLLALK----AGSEEMNII 651
Query: 214 SDSKSTLLALSNPSNTNPIVSLIHSCWTDLL-CYGKQLAFL--WCPSHTGIQGNEAVDR 269
+DS+ L N N P L+ W ++L K++A W P H GI GNE VD+
Sbjct: 652 TDSQYIL----NILNQQP--DLMEGLWQEVLEQMEKKIAIFIDWVPGHKGIPGNEEVDK 704
>sp|P16088|POL_FIVPE Pol polyprotein OS=Feline immunodeficiency virus (isolate Petaluma)
GN=pol PE=1 SV=1
Length = 1124
Score = 40.0 bits (92), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 49/122 (40%), Gaps = 17/122 (13%)
Query: 152 TLCFTDGSKTANNTSCAYIIDKTLISSFVLNNVNSVYTSELIAVLLCLKHLKFLPKEKFV 211
T G K AY D L N +E+ A+LL LK E+
Sbjct: 597 TWYIDGGRKLGKAAKAAYWTDTGKWRVMDLEGSNQ--KAEIQALLLALKA----GSEEMN 650
Query: 212 VISDSKSTL-LALSNPSNTNPIVSLIHSCWTDLL--CYGKQLAFL-WCPSHTGIQGNEAV 267
+I+DS+ + + L P ++ W ++L K F+ W P H GI GNE V
Sbjct: 651 IITDSQYVINIILQQPD-------MMEGIWQEVLEELEKKTAIFIDWVPGHKGIPGNEEV 703
Query: 268 DR 269
D+
Sbjct: 704 DK 705
>sp|P19028|POL_FIVSD Pol polyprotein OS=Feline immunodeficiency virus (strain San Diego)
GN=pol PE=3 SV=1
Length = 1124
Score = 40.0 bits (92), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 48/121 (39%), Gaps = 15/121 (12%)
Query: 152 TLCFTDGSKTANNTSCAYIIDKTLISSFVLNNVNSVYTSELIAVLLCLKHLKFLPKEKFV 211
T G K AY D L N +E+ A+LL LK E+
Sbjct: 597 TWYIDGGRKLGKAAKAAYWTDTGKWQVMELEGSNQ--KAEIQALLLALK----AGPEEMN 650
Query: 212 VISDSKSTLLALSNPSNTNPIVSLIHSCWTDLL--CYGKQLAFL-WCPSHTGIQGNEAVD 268
+I+DS+ + LS + + W ++L K F+ W P H GI GNE VD
Sbjct: 651 IITDSQYMINILSQQPDK------MEGIWQEVLEELEKKTAIFIDWVPGHKGIPGNEEVD 704
Query: 269 R 269
+
Sbjct: 705 K 705
>sp|P19560|POL_BIV29 Gag-Pol polyprotein OS=Bovine immunodeficiency virus (strain R29)
GN=gag-pol PE=1 SV=2
Length = 1475
Score = 40.0 bits (92), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 54/141 (38%), Gaps = 17/141 (12%)
Query: 149 QDFTLCFTDGSKTANNTSCAYIIDKTLISSFVLNNVNSVYTSELIAVLLCLKHLKFLPKE 208
++ T +TDG K + Y + S V N +EL A+ C+ L PK
Sbjct: 1000 ENLTTYYTDGGKKGKTAAAVYWCEGR-TKSKVFPGTNQ--QAELKAI--CMALLDGPPK- 1053
Query: 209 KFVVISDSKSTLLALSNPSNTNPIVSLIHSCWTDL---LCYGKQLAFLWCPSHTGIQGNE 265
+I+DS+ + P W ++ L + + + W P+H GI GN
Sbjct: 1054 -MNIITDSRYAYEGMRE----EPETWAREGIWLEIAKILPFKQYVGVGWVPAHKGIGGNT 1108
Query: 266 AVDRAARNPSASLPPLKLCSP 286
D + + P CSP
Sbjct: 1109 EADEGVKKALEQMAP---CSP 1126
>sp|P03371|POL_EIAVY Pol polyprotein OS=Equine infectious anemia virus (strain Wyoming)
GN=pol PE=3 SV=1
Length = 1145
Score = 39.3 bits (90), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 49/122 (40%), Gaps = 13/122 (10%)
Query: 155 FTDGSKTANNTSCAYIIDKTLISSFVLNNVNSVYTSELIAVLLCLKHLKFLPKEKFVVIS 214
+TDG K AY+ L V +E +A+ + L+ + ++ +++
Sbjct: 623 YTDGGKQNGEGIAAYVTSNGRTKQKRLGPVTH-QVAERMAIQMALEDTR---DKQVNIVT 678
Query: 215 DS----KSTLLALSNPSNTNPIVSLIHSCWTDLLCYGKQLAFLWCPSHTGIQGNEAVDRA 270
DS K+ L NP +I + + Y F W P H GI GN+ D A
Sbjct: 679 DSYYCWKNITEGLGLEGPQNPWWPIIQNIREKEIVY-----FAWVPGHKGIYGNQLADEA 733
Query: 271 AR 272
A+
Sbjct: 734 AK 735
>sp|P35956|POL_VILVK Pol polyprotein OS=Maedi visna virus (strain KV1772) GN=pol PE=1
SV=1
Length = 1101
Score = 39.3 bits (90), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 47/115 (40%), Gaps = 6/115 (5%)
Query: 155 FTDGSKTANNTSCAYIIDKTLISSFVLNNVNSVYTSELIAVLLCLKHLKFLPKEKFVVIS 214
+TDG K S YI F ++ + EL A+ K EK +++
Sbjct: 573 YTDGGKKNGRGSLGYITSTG--EKFRIHEEGTNQQLELRAIEEACKQ----GPEKMNIVT 626
Query: 215 DSKSTLLALSNPSNTNPIVSLIHSCWTDLLCYGKQLAFLWCPSHTGIQGNEAVDR 269
DS+ + + I + I + +L+ +++ W P H GI NE +DR
Sbjct: 627 DSRYAYEFMLRNWDEEVIRNPIQARIMELVHNKEKIGVHWVPGHKGIPQNEEIDR 681
>sp|P23427|POL_VILV2 Pol polyprotein OS=Maedi visna virus (strain 1514 / clone LV1-1KS2)
GN=pol PE=3 SV=1
Length = 1105
Score = 39.3 bits (90), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 47/115 (40%), Gaps = 6/115 (5%)
Query: 155 FTDGSKTANNTSCAYIIDKTLISSFVLNNVNSVYTSELIAVLLCLKHLKFLPKEKFVVIS 214
+TDG K S YI F ++ + EL A+ K EK +++
Sbjct: 577 YTDGGKKNGRGSLGYIASTG--EKFRIHEEGTNQQLELRAIEEACKQ----GPEKMNIVT 630
Query: 215 DSKSTLLALSNPSNTNPIVSLIHSCWTDLLCYGKQLAFLWCPSHTGIQGNEAVDR 269
DS+ + + I + I + +L+ +++ W P H GI NE +DR
Sbjct: 631 DSRYAYEFMLRNWDEEVIRNPIQARIMELVHNKEKIGVHWVPGHKGIPQNEEIDR 685
>sp|P03370|POL_VILV Pol polyprotein OS=Maedi visna virus (strain 1514) GN=pol PE=3 SV=1
Length = 1105
Score = 39.3 bits (90), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 47/115 (40%), Gaps = 6/115 (5%)
Query: 155 FTDGSKTANNTSCAYIIDKTLISSFVLNNVNSVYTSELIAVLLCLKHLKFLPKEKFVVIS 214
+TDG K S YI F ++ + EL A+ K EK +++
Sbjct: 577 YTDGGKKNGRGSLGYIASTG--EKFRIHEEGTNQQLELRAIEEACKQ----GPEKMNIVT 630
Query: 215 DSKSTLLALSNPSNTNPIVSLIHSCWTDLLCYGKQLAFLWCPSHTGIQGNEAVDR 269
DS+ + + I + I + +L+ +++ W P H GI NE +DR
Sbjct: 631 DSRYAYEFMLRNWDEEVIRNPIQARIMELVHNKEKIGVHWVPGHKGIPQNEEIDR 685
>sp|P22382|POL_SIVGB Gag-Pol polyprotein OS=Simian immunodeficiency virus (isolate GB1)
GN=gag-pol PE=3 SV=2
Length = 1441
Score = 38.5 bits (88), Expect = 0.12, Method: Composition-based stats.
Identities = 41/149 (27%), Positives = 71/149 (47%), Gaps = 21/149 (14%)
Query: 129 ENVSSVVFQQRFHELVQSKYQDFTLCFTDGSKTANNT--SCAYIIDKTL--ISSFVLNNV 184
E +S+ + ++ ++ L + + DG+ ++ YI D+ + + LN
Sbjct: 1011 EFISTPMLEREWYSLSPEPLEGVETYYVDGAANRDSKMGKAGYITDRGFQRVEEY-LNTT 1069
Query: 185 NSVYTSELIAVLLCLKHLKFLPKEKFV-VISDSKSTLLAL-SNPSNTN-PIVSLIHSCWT 241
N +EL AV L L+ +V +++DS+ + L S P+ T+ PIV I
Sbjct: 1070 NQ--QTELHAVKLALED-----SGSYVNIVTDSQYVVGILASRPTETDHPIVKEIIE--- 1119
Query: 242 DLLCYGKQLAFL-WCPSHTGIQGNEAVDR 269
L GK+ +L W P+H GI GNE +D+
Sbjct: 1120 --LMKGKEKIYLSWLPAHKGIGGNEQIDK 1146
>sp|Q02836|POL_SIVG1 Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.grivet
(isolate AGM gr-1) GN=gag-pol PE=3 SV=2
Length = 1472
Score = 35.0 bits (79), Expect = 1.0, Method: Composition-based stats.
Identities = 36/145 (24%), Positives = 65/145 (44%), Gaps = 13/145 (8%)
Query: 129 ENVSSVVFQQRFHELVQSKYQDFTLCFTDG--SKTANNTSCAYIIDKTLISSFVLNNVNS 186
E VS+ + + ++ LV+ + + + DG SK Y+ ++ L N +
Sbjct: 1024 EFVSTPLLVKLWYSLVKEPIKGEDVYYVDGAASKVTKLGKAGYLSERGKSRIRELENTTN 1083
Query: 187 VYTSELIAVLLCLKHLKFLPKEKFVVISDSKSTLLALSN-PSNTN-PIVSLIHSCWTDLL 244
+EL AV + L+ E +++DS+ + L+ P +N P+V I L
Sbjct: 1084 -QQAELTAVKMALED----SGENVNIVTDSQYVMNILTACPQESNSPLVEQI----IQAL 1134
Query: 245 CYGKQLAFLWCPSHTGIQGNEAVDR 269
+Q+ W P+H GI GN +D+
Sbjct: 1135 MKKRQVYLQWVPAHKGIGGNTEIDK 1159
>sp|Q49622|NADA_MYCLE Quinolinate synthase A OS=Mycobacterium leprae (strain TN) GN=nadA
PE=3 SV=2
Length = 352
Score = 34.3 bits (77), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Query: 247 GKQLAFLW---CPSHTGIQGNEAVDRAARNPSASL 278
G++ ++W C H GI G+E VD+A NP A L
Sbjct: 193 GRKNVYVWMGECHVHAGINGDELVDQARANPDAEL 227
>sp|B8ZR90|NADA_MYCLB Quinolinate synthase A OS=Mycobacterium leprae (strain Br4923)
GN=nadA PE=3 SV=1
Length = 352
Score = 34.3 bits (77), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Query: 247 GKQLAFLW---CPSHTGIQGNEAVDRAARNPSASL 278
G++ ++W C H GI G+E VD+A NP A L
Sbjct: 193 GRKNVYVWMGECHVHAGINGDELVDQARANPDAEL 227
>sp|P05895|POL_SIVVT Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM TYO-1) GN=gag-pol PE=3 SV=2
Length = 1467
Score = 33.9 bits (76), Expect = 2.6, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 35/60 (58%), Gaps = 6/60 (10%)
Query: 212 VISDSKSTLLALS-NPSNTN-PIVSLIHSCWTDLLCYGKQLAFLWCPSHTGIQGNEAVDR 269
+++DS+ + L+ P+ ++ P+V I + L+ +Q+ W P+H GI GNE +D+
Sbjct: 1111 IVTDSQYAMGILTAQPTQSDSPLVEQIIA----LMIQKQQIYLQWVPAHKGIGGNEEIDK 1166
>sp|P59081|SYM_THEEB Methionine--tRNA ligase OS=Thermosynechococcus elongatus (strain
BP-1) GN=metG PE=3 SV=1
Length = 529
Score = 33.9 bits (76), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
Query: 360 RQSRYEEVVICRMRIGHTRATHGHLFKRAPPSTCRCGETLSVQHILTCTLHGHIRASLPA 419
RQ + EV C+ + RA + L + AP R GET +V IL C L +
Sbjct: 406 RQLAFHEV--CQQALTLARAGNKFLDEEAPWKRYRAGETAAVAEILYCVLESVRLVAYVL 463
Query: 420 PPALTDDVESVDSMLKYLKKLN 441
P + E++ L Y + N
Sbjct: 464 APIIPQLSEAIYGQLGYSIRFN 485
>sp|P15833|POL_HV2D2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 2 subtype B
(isolate D205) GN=gag-pol PE=3 SV=3
Length = 1465
Score = 33.5 bits (75), Expect = 3.1, Method: Composition-based stats.
Identities = 32/130 (24%), Positives = 56/130 (43%), Gaps = 9/130 (6%)
Query: 141 HELVQSKYQDFTLCFTDGS--KTANNTSCAYIIDKTLISSFVLNNVNSVYTSELIAVLLC 198
+ LV+ + +TDGS +T+ Y+ D+ VL + +EL A L
Sbjct: 1036 YNLVKDPLEGRETYYTDGSCNRTSKEGKAGYVTDRGKDKVKVLEQTTN-QQAELEAFALA 1094
Query: 199 LKHLKFLPKEKFVVISDSKSTLLALSNPSNTNPIVSLIHSCWTDLLCYGKQLAFLWCPSH 258
L + P+ +V S ++A +PIV+ I + + + + W P+H
Sbjct: 1095 LTDSE--PQVNIIVDSQYVMGIIAAQPTETESPIVAKI----IEEMIKKEAVYVGWVPAH 1148
Query: 259 TGIQGNEAVD 268
G+ GN+ VD
Sbjct: 1149 KGLGGNQEVD 1158
>sp|Q8P6N0|PQQB_XANCP Coenzyme PQQ synthesis protein B OS=Xanthomonas campestris pv.
campestris (strain ATCC 33913 / NCPPB 528 / LMG 568)
GN=pqqB PE=3 SV=1
Length = 299
Score = 32.7 bits (73), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 7/72 (9%)
Query: 20 ALRSSPIPSLLVESG-----VPPLQLRRSQ-LAMSYAVKIASCPA-NPTYSLLFPDNIDA 72
LR SPI S+L+ SG L +R SQ ++ + ++ A NP + L P +D
Sbjct: 75 GLRHSPIESVLLTSGEIDHIAGLLSMRESQRFSLHASSRVLDLLAQNPIFDALNPQYVDR 134
Query: 73 DIYPLNKPKPLC 84
+ LN P LC
Sbjct: 135 HPFALNTPLTLC 146
>sp|B0RQ28|PQQB_XANCB Coenzyme PQQ synthesis protein B OS=Xanthomonas campestris pv.
campestris (strain B100) GN=pqqB PE=3 SV=1
Length = 299
Score = 32.7 bits (73), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 7/72 (9%)
Query: 20 ALRSSPIPSLLVESG-----VPPLQLRRSQ-LAMSYAVKIASCPA-NPTYSLLFPDNIDA 72
LR SPI S+L+ SG L +R SQ ++ + ++ A NP + L P +D
Sbjct: 75 GLRHSPIESVLLTSGEIDHIAGLLSMRESQRFSLHASSRVLDLLAQNPIFDALNPQYVDR 134
Query: 73 DIYPLNKPKPLC 84
+ LN P LC
Sbjct: 135 HPFALNTPLTLC 146
>sp|Q4UXI1|PQQB_XANC8 Coenzyme PQQ synthesis protein B OS=Xanthomonas campestris pv.
campestris (strain 8004) GN=pqqB PE=3 SV=1
Length = 299
Score = 32.7 bits (73), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 7/72 (9%)
Query: 20 ALRSSPIPSLLVESG-----VPPLQLRRSQ-LAMSYAVKIASCPA-NPTYSLLFPDNIDA 72
LR SPI S+L+ SG L +R SQ ++ + ++ A NP + L P +D
Sbjct: 75 GLRHSPIESVLLTSGEIDHIAGLLSMRESQRFSLHASSRVLDLLAQNPIFDALNPQYVDR 134
Query: 73 DIYPLNKPKPLC 84
+ LN P LC
Sbjct: 135 HPFALNTPLTLC 146
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 166,111,794
Number of Sequences: 539616
Number of extensions: 6779809
Number of successful extensions: 14851
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 14847
Number of HSP's gapped (non-prelim): 32
length of query: 446
length of database: 191,569,459
effective HSP length: 121
effective length of query: 325
effective length of database: 126,275,923
effective search space: 41039674975
effective search space used: 41039674975
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)