Query psy5480
Match_columns 446
No_of_seqs 275 out of 1710
Neff 7.9
Searched_HMMs 46136
Date Fri Aug 16 18:37:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5480.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5480hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK06548 ribonuclease H; Provi 99.9 9.5E-22 2.1E-26 174.9 12.2 123 150-275 4-140 (161)
2 PF00075 RNase_H: RNase H; In 99.9 6.2E-22 1.3E-26 171.5 10.2 117 150-274 2-130 (132)
3 PRK08719 ribonuclease H; Revie 99.9 2.1E-21 4.5E-26 171.2 13.3 120 150-274 3-144 (147)
4 COG0328 RnhA Ribonuclease HI [ 99.9 5.8E-21 1.3E-25 166.9 13.2 124 150-274 2-142 (154)
5 PRK00203 rnhA ribonuclease H; 99.8 3.8E-20 8.3E-25 164.3 12.3 121 151-274 3-139 (150)
6 cd06222 RnaseH RNase H (RNase 99.7 4.7E-17 1E-21 137.7 14.3 121 153-273 1-128 (130)
7 KOG3752|consensus 99.7 6.4E-17 1.4E-21 157.7 10.1 126 149-274 210-362 (371)
8 PRK13907 rnhA ribonuclease H; 99.7 2.2E-16 4.8E-21 136.4 12.4 118 152-274 2-124 (128)
9 PRK07708 hypothetical protein; 99.6 3.8E-14 8.3E-19 132.8 14.3 125 147-275 69-206 (219)
10 PRK07238 bifunctional RNase H/ 99.4 8.6E-13 1.9E-17 134.4 13.4 119 151-274 2-129 (372)
11 PF13456 RVT_3: Reverse transc 99.2 1.9E-10 4.1E-15 91.7 9.0 83 187-273 1-83 (87)
12 PF13966 zf-RVT: zinc-binding 95.4 0.0072 1.6E-07 48.1 1.3 29 384-412 53-84 (86)
13 PF05380 Peptidase_A17: Pao re 68.7 15 0.00033 32.5 6.3 53 150-204 80-143 (159)
14 PF00336 DNA_pol_viral_C: DNA 53.9 16 0.00034 33.8 3.6 90 149-257 92-182 (245)
15 COG0296 GlgB 1,4-alpha-glucan 49.3 22 0.00047 38.8 4.4 35 233-267 213-247 (628)
16 PF05741 zf-nanos: Nanos RNA b 39.0 14 0.0003 26.8 0.7 19 391-409 34-54 (55)
17 PRK10933 trehalose-6-phosphate 36.9 77 0.0017 34.2 6.3 72 190-261 30-108 (551)
18 PF08274 PhnA_Zn_Ribbon: PhnA 34.6 12 0.00027 23.5 -0.1 19 391-409 3-24 (30)
19 COG4047 Uncharacterized protei 28.8 47 0.001 30.8 2.5 41 8-54 150-198 (243)
20 smart00642 Aamy Alpha-amylase 26.7 1.7E+02 0.0037 26.1 5.9 30 232-261 68-97 (166)
21 COG3341 Predicted double-stran 25.6 49 0.0011 30.9 2.1 86 184-274 105-198 (225)
22 KOG1812|consensus 20.8 2E+02 0.0042 29.6 5.6 42 184-225 46-87 (384)
23 PRK10860 tRNA-specific adenosi 20.8 3.2E+02 0.007 24.6 6.4 29 187-215 60-88 (172)
No 1
>PRK06548 ribonuclease H; Provisional
Probab=99.87 E-value=9.5e-22 Score=174.87 Aligned_cols=123 Identities=26% Similarity=0.316 Sum_probs=92.4
Q ss_pred CcEEEEEcCCcCCC--CceEEEEEcCCeEEEEecCCccchhHHHHHHHHHHHHHhhcCCCCceEEEechHHHHHHhcC--
Q psy5480 150 DFTLCFTDGSKTAN--NTSCAYIIDKTLISSFVLNNVNSVYTSELIAVLLCLKHLKFLPKEKFVVISDSKSTLLALSN-- 225 (446)
Q Consensus 150 ~~~~iyTDGS~~~~--~~G~g~v~~~~~~~~~~l~~~~t~~~AEl~Ai~~AL~~~~~~~~~~i~I~tDS~~ai~~l~~-- 225 (446)
..+.||||||+..+ .+|+|+++......+.. ....||+.|||+||+.||+.+.. ....|.|+|||+++++++..
T Consensus 4 ~~~~IytDGa~~gnpg~~G~g~~~~~~~~~~g~-~~~~TNnraEl~Aii~aL~~~~~-~~~~v~I~TDS~yvi~~i~~W~ 81 (161)
T PRK06548 4 NEIIAATDGSSLANPGPSGWAWYVDENTWDSGG-WDIATNNIAELTAVRELLIATRH-TDRPILILSDSKYVINSLTKWV 81 (161)
T ss_pred CEEEEEEeeccCCCCCceEEEEEEeCCcEEccC-CCCCCHHHHHHHHHHHHHHhhhc-CCceEEEEeChHHHHHHHHHHH
Confidence 45899999998754 47888665443222222 34689999999999999986643 34579999999999999983
Q ss_pred -------CCCCC--hh-HHHHHHHHHHHHhcCceEEEEEcCCCCCCccchHhHHHhcCCC
Q psy5480 226 -------PSNTN--PI-VSLIHSCWTDLLCYGKQLAFLWCPSHTGIQGNEAVDRAARNPS 275 (446)
Q Consensus 226 -------~~~~~--~~-~~~i~~~~~~l~~~~~~V~~~WVpgH~gi~gNe~AD~lAk~a~ 275 (446)
+...+ ++ -+++.+.+..+... ..|+|.|||||+|++|||.||+||++++
T Consensus 82 ~~Wk~~gWk~s~G~pV~N~dL~~~l~~l~~~-~~v~~~wVkgHsg~~gNe~aD~LA~~aa 140 (161)
T PRK06548 82 YSWKMRKWRKADGKPVLNQEIIQEIDSLMEN-RNIRMSWVNAHTGHPLNEAADSLARQAA 140 (161)
T ss_pred HHHHHCCCcccCCCccccHHHHHHHHHHHhc-CceEEEEEecCCCCHHHHHHHHHHHHHH
Confidence 32222 32 35666666666444 4799999999999999999999999953
No 2
>PF00075 RNase_H: RNase H; InterPro: IPR002156 The RNase H domain is responsible for hydrolysis of the RNA portion of RNA x DNA hybrids, and this activity requires the presence of divalent cations (Mg2+ or Mn2+) that bind its active site. This domain is a part of a large family of homologous RNase H enzymes of which the RNase HI protein from Escherichia coli is the best characterised []. Secondary structure predictions for the enzymes from E. coli, yeast, human liver and diverse retroviruses (such as Rous sarcoma virus and the Foamy viruses) supported, in every case, the five beta-strands (1 to 5) and four or five alpha-helices (A, B/C, D, E) that have been identified by crystallography in the RNase H domain of Human immunodeficiency virus 1 (HIV-1) reverse transcriptase and in E. coli RNase H []. Reverse transcriptase (RT) is a modular enzyme carrying polymerase and ribonuclease H (RNase H) activities in separable domains. Reverse transcriptase (RT) converts the single-stranded RNA genome of a retrovirus into a double-stranded DNA copy for integration into the host genome. This process requires ribonuclease H as well as RNA- and DNA-directed DNA polymerase activities. Retroviral RNase H is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. Bacterial RNase H 3.1.26.4 from EC catalyses endonucleolytic cleavage to 5'-phosphomonoester acting on RNA-DNA hybrids. The 3D structure of the RNase H domain from diverse bacteria and retroviruses has been solved [, , ]. All have four beta strands and four to five alpha helices. The E. coli RNase H1 protein binds a single Mg2+ ion cofactor in the active site of the enzyme. The divalent cation is bound by the carboxyl groups of four acidic residues, Asp-10, Glu-48, Asp-70, and Asp-134 []. The first three acidic residues are highly conserved in all bacterial and retroviral RNase H sequences. ; GO: 0003676 nucleic acid binding, 0004523 ribonuclease H activity; PDB: 3LP3_B 2KW4_A 3P1G_A 1RIL_A 2RPI_A 4EQJ_G 4EP2_B 3OTY_P 3U3G_D 2ZQB_D ....
Probab=99.87 E-value=6.2e-22 Score=171.47 Aligned_cols=117 Identities=32% Similarity=0.433 Sum_probs=90.1
Q ss_pred CcEEEEEcCCcCCC--CceEEEEEcCCeEEEEecCCccchhHHHHHHHHHHHHHhhcCCCCceEEEechHHHHHHhcC--
Q psy5480 150 DFTLCFTDGSKTAN--NTSCAYIIDKTLISSFVLNNVNSVYTSELIAVLLCLKHLKFLPKEKFVVISDSKSTLLALSN-- 225 (446)
Q Consensus 150 ~~~~iyTDGS~~~~--~~G~g~v~~~~~~~~~~l~~~~t~~~AEl~Ai~~AL~~~~~~~~~~i~I~tDS~~ai~~l~~-- 225 (446)
+.+.||||||+..+ ..|+||++..+...+..++ ..|++.|||+||.+||+ +.. ..+++|+|||+++++.+..
T Consensus 2 ~~~~iytDgS~~~~~~~~~~g~v~~~~~~~~~~~~-~~s~~~aEl~Ai~~AL~-~~~--~~~v~I~tDS~~v~~~l~~~~ 77 (132)
T PF00075_consen 2 KAIIIYTDGSCRPNPGKGGAGYVVWGGRNFSFRLG-GQSNNRAELQAIIEALK-ALE--HRKVTIYTDSQYVLNALNKWL 77 (132)
T ss_dssp TSEEEEEEEEECTTTTEEEEEEEEETTEEEEEEEE-SECHHHHHHHHHHHHHH-THS--TSEEEEEES-HHHHHHHHTHH
T ss_pred CcEEEEEeCCccCCCCceEEEEEEECCeEEEeccc-ccchhhhheehHHHHHH-Hhh--cccccccccHHHHHHHHHHhc
Confidence 46899999997643 3677876554444455556 89999999999999999 443 3899999999999997777
Q ss_pred ---CCCCC----hhHHHHHHHHHHHHhcCceEEEEEcCCCCCC-ccchHhHHHhcCC
Q psy5480 226 ---PSNTN----PIVSLIHSCWTDLLCYGKQLAFLWCPSHTGI-QGNEAVDRAARNP 274 (446)
Q Consensus 226 ---~~~~~----~~~~~i~~~~~~l~~~~~~V~~~WVpgH~gi-~gNe~AD~lAk~a 274 (446)
..... ++..+|.+.+ ..+..|.|.|||||+|+ .|||.||+|||+|
T Consensus 78 ~~~~~~~~~~~~~i~~~i~~~~----~~~~~v~~~~V~~H~~~~~~N~~aD~lAk~a 130 (132)
T PF00075_consen 78 HGNGWKKTSNGRPIKNEIWELL----SRGIKVRFRWVPGHSGVPQGNERADRLAKEA 130 (132)
T ss_dssp HHTTSBSCTSSSBHTHHHHHHH----HHSSEEEEEESSSSSSSHHHHHHHHHHHHHH
T ss_pred cccccccccccccchhheeecc----ccceEEeeeeccCcCCCchhHHHHHHHHHHh
Confidence 33222 3445555554 55889999999999999 6999999999983
No 3
>PRK08719 ribonuclease H; Reviewed
Probab=99.86 E-value=2.1e-21 Score=171.19 Aligned_cols=120 Identities=21% Similarity=0.220 Sum_probs=91.3
Q ss_pred CcEEEEEcCCcCCCC-----ceEEEEE-cC--Ce--EEEEecCCccchhHHHHHHHHHHHHHhhcCCCCceEEEechHHH
Q psy5480 150 DFTLCFTDGSKTANN-----TSCAYII-DK--TL--ISSFVLNNVNSVYTSELIAVLLCLKHLKFLPKEKFVVISDSKST 219 (446)
Q Consensus 150 ~~~~iyTDGS~~~~~-----~G~g~v~-~~--~~--~~~~~l~~~~t~~~AEl~Ai~~AL~~~~~~~~~~i~I~tDS~~a 219 (446)
+.++||||||+..++ +|+|+++ +. .. ..+..+....|++.||+.|++.||+.+.+. ..|+|||+++
T Consensus 3 ~~~~iYtDGs~~~n~~~~~~~G~G~vv~~~~~~~~~~~~~~~~~~~Tnn~aEl~A~~~aL~~~~~~----~~i~tDS~yv 78 (147)
T PRK08719 3 ASYSIYIDGAAPNNQHGCVRGGIGLVVYDEAGEIVDEQSITVNRYTDNAELELLALIEALEYARDG----DVIYSDSDYC 78 (147)
T ss_pred ceEEEEEecccCCCCCCCCCcEEEEEEEeCCCCeeEEEEecCCCCccHHHHHHHHHHHHHHHcCCC----CEEEechHHH
Confidence 568999999996543 5888654 32 21 344456667899999999999999998652 4899999999
Q ss_pred HHHh--------cCCCCCC-h---hHHHHHHHHHHHHhcCceEEEEEcCCCCCCccchHhHHHhcCC
Q psy5480 220 LLAL--------SNPSNTN-P---IVSLIHSCWTDLLCYGKQLAFLWCPSHTGIQGNEAVDRAARNP 274 (446)
Q Consensus 220 i~~l--------~~~~~~~-~---~~~~i~~~~~~l~~~~~~V~~~WVpgH~gi~gNe~AD~lAk~a 274 (446)
++++ ++.+..+ + ...++++.+..+.. ...|.|.|||||+|++|||.||+||++|
T Consensus 79 i~~i~~~~~~W~~~~w~~s~g~~v~n~dl~~~i~~l~~-~~~i~~~~VkgH~g~~~Ne~aD~lA~~a 144 (147)
T PRK08719 79 VRGFNEWLDTWKQKGWRKSDKKPVANRDLWQQVDELRA-RKYVEVEKVTAHSGIEGNEAADMLAQAA 144 (147)
T ss_pred HHHHHHHHHHHHhCCcccCCCcccccHHHHHHHHHHhC-CCcEEEEEecCCCCChhHHHHHHHHHHH
Confidence 9998 3444322 2 13556666666645 5679999999999999999999999984
No 4
>COG0328 RnhA Ribonuclease HI [DNA replication, recombination, and repair]
Probab=99.85 E-value=5.8e-21 Score=166.93 Aligned_cols=124 Identities=22% Similarity=0.180 Sum_probs=99.0
Q ss_pred CcEEEEEcCCcCCC--CceEEEEEc-CCe--EEEEecCCccchhHHHHHHHHHHHHHhhcCCCCceEEEechHHHHHHhc
Q psy5480 150 DFTLCFTDGSKTAN--NTSCAYIID-KTL--ISSFVLNNVNSVYTSELIAVLLCLKHLKFLPKEKFVVISDSKSTLLALS 224 (446)
Q Consensus 150 ~~~~iyTDGS~~~~--~~G~g~v~~-~~~--~~~~~l~~~~t~~~AEl~Ai~~AL~~~~~~~~~~i~I~tDS~~ai~~l~ 224 (446)
..+.||||||+..+ ..|+|+|+. +.. ..+.... .+||+.+|++|++.||+.+.+.+...|.|+|||++++++|.
T Consensus 2 ~~v~if~DGa~~gNpG~gG~g~vl~~~~~~~~~s~~~~-~tTNNraEl~A~i~AL~~l~~~~~~~v~l~tDS~yv~~~i~ 80 (154)
T COG0328 2 KKVEIFTDGACLGNPGPGGWGAVLRYGDGEKELSGGEG-RTTNNRAELRALIEALEALKELGACEVTLYTDSKYVVEGIT 80 (154)
T ss_pred CceEEEecCccCCCCCCceEEEEEEcCCceEEEeeeee-cccChHHHHHHHHHHHHHHHhcCCceEEEEecHHHHHHHHH
Confidence 35899999999754 488996653 322 2444444 89999999999999999999888999999999999999998
Q ss_pred CCCC---C--------Ch-hHHHHHHHHHHHHhcCceEEEEEcCCCCCCccchHhHHHhcCC
Q psy5480 225 NPSN---T--------NP-IVSLIHSCWTDLLCYGKQLAFLWCPSHTGIQGNEAVDRAARNP 274 (446)
Q Consensus 225 ~~~~---~--------~~-~~~~i~~~~~~l~~~~~~V~~~WVpgH~gi~gNe~AD~lAk~a 274 (446)
.+.. . .| ...+++..+.++......|.+.|||||+|.++||.||+||+.+
T Consensus 81 ~w~~~w~~~~w~~~~~~pvkn~dl~~~~~~~~~~~~~v~~~WVkgH~g~~~NeraD~LA~~~ 142 (154)
T COG0328 81 RWIVKWKKNGWKTADKKPVKNKDLWEELDELLKRHELVFWEWVKGHAGHPENERADQLAREA 142 (154)
T ss_pred HHHhhccccCccccccCccccHHHHHHHHHHHhhCCeEEEEEeeCCCCChHHHHHHHHHHHH
Confidence 3311 1 12 2456677777776777799999999999999999999999993
No 5
>PRK00203 rnhA ribonuclease H; Reviewed
Probab=99.83 E-value=3.8e-20 Score=164.30 Aligned_cols=121 Identities=21% Similarity=0.193 Sum_probs=88.0
Q ss_pred cEEEEEcCCcCCC--CceEEEEE-cCCeEE-EEecCCccchhHHHHHHHHHHHHHhhcCCCCceEEEechHHHHHHhcCC
Q psy5480 151 FTLCFTDGSKTAN--NTSCAYII-DKTLIS-SFVLNNVNSVYTSELIAVLLCLKHLKFLPKEKFVVISDSKSTLLALSNP 226 (446)
Q Consensus 151 ~~~iyTDGS~~~~--~~G~g~v~-~~~~~~-~~~l~~~~t~~~AEl~Ai~~AL~~~~~~~~~~i~I~tDS~~ai~~l~~~ 226 (446)
.+.||||||+..+ .+|+|+|+ .++... ........|++.|||.|++.||+.+.+ ...+.|+|||++++++|..+
T Consensus 3 ~v~iytDGs~~~n~~~~g~g~v~~~~~~~~~~~~~~~~~TN~~aEL~Ai~~AL~~~~~--~~~v~I~tDS~yvi~~i~~w 80 (150)
T PRK00203 3 QVEIYTDGACLGNPGPGGWGAILRYKGHEKELSGGEALTTNNRMELMAAIEALEALKE--PCEVTLYTDSQYVRQGITEW 80 (150)
T ss_pred eEEEEEEecccCCCCceEEEEEEEECCeeEEEecCCCCCcHHHHHHHHHHHHHHHcCC--CCeEEEEECHHHHHHHHHHH
Confidence 4899999999743 47888654 333221 222234789999999999999998865 46799999999999998852
Q ss_pred --------C-CC--Chh-HHHHHHHHHHHHhcCceEEEEEcCCCCCCccchHhHHHhcCC
Q psy5480 227 --------S-NT--NPI-VSLIHSCWTDLLCYGKQLAFLWCPSHTGIQGNEAVDRAARNP 274 (446)
Q Consensus 227 --------~-~~--~~~-~~~i~~~~~~l~~~~~~V~~~WVpgH~gi~gNe~AD~lAk~a 274 (446)
+ .. .++ ..++.+.+..+.. ...|.|.|||||+|++||+.||+|||++
T Consensus 81 ~~~Wk~~~~~~~~g~~v~n~dl~~~i~~l~~-~~~v~~~wV~~H~~~~~N~~AD~lA~~a 139 (150)
T PRK00203 81 IHGWKKNGWKTADKKPVKNVDLWQRLDAALK-RHQIKWHWVKGHAGHPENERCDELARAG 139 (150)
T ss_pred HHHHHHcCCcccCCCccccHHHHHHHHHHhc-cCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 1 11 122 2334444444433 3789999999999999999999999994
No 6
>cd06222 RnaseH RNase H (RNase HI) is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a not sequence-specific manner. One of the important functions of RNase H is to remove Okazaki fragments during DNA replication. RNase H knockout mice lack mitochondrial DNA replication and die as embryos. The retroviral reverse transcriptase contains an RNase H domain that plays an important role in converting a single stranded retroviral genomic RNA into a dsDNA for integration into host chromosomes. RNase H inhibitors have been explored as an anti-HIV drug target because RNase H inactivation inhibits reverse transcription.
Probab=99.74 E-value=4.7e-17 Score=137.75 Aligned_cols=121 Identities=25% Similarity=0.304 Sum_probs=94.3
Q ss_pred EEEEcCCcCCC--CceEEEEEc-CCe--E-EEEecCCccchhHHHHHHHHHHHHHhhcCCCCceEEEechHHHHHHhcCC
Q psy5480 153 LCFTDGSKTAN--NTSCAYIID-KTL--I-SSFVLNNVNSVYTSELIAVLLCLKHLKFLPKEKFVVISDSKSTLLALSNP 226 (446)
Q Consensus 153 ~iyTDGS~~~~--~~G~g~v~~-~~~--~-~~~~l~~~~t~~~AEl~Ai~~AL~~~~~~~~~~i~I~tDS~~ai~~l~~~ 226 (446)
++|||||...+ ++|+|+++. .+. . .........+++.+|+.|++.||+.+...+..++.|++||+.++..+.+.
T Consensus 1 ~~~~Dgs~~~~~~~~g~g~v~~~~~~~~~~~~~~~~~~~s~~~aEl~al~~al~~~~~~~~~~i~i~~Ds~~~~~~~~~~ 80 (130)
T cd06222 1 VIYTDGSCRGNPGPAGAGVVLRDPGGEVLLSGGLLGGNTTNNRAELLALIEALELALELGGKKVNIYTDSQYVINALTGW 80 (130)
T ss_pred CEEecccCCCCCCceEEEEEEEeCCCeEEEeccccCCCCcHHHHHHHHHHHHHHHHHhCCCceEEEEECHHHHHHHhhcc
Confidence 48999998765 588886553 222 1 11112257899999999999999999888899999999999999999987
Q ss_pred CC-CChhHHHHHHHHHHHHhcCceEEEEEcCCCCCCccchHhHHHhcC
Q psy5480 227 SN-TNPIVSLIHSCWTDLLCYGKQLAFLWCPSHTGIQGNEAVDRAARN 273 (446)
Q Consensus 227 ~~-~~~~~~~i~~~~~~l~~~~~~V~~~WVpgH~gi~gNe~AD~lAk~ 273 (446)
.. .......+...+..+...+..+.|.|||+|+|+.+|+.||.|||+
T Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~~~i~~v~~h~~~~~n~~ad~la~~ 128 (130)
T cd06222 81 YEGKPVKNVDLWQRLLALLKRFHKVRFEWVPGHSGIEGNERADALAKE 128 (130)
T ss_pred ccCCChhhHHHHHHHHHHHhCCCeEEEEEcCCCCCCcchHHHHHHHHh
Confidence 65 223344444444444467889999999999999999999999998
No 7
>KOG3752|consensus
Probab=99.69 E-value=6.4e-17 Score=157.68 Aligned_cols=126 Identities=24% Similarity=0.215 Sum_probs=96.4
Q ss_pred CCcEEEEEcCCcCCC-----CceEEEE-EcCC-eEEEEecC-CccchhHHHHHHHHHHHHHhhcCCCCceEEEechHHHH
Q psy5480 149 QDFTLCFTDGSKTAN-----NTSCAYI-IDKT-LISSFVLN-NVNSVYTSELIAVLLCLKHLKFLPKEKFVVISDSKSTL 220 (446)
Q Consensus 149 ~~~~~iyTDGS~~~~-----~~G~g~v-~~~~-~~~~~~l~-~~~t~~~AEl~Ai~~AL~~~~~~~~~~i~I~tDS~~ai 220 (446)
.+.++||||||+..+ .+|+||+ ..+. ...+..+. ..+++|.|||.||..||+.|.+....+|+|.|||++++
T Consensus 210 ~~~~vvytDGS~~~ng~~~~~AGyGvywg~~~e~N~s~pv~~g~qtNnrAEl~Av~~ALkka~~~~~~kv~I~TDS~~~i 289 (371)
T KOG3752|consen 210 IEIQVVYTDGSSSGNGRKSSRAGYGVYWGPGHELNVSGPLAGGRQTNNRAELIAAIEALKKARSKNINKVVIRTDSEYFI 289 (371)
T ss_pred ccceEEEecCccccCCCCCCcceeEEeeCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhcCCCcEEEEechHHHH
Confidence 345899999999764 3899954 4332 35566664 78999999999999999999998888999999999999
Q ss_pred HHhcCCCCC-----------Ch------hHHHHHHHHHHHHh--cCceEEEEEcCCCCCCccchHhHHHhcCC
Q psy5480 221 LALSNPSNT-----------NP------IVSLIHSCWTDLLC--YGKQLAFLWCPSHTGIQGNEAVDRAARNP 274 (446)
Q Consensus 221 ~~l~~~~~~-----------~~------~~~~i~~~~~~l~~--~~~~V~~~WVpgH~gi~gNe~AD~lAk~a 274 (446)
+.|+.+... ++ ........+.+|.+ .+.+|.+.||+||.|+.|||.||.||+++
T Consensus 290 ~~l~~wv~~~k~~~~k~~~~~~~i~~~v~n~~~~~e~~~l~q~~~~~~vq~~~V~Gh~gi~gne~Ad~lARkg 362 (371)
T KOG3752|consen 290 NSLTLWVQGWKKNGWKTSNGSDRICAYVKNQDFFNELDELEQEISNKKVQQEYVGGHSGILGNEMADALARKG 362 (371)
T ss_pred HHHHHHHhhhccCccccccCCCccceeeecchHHHHHHHHHhhhccCceEEEEecCcCCcchHHHHHHHHhhh
Confidence 998754321 12 01223333444433 36899999999999999999999999994
No 8
>PRK13907 rnhA ribonuclease H; Provisional
Probab=99.69 E-value=2.2e-16 Score=136.37 Aligned_cols=118 Identities=19% Similarity=0.134 Sum_probs=93.6
Q ss_pred EEEEEcCCcCCC--CceEEEEEcC-Ce--EEEEecCCccchhHHHHHHHHHHHHHhhcCCCCceEEEechHHHHHHhcCC
Q psy5480 152 TLCFTDGSKTAN--NTSCAYIIDK-TL--ISSFVLNNVNSVYTSELIAVLLCLKHLKFLPKEKFVVISDSKSTLLALSNP 226 (446)
Q Consensus 152 ~~iyTDGS~~~~--~~G~g~v~~~-~~--~~~~~l~~~~t~~~AEl~Ai~~AL~~~~~~~~~~i~I~tDS~~ai~~l~~~ 226 (446)
+.||||||+..+ .+|+|+|+.+ .. ..... ....|++.||+.|++.||+.+.+.+..++.|+|||+.+++.+++.
T Consensus 2 ~~iy~DGa~~~~~g~~G~G~vi~~~~~~~~~~~~-~~~~tn~~AE~~All~aL~~a~~~g~~~v~i~sDS~~vi~~~~~~ 80 (128)
T PRK13907 2 IEVYIDGASKGNPGPSGAGVFIKGVQPAVQLSLP-LGTMSNHEAEYHALLAALKYCTEHNYNIVSFRTDSQLVERAVEKE 80 (128)
T ss_pred EEEEEeeCCCCCCCccEEEEEEEECCeeEEEEec-ccccCCcHHHHHHHHHHHHHHHhCCCCEEEEEechHHHHHHHhHH
Confidence 689999998753 5899976633 22 22222 346799999999999999999998888999999999999999987
Q ss_pred CCCChhHHHHHHHHHHHHhcCceEEEEEcCCCCCCccchHhHHHhcCC
Q psy5480 227 SNTNPIVSLIHSCWTDLLCYGKQLAFLWCPSHTGIQGNEAVDRAARNP 274 (446)
Q Consensus 227 ~~~~~~~~~i~~~~~~l~~~~~~V~~~WVpgH~gi~gNe~AD~lAk~a 274 (446)
...+.....+...+..+......+.|.|||+ ++|+.||.||+.+
T Consensus 81 ~~~~~~~~~l~~~~~~l~~~f~~~~~~~v~r----~~N~~Ad~LA~~a 124 (128)
T PRK13907 81 YAKNKMFAPLLEEALQYIKSFDLFFIKWIPS----SQNKVADELARKA 124 (128)
T ss_pred HhcChhHHHHHHHHHHHHhcCCceEEEEcCc----hhchhHHHHHHHH
Confidence 6555445556666666667778888999996 5999999999983
No 9
>PRK07708 hypothetical protein; Validated
Probab=99.57 E-value=3.8e-14 Score=132.77 Aligned_cols=125 Identities=14% Similarity=0.072 Sum_probs=92.3
Q ss_pred cCCCcEEEEEcCCcC--CCCceEEEEEc-C--CeEE----EEecCCccchhHHHHHHHHHHHHHhhcCCCCc--eEEEec
Q psy5480 147 KYQDFTLCFTDGSKT--ANNTSCAYIID-K--TLIS----SFVLNNVNSVYTSELIAVLLCLKHLKFLPKEK--FVVISD 215 (446)
Q Consensus 147 ~~~~~~~iyTDGS~~--~~~~G~g~v~~-~--~~~~----~~~l~~~~t~~~AEl~Ai~~AL~~~~~~~~~~--i~I~tD 215 (446)
..++.+++|+|||.. ++++|+|+|+. . +... ...++...|++.||+.|++.||+.+.+.+.+. |.|++|
T Consensus 69 ~ep~~~~vY~DGs~~~n~g~aG~GvVI~~~~g~~~~~~~~~~~l~~~~TNN~AEy~Ali~aL~~A~e~g~~~~~V~I~~D 148 (219)
T PRK07708 69 EEPHEILVYFDGGFDKETKLAGLGIVIYYKQGNKRYRIRRNAYIEGIYDNNEAEYAALYYAMQELEELGVKHEPVTFRGD 148 (219)
T ss_pred cCCCcEEEEEeeccCCCCCCcEEEEEEEECCCCEEEEEEeeccccccccCcHHHHHHHHHHHHHHHHcCCCcceEEEEec
Confidence 345679999999986 45689996552 2 2221 23455568999999999999999999887654 899999
Q ss_pred hHHHHHHhcCCCCC-ChhHHHHHHHHHHHHh-cCceEEEEEcCCCCCCccchHhHHHhcCCC
Q psy5480 216 SKSTLLALSNPSNT-NPIVSLIHSCWTDLLC-YGKQLAFLWCPSHTGIQGNEAVDRAARNPS 275 (446)
Q Consensus 216 S~~ai~~l~~~~~~-~~~~~~i~~~~~~l~~-~~~~V~~~WVpgH~gi~gNe~AD~lAk~a~ 275 (446)
|+.+++.+.+.+.. ++....+.+.+..+.. -...+.|.||| ...|+.||+||++|.
T Consensus 149 SqlVi~qi~g~wk~~~~~l~~y~~~i~~l~~~~~l~~~~~~Vp----R~~N~~AD~LAk~Al 206 (219)
T PRK07708 149 SQVVLNQLAGEWPCYDEHLNHWLDRIEQKLKQLKLTPVYEPIS----RKQNKEADQLATQAL 206 (219)
T ss_pred cHHHHHHhCCCceeCChhHHHHHHHHHHHHhhCCceEEEEECC----chhhhHHHHHHHHHH
Confidence 99999999987754 3444444444443322 34468889998 578999999999954
No 10
>PRK07238 bifunctional RNase H/acid phosphatase; Provisional
Probab=99.44 E-value=8.6e-13 Score=134.39 Aligned_cols=119 Identities=17% Similarity=0.178 Sum_probs=94.0
Q ss_pred cEEEEEcCCcCCC--CceEEEEE-cC--Ce---EEEEecCCccchhHHHHHHHHHHHHHhhcCCCCceEEEechHHHHHH
Q psy5480 151 FTLCFTDGSKTAN--NTSCAYII-DK--TL---ISSFVLNNVNSVYTSELIAVLLCLKHLKFLPKEKFVVISDSKSTLLA 222 (446)
Q Consensus 151 ~~~iyTDGS~~~~--~~G~g~v~-~~--~~---~~~~~l~~~~t~~~AEl~Ai~~AL~~~~~~~~~~i~I~tDS~~ai~~ 222 (446)
.+.||||||+..+ .+|+|+++ +. +. .....++ ..|++.||+.|++.||+.+.+.+...|.|++||+.+++.
T Consensus 2 ~~~i~~DGa~~~n~g~aG~G~vi~~~~~~~~~~~~~~~~~-~~tnn~AE~~All~gL~~a~~~g~~~v~i~~DS~lvi~~ 80 (372)
T PRK07238 2 KVVVEADGGSRGNPGPAGYGAVVWDADRGEVLAERAEAIG-RATNNVAEYRGLIAGLEAAAELGATEVEVRMDSKLVVEQ 80 (372)
T ss_pred eEEEEecCCCCCCCCceEEEEEEEeCCCCcEEEEeecccC-CCCchHHHHHHHHHHHHHHHhCCCCeEEEEeCcHHHHHH
Confidence 3789999998764 48899665 32 21 1223333 789999999999999999999888999999999999999
Q ss_pred hcCCCC-CChhHHHHHHHHHHHHhcCceEEEEEcCCCCCCccchHhHHHhcCC
Q psy5480 223 LSNPSN-TNPIVSLIHSCWTDLLCYGKQLAFLWCPSHTGIQGNEAVDRAARNP 274 (446)
Q Consensus 223 l~~~~~-~~~~~~~i~~~~~~l~~~~~~V~~~WVpgH~gi~gNe~AD~lAk~a 274 (446)
+.+.+. +++-...+...+..+......+.|.|||. .+|+.||.||+.|
T Consensus 81 i~~~~~~~~~~l~~~~~~i~~l~~~f~~~~i~~v~r----~~N~~AD~LA~~a 129 (372)
T PRK07238 81 MSGRWKVKHPDMKPLAAQARELASQFGRVTYTWIPR----ARNAHADRLANEA 129 (372)
T ss_pred hCCCCccCChHHHHHHHHHHHHHhcCCceEEEECCc----hhhhHHHHHHHHH
Confidence 998764 44445555555666667778999999995 7999999999983
No 11
>PF13456 RVT_3: Reverse transcriptase-like; PDB: 3ALY_A 2EHG_A 3HST_B.
Probab=99.15 E-value=1.9e-10 Score=91.66 Aligned_cols=83 Identities=22% Similarity=0.138 Sum_probs=66.7
Q ss_pred hhHHHHHHHHHHHHHhhcCCCCceEEEechHHHHHHhcCCCCCChhHHHHHHHHHHHHhcCceEEEEEcCCCCCCccchH
Q psy5480 187 VYTSELIAVLLCLKHLKFLPKEKFVVISDSKSTLLALSNPSNTNPIVSLIHSCWTDLLCYGKQLAFLWCPSHTGIQGNEA 266 (446)
Q Consensus 187 ~~~AEl~Ai~~AL~~~~~~~~~~i~I~tDS~~ai~~l~~~~~~~~~~~~i~~~~~~l~~~~~~V~~~WVpgH~gi~gNe~ 266 (446)
+..||+.|+..||+.+.+.+..+|.|.|||+.+++.+++..........+...+..+.+....+.|.||| .++|..
T Consensus 1 ~~~aE~~al~~al~~a~~~g~~~i~v~sDs~~vv~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~----r~~N~~ 76 (87)
T PF13456_consen 1 PLEAEALALLEALQLAWELGIRKIIVESDSQLVVDAINGRSSSRSELRPLIQDIRSLLDRFWNVSVSHIP----REQNKV 76 (87)
T ss_dssp HHHHHHHHHHHHHHHHHCCT-SCEEEEES-HHHHHHHTTSS---SCCHHHHHHHHHHHCCCSCEEEEE------GGGSHH
T ss_pred CcHHHHHHHHHHHHHHHHCCCCEEEEEecCccccccccccccccccccccchhhhhhhccccceEEEEEC----hHHhHH
Confidence 4689999999999999999999999999999999999988654435556666666666778999999999 799999
Q ss_pred hHHHhcC
Q psy5480 267 VDRAARN 273 (446)
Q Consensus 267 AD~lAk~ 273 (446)
||.|||.
T Consensus 77 A~~LA~~ 83 (87)
T PF13456_consen 77 ADALAKF 83 (87)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999997
No 12
>PF13966 zf-RVT: zinc-binding in reverse transcriptase
Probab=95.36 E-value=0.0072 Score=48.11 Aligned_cols=29 Identities=21% Similarity=0.515 Sum_probs=23.8
Q ss_pred ccCCCCCCCcc-CC-CCCccchhhc-cccchH
Q psy5480 384 LFKRAPPSTCR-CG-ETLSVQHILT-CTLHGH 412 (446)
Q Consensus 384 ~~~~~~~~~C~-Cg-~~~t~~Hil~-Cp~~~~ 412 (446)
+.+...++.|. || +.||++|+|+ ||...+
T Consensus 53 ~r~~~~~~~C~~C~~~~Et~~Hlf~~C~~a~~ 84 (86)
T PF13966_consen 53 RRGIQVDPICPLCGNEEETIEHLFFHCPFARE 84 (86)
T ss_pred ccCCccCCccccCCCccccccceeccCcCccc
Confidence 34556789999 99 6999999999 997643
No 13
>PF05380 Peptidase_A17: Pao retrotransposon peptidase ; InterPro: IPR008042 This signature identifies members of the Pao retrotransposon family.
Probab=68.72 E-value=15 Score=32.54 Aligned_cols=53 Identities=17% Similarity=0.168 Sum_probs=31.6
Q ss_pred CcEEEEEcCCcCCCCceEE-EEEc-C--CeEE----E-Eec--CCccchhHHHHHHHHHHHHHhhc
Q psy5480 150 DFTLCFTDGSKTANNTSCA-YIID-K--TLIS----S-FVL--NNVNSVYTSELIAVLLCLKHLKF 204 (446)
Q Consensus 150 ~~~~iyTDGS~~~~~~G~g-~v~~-~--~~~~----~-~~l--~~~~t~~~AEl~Ai~~AL~~~~~ 204 (446)
..+++|+|+|.. +.|+. |+.. . +... + .++ -...|+=+-||.|+..|.+.+..
T Consensus 80 ~~L~~F~DAS~~--aygavvYlr~~~~~~~~~~ll~aKsrv~P~k~~tIPRlEL~a~~l~~~l~~~ 143 (159)
T PF05380_consen 80 VELHVFCDASES--AYGAVVYLRSYSDGSVQVRLLFAKSRVAPLKTVTIPRLELLAALLGVRLANT 143 (159)
T ss_pred eeeeEeeccccc--ceeeEeEeeeccCCceeeeeeeecccccCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 468999999943 33333 2211 1 1110 0 111 12459999999999999987743
No 14
>PF00336 DNA_pol_viral_C: DNA polymerase (viral) C-terminal domain; InterPro: IPR001462 This domain is at the C terminus of hepatitis B-type viruses P proteins and represents a functional domain that controls the RNase H activities of the protein. The domain is always associated with IPR000201 from INTERPRO and .; GO: 0004523 ribonuclease H activity
Probab=53.92 E-value=16 Score=33.81 Aligned_cols=90 Identities=17% Similarity=0.164 Sum_probs=50.8
Q ss_pred CCcEEEEEcCCcCCCCceEEEEEcCCeEEEEecCCccchhHHHHHHHHHHHHHhhcCCCCceEEEechHHHHHHhcCCCC
Q psy5480 149 QDFTLCFTDGSKTANNTSCAYIIDKTLISSFVLNNVNSVYTSELIAVLLCLKHLKFLPKEKFVVISDSKSTLLALSNPSN 228 (446)
Q Consensus 149 ~~~~~iyTDGS~~~~~~G~g~v~~~~~~~~~~l~~~~t~~~AEl~Ai~~AL~~~~~~~~~~i~I~tDS~~ai~~l~~~~~ 228 (446)
..--.||+|+.- +|+|+.+.++. ..+.....-.+..+||.|...|.-+. ..++ |.|||..|+. +...
T Consensus 92 ~~lc~VfaDATp----Tgwgi~i~~~~-~~~Tfs~~l~IhtaELlaaClAr~~~----~~r~-l~tDnt~Vls---rkyt 158 (245)
T PF00336_consen 92 PGLCQVFADATP----TGWGISITGQR-MRGTFSKPLPIHTAELLAACLARLMS----GARC-LGTDNTVVLS---RKYT 158 (245)
T ss_pred CCCCceeccCCC----CcceeeecCce-eeeeecccccchHHHHHHHHHHHhcc----CCcE-EeecCcEEEe---cccc
Confidence 345588999864 34443332221 12222335678999999998887665 2333 9999987653 2232
Q ss_pred CChh-HHHHHHHHHHHHhcCceEEEEEcCC
Q psy5480 229 TNPI-VSLIHSCWTDLLCYGKQLAFLWCPS 257 (446)
Q Consensus 229 ~~~~-~~~i~~~~~~l~~~~~~V~~~WVpg 257 (446)
.-+. +.-.-+.+ -..+.|..||+
T Consensus 159 s~PW~lac~A~wi------Lrgts~~yVPS 182 (245)
T PF00336_consen 159 SFPWLLACAANWI------LRGTSFYYVPS 182 (245)
T ss_pred cCcHHHHHHHHHh------hcCceEEEecc
Confidence 2232 22222222 23577888996
No 15
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=49.34 E-value=22 Score=38.81 Aligned_cols=35 Identities=17% Similarity=0.167 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHhcCceEEEEEcCCCCCCccchHh
Q psy5480 233 VSLIHSCWTDLLCYGKQLAFLWCPSHTGIQGNEAV 267 (446)
Q Consensus 233 ~~~i~~~~~~l~~~~~~V~~~WVpgH~gi~gNe~A 267 (446)
-..+.++++.+.+.|..|.+-|||+|.+..||-.+
T Consensus 213 Pedfk~fVD~aH~~GIgViLD~V~~HF~~d~~~L~ 247 (628)
T COG0296 213 PEDFKALVDAAHQAGIGVILDWVPNHFPPDGNYLA 247 (628)
T ss_pred HHHHHHHHHHHHHcCCEEEEEecCCcCCCCcchhh
Confidence 46777778888899999999999999999988755
No 16
>PF05741 zf-nanos: Nanos RNA binding domain; InterPro: IPR024161 Nanos is a highly conserved RNA-binding protein in higher eukaryotes and functions as a key regulatory protein in translational control using a 3' untranslated region during the development and maintenance of germ cells. Nanos comprises a non-conserved amino-terminus and highly conserved carboxy- terminal regions. The C-terminal region has two conserved Cys-Cys-His-Cys (CCHC)-type zinc-finger motifs that are indispensable for nanos function [, , ]. The structure of the nanos-type zinc finger is composed of two independent zinc-finger (ZF) lobes, the N-terminal ZF1 and the C-terminal ZF2, which are connected by a linker helix []. These lobes create a large cleft. Zinc ions in ZF1 and ZF2 are bound to the CCHC motif by tetrahedral coordination.; PDB: 3ALR_B.
Probab=39.01 E-value=14 Score=26.77 Aligned_cols=19 Identities=32% Similarity=0.716 Sum_probs=8.0
Q ss_pred CCcc-CCCCCccchhhc-ccc
Q psy5480 391 STCR-CGETLSVQHILT-CTL 409 (446)
Q Consensus 391 ~~C~-Cg~~~t~~Hil~-Cp~ 409 (446)
-.|+ ||+..+-.|... ||+
T Consensus 34 y~Cp~CgAtGd~AHT~~yCP~ 54 (55)
T PF05741_consen 34 YVCPICGATGDNAHTIKYCPK 54 (55)
T ss_dssp ---TTT---GGG---GGG-TT
T ss_pred CcCCCCcCcCccccccccCcC
Confidence 3899 999998999999 996
No 17
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=36.90 E-value=77 Score=34.20 Aligned_cols=72 Identities=14% Similarity=0.066 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHhhcCCCCceEEEe-------chHHHHHHhcCCCCCChhHHHHHHHHHHHHhcCceEEEEEcCCCCCC
Q psy5480 190 SELIAVLLCLKHLKFLPKEKFVVIS-------DSKSTLLALSNPSNTNPIVSLIHSCWTDLLCYGKQLAFLWCPSHTGI 261 (446)
Q Consensus 190 AEl~Ai~~AL~~~~~~~~~~i~I~t-------DS~~ai~~l~~~~~~~~~~~~i~~~~~~l~~~~~~V~~~WVpgH~gi 261 (446)
+.+.||...|..+.+.+...|.|-. |+-+.+.-.....+.-+-...+.+++..+..+|.+|.+-.|+.|++.
T Consensus 30 Gdl~gi~~~ldyl~~lGv~~i~l~P~~~~~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~V~NH~s~ 108 (551)
T PRK10933 30 GDLRGVTQRLDYLQKLGVDAIWLTPFYVSPQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDMVFNHTST 108 (551)
T ss_pred cCHHHHHHhhHHHHhCCCCEEEECCCCCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCccC
Confidence 4688999999999888776665522 21111111111111112356788888888899999999999999876
No 18
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=34.56 E-value=12 Score=23.49 Aligned_cols=19 Identities=32% Similarity=0.599 Sum_probs=8.0
Q ss_pred CCcc-CC-CCCccchhhc-ccc
Q psy5480 391 STCR-CG-ETLSVQHILT-CTL 409 (446)
Q Consensus 391 ~~C~-Cg-~~~t~~Hil~-Cp~ 409 (446)
|.|+ || +..=.+..++ ||-
T Consensus 3 p~Cp~C~se~~y~D~~~~vCp~ 24 (30)
T PF08274_consen 3 PKCPLCGSEYTYEDGELLVCPE 24 (30)
T ss_dssp ---TTT-----EE-SSSEEETT
T ss_pred CCCCCCCCcceeccCCEEeCCc
Confidence 6899 99 4445667777 874
No 19
>COG4047 Uncharacterized protein conserved in archaea [Function unknown]
Probab=28.83 E-value=47 Score=30.83 Aligned_cols=41 Identities=27% Similarity=0.396 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhccCCCCchHHHHHHhCCCCHHHHHHHHH--------HHHHHHHh
Q psy5480 8 PVHNSGIRIATGALRSSPIPSLLVESGVPPLQLRRSQLA--------MSYAVKIA 54 (446)
Q Consensus 8 ~iq~~a~R~i~GafrtTp~~aL~~eagl~Pl~~~l~~~~--------~~~~~Rl~ 54 (446)
++.+.|+|.++|.||--|.+. -.|.+.|...++ .++|-+++
T Consensus 150 KmfgYA~r~~~g~f~pyp~eI------PIPvD~Ri~rlT~~~tne~Pq~~W~~iA 198 (243)
T COG4047 150 KMFGYAARIVLGRFRPYPFEI------PIPVDVRIARLTRKLTNEAPQKFWDKIA 198 (243)
T ss_pred hHhHHHHHHHhcCCCCCCcCC------CCcchHHHHHHHHHHhhhhHHHHHHHHH
Confidence 467889999999999877542 124555544443 45677774
No 20
>smart00642 Aamy Alpha-amylase domain.
Probab=26.74 E-value=1.7e+02 Score=26.06 Aligned_cols=30 Identities=10% Similarity=-0.042 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHhcCceEEEEEcCCCCCC
Q psy5480 232 IVSLIHSCWTDLLCYGKQLAFLWCPSHTGI 261 (446)
Q Consensus 232 ~~~~i~~~~~~l~~~~~~V~~~WVpgH~gi 261 (446)
-..++.++++++++++.+|.+-.|+.|++.
T Consensus 68 t~~d~~~lv~~~h~~Gi~vilD~V~NH~~~ 97 (166)
T smart00642 68 TMEDFKELVDAAHARGIKVILDVVINHTSD 97 (166)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECCCCCCC
Confidence 357788888888899999999999999887
No 21
>COG3341 Predicted double-stranded RNA/RNA-DNA hybrid binding protein [General function prediction only]
Probab=25.62 E-value=49 Score=30.94 Aligned_cols=86 Identities=16% Similarity=0.076 Sum_probs=57.5
Q ss_pred ccchhHHHHHHHHHHHHHhhcCCCCceEE-E----echHHHHHHhcCCCCC-ChhHHHHHHHHHHHHh--cCceEEEEEc
Q psy5480 184 VNSVYTSELIAVLLCLKHLKFLPKEKFVV-I----SDSKSTLLALSNPSNT-NPIVSLIHSCWTDLLC--YGKQLAFLWC 255 (446)
Q Consensus 184 ~~t~~~AEl~Ai~~AL~~~~~~~~~~i~I-~----tDS~~ai~~l~~~~~~-~~~~~~i~~~~~~l~~--~~~~V~~~WV 255 (446)
..++..+|.+|++.+|+.+......+.+| + .||++.+.-+.+-... ...... .+... .+....+.|+
T Consensus 105 ~~~n~s~d~la~ly~~~~~~~~~nrk~~i~y~~~~~ds~a~~k~~k~~~~~k~~~~~~-----~e~~~~~~~v~h~~k~i 179 (225)
T COG3341 105 IKSNDSGDVLAKLYGLRYEVPLDNRKSVINYLTPGNDSWAYFKYVKDKCETKVNLLKD-----REFFSIGKGVFHDEKDI 179 (225)
T ss_pred cccCchHHHHHHhccccccccccCccceeeccCCcchhHHHHHHHhhhhhhHHHHHHh-----HHhhhccchhhhhhhhc
Confidence 45678899999999999888766555555 6 7999988776544311 111000 01111 2345667888
Q ss_pred CCCCCCccchHhHHHhcCC
Q psy5480 256 PSHTGIQGNEAVDRAARNP 274 (446)
Q Consensus 256 pgH~gi~gNe~AD~lAk~a 274 (446)
--|.++.-+..++.++...
T Consensus 180 ~~~~~~~~~~~~~s~~~~~ 198 (225)
T COG3341 180 NIHIWIFESKKGNSHVYNT 198 (225)
T ss_pred ccccccchhhhhhhhhhch
Confidence 9999998888888888773
No 22
>KOG1812|consensus
Probab=20.83 E-value=2e+02 Score=29.62 Aligned_cols=42 Identities=17% Similarity=0.131 Sum_probs=34.9
Q ss_pred ccchhHHHHHHHHHHHHHhhcCCCCceEEEechHHHHHHhcC
Q psy5480 184 VNSVYTSELIAVLLCLKHLKFLPKEKFVVISDSKSTLLALSN 225 (446)
Q Consensus 184 ~~t~~~AEl~Ai~~AL~~~~~~~~~~i~I~tDS~~ai~~l~~ 225 (446)
..+...||++|+..+|..+.+.+...+.+++|+.-....+..
T Consensus 46 ~~~~~~ae~~al~~~l~ea~~~~~~~~~~~~d~~~~~~~v~~ 87 (384)
T KOG1812|consen 46 SITPLEAELMALKRGLTEALELGLNHIVIYCDDELIYESVAG 87 (384)
T ss_pred ccchhhHHHHHHhhccHHHHhhccccceEecccHHHHHHHhh
Confidence 367899999999999999999999999999996655554433
No 23
>PRK10860 tRNA-specific adenosine deaminase; Provisional
Probab=20.78 E-value=3.2e+02 Score=24.58 Aligned_cols=29 Identities=10% Similarity=-0.086 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHHHHhhcCCCCceEEEec
Q psy5480 187 VYTSELIAVLLCLKHLKFLPKEKFVVISD 215 (446)
Q Consensus 187 ~~~AEl~Ai~~AL~~~~~~~~~~i~I~tD 215 (446)
...||+.||..|.+..........++|+-
T Consensus 60 ~~HAEi~Ai~~a~~~~~~~~l~g~tlY~T 88 (172)
T PRK10860 60 TAHAEIMALRQGGLVLQNYRLLDATLYVT 88 (172)
T ss_pred ccCHHHHHHHHHHHhcCCCCcCCcEEEee
Confidence 45799999999877554333344555543
Done!