Query psy5480
Match_columns 446
No_of_seqs 275 out of 1710
Neff 7.9
Searched_HMMs 29240
Date Fri Aug 16 18:37:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5480.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5480hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qio_A GAG-POL polyprotein; RN 99.9 7.2E-23 2.5E-27 180.4 12.4 125 146-275 7-145 (150)
2 2qkb_A Ribonuclease H1, HS-RNA 99.9 5.2E-23 1.8E-27 182.3 10.3 127 147-274 3-148 (154)
3 2kq2_A Ribonuclease H-related 99.9 1.7E-23 5.7E-28 184.0 5.1 124 148-275 3-135 (147)
4 3h08_A RNH (ribonuclease H); R 99.9 7.7E-23 2.6E-27 179.5 8.5 121 150-274 3-141 (146)
5 3p1g_A Xenotropic murine leuke 99.9 2.7E-21 9.3E-26 172.7 11.7 120 151-274 23-153 (165)
6 2e4l_A Ribonuclease HI, RNAse 99.8 2E-21 7E-26 172.7 10.2 122 150-275 5-143 (158)
7 1jl1_A Ribonuclease HI; RNAse 99.8 2E-21 6.9E-26 172.3 9.7 120 151-274 4-140 (155)
8 1ril_A Ribonuclease H; hydrola 99.8 1.7E-21 5.9E-26 174.6 6.6 122 150-275 7-146 (166)
9 2lsn_A Reverse transcriptase; 99.8 7E-20 2.4E-24 163.4 9.9 125 149-274 5-160 (165)
10 3hst_B Protein RV2228C/MT2287; 99.8 7.8E-19 2.7E-23 152.5 12.1 119 151-274 3-130 (141)
11 3u3g_D Ribonuclease H, RNAse H 99.8 1E-18 3.5E-23 151.4 11.7 119 151-274 3-134 (140)
12 1mu2_A HIV-2 RT; HIV-2 reverse 99.8 2E-18 6.9E-23 183.0 14.0 118 148-274 433-554 (555)
13 2zd1_A Reverse transcriptase/r 99.8 1.1E-18 3.6E-23 185.2 11.8 117 148-273 436-556 (557)
14 2ehg_A Ribonuclease HI; RNAse 99.7 1.1E-17 3.9E-22 146.9 11.6 118 152-274 2-131 (149)
15 1zbf_A Ribonuclease H-related 99.4 2.8E-13 9.7E-18 117.5 4.3 120 147-268 7-138 (142)
16 4htu_A Ribonuclease H, RNAse H 99.2 8.3E-11 2.8E-15 100.2 8.6 77 149-227 3-84 (134)
17 1rw3_A POL polyprotein; RNA an 64.4 1.5 5.1E-05 44.4 0.2 74 149-226 344-428 (455)
18 2zd1_B P51 RT; P51/P66, hetero 56.8 14 0.0005 36.8 6.0 69 149-220 322-400 (428)
19 3alr_A Nanos protein; zinc-fin 40.7 11 0.00036 29.8 1.5 27 391-417 72-100 (106)
20 1ea9_C Cyclomaltodextrinase; h 28.9 40 0.0014 35.0 4.1 77 190-271 169-256 (583)
21 1j0h_A Neopullulanase; beta-al 22.7 41 0.0014 34.9 2.8 76 190-270 173-259 (588)
22 1wzl_A Alpha-amylase II; pullu 22.4 42 0.0014 34.8 2.7 77 190-271 170-257 (585)
23 2akl_A PHNA-like protein PA012 20.9 36 0.0012 28.0 1.4 27 388-414 25-54 (138)
24 1ht6_A AMY1, alpha-amylase iso 20.8 52 0.0018 32.2 3.0 73 191-263 19-98 (405)
25 2fr5_A Cytidine deaminase; tet 20.6 1.8E+02 0.0061 24.2 5.9 54 163-217 36-92 (146)
No 1
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Probab=99.89 E-value=7.2e-23 Score=180.37 Aligned_cols=125 Identities=19% Similarity=0.282 Sum_probs=93.3
Q ss_pred hcCCCcEEEEEcCCcCCC--CceEEEEEcCCeEEEEecCCccchhHHHHHHHHHHHHHhhcCCCCceEEEechHHHHHHh
Q psy5480 146 SKYQDFTLCFTDGSKTAN--NTSCAYIIDKTLISSFVLNNVNSVYTSELIAVLLCLKHLKFLPKEKFVVISDSKSTLLAL 223 (446)
Q Consensus 146 ~~~~~~~~iyTDGS~~~~--~~G~g~v~~~~~~~~~~l~~~~t~~~AEl~Ai~~AL~~~~~~~~~~i~I~tDS~~ai~~l 223 (446)
.+..+.+.||||||+..+ ..|+|+++..+......+ ..+|++.||+.|++.||+.+ ..+|.|+|||+++++.|
T Consensus 7 ~P~~~~~~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~-~~~Tnn~aEl~A~i~AL~~~----~~~v~i~tDS~~v~~~i 81 (150)
T 3qio_A 7 EPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVTL-TDTTNQKTELQAIYLALQDS----GLEVNIVTDSQYALGII 81 (150)
T ss_dssp SCCTTCEEEEEEEEECTTTCCEEEEEEETTSCEEEEEE-SSCCHHHHHHHHHHHHHHHS----CSEEEEEESCHHHHHHH
T ss_pred CCCCCCEEEEEccCCCCCCCCeEEEEEEEcCCEEEEeC-CCCCHHHHHHHHHHHHHHhC----CCcEEEEeCcHHHHHHH
Confidence 456678999999998754 378887765443333344 47899999999999999985 47899999999999999
Q ss_pred cCCC-----------CCCh-hHHHHHHHHHHHHhcCceEEEEEcCCCCCCccchHhHHHhcCCC
Q psy5480 224 SNPS-----------NTNP-IVSLIHSCWTDLLCYGKQLAFLWCPSHTGIQGNEAVDRAARNPS 275 (446)
Q Consensus 224 ~~~~-----------~~~~-~~~~i~~~~~~l~~~~~~V~~~WVpgH~gi~gNe~AD~lAk~a~ 275 (446)
..+. ...+ ...++...+..+......|.|.|||||+|++|||.||+|||+|+
T Consensus 82 ~~w~~~W~~~gw~~~~g~~v~n~~l~~~l~~~l~~~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~ 145 (150)
T 3qio_A 82 TQWIHNWKKRGWKTADKKPVKNVDLVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGI 145 (150)
T ss_dssp HHHHHHHCC------------CHHHHHHHHHHHTTCSEEEEEECCTTSCCHHHHHHHHHHHTTT
T ss_pred HHHHHHHhhcCcCcCcCcccccHHHHHHHHHHHhhcCceEEEEccCcCCChhHHHHHHHHHHHH
Confidence 7641 1111 12233333333235678999999999999999999999999953
No 2
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*
Probab=99.88 E-value=5.2e-23 Score=182.30 Aligned_cols=127 Identities=23% Similarity=0.295 Sum_probs=97.0
Q ss_pred cCCCcEEEEEcCCcCCCC-----ceEEEEEcCC--eEEEEecCCccchhHHHHHHHHHHHHHhhcCCCCceEEEechHHH
Q psy5480 147 KYQDFTLCFTDGSKTANN-----TSCAYIIDKT--LISSFVLNNVNSVYTSELIAVLLCLKHLKFLPKEKFVVISDSKST 219 (446)
Q Consensus 147 ~~~~~~~iyTDGS~~~~~-----~G~g~v~~~~--~~~~~~l~~~~t~~~AEl~Ai~~AL~~~~~~~~~~i~I~tDS~~a 219 (446)
.+.+.++||||||+..++ +|+|+++..+ ...+..+...+|++.||+.|++.||+.+.+.+..+|.|+|||+++
T Consensus 3 ~~~~~~~iytDGs~~~n~~~~~~aG~Gvv~~~~~~~~~~~~l~~~~tn~~aEl~A~~~aL~~~~~~~~~~v~i~tDS~~v 82 (154)
T 2qkb_A 3 HMGDFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVLYTNSMFT 82 (154)
T ss_dssp EETTEEEEEEEEEEETTTSSSCEEEEEEECSTTCTTCEEEECCSSCCHHHHHHHHHHHHHHHHHHTTCCEEEEEESCHHH
T ss_pred CCCCeEEEEEccCcCCCCCCCCcEEEEEEEECCCceeEEeecCCCCchHHHHHHHHHHHHHHHHhCCCceEEEEECcHHH
Confidence 345789999999987543 6888765432 234455655789999999999999999988778899999999999
Q ss_pred HHHhcCCC---------CCC--h-hHHHHHHHHHHHHhcCceEEEEEcCCCCCCccchHhHHHhcCC
Q psy5480 220 LLALSNPS---------NTN--P-IVSLIHSCWTDLLCYGKQLAFLWCPSHTGIQGNEAVDRAARNP 274 (446)
Q Consensus 220 i~~l~~~~---------~~~--~-~~~~i~~~~~~l~~~~~~V~~~WVpgH~gi~gNe~AD~lAk~a 274 (446)
++.|.++. ... + ....+...+..+.. +..|.|.|||||+|++|||.||+|||+|
T Consensus 83 i~~i~~~~~~w~~~~w~~~~~~~~~n~~l~~~i~~l~~-~~~v~~~~V~~H~g~~~N~~AD~LA~~a 148 (154)
T 2qkb_A 83 INGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQ-GMDIQWMHVPGHSGFIGNEEADRLAREG 148 (154)
T ss_dssp HHHHHTHHHHHHTTTSBCTTSSBCTTHHHHHHHHHHHT-TCEEEEEECCTTSSCHHHHHHHHHHHHH
T ss_pred HhhhhhhHHHHHhccccccCCCccccHHHHHHHHHHHc-CCceEEEEccCCCCCHhHHHHHHHHHHH
Confidence 99998731 111 1 22344444444433 4579999999999999999999999994
No 3
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A
Probab=99.88 E-value=1.7e-23 Score=184.02 Aligned_cols=124 Identities=17% Similarity=0.128 Sum_probs=96.6
Q ss_pred CCCcEEEEEcCCcCCCCceEEEEE-cCCeE--EEE-ec--CC--ccchhHHHHHHHHHHHHHhhcCCCCceEEEechHHH
Q psy5480 148 YQDFTLCFTDGSKTANNTSCAYII-DKTLI--SSF-VL--NN--VNSVYTSELIAVLLCLKHLKFLPKEKFVVISDSKST 219 (446)
Q Consensus 148 ~~~~~~iyTDGS~~~~~~G~g~v~-~~~~~--~~~-~l--~~--~~t~~~AEl~Ai~~AL~~~~~~~~~~i~I~tDS~~a 219 (446)
+++.+.||||||+..+.+|+|+++ +++.. .+. .. +. ..||+.||+.|++.||+.+.+.+. +|.|+|||+.+
T Consensus 3 ~~~~i~iytDGs~~~g~~G~G~vi~~~g~~~~~~~~~~~~~~~~~~tNn~aEl~A~~~AL~~a~~~~~-~v~I~tDS~~i 81 (147)
T 2kq2_A 3 DRTEYDVYTDGSYVNGQYAWAYAFVKDGKVHYEDADVGKNPAAATMRNVAGEIAAALYAVKKASQLGV-KIRILHDYAGI 81 (147)
T ss_dssp TTSCCEEECCCCCBTTBCEEEEEEEETTEEEEEEEEECCCGGGGGTCTTHHHHHHHHHHHHHHHHHTC-CCCBSSCCSTH
T ss_pred CCCeEEEEECCCCCCCCcEEEEEEEECCEEEEEEeccccccccccccHHHHHHHHHHHHHHHHHHCCC-eEEEEECcHHH
Confidence 457799999999998779999655 44332 222 22 22 369999999999999998877666 99999999998
Q ss_pred HHHhcCCCCCC-hhHHHHHHHHHHHHhcCceEEEEEcCCCCCCccchHhHHHhcCCC
Q psy5480 220 LLALSNPSNTN-PIVSLIHSCWTDLLCYGKQLAFLWCPSHTGIQGNEAVDRAARNPS 275 (446)
Q Consensus 220 i~~l~~~~~~~-~~~~~i~~~~~~l~~~~~~V~~~WVpgH~gi~gNe~AD~lAk~a~ 275 (446)
...+.+.+..+ +....+.++++++.. .|.|.|||||+|++|||.||+|||+|+
T Consensus 82 ~~w~~~~w~~~~~~~~~~~~l~~~l~~---~v~~~wV~gH~g~~~Ne~AD~LA~~a~ 135 (147)
T 2kq2_A 82 AFWATGEWKAKNEFTQAYAKLMNQYRG---IYSFEKVKAHSGNEFNDYVDMKAKSAL 135 (147)
T ss_dssp HHHTTSSSSCCHHHHHHHHCGGGGGST---TCCBCCCCCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCccCCcchHHHHHHHHHhcC---CeeEEEecCcCCCcchHHHHHHHHHHH
Confidence 88887765544 345556666665533 899999999999999999999999953
No 4
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}
Probab=99.87 E-value=7.7e-23 Score=179.55 Aligned_cols=121 Identities=19% Similarity=0.108 Sum_probs=88.1
Q ss_pred CcEEEEEcCCcCCCC--ceEEEEE-cCCe--EEEEecCCccchhHHHHHHHHHHHHHhhcCCCCceEEEechHHHHHHhc
Q psy5480 150 DFTLCFTDGSKTANN--TSCAYII-DKTL--ISSFVLNNVNSVYTSELIAVLLCLKHLKFLPKEKFVVISDSKSTLLALS 224 (446)
Q Consensus 150 ~~~~iyTDGS~~~~~--~G~g~v~-~~~~--~~~~~l~~~~t~~~AEl~Ai~~AL~~~~~~~~~~i~I~tDS~~ai~~l~ 224 (446)
+.++||||||+..++ +|+|+++ .++. ..+..+ ..+|++.||+.|++.||+.+.+ ..+|.|+|||+++++.|.
T Consensus 3 ~~i~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~~~~-~~~Tnn~aEl~A~~~AL~~~~~--~~~v~I~tDS~~vi~~i~ 79 (146)
T 3h08_A 3 KTITIYTDGAASGNPGKGGWGALLMYGSSRKEISGYD-PATTNNRMELMAAIKGLEALKE--PARVQLYSDSAYLVNAMN 79 (146)
T ss_dssp CEEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCSS--CCEEEEEESCHHHHHHHH
T ss_pred ceEEEEEecCCCCCCCceEEEEEEEECCeeEEeecCC-CCCcHHHHHHHHHHHHHHhcCc--cCcEEEEeChHHHHHHHH
Confidence 468999999988653 7888654 4332 222233 4689999999999999999876 579999999999999998
Q ss_pred CCC------------CCCh-hHHHHHHHHHHHHhcCceEEEEEcCCCCCCccchHhHHHhcCC
Q psy5480 225 NPS------------NTNP-IVSLIHSCWTDLLCYGKQLAFLWCPSHTGIQGNEAVDRAARNP 274 (446)
Q Consensus 225 ~~~------------~~~~-~~~~i~~~~~~l~~~~~~V~~~WVpgH~gi~gNe~AD~lAk~a 274 (446)
..+ ...+ ....+...+..+.. ...|.|.|||||+|++|||.||+|||+|
T Consensus 80 ~~w~~~W~~~~w~~~~~~~v~n~~l~~~~~~~~~-~~~v~~~~V~gH~g~~~N~~AD~LA~~a 141 (146)
T 3h08_A 80 EGWLKRWVKNGWKTAAKKPVENIDLWQEILKLTT-LHRVTFHKVKGHSDNPYNSRADELARLA 141 (146)
T ss_dssp SSHHHHHHHTTCC----CCCTTHHHHHHHHHHHH-HSEEEEEECCC-CCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCccCCCCCcCCHHHHHHHHHHHh-hCceEEEEcCCcCCcHhHHHHHHHHHHH
Confidence 721 1111 12333333333323 2479999999999999999999999984
No 5
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=99.85 E-value=2.7e-21 Score=172.70 Aligned_cols=120 Identities=28% Similarity=0.310 Sum_probs=89.2
Q ss_pred cEEEEEcCCcC--CCCceEEEEE-cCCe-EEEEecCCccchhHHHHHHHHHHHHHhhcCCCCceEEEechHHHHHHhcCC
Q psy5480 151 FTLCFTDGSKT--ANNTSCAYII-DKTL-ISSFVLNNVNSVYTSELIAVLLCLKHLKFLPKEKFVVISDSKSTLLALSNP 226 (446)
Q Consensus 151 ~~~iyTDGS~~--~~~~G~g~v~-~~~~-~~~~~l~~~~t~~~AEl~Ai~~AL~~~~~~~~~~i~I~tDS~~ai~~l~~~ 226 (446)
.+.||||||+. ++.+|+|+++ .++. .....+...+||+.||+.|++.||+.+ ...+|.|+|||+++++.+-..
T Consensus 23 ~i~iytDGs~~~npG~~g~G~vi~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~---~~~~v~I~tDS~~vi~~iw~~ 99 (165)
T 3p1g_A 23 DYTWYTDGSSFLQEGQRRAGAAVTTETEVIWARALPAGTSAQRAELIALTQALKMA---EGKKLNVYTDSRYAFATAHVH 99 (165)
T ss_dssp SEEEEEEEEEEEETTEEEEEEEEECSSCEEEEEEECTTCCHHHHHHHHHHHHHHHT---BTSEEEEEECCHHHHHHHHSC
T ss_pred CEEEEEEcccCCCCCceEEEEEEEECCEEEEEecCCCCCcHHHHHHHHHHHHHHHc---cCceEEEEEchHHHHhhhhcc
Confidence 58999999997 3447888654 3332 222245568899999999999999998 368999999999999998322
Q ss_pred CCCChh-HHH-HHHHHHHHHhcCceEEEEEcCCCCC-----CccchHhHHHhcCC
Q psy5480 227 SNTNPI-VSL-IHSCWTDLLCYGKQLAFLWCPSHTG-----IQGNEAVDRAARNP 274 (446)
Q Consensus 227 ~~~~~~-~~~-i~~~~~~l~~~~~~V~~~WVpgH~g-----i~gNe~AD~lAk~a 274 (446)
....++ ..+ +.+++..+ ..+..|.|.|||||+| ++|||.||+|||+|
T Consensus 100 ~~g~~v~n~dl~~~l~~~l-~~~~~v~~~wVkgH~g~~~~~~~gNe~AD~LA~~a 153 (165)
T 3p1g_A 100 SEGREIKNKNEILALLKAL-FLPKRLSIIHCPGHQKGNSAEARGNRMADQAAREA 153 (165)
T ss_dssp CCSCCCSSHHHHHHHHHHT-TSBSEEEEEECCSSCCSCSHHHHHHHHHHHHHHHH
T ss_pred cCCCcccCHHHHHHHHHHH-hcCCceEEEEecCCCCCCcCcchHHHHHHHHHHHH
Confidence 222222 223 22232333 3678999999999999 99999999999994
No 6
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A
Probab=99.85 E-value=2e-21 Score=172.74 Aligned_cols=122 Identities=24% Similarity=0.236 Sum_probs=90.3
Q ss_pred CcEEEEEcCCcCCC--CceEEEEE-cCCe--EEEEecCCccchhHHHHHHHHHHHHHhhcCCCCceEEEechHHHHHHhc
Q psy5480 150 DFTLCFTDGSKTAN--NTSCAYII-DKTL--ISSFVLNNVNSVYTSELIAVLLCLKHLKFLPKEKFVVISDSKSTLLALS 224 (446)
Q Consensus 150 ~~~~iyTDGS~~~~--~~G~g~v~-~~~~--~~~~~l~~~~t~~~AEl~Ai~~AL~~~~~~~~~~i~I~tDS~~ai~~l~ 224 (446)
..+.||||||+..+ .+|+|+|+ +++. ..+..+ ..+|++.||+.|++.||+.+.+ ..+|.|+|||+++++.|.
T Consensus 5 ~~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~AL~~~~~--~~~v~I~tDS~~vi~~i~ 81 (158)
T 2e4l_A 5 KLIHIFTDGSCLGNPGPGGYGIVMNYKGHTKEMSDGF-SLTTNNRMELLAPIVALEALKE--PCKIILTSDSQYMRQGIM 81 (158)
T ss_dssp CEEEEEEEEEESSSSEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCSS--CCEEEEEECCHHHHHHHH
T ss_pred CeEEEEEcccccCCCCcEEEEEEEEECCEEEEEecCc-CCCccHHHHHHHHHHHHHHhcc--CCeEEEEeCHHHHHHHHH
Confidence 46899999999754 37888655 3332 222233 3679999999999999999865 389999999999999998
Q ss_pred C--------CCCC---Ch-hHHHHHHHHHHHHhcCceEEEEEcCCCCCCccchHhHHHhcCCC
Q psy5480 225 N--------PSNT---NP-IVSLIHSCWTDLLCYGKQLAFLWCPSHTGIQGNEAVDRAARNPS 275 (446)
Q Consensus 225 ~--------~~~~---~~-~~~~i~~~~~~l~~~~~~V~~~WVpgH~gi~gNe~AD~lAk~a~ 275 (446)
. .+.. .+ ....+...+..+.. ...|.|.|||||+|++|||.||+|||+|+
T Consensus 82 ~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~-~~~v~~~wV~gH~g~~~Ne~AD~LAk~a~ 143 (158)
T 2e4l_A 82 TWIHGWKKKGWMTSNRTPVKNVDLWKRLDKAAQ-LHQIDWRWVKGHAGHAENERCDQLARAAA 143 (158)
T ss_dssp THHHHHHHTTTBCTTSSBCTTHHHHHHHHHHHT-TSEEEEEECCTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccccccCCCcccCHHHHHHHHHHHc-cCcEEEEEccCCCCchhHHHHHHHHHHHH
Confidence 7 2211 11 12334444444433 46899999999999999999999999943
No 7
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...
Probab=99.85 E-value=2e-21 Score=172.25 Aligned_cols=120 Identities=22% Similarity=0.243 Sum_probs=90.1
Q ss_pred cEEEEEcCCcCCC--CceEEEEE-cCCe--EEEEecCCccchhHHHHHHHHHHHHHhhcCCCCceEEEechHHHHHHhcC
Q psy5480 151 FTLCFTDGSKTAN--NTSCAYII-DKTL--ISSFVLNNVNSVYTSELIAVLLCLKHLKFLPKEKFVVISDSKSTLLALSN 225 (446)
Q Consensus 151 ~~~iyTDGS~~~~--~~G~g~v~-~~~~--~~~~~l~~~~t~~~AEl~Ai~~AL~~~~~~~~~~i~I~tDS~~ai~~l~~ 225 (446)
.+.||||||+..+ .+|+|+++ +.+. ..+..+ ..+|++.||+.|++.||+.+.+ ..+|.|+|||+++++.|..
T Consensus 4 ~~~iytDGs~~~n~~~~G~G~v~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~aL~~~~~--~~~v~I~tDS~~vi~~i~~ 80 (155)
T 1jl1_A 4 QVEIFTAGSALGNPGPGGYGAILRYRGREKTFSAGY-TRTTNNRMELMAAIVALEALKE--HAEVILSTDSQYVRQGITQ 80 (155)
T ss_dssp CEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCCS--CCEEEEEECCHHHHHHHHT
T ss_pred eEEEEEccccCCCCCceEEEEEEEECCeEEEEecCC-CCCcHHHHHHHHHHHHHHHhCc--CCcEEEEeCHHHHHHHHHH
Confidence 5899999999754 37888655 3332 223333 4679999999999999999876 3799999999999999987
Q ss_pred C--------CC-C--Chh-HHHHHHHHHHHHhcCceEEEEEcCCCCCCccchHhHHHhcCC
Q psy5480 226 P--------SN-T--NPI-VSLIHSCWTDLLCYGKQLAFLWCPSHTGIQGNEAVDRAARNP 274 (446)
Q Consensus 226 ~--------~~-~--~~~-~~~i~~~~~~l~~~~~~V~~~WVpgH~gi~gNe~AD~lAk~a 274 (446)
+ +. . .+. ...+...+..+.. ...|.|.|||||+|++|||.||+|||+|
T Consensus 81 w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~-~~~v~~~wV~gH~g~~~Ne~AD~LA~~a 140 (155)
T 1jl1_A 81 WIHNWKKRGWKTADKKPVKNVDLWQRLDAALG-QHQIKWEWVKGHAGHPENERADELARAA 140 (155)
T ss_dssp THHHHHHTTTBCTTSCBCTTHHHHHHHHHHTT-TCEEEEEECCSSTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhcccccccCCccCCHHHHHHHHHHHc-cCceEEEEcCCCCCCHHHHHHHHHHHHH
Confidence 2 21 1 121 2344444444433 4689999999999999999999999994
No 8
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Probab=99.84 E-value=1.7e-21 Score=174.57 Aligned_cols=122 Identities=23% Similarity=0.171 Sum_probs=90.1
Q ss_pred CcEEEEEcCCcCCC--CceEEEEE-cCCe--EEEEecCCccchhHHHHHHHHHHHHHhhcCCCCceEEEechHHHHHHhc
Q psy5480 150 DFTLCFTDGSKTAN--NTSCAYII-DKTL--ISSFVLNNVNSVYTSELIAVLLCLKHLKFLPKEKFVVISDSKSTLLALS 224 (446)
Q Consensus 150 ~~~~iyTDGS~~~~--~~G~g~v~-~~~~--~~~~~l~~~~t~~~AEl~Ai~~AL~~~~~~~~~~i~I~tDS~~ai~~l~ 224 (446)
..+.||||||+..+ .+|+|+|+ +.+. ..+... ...|++.||+.|++.||+.+.+. .+|.|+|||+++++.|.
T Consensus 7 ~~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~~~~~-~~~Tnn~aEl~Ai~~AL~~~~~~--~~v~I~tDS~~vi~~i~ 83 (166)
T 1ril_A 7 KRVALFTDGACLGNPGPGGWAALLRFHAHEKLLSGGE-ACTTNNRMELKAAIEGLKALKEP--CEVDLYTDSHYLKKAFT 83 (166)
T ss_dssp CCCCEEEEEEESSTTEEEEEEEEECBTTBCCEECCEE-EEECHHHHHHHHHHHHHHSCCSC--CEEEEECCCHHHHHHHH
T ss_pred ccEEEEECccccCCCCCEEEEEEEEECCEEEEEecCC-CCCcHHHHHHHHHHHHHHHhccC--CeEEEEeChHHHHHHHh
Confidence 57899999999854 37888765 3322 222222 36799999999999999988663 58999999999999998
Q ss_pred C----------CCCCCh--h-HHHHHHHHHHHHhcCceEEEEEcCCCCCCccchHhHHHhcCCC
Q psy5480 225 N----------PSNTNP--I-VSLIHSCWTDLLCYGKQLAFLWCPSHTGIQGNEAVDRAARNPS 275 (446)
Q Consensus 225 ~----------~~~~~~--~-~~~i~~~~~~l~~~~~~V~~~WVpgH~gi~gNe~AD~lAk~a~ 275 (446)
+ +...++ + ...+...+..+.. ...|.|.|||||+|++|||.||+|||+|.
T Consensus 84 ~~w~~~W~~~~w~~~~g~~v~n~~l~~~i~~l~~-~~~v~~~wV~gH~g~~~Ne~AD~LAk~a~ 146 (166)
T 1ril_A 84 EGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMA-PHRVRFHFVKGHTGHPENERVDREARRQA 146 (166)
T ss_dssp SSHHHHHHHTTSBCTTSSBCTTHHHHHHHHHHHT-TSEEECCCCCGGGSCTHHHHHHHHHHHHH
T ss_pred hhHHHHHHhcccccccCCccCcHHHHHHHHHHHh-cCeEEEEEeeCCCCchhHHHHHHHHHHHH
Confidence 8 222211 1 2334444444433 35899999999999999999999999943
No 9
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=99.80 E-value=7e-20 Score=163.36 Aligned_cols=125 Identities=17% Similarity=0.186 Sum_probs=87.9
Q ss_pred CCcEEEEEcCCcCCC--C-----ceEEEEE-cC-C---eEEEEec-CCccchhHHHHHHHHHHHHHhhcCCCCceEEEec
Q psy5480 149 QDFTLCFTDGSKTAN--N-----TSCAYII-DK-T---LISSFVL-NNVNSVYTSELIAVLLCLKHLKFLPKEKFVVISD 215 (446)
Q Consensus 149 ~~~~~iyTDGS~~~~--~-----~G~g~v~-~~-~---~~~~~~l-~~~~t~~~AEl~Ai~~AL~~~~~~~~~~i~I~tD 215 (446)
+..++|||||||..+ + +|+|+++ .+ . ....+.. ....+++.||+.|+..||+.++.. ..+|.|+||
T Consensus 5 ~~evviYTDGsc~gNpgp~~~~~aG~Gv~~~~~~~~~~~~~~~~~~tnn~te~~Aei~Al~~al~~al~~-~~~v~I~TD 83 (165)
T 2lsn_A 5 QYEGVFYTDGSAIKSPDPTKSNNAGMGIVHATYKPEYQVLNQWSIPLGNHTAQMAEIAAVEFACKKALKI-PGPVLVITD 83 (165)
T ss_dssp CCSEEEEEEEEEEECSSCTTCEEEEEEEEEECCSSSCCEEEEEEEEESSCCHHHHHHHHHHHHHHHHHHS-SSCEEEEES
T ss_pred CceEEEEEcCCCCCCCCCCCCCcEEEEEEEEECCCccEEeccccCCchHHHHHHHHHHHHHHHHHHHhcC-CCeEEEEeC
Confidence 356899999998743 2 6888654 22 1 2233333 346788899999999999887664 357999999
Q ss_pred hHHHHHHhcCC---------CC--CChh-HHHHHHHHHHHHhcCceEEEEEcCCCCCC------ccchHhHHHhcCC
Q psy5480 216 SKSTLLALSNP---------SN--TNPI-VSLIHSCWTDLLCYGKQLAFLWCPSHTGI------QGNEAVDRAARNP 274 (446)
Q Consensus 216 S~~ai~~l~~~---------~~--~~~~-~~~i~~~~~~l~~~~~~V~~~WVpgH~gi------~gNe~AD~lAk~a 274 (446)
|++++++|..+ .. ..++ -.+++..+.++.....+|.|.|||||+|+ +|||.||+||+++
T Consensus 84 S~Yvi~~it~w~~~Wk~ngw~~~~~~pVkN~dL~~~l~~~~~~~~~v~~~~VkgH~g~~~~~~~~gNe~AD~LA~~g 160 (165)
T 2lsn_A 84 SFYVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLSMKPDITIQHEKGHQPTNTSIHTEGNALADKLATQG 160 (165)
T ss_dssp CHHHHHHHHTHHHHHHHTTSCSCSSSCCSSHHHHHHHHHHHHHCTTCEEEECCSSSCSSSCHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhhhhhhhheeccccccCCCcccCHHHHHHHHHHHhCCCCEEEEEEeCCCCccCCCCChHHHHHHHHHHHh
Confidence 99999999642 11 1121 23444444444455678999999999995 5899999999984
No 10
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=99.78 E-value=7.8e-19 Score=152.54 Aligned_cols=119 Identities=17% Similarity=0.189 Sum_probs=94.8
Q ss_pred cEEEEEcCCcCCC--CceEEEEE-cC--C-e--EEEEecCCccchhHHHHHHHHHHHHHhhcCCCCceEEEechHHHHHH
Q psy5480 151 FTLCFTDGSKTAN--NTSCAYII-DK--T-L--ISSFVLNNVNSVYTSELIAVLLCLKHLKFLPKEKFVVISDSKSTLLA 222 (446)
Q Consensus 151 ~~~iyTDGS~~~~--~~G~g~v~-~~--~-~--~~~~~l~~~~t~~~AEl~Ai~~AL~~~~~~~~~~i~I~tDS~~ai~~ 222 (446)
.++||||||+..+ .+|+|+++ +. + . ..+..+ ..+|++.||+.|++.||+.+.+.+..+|.|+|||+++++.
T Consensus 3 ~~~iy~DGs~~~~~g~~g~G~v~~~~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~aL~~a~~~~~~~v~i~tDS~~vv~~ 81 (141)
T 3hst_B 3 KVVIEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAI-GRATNNVAEYRGLIAGLDDAVKLGATEAAVLMDSKLVVEQ 81 (141)
T ss_dssp EEEEEEEEEESSSSEEEEEEEEEEETTSCSEEEEEEEEE-EEECHHHHHHHHHHHHHHHHHHHTCSEEEEEESCHHHHHH
T ss_pred EEEEEEecCCCCCCCCcEEEEEEEeCCCCcEEEeeeccC-CCCchHHHHHHHHHHHHHHHHHCCCceEEEEeChHHHHHH
Confidence 5899999998854 47888654 32 2 1 222333 4789999999999999999998888999999999999999
Q ss_pred hcCCCC-CChhHHHHHHHHHHHHhcCceEEEEEcCCCCCCccchHhHHHhcCC
Q psy5480 223 LSNPSN-TNPIVSLIHSCWTDLLCYGKQLAFLWCPSHTGIQGNEAVDRAARNP 274 (446)
Q Consensus 223 l~~~~~-~~~~~~~i~~~~~~l~~~~~~V~~~WVpgH~gi~gNe~AD~lAk~a 274 (446)
+.+.+. .++.+..+...+..+...+..|.|.|||+ ++|+.||+|||+|
T Consensus 82 i~~~~~~~~~~l~~~~~~i~~l~~~~~~v~~~~V~~----~~N~~AD~LA~~a 130 (141)
T 3hst_B 82 MSGRWKVKHPDLLKLYVQAQALASQFRRINYEWVPR----ARNTYADRLANDA 130 (141)
T ss_dssp HTTSSCCCSHHHHHHHHHHHHHHTTSSEEEEEECCG----GGCHHHHHHHHHH
T ss_pred HhCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEcCC----cccHHHHHHHHHH
Confidence 998653 45555566666666667778999999994 8999999999983
No 11
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=99.78 E-value=1e-18 Score=151.35 Aligned_cols=119 Identities=18% Similarity=0.231 Sum_probs=92.1
Q ss_pred cEEEEEcCCcCCC--CceEEEEE-c-CC-e--EEEEecCCccchhHHHHHHHHHHHHHhhcCCCC----ceEEEechHHH
Q psy5480 151 FTLCFTDGSKTAN--NTSCAYII-D-KT-L--ISSFVLNNVNSVYTSELIAVLLCLKHLKFLPKE----KFVVISDSKST 219 (446)
Q Consensus 151 ~~~iyTDGS~~~~--~~G~g~v~-~-~~-~--~~~~~l~~~~t~~~AEl~Ai~~AL~~~~~~~~~----~i~I~tDS~~a 219 (446)
.++||||||+..+ .+|+|+++ + ++ . ..+..+ ..+|++.||+.|++.||+.+.+.+.. +|.|+|||+++
T Consensus 3 ~~~iy~DGs~~~n~g~~G~G~v~~~~~g~~~~~~~~~~-~~~tn~~aEl~A~~~aL~~a~~~~~~~~~~~v~i~tDS~~v 81 (140)
T 3u3g_D 3 KIIIYTDGGARGNPGPAGIGVVITDEKGNTLHESSAYI-GETTNNVAEYEALIRALEDLQMFGDKLVDMEVEVRMDSELI 81 (140)
T ss_dssp EEEEEEEEEESSTTEEEEEEEEEECTTSCEEEEEEEEE-EEECHHHHHHHHHHHHHHHHGGGGGGGTTCEEEEEESCHHH
T ss_pred eEEEEEecCCCCCCCCcEEEEEEEeCCCCEEEEEEeeC-CCCchHHHHHHHHHHHHHHHHHcCCCCCCceEEEEeChHHH
Confidence 5899999999754 48888665 3 22 2 222233 35799999999999999999887666 99999999999
Q ss_pred HHHhcCCCC-CChhHHHHHHHHHHH-HhcCceEEEEEcCCCCCCccchHhHHHhcCC
Q psy5480 220 LLALSNPSN-TNPIVSLIHSCWTDL-LCYGKQLAFLWCPSHTGIQGNEAVDRAARNP 274 (446)
Q Consensus 220 i~~l~~~~~-~~~~~~~i~~~~~~l-~~~~~~V~~~WVpgH~gi~gNe~AD~lAk~a 274 (446)
++.+.+.+. .++.+..+...+..+ ......|.|.||| .++||.||+|||+|
T Consensus 82 i~~i~~~~~~~~~~l~~~~~~i~~l~~~~~~~v~~~~V~----~~~N~~AD~LA~~a 134 (140)
T 3u3g_D 82 VRQMQGVYKVKEPTLKEKFAKIAHIKMERVPNLVFVHIP----REKNARADELVNEA 134 (140)
T ss_dssp HHHHTTSSCCCCGGGHHHHHHHHHHHHHHCTTCEEEECC----GGGGHHHHHHHHHH
T ss_pred HHHhCCCcccCCHHHHHHHHHHHHHhhcCCCcEEEEEcC----chhhHHHHHHHHHH
Confidence 999998764 444444555555555 5666799999999 48999999999983
No 12
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=99.76 E-value=2e-18 Score=183.01 Aligned_cols=118 Identities=23% Similarity=0.309 Sum_probs=92.9
Q ss_pred CCCcEEEEEcCCcCCCC--ceEEEEEcCCeEEEEecCCccchhHHHHHHHHHHHHHhhcCCCCceEEEechHHHHHHhcC
Q psy5480 148 YQDFTLCFTDGSKTANN--TSCAYIIDKTLISSFVLNNVNSVYTSELIAVLLCLKHLKFLPKEKFVVISDSKSTLLALSN 225 (446)
Q Consensus 148 ~~~~~~iyTDGS~~~~~--~G~g~v~~~~~~~~~~l~~~~t~~~AEl~Ai~~AL~~~~~~~~~~i~I~tDS~~ai~~l~~ 225 (446)
..+.+.||||||+..++ +|+|+++..+....... ..+||+.||+.|++.||+. ...++.|+|||++|++.+.+
T Consensus 433 ~~~~~~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~-~~~TNn~aEl~A~i~aL~~----~~~~v~I~tDS~~v~~~i~~ 507 (555)
T 1mu2_A 433 IPGAETFYTDGSCNRQSKEGKAGYVTDRGKDKVKKL-EQTTNQQAELEAFAMALTD----SGPKVNIIVDSQYVMGIVAS 507 (555)
T ss_dssp CTTCEEEEEEEEECTTTCCEEEEEEETTSCEEEEEE-SSCCHHHHHHHHHHHHHHT----SCSEEEEEESCHHHHHHHHT
T ss_pred CCCceEEEEcccccCCCCCceEEEEEEeCCEeeccC-CCCCHHHHHHHHHHHHHHc----CCCeEEEEEehHHHHHHHhc
Confidence 35679999999987543 78887764433333333 4789999999999999998 46799999999999999998
Q ss_pred CCCC--ChhHHHHHHHHHHHHhcCceEEEEEcCCCCCCccchHhHHHhcCC
Q psy5480 226 PSNT--NPIVSLIHSCWTDLLCYGKQLAFLWCPSHTGIQGNEAVDRAARNP 274 (446)
Q Consensus 226 ~~~~--~~~~~~i~~~~~~l~~~~~~V~~~WVpgH~gi~gNe~AD~lAk~a 274 (446)
+... .++..++.+.+ ..+..|.|.|||||+|++|||.||+|||+|
T Consensus 508 ~~~~~~~~l~~~~~~~~----~~~~~v~~~wV~~H~g~~~Ne~AD~LA~~a 554 (555)
T 1mu2_A 508 QPTESESKIVNQIIEEM----IKKEAIYVAWVPAHKGIGGNQEVDHLVSQG 554 (555)
T ss_dssp CCSEESCHHHHHHHHHH----HHCSEEEEEECCSSSCCTTHHHHHHHHHTT
T ss_pred ccccccHHHHHHHHHHh----ccCCcEEEEEEECCCCChhHHHHHHHHHhh
Confidence 6532 34555544443 346789999999999999999999999984
No 13
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=99.76 E-value=1.1e-18 Score=185.22 Aligned_cols=117 Identities=21% Similarity=0.334 Sum_probs=91.0
Q ss_pred CCCcEEEEEcCCcCCC--CceEEEEEcCCeEEEEecCCccchhHHHHHHHHHHHHHhhcCCCCceEEEechHHHHHHhcC
Q psy5480 148 YQDFTLCFTDGSKTAN--NTSCAYIIDKTLISSFVLNNVNSVYTSELIAVLLCLKHLKFLPKEKFVVISDSKSTLLALSN 225 (446)
Q Consensus 148 ~~~~~~iyTDGS~~~~--~~G~g~v~~~~~~~~~~l~~~~t~~~AEl~Ai~~AL~~~~~~~~~~i~I~tDS~~ai~~l~~ 225 (446)
..+.+.||||||+..+ .+|+|+++..+....... ..+||+.||+.|++.||+.+ ..++.|+|||++|++.+.+
T Consensus 436 ~~~~~~iytDGs~~~n~g~~g~g~v~~~~~~~~~~~-~~~TNn~aEl~Ai~~aL~~~----~~~v~I~tDS~~vi~~i~~ 510 (557)
T 2zd1_A 436 IVGAETFYVDGAANRETKLGKAGYVTNKGRQKVVPL-TNTTNQKTELQAIYLALQDS----GLEVNIVTDSQYALGIIQA 510 (557)
T ss_dssp CTTSCEEEEEEEECTTTCCEEEEEEETTSCEEEEEE-CSCCHHHHHHHHHHHHHHHS----CSEEEEEECCHHHHHHHTT
T ss_pred CCCCEEEEEccCCCCCCCceEEEEEEECCcEEEecC-CCCCHHHHHHHHHHHHHHhC----CCcEEEEeChHHHHHHHhc
Confidence 3467999999998754 378887765543333333 47899999999999999998 5789999999999999999
Q ss_pred CCCC--ChhHHHHHHHHHHHHhcCceEEEEEcCCCCCCccchHhHHHhcC
Q psy5480 226 PSNT--NPIVSLIHSCWTDLLCYGKQLAFLWCPSHTGIQGNEAVDRAARN 273 (446)
Q Consensus 226 ~~~~--~~~~~~i~~~~~~l~~~~~~V~~~WVpgH~gi~gNe~AD~lAk~ 273 (446)
+... .++..++.+.+ .....|.|.|||||+|++|||.||+|||+
T Consensus 511 ~~~~~~~~l~~~~~~~l----~~~~~v~~~wV~~H~g~~~Ne~AD~LA~~ 556 (557)
T 2zd1_A 511 QPDKSESELVNQIIEQL----IKKEKVYLAWVPAHKGIGGNEQVDKLVSA 556 (557)
T ss_dssp CCSEESSHHHHHHHHHH----HHCSEEEEEECCSSSCCTTCCGGGGCC--
T ss_pred CCccCCHHHHHHHHHHH----hcCCCEEEEEcCCCCCChhHHHHHHHHhc
Confidence 7654 24555544433 23568999999999999999999999997
No 14
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=99.73 E-value=1.1e-17 Score=146.91 Aligned_cols=118 Identities=13% Similarity=0.186 Sum_probs=88.9
Q ss_pred EEEEEcCCcC-C--CCceE-EEEE-cCCe-EEEE--ecC---CccchhHHHHHHHHHHHHHhhcCCCCceEEEechHHHH
Q psy5480 152 TLCFTDGSKT-A--NNTSC-AYII-DKTL-ISSF--VLN---NVNSVYTSELIAVLLCLKHLKFLPKEKFVVISDSKSTL 220 (446)
Q Consensus 152 ~~iyTDGS~~-~--~~~G~-g~v~-~~~~-~~~~--~l~---~~~t~~~AEl~Ai~~AL~~~~~~~~~~i~I~tDS~~ai 220 (446)
+.||||||+. . +++|+ |+++ +++. .... .++ ...|++.||+.|++.||+.+.+.+..+|.|+|||++++
T Consensus 2 ~~iy~DGs~~~~n~g~~G~~G~vi~~~g~~~~~~~~~~~~~~~~~tnn~aEl~A~~~aL~~a~~~g~~~v~i~tDS~~vi 81 (149)
T 2ehg_A 2 IIGYFDGLCEPKNPGGIATFGFVIYLDNRKIEGYGLAEKPFSINSTNNVAEYSGLICLMETMLRLGISSPIIKGDSQLVI 81 (149)
T ss_dssp CEEEEEEEEESSSSSSEEEEEEEEECSSCEEEEEEECSCTTCTTCCHHHHHHHHHHHHHHHHHHHTCCSCEEEESCHHHH
T ss_pred EEEEEeeccCCCCCChheEEEEEEEECCEEEEEeccccCCCCCCccHHHHHHHHHHHHHHHHHHcCCCEEEEEeChHHHH
Confidence 6899999987 2 45785 8654 3332 2222 222 37899999999999999999988888999999999999
Q ss_pred HHhcCCCCC-ChhHHHHHHHHHHHHhcCceEEEEEcCCCCCCccchHhHHHhcCC
Q psy5480 221 LALSNPSNT-NPIVSLIHSCWTDLLCYGKQLAFLWCPSHTGIQGNEAVDRAARNP 274 (446)
Q Consensus 221 ~~l~~~~~~-~~~~~~i~~~~~~l~~~~~~V~~~WVpgH~gi~gNe~AD~lAk~a 274 (446)
+.+.+++.. ++....+.+.+..+.... .|.|.|||+ ++|+.||+|||+|
T Consensus 82 ~~i~~~w~~~~~~~~~l~~~i~~l~~~~-~v~~~~V~~----~~N~~AD~LA~~a 131 (149)
T 2ehg_A 82 KQMNGEYKVKAKRIIPLYEKAIELKKKL-NATLIWVPR----EENKEADRLSRVA 131 (149)
T ss_dssp HHHTTSSCCCCTTHHHHHHHHHHHHHHH-TCEEEECCG----GGCHHHHHHHHHH
T ss_pred HHHhCccccCCHHHHHHHHHHHHHHhcC-CEEEEEcCC----cccHHHHHHHHHH
Confidence 999997543 344445555454443433 599999998 5999999999994
No 15
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*
Probab=99.36 E-value=2.8e-13 Score=117.46 Aligned_cols=120 Identities=13% Similarity=0.020 Sum_probs=81.9
Q ss_pred cCCCcEEEEEcCCcCCC--CceEEEEEc-CCeEE--EEecCCccchhHHHHHHHHHHHHHhhcCCCCceEEEechHHHHH
Q psy5480 147 KYQDFTLCFTDGSKTAN--NTSCAYIID-KTLIS--SFVLNNVNSVYTSELIAVLLCLKHLKFLPKEKFVVISDSKSTLL 221 (446)
Q Consensus 147 ~~~~~~~iyTDGS~~~~--~~G~g~v~~-~~~~~--~~~l~~~~t~~~AEl~Ai~~AL~~~~~~~~~~i~I~tDS~~ai~ 221 (446)
.+.+.+.||||||+..+ .+|+|+|+. ++... +..++ .+||+.||++|++.||+.+.+.+. +|.|+|||+++++
T Consensus 7 ~~~~~~~iy~DGa~~gNpG~~G~G~vl~~~g~~~~~~~~~~-~~TNN~aEl~A~i~aL~~~~~~~~-~v~i~tDS~~vi~ 84 (142)
T 1zbf_A 7 EEIIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIP-IGTNNMGEFLAIVHGLRYLKERNS-RKPIYSNSQTAIK 84 (142)
T ss_dssp -CCCSSSEEEEEEECSSSEEEEEEEEETTTCCEEEECCCEE-EECHHHHHHHHHHHHHHHHHHTTC-CCCEEESCHHHHH
T ss_pred CCCCeEEEEEeeccCCCCCCeEEEEEEEeCCEEEEEecccC-CcCcHHHHHHHHHHHHHHHHhCCC-eEEEEEehHHHHH
Confidence 34567899999999754 478887663 22222 12222 679999999999999999988666 9999999999999
Q ss_pred HhcCCCCC-----ChhHHHHHHHHHHHH--hcCceEEEEEcCCCCCCccchHhH
Q psy5480 222 ALSNPSNT-----NPIVSLIHSCWTDLL--CYGKQLAFLWCPSHTGIQGNEAVD 268 (446)
Q Consensus 222 ~l~~~~~~-----~~~~~~i~~~~~~l~--~~~~~V~~~WVpgH~gi~gNe~AD 268 (446)
.+.+.... .....++.+.+.++. .+...+....|+-|++.-||..||
T Consensus 85 w~~~~~~k~~~~~~v~n~dLw~~l~~~~~w~~~~~~~~~~~kw~~~~~ge~pad 138 (142)
T 1zbf_A 85 WVKDKKAKSTLVRNEETALIWKLVDEAEEWLNTHTYETPILKWQTDKWGEIKAD 138 (142)
T ss_dssp HHHHTCCCCCCCCSTTTHHHHHHHHHHHHHHHHCCCCCCEEECCHHHHCSCTTC
T ss_pred HHHcCCccCCCCCCcccHHHHHHHHHHHHHHhhCCCceeEEEeccCccCcCccc
Confidence 99877632 112333333333221 112344555577788888999888
No 16
>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A
Probab=99.15 E-value=8.3e-11 Score=100.21 Aligned_cols=77 Identities=12% Similarity=0.041 Sum_probs=57.9
Q ss_pred CCcEEEEEcCCcCCC--CceEE-EEEcCCe--EEEEecCCccchhHHHHHHHHHHHHHhhcCCCCceEEEechHHHHHHh
Q psy5480 149 QDFTLCFTDGSKTAN--NTSCA-YIIDKTL--ISSFVLNNVNSVYTSELIAVLLCLKHLKFLPKEKFVVISDSKSTLLAL 223 (446)
Q Consensus 149 ~~~~~iyTDGS~~~~--~~G~g-~v~~~~~--~~~~~l~~~~t~~~AEl~Ai~~AL~~~~~~~~~~i~I~tDS~~ai~~l 223 (446)
+....||||||+..+ .+|+| |+...+. .....+ ..+||+.||++|++.||+.+.+.+.. +.|+|||++|++.+
T Consensus 3 p~~~~iytDGac~GNPGp~G~ggV~~~~g~~~~~~g~~-~~tTNN~aEl~A~i~aL~~l~~~~~~-v~i~tDSqyVi~wi 80 (134)
T 4htu_A 3 IIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPI-PIGTNNMGEFLAIVHGLRYLKERNSR-KPIYSNSQTAIKWV 80 (134)
T ss_dssp CCSSSEEEEEEEETTTEEEEEEEEETTTCCEEEEEEEE-EEECHHHHHHHHHHHHHHHHHHTTCC-CCEEESCHHHHHHH
T ss_pred ccceEEEEeeccCCCCCCeEEEEEEEECCEEEEEecCC-CCCchHHHHHHHHHHHHHHHHhCCCC-EEEEcchHHHHHHH
Confidence 456789999999754 37885 4444332 222233 37899999999999999999875443 89999999999999
Q ss_pred cCCC
Q psy5480 224 SNPS 227 (446)
Q Consensus 224 ~~~~ 227 (446)
.+..
T Consensus 81 ~~~~ 84 (134)
T 4htu_A 81 KDKK 84 (134)
T ss_dssp HHTC
T ss_pred HcCC
Confidence 8643
No 17
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2
Probab=64.36 E-value=1.5 Score=44.40 Aligned_cols=74 Identities=14% Similarity=0.025 Sum_probs=46.8
Q ss_pred CCcEEEEEcCCcCCCCceEEEEEcC--C--e---EEEEec---CCccchhHHHHHHHHHHHHHhhcC-CCCceEEEechH
Q psy5480 149 QDFTLCFTDGSKTANNTSCAYIIDK--T--L---ISSFVL---NNVNSVYTSELIAVLLCLKHLKFL-PKEKFVVISDSK 217 (446)
Q Consensus 149 ~~~~~iyTDGS~~~~~~G~g~v~~~--~--~---~~~~~l---~~~~t~~~AEl~Ai~~AL~~~~~~-~~~~i~I~tDS~ 217 (446)
...+.+|||+|.. ++| |++... + . ..+..+ ...-++++.|+.||..|++..... ...+++|+||+.
T Consensus 344 ~~~~~l~~DAS~~--~~g-avL~q~~~~~~~~i~y~Sk~l~~~e~~ys~~ekEllAi~~a~~~~~~yl~g~~~~v~tDh~ 420 (455)
T 1rw3_A 344 TKPFELFVDEKQG--YAK-GVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMGQPLVIKAPHA 420 (455)
T ss_dssp CCTTSCEEEEEEC--SSS-BEECCBCTTTTCCCCCCCBCSCSSCSSSCCSSHHHHHHHHHHHHHHGGGCSSCEEEECSSC
T ss_pred CCcEEEEEeccCC--cce-eEEEEecCCcEEEEEEEcccCCccccccchHHHHHHHHHHHHHHHHHHcCCCcEEEEecCh
Confidence 3456899999843 233 233211 1 0 112222 235677899999999999877652 457899999996
Q ss_pred HHHHHhcCC
Q psy5480 218 STLLALSNP 226 (446)
Q Consensus 218 ~ai~~l~~~ 226 (446)
++..+.+.
T Consensus 421 -~~~~l~~~ 428 (455)
T 1rw3_A 421 -VEALVKQP 428 (455)
T ss_dssp -TTTTSSST
T ss_pred -HHHHhCCC
Confidence 55555544
No 18
>2zd1_B P51 RT; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} SCOP: e.8.1.2 PDB: 2ykm_B* 2ykn_B* 2ze2_B* 3bgr_B* 3ig1_B* 3irx_B* 3is9_B* 3qo9_B* 3v4i_B* 3v6d_B* 3v81_B* 3klf_B* 3kk1_B* 3kjv_B* 3kk2_B* 3kk3_B* 2be2_B* 1n5y_B* 1bqm_B* 1n6q_B* ...
Probab=56.81 E-value=14 Score=36.82 Aligned_cols=69 Identities=4% Similarity=-0.077 Sum_probs=41.7
Q ss_pred CCcEEEEEcCCcCCCCceEEEEE-cCC--eEEEEec--CCccchhHHHHHH-HHHHHHHhhc----CCCCceEEEechHH
Q psy5480 149 QDFTLCFTDGSKTANNTSCAYII-DKT--LISSFVL--NNVNSVYTSELIA-VLLCLKHLKF----LPKEKFVVISDSKS 218 (446)
Q Consensus 149 ~~~~~iyTDGS~~~~~~G~g~v~-~~~--~~~~~~l--~~~~t~~~AEl~A-i~~AL~~~~~----~~~~~i~I~tDS~~ 218 (446)
...+.++||+|.. .++|+++ ..+ ...+.++ ..+...++-|++| |+.||+.... .....++++||++.
T Consensus 322 ~~~~~l~~das~~---g~~g~vl~q~~~~~~~s~~~~~~~~y~~~~~e~la~vv~al~~~r~yl~G~~~~~~i~~td~~~ 398 (428)
T 2zd1_B 322 SKDLIAEIQKQGQ---GQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETW 398 (428)
T ss_dssp TSCCEEEEEEEET---TEEEEEEESSTTCEEEEEEEECCSSCTTCHHHHHHHHHHHHHHHHHHHHSSCCEEEESSCHHHH
T ss_pred CCCEEEEEecCCC---CcEEEEEecCCCceeeecccchhhhcccchHHHHHHHHHHhhccceEEECCCCcEECCccHHHH
Confidence 4668999999842 1335443 221 2223333 3344556677777 9999985543 23456788999986
Q ss_pred HH
Q psy5480 219 TL 220 (446)
Q Consensus 219 ai 220 (446)
..
T Consensus 399 ~~ 400 (428)
T 2zd1_B 399 ET 400 (428)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 19
>3alr_A Nanos protein; zinc-finger, translational repression, RNA, 3'-UTR, metal BI protein; 2.10A {Danio rerio}
Probab=40.70 E-value=11 Score=29.76 Aligned_cols=27 Identities=26% Similarity=0.498 Sum_probs=22.6
Q ss_pred CCcc-CCCCCccchhhc-cccchHHhhhC
Q psy5480 391 STCR-CGETLSVQHILT-CTLHGHIRASL 417 (446)
Q Consensus 391 ~~C~-Cg~~~t~~Hil~-Cp~~~~~R~~~ 417 (446)
-.|+ ||+..+-.|.+- ||+.......+
T Consensus 72 Y~CpiCGATGd~AHT~kYCP~~~~~~~sv 100 (106)
T 3alr_A 72 YKCPLCGATGAKAHTKRFCPMVDKNYCSV 100 (106)
T ss_dssp CCCTTTCCCGGGCCCGGGCTTCGGGGCCC
T ss_pred ccCCCCCCcCCcccceecCCCCCCccCce
Confidence 4899 999999999999 99987655444
No 20
>1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP} SCOP: b.1.18.2 b.71.1.1 c.1.8.1
Probab=28.87 E-value=40 Score=35.00 Aligned_cols=77 Identities=16% Similarity=0.033 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHhhcCCCCceEEEe--chHHHHHHhcCCCCC---------ChhHHHHHHHHHHHHhcCceEEEEEcCCC
Q psy5480 190 SELIAVLLCLKHLKFLPKEKFVVIS--DSKSTLLALSNPSNT---------NPIVSLIHSCWTDLLCYGKQLAFLWCPSH 258 (446)
Q Consensus 190 AEl~Ai~~AL~~~~~~~~~~i~I~t--DS~~ai~~l~~~~~~---------~~~~~~i~~~~~~l~~~~~~V~~~WVpgH 258 (446)
+-+.+|...|.++.+++...|.+.- ++.+ ...+.. -+-..++.++++++.++|.+|.+-||+.|
T Consensus 169 Gd~~gi~~~LdyLk~LGvt~I~L~Pi~~~~~-----~~GYd~~dy~~idp~~Gt~~df~~lv~~~H~~Gi~VilD~V~NH 243 (583)
T 1ea9_C 169 GDLQGVIDHLDHLSKLGVNAVYFTPLFKATT-----NHKYDTEDYFQIDPQFGDKDTLKKLVDLCHERGIRVLLDAVFNH 243 (583)
T ss_dssp CCHHHHHHTHHHHHHHTCSEEEECCCSSCSS-----SSTTSCSCTTCCCTTTCCHHHHHHHHHHHTTTTCEEEEECCCSB
T ss_pred cCHHHHHHhhHHHHHcCCCEEEECCCccCCC-----CCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEEcccc
Confidence 4577888889999888777666541 2110 111111 12367888888999999999999999999
Q ss_pred CCCccchHhHHHh
Q psy5480 259 TGIQGNEAVDRAA 271 (446)
Q Consensus 259 ~gi~gNe~AD~lA 271 (446)
++......-|.++
T Consensus 244 ~~~~~~~f~~~~~ 256 (583)
T 1ea9_C 244 SGRTFPPFVDVLK 256 (583)
T ss_dssp CCTTTHHHHHHHT
T ss_pred CCCccHHHHHHHh
Confidence 9976544444443
No 21
>1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A*
Probab=22.67 E-value=41 Score=34.86 Aligned_cols=76 Identities=14% Similarity=-0.023 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHhhcCCCCceEEE--echHHHHHHhcCCCCC---------ChhHHHHHHHHHHHHhcCceEEEEEcCCC
Q psy5480 190 SELIAVLLCLKHLKFLPKEKFVVI--SDSKSTLLALSNPSNT---------NPIVSLIHSCWTDLLCYGKQLAFLWCPSH 258 (446)
Q Consensus 190 AEl~Ai~~AL~~~~~~~~~~i~I~--tDS~~ai~~l~~~~~~---------~~~~~~i~~~~~~l~~~~~~V~~~WVpgH 258 (446)
+-+.+|...|.++.+++...|.+. .++.+ ...+.. -+-..++.++++++.++|.+|.+-||+.|
T Consensus 173 G~~~gi~~~LdyLk~LGvt~I~L~Pi~~~~~-----~~GYd~~dy~~idp~~Gt~~df~~lv~~~H~~Gi~VilD~V~NH 247 (588)
T 1j0h_A 173 GDLQGIIDHLDYLVDLGITGIYLTPIFRSPS-----NHKYDTADYFEVDPHFGDKETLKTLIDRCHEKGIRVMLDAVFNH 247 (588)
T ss_dssp CCHHHHHHTHHHHHHHTCCEEEECCCEECSS-----SSCCSCSEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECCSB
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCcccCCC-----CCCcCccccCccCccCCCHHHHHHHHHHHHHCCCEEEEEECcCc
Confidence 457888888999988877666554 12211 112211 12357888888888899999999999999
Q ss_pred CCCccchHhHHH
Q psy5480 259 TGIQGNEAVDRA 270 (446)
Q Consensus 259 ~gi~gNe~AD~l 270 (446)
++.......|.+
T Consensus 248 ~~~~~~~f~~~~ 259 (588)
T 1j0h_A 248 CGYEFAPFQDVW 259 (588)
T ss_dssp CCTTCHHHHHHH
T ss_pred CcccchhHHHHH
Confidence 997765544444
No 22
>1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase; 2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A* 1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A* 1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A
Probab=22.38 E-value=42 Score=34.82 Aligned_cols=77 Identities=17% Similarity=0.008 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHhhcCCCCceEEEe--chHHHHHHhcCCCCC---------ChhHHHHHHHHHHHHhcCceEEEEEcCCC
Q psy5480 190 SELIAVLLCLKHLKFLPKEKFVVIS--DSKSTLLALSNPSNT---------NPIVSLIHSCWTDLLCYGKQLAFLWCPSH 258 (446)
Q Consensus 190 AEl~Ai~~AL~~~~~~~~~~i~I~t--DS~~ai~~l~~~~~~---------~~~~~~i~~~~~~l~~~~~~V~~~WVpgH 258 (446)
+-+.+|..-|.++.+++...|.+.- ++.+ ...+.. -+-..++.++++++.++|.+|.+-||+.|
T Consensus 170 G~~~gi~~~LdyLk~LGvt~I~L~Pi~~~~~-----~~GYd~~dy~~id~~~Gt~~dfk~lv~~~H~~Gi~VilD~V~NH 244 (585)
T 1wzl_A 170 GDLKGVIDRLPYLEELGVTALYFTPIFASPS-----HHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAVFNH 244 (585)
T ss_dssp CCHHHHHHTHHHHHHHTCCEEEECCCEECSS-----SSCCSCSEEEEECTTTCCHHHHHHHHHHHHTTTCEEEEEECCSB
T ss_pred CCHHHHHHHhHHHHHcCCCEEEECCcccCCC-----CCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEEcCCc
Confidence 4577888889999888776665431 2210 111111 12357888888889999999999999999
Q ss_pred CCCccchHhHHHh
Q psy5480 259 TGIQGNEAVDRAA 271 (446)
Q Consensus 259 ~gi~gNe~AD~lA 271 (446)
++......-|.++
T Consensus 245 ~~~~~~~f~~~~~ 257 (585)
T 1wzl_A 245 AGDQFFAFRDVLQ 257 (585)
T ss_dssp CCTTSHHHHHHHH
T ss_pred CCCccHHHHHHHh
Confidence 9976543434443
No 23
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=20.94 E-value=36 Score=28.00 Aligned_cols=27 Identities=19% Similarity=0.363 Sum_probs=16.2
Q ss_pred CCCCCcc-CCCCC-ccchhhc-cccchHHh
Q psy5480 388 APPSTCR-CGETL-SVQHILT-CTLHGHIR 414 (446)
Q Consensus 388 ~~~~~C~-Cg~~~-t~~Hil~-Cp~~~~~R 414 (446)
..-|.|+ |+..- -.+--++ ||--..+.
T Consensus 25 ~~lP~CP~C~seytYeDg~l~vCPeC~hEW 54 (138)
T 2akl_A 25 STLPPCPQCNSEYTYEDGALLVCPECAHEW 54 (138)
T ss_dssp CCSCCCTTTCCCCCEECSSSEEETTTTEEE
T ss_pred ccCCCCCCCCCcceEecCCeEECCcccccc
Confidence 4469999 99432 2233467 98655433
No 24
>1ht6_A AMY1, alpha-amylase isozyme 1; barley, beta-alpha-barrel, hydrolase; 1.50A {Hordeum vulgare} SCOP: b.71.1.1 c.1.8.1 PDB: 1p6w_A* 1rpk_A* 3bsg_A 2qpu_A* 1rp8_A* 1rp9_A* 2qps_A 3bsh_A* 1ava_A 1amy_A 1bg9_A*
Probab=20.84 E-value=52 Score=32.25 Aligned_cols=73 Identities=10% Similarity=-0.138 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhhcCCCCceEEE------echHHHHHHhcCCC-CCChhHHHHHHHHHHHHhcCceEEEEEcCCCCCCcc
Q psy5480 191 ELIAVLLCLKHLKFLPKEKFVVI------SDSKSTLLALSNPS-NTNPIVSLIHSCWTDLLCYGKQLAFLWCPSHTGIQG 263 (446)
Q Consensus 191 El~Ai~~AL~~~~~~~~~~i~I~------tDS~~ai~~l~~~~-~~~~~~~~i~~~~~~l~~~~~~V~~~WVpgH~gi~g 263 (446)
=+.+|..-|..+.+.+...|.|- +|.-+...-..... +.-+-..++.++++++.++|.+|.+-+|+.|++...
T Consensus 19 ~~~gi~~~ldyl~~lGv~~i~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~lv~~~h~~Gi~VilD~V~NH~~~~~ 98 (405)
T 1ht6_A 19 WYNMMMGKVDDIAAAGVTHVWLPPPSHSVSNEGYMPGRLYDIDASKYGNAAELKSLIGALHGKGVQAIADIVINHRCADY 98 (405)
T ss_dssp HHHHHHTTHHHHHHTTCCEEEECCCSCBSSTTSSSBCCTTCGGGCTTCCHHHHHHHHHHHHHTTCEEEEEECCSBCCCSE
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCccccccCCCccCCCHHHHHHHHHHHHHCCCEEEEEECcCcccCCC
Confidence 36777777888887776666543 11111100000001 111345778888888889999999999999998753
No 25
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*
Probab=20.56 E-value=1.8e+02 Score=24.22 Aligned_cols=54 Identities=13% Similarity=0.113 Sum_probs=33.0
Q ss_pred CCceEEEEEcC-CeEEEEecCC--ccchhHHHHHHHHHHHHHhhcCCCCceEEEechH
Q psy5480 163 NNTSCAYIIDK-TLISSFVLNN--VNSVYTSELIAVLLCLKHLKFLPKEKFVVISDSK 217 (446)
Q Consensus 163 ~~~G~g~v~~~-~~~~~~~l~~--~~t~~~AEl~Ai~~AL~~~~~~~~~~i~I~tDS~ 217 (446)
..+|++++..+ .......... ......||..||..|... -......+.|++|..
T Consensus 36 f~VGAal~~~dG~i~~G~NvEnas~~~t~cAE~~Ai~~A~~~-G~~~l~~i~v~~~~~ 92 (146)
T 2fr5_A 36 FPVGAALLTGDGRIFSGCNIENACYPLGVCAERTAIQKAISE-GYKDFRAIAISSDLQ 92 (146)
T ss_dssp CCEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHT-TCCCEEEEEEEESCS
T ss_pred CCEEEEEEeCCCcEEEEEeccccCCCCCcCHHHHHHHHHHhC-CCCceEEEEEEeCCC
Confidence 35888866544 3343333321 112357999999999875 233457788998853
Done!