RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5480
(446 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 67.4 bits (164), Expect = 4e-12
Identities = 53/357 (14%), Positives = 115/357 (32%), Gaps = 94/357 (26%)
Query: 124 SFDKKENVSSVVFQQRFHELVQSKYQDFTLCFTDGSKTANNTSCAYIIDKTLISSF---V 180
F + ++ ELV K+ + + SK ++ F
Sbjct: 47 GFAADDEPTTPA------ELV-GKFLGYVSSLVEPSKVGQFDQVL----NLCLTEFENCY 95
Query: 181 L--NNVNSVYTSELIAVLLCLKHLKFLPKEKFVVISDSKSTLLA--LSNPSNTNPIVS-L 235
L N+++++ A L ++ L K K ++ K+ + A ++ S L
Sbjct: 96 LEGNDIHAL------AAKLLQENDTTLVKTKELI----KNYITARIMAKRPFDKKSNSAL 145
Query: 236 IHSCWTD----LLCYGKQ---------LAFLWCPSHTGIQGNEAVDRAARNPSASLPPLK 282
+ + +G Q L L+ H + + + +A +L L
Sbjct: 146 FRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVG--DLIKFSA----ETLSEL- 198
Query: 283 LCSPEDFKPFICKLIKDL--WQNSWSNIPNSEAVDRAARNPSASLPPLKL---------C 331
+ + D + + + ++ W + SN P+ + + S P + +
Sbjct: 199 IRTTLDAEKVFTQGL-NILEWLENPSNTPDKDYLLSIP----ISCPLIGVIQLAHYVVTA 253
Query: 332 -----SPEDFKPFIMIGRTGSIKPVI--------GPWPSSDRQSRYEEVVICRMRIGHTR 378
+P + + + G TG + ++ W S R + + IG R
Sbjct: 254 KLLGFTPGELRS-YLKGATGHSQGLVTAVAIAETDSWESFFVSVR--KAITVLFFIG-VR 309
Query: 379 ATHGHLFKRAPPS----TCRCGET-----LSVQHILTCTLHGHIR---ASLPAPPAL 423
+ PPS + E LS+ ++ + ++ + LPA +
Sbjct: 310 CYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQV 366
Score = 41.6 bits (97), Expect = 6e-04
Identities = 90/451 (19%), Positives = 134/451 (29%), Gaps = 164/451 (36%)
Query: 15 RIATGALRSSPIPSLL---VESGVPPL------Q---------LRRSQLAMSYAVKIASC 56
RI S L V G L Q LR L +Y V +
Sbjct: 130 RIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELR--DLYQTYHVLVGDL 187
Query: 57 --PANPTYSLLFPDNIDAD-IYP--------LNKPK---------------PLCLRVREL 90
+ T S L +DA+ ++ L P PL + V +L
Sbjct: 188 IKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPL-IGVIQL 246
Query: 91 ALFSRTLQNSEFAPYCKFFPPWSIATPVIDNALSFDKKENVSSVVFQ-----QRFHELVQ 145
A + T + F P + AT L V++V + F V+
Sbjct: 247 AHYVVTAKLLGFTP-GELRSYLKGAT-GHSQGL-------VTAVAIAETDSWESFFVSVR 297
Query: 146 SKYQDFTLCFTDGS---KTANNTSCAYIIDKTLISSFVLNNVNSVYTSELIAVL-LCLKH 201
T+ F G + NTS + +++ + NN S ++++ L +
Sbjct: 298 KAI---TVLFFIGVRCYEAYPNTS----LPPSILEDSLENNEGV--PSPMLSISNLTQEQ 348
Query: 202 L--------KFLPKEKFVVISDSKSTLLALSN-PSN---TNPIVSLIHSCWTDLLCYGKQ 249
+ LP K V IS L N N + P SL YG
Sbjct: 349 VQDYVNKTNSHLPAGKQVEIS--------LVNGAKNLVVSGPPQSL----------YGLN 390
Query: 250 LAF--LWCPSHTGIQGNEAVDRAARNPSAS---LPPLKLCSPEDF-----KPFICKLIKD 299
L PS Q + + R S LP + SP F P + KD
Sbjct: 391 LTLRKAKAPSGLD-QSR--IPFSERKLKFSNRFLP---VASP--FHSHLLVPASDLINKD 442
Query: 300 LWQN--SWS----NIP---NSEAVDRAARNPSASLPPLKLCSPEDFKPFIMIGRTGSIKP 350
L +N S++ IP + D R S S+ ++ I R P
Sbjct: 443 LVKNNVSFNAKDIQIPVYDTFDGSD--LRVLSGSISE-RIVD--------CIIR----LP 487
Query: 351 VIGPWPSSDRQSRYEEVVICRMRIGHTRATH 381
V W ++ +ATH
Sbjct: 488 V--KWETTT----------------QFKATH 500
Score = 28.5 bits (63), Expect = 6.0
Identities = 7/17 (41%), Positives = 8/17 (47%), Gaps = 1/17 (5%)
Query: 408 TL-HGHIRASLPAPPAL 423
TL HG + L P A
Sbjct: 10 TLSHGSLEHVLLVPTAS 26
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV,
RNAse H, reverse transcriptase, transcription; 1.50A
{Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A
3v1r_A* 2hb5_A
Length = 165
Score = 55.2 bits (133), Expect = 2e-09
Identities = 35/134 (26%), Positives = 53/134 (39%), Gaps = 16/134 (11%)
Query: 150 DFTLCFTDGSKTANN----TSCAYIIDKTLISSFVLNNVNSVYTSELIAVLLCLKHLKFL 205
D+T +TDGS A + +I + L S +ELIA+ LK +
Sbjct: 23 DYTW-YTDGSSFLQEGQRRAGAAVTTETEVIWARALPAGTSAQRAELIALTQALKMAE-- 79
Query: 206 PKEKFVVISDSKSTLLALSNPSNTNPI--VSLIHSCWTDLLCYGKQLAFLWCPSHTG--- 260
+K V +DS+ S I + I + L K+L+ + CP H
Sbjct: 80 -GKKLNVYTDSRYAFATAHVHSEGREIKNKNEILAL-LKALFLPKRLSIIHCPGHQKGNS 137
Query: 261 --IQGNEAVDRAAR 272
+GN D+AAR
Sbjct: 138 AEARGNRMADQAAR 151
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO
enzyme, structural genomics, protein structure
initiative; NMR {Desulfitobacterium hafniense dcb-2}
PDB: 2kw4_A
Length = 147
Score = 46.6 bits (111), Expect = 2e-06
Identities = 23/137 (16%), Positives = 37/137 (27%), Gaps = 33/137 (24%)
Query: 155 FTDGSKTANNTSCAYII-----DKTLISSFVL---NNVNSVYTSELIAVLLCLKHLKFLP 206
+TDGS + AY + E+ A L +K
Sbjct: 10 YTDGSYVNGQYAWAYAFVKDGKVHYEDADVGKNPAAATMRNVAGEIAAALYAVKKAS-QL 68
Query: 207 KEKFVVISDSKSTLLALSNPSNTNPIVSLIHSCW----------TDLL-CYGKQLAFLWC 255
K ++ D I W L+ Y +F
Sbjct: 69 GVKIRILHDYAG-------------IAFWATGEWKAKNEFTQAYAKLMNQYRGIYSFEKV 115
Query: 256 PSHTGIQGNEAVDRAAR 272
+H+G + N+ VD A+
Sbjct: 116 KAHSGNEFNDYVDMKAK 132
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.1 bits (103), Expect = 9e-05
Identities = 39/229 (17%), Positives = 70/229 (30%), Gaps = 58/229 (25%)
Query: 23 SSPIP----SLL---VESGVPPL---QLRRSQLAMSYAVKIASCPANPTYSLLFPDNIDA 72
S+ IP SL+ V + +L + L P T S+
Sbjct: 384 SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ-------PKESTISIP------- 429
Query: 73 DIYPLNKPKPLCLRVRELALFSRTLQNSEFAPYCKFFPPWSIATPVIDN------ALSFD 126
IY K K + R++ + P F + P +D
Sbjct: 430 SIYLELKVK-----LENEYALHRSIVDHYNIPKT--FDSDDLIPPYLDQYFYSHIGHHLK 482
Query: 127 KKENVSSVVFQQRFHELVQSKYQDF-----TLCFTDGSKTANNTSCAYIIDKTLISSFVL 181
E+ +R L + + DF + + A+ + + ++
Sbjct: 483 NIEH------PERM-TLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYIC 535
Query: 182 NNVNSVYTSELIAVLLCLKHLKFLPK-EKFVVISDSKSTL-LALSNPSN 228
+N + Y + A+ L FLPK E+ ++ S L +AL
Sbjct: 536 DN-DPKYERLVNAI------LDFLPKIEENLICSKYTDLLRIALMAEDE 577
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI,
nonnucleoside inhibitor, AIDS, HIV, rilpivirine,
diarylpyrimidine, DAPY, DNA recombination; HET: T27;
1.80A {Human immunodeficiency virus 1} PDB: 3is9_A*
3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A
1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A*
2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Length = 557
Score = 40.1 bits (94), Expect = 0.001
Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 10/82 (12%)
Query: 190 SELIAVLLCLKHLKFLPKEKFVVISDSKSTL-LALSNPSNT-NPIVSLIHSCWTDLLCYG 247
+EL A+ L L+ + +++DS+ L + + P + + +V+ I + L
Sbjct: 479 TELQAIYLALQD----SGLEVNIVTDSQYALGIIQAQPDKSESELVNQI----IEQLIKK 530
Query: 248 KQLAFLWCPSHTGIQGNEAVDR 269
+++ W P+H GI GNE VD+
Sbjct: 531 EKVYLAWVPAHKGIGGNEQVDK 552
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo
sapiens} PDB: 2qk9_A 2qkk_A*
Length = 154
Score = 36.4 bits (85), Expect = 0.006
Identities = 23/104 (22%), Positives = 37/104 (35%), Gaps = 31/104 (29%)
Query: 191 ELIAVLLCLKHLKFLPKEKFVVISDSKSTLLALSNPSNTNPIVSLIHSCW------T--- 241
E+ A ++ K K V+ ++S T+ N I + + W T
Sbjct: 54 EIHAACKAIEQAKTQNINKLVLYTNSMFTI---------NGITNWVQG-WKKNGWKTSAG 103
Query: 242 ------------DLLCYGKQLAFLWCPSHTGIQGNEAVDRAARN 273
+ L G + ++ P H+G GNE DR AR
Sbjct: 104 KEVINKEDFVALERLTQGMDIQWMHVPGHSGFIGNEEADRLARE 147
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug
design, transferase; 2.35A {Human immunodeficiency virus
2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Length = 555
Score = 37.8 bits (88), Expect = 0.007
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 12/83 (14%)
Query: 190 SELIAVLLCLKHLKFLPKEKFVVISDSKSTL-LALSNPSNT-NPIVSLIHSCWTDLLCYG 247
+EL A + L K +I DS+ + + S P+ + + IV+ I
Sbjct: 476 AELEAFAMALTD----SGPKVNIIVDSQYVMGIVASQPTESESKIVNQIIE-----EMIK 526
Query: 248 KQLAFL-WCPSHTGIQGNEAVDR 269
K+ ++ W P+H GI GN+ VD
Sbjct: 527 KEAIYVAWVPAHKGIGGNQEVDH 549
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase,
hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} PDB:
3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Length = 150
Score = 33.3 bits (77), Expect = 0.053
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 242 DLLCYGKQLAFLWCPSHTGIQGNEAVDRAARN 273
+ L +++ W P+H GI GNE VD+
Sbjct: 112 EQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSA 143
>1b0z_A Protein (phosphoglucose isomerase); autocrinefactor, neuroleukin,
crystallography motility; 2.30A {Geobacillus
stearothermophilus} SCOP: c.80.1.2 PDB: 1c7q_A* 1c7r_A*
2pgi_A
Length = 445
Score = 30.4 bits (69), Expect = 1.2
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 7/42 (16%)
Query: 179 FVLNNVNSVYTSELIAVLLCLKHLKFLPKEKFVVISDSKSTL 220
F N++S Y S L+ V L+ VIS S +T
Sbjct: 110 FAGQNISSTYISHLLDV---LEGKDLS----INVISKSGTTT 144
>3sto_A Serine protease inhibitor; serpin fold, hydrolase inhibitor; 2.41A
{Schistosoma haematobium}
Length = 406
Score = 30.3 bits (69), Expect = 1.4
Identities = 13/114 (11%), Positives = 28/114 (24%), Gaps = 31/114 (27%)
Query: 108 FFPPWSIATPV----------------IDNALSFDKKENVSSVV-----FQQRFHELVQS 146
P I + I + + + + + EL S
Sbjct: 40 LTCPLGILFTLGILLGSGGAQGRTGYQIGKTMRLKSTSSSWNSSEAQQEMKSLYQELNNS 99
Query: 147 KYQDFTLCFTDGS---KTANNTSCAYIIDKT--LISSFVLNNVNSVYTSELIAV 195
+ T + + ++KT + F ++ + EL V
Sbjct: 100 LTSEKTFLNEKEENVVRIST----GIFVEKTYEVERRF-NESIANDSEGELKQV 148
>3f1s_A Protein Z-dependent protease inhibitor; PZ, ZPI, complex, serpin,
protease inhibitor, protease, GLYC secreted, serine
protease inhibitor, blood coagulation; HET: FLC NAG;
2.30A {Homo sapiens} PDB: 3h5c_A*
Length = 385
Score = 29.9 bits (68), Expect = 1.6
Identities = 13/106 (12%), Positives = 29/106 (27%), Gaps = 29/106 (27%)
Query: 108 FFPPWSIATPV--------------IDNALSFDKKENVSSVVFQQRFHELVQ--SKYQDF 151
F P+ ++ + I L + + F L + S+ +
Sbjct: 40 VFSPFGMSLAMTGLMLGATGPTETQIKRGLHLQALKPTKPGLLPSLFKGLRETLSRNLEL 99
Query: 152 TLCFTDGSKTANNTSCAYIIDKT--LISSFVLNNVNSVYTSELIAV 195
L + I K + +F N + +E + +
Sbjct: 100 GL------TQGS----FAFIHKDFDVKETF-FNLSKRYFDTECVPM 134
>2pef_A Serine protease inhibitor; serpin; 1.60A {Thermoanaerobacter
tengcongensis} PDB: 2vh4_A 2pee_A
Length = 373
Score = 29.9 bits (68), Expect = 1.9
Identities = 12/104 (11%), Positives = 25/104 (24%), Gaps = 28/104 (26%)
Query: 108 FFPPWSIATPV--------------IDNALSFDKKENVSSVVFQQRFHELVQSKYQDFTL 153
P S + ++ AL D + +L + L
Sbjct: 32 LISPLSAMLALAMTANGADNETLAQMEKALGKDISIEDLNKYLYTYMKKLPNEE--KSKL 89
Query: 154 CFTDGSKTANNTSCAYIIDKT--LISSFVLNNVNSVYTSELIAV 195
AN+ + + F L + Y +++
Sbjct: 90 ------TIANS---IWFKENDFMPSKDF-LQIIADYYKADIFKA 123
>3ne8_A N-acetylmuramoyl-L-alanine amidase; structural genomics, PSI-2,
protein structure initiative, MI center for structural
genomics, MCSG; 1.24A {Bartonella henselae}
Length = 234
Score = 29.1 bits (66), Expect = 2.2
Identities = 10/39 (25%), Positives = 22/39 (56%), Gaps = 5/39 (12%)
Query: 1 HILNKLN----PVHNSGIRIATGA-LRSSPIPSLLVESG 34
++++ L+ + N+ R A L++ +PS+L+E G
Sbjct: 154 NVVSNLSKSHINLINNPHRYADFQVLKAPDVPSVLIEIG 192
>3ndd_A Alpha-1-antitrypsin; serpin, hydrolase inhibitor; 1.50A {Homo
sapiens} PDB: 3ndf_A 7api_A* 8api_A* 9api_A* 1d5s_A
1ezx_A 3t1p_A 2d26_A 1qmb_A
Length = 343
Score = 29.5 bits (67), Expect = 2.5
Identities = 26/107 (24%), Positives = 36/107 (33%), Gaps = 31/107 (28%)
Query: 108 FFPPWSIATPV--------------IDNALSFDKKENVSSVV---FQQRFHELVQSKYQD 150
FF P SIAT I L+F+ E + + FQ+ L Q
Sbjct: 36 FFSPVSIATAFAMLSLGTKADTHDEILEGLNFNLTEIPEAQIHEGFQELLRTLNQPD-SQ 94
Query: 151 FTLCFTDGSKTANNTSCAYIIDKTL--ISSFVLNNVNSVYTSELIAV 195
L T N + + L + F L +V +Y SE V
Sbjct: 95 LQL------TTGN----GLFLSEGLKLVDKF-LEDVKKLYHSEAFTV 130
>3ne4_A Alpha-1-antitrypsin; serpin, LUNG disease, liver disease,
polymerisation, hydrolase inhibitor; 1.81A {Homo
sapiens} PDB: 1qlp_A 2qug_A 3cwl_A 3cwm_A* 1psi_A 3drm_A
1kct_A 3dru_A 1hp7_A 1iz2_A* 1oph_A 1oo8_A 1atu_A 1d5s_B
1qmb_B
Length = 424
Score = 28.8 bits (65), Expect = 3.7
Identities = 26/107 (24%), Positives = 36/107 (33%), Gaps = 31/107 (28%)
Query: 108 FFPPWSIATPV--------------IDNALSFDKKENVSSVV---FQQRFHELVQSKYQD 150
FF P SIAT I L+F+ E + + FQ+ L Q
Sbjct: 81 FFSPVSIATAFAMLSLGTKADTHDEILEGLNFNLTEIPEAQIHEGFQELLRTLNQPD-SQ 139
Query: 151 FTLCFTDGSKTANNTSCAYIIDKTL--ISSFVLNNVNSVYTSELIAV 195
L T N + + L + F L +V +Y SE V
Sbjct: 140 LQL------TTGN----GLFLSEGLKLVDKF-LEDVKKLYHSEAFTV 175
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus
thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Length = 166
Score = 27.9 bits (63), Expect = 4.1
Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Query: 242 DLLCYGKQLAFLWCPSHTGIQGNEAVDRAARN--PSASLPPLKLCSPEDFKP 291
L ++ F + HTG NE VDR AR S + P +P F
Sbjct: 113 LLAMAPHRVRFHFVKGHTGHPENERVDREARRQAQSQAKTPCPPRAPTLFHE 164
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability,
hydrogen exchange, cooperativity, hydrolase; 1.30A
{Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A
1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A
1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A
3aa5_X 1rbv_A ...
Length = 155
Score = 27.9 bits (63), Expect = 4.4
Identities = 10/32 (31%), Positives = 12/32 (37%)
Query: 242 DLLCYGKQLAFLWCPSHTGIQGNEAVDRAARN 273
D Q+ + W H G NE D AR
Sbjct: 108 DAALGQHQIKWEWVKGHAGHPENERADELARA 139
>1mrj_A Alpha-trichosanthin; ribosome-inactivating protein; HET: ADN; 1.60A
{Trichosanthes kirilowii} SCOP: d.165.1.1 PDB: 1mrk_A*
1qd2_A* 1tcs_A* 1j4g_A 1gis_A* 1giu_A* 2jdl_A 2jjr_A*
1nli_A* 2vs6_A 1bry_Y
Length = 247
Score = 28.5 bits (63), Expect = 4.4
Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 301 WQNSWSNIPNSEAVDRAARNPSASLPPLKLCSPEDFKPFIMIGRTGSIKPVIG 353
+NSWS + S+ + A+ N P+ L + ++ + I G + I
Sbjct: 188 LENSWSAL--SKQIQIASTNNGQFESPVVLINAQNQRVTITNVDAGVVTSNIA 238
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease,
hydrolase, magnesium, metal-binding; 1.60A
{Chlorobaculum tepidum}
Length = 146
Score = 27.5 bits (62), Expect = 4.8
Identities = 8/35 (22%), Positives = 13/35 (37%), Gaps = 2/35 (5%)
Query: 240 WTDL--LCYGKQLAFLWCPSHTGIQGNEAVDRAAR 272
W ++ L ++ F H+ N D AR
Sbjct: 105 WQEILKLTTLHRVTFHKVKGHSDNPYNSRADELAR 139
>1lj5_A Plasminogen activator inhibitor-1; beta-barrell, blood clotting;
1.80A {Homo sapiens} SCOP: e.1.1.1 PDB: 1dvn_A 1c5g_A
1a7c_A* 3q02_A 3q03_A 3r4l_A* 1oc0_A 1b3k_A 3pb1_I
1dvm_A 3eox_A 3cvm_A 1db2_A 9pai_A 3lw2_A 9pai_B
Length = 379
Score = 28.3 bits (64), Expect = 6.1
Identities = 14/104 (13%), Positives = 34/104 (32%), Gaps = 28/104 (26%)
Query: 108 FFPPWSIATPV--------------IDNALSFDKKENVSSVVFQQRFHELVQSKYQDFTL 153
F P+ +A+ + I A+ F + + + + EL+ +
Sbjct: 33 VFSPYGVASVLAMLQLTTGGETQQQIQAAMGFKIDDKGMAPALRHLYKELMGPW-NKDEI 91
Query: 154 CFTDGSKTANNTSCAYIIDKT--LISSFVLNNVNSVYTSELIAV 195
T + A + + L+ F + + ++ S + V
Sbjct: 92 ------STTD----AIFVQRDLKLVQGF-MPHFFRLFRSTVKQV 124
>1yxa_A Serine (OR cysteine) proteinase inhibitor, clade 3N; serpin,
antichymotrypsin, protease inhibitor, reactive centr
plasma, hydrolase inhibitor; 2.10A {Mus musculus}
Length = 398
Score = 28.0 bits (63), Expect = 6.3
Identities = 19/107 (17%), Positives = 32/107 (29%), Gaps = 31/107 (28%)
Query: 108 FFPPWSIATPV--------------IDNALSFDKKENVSSVV---FQQRFHELVQSKYQD 150
F P SI+ + I L F+ E + + F L Q K
Sbjct: 52 VFSPLSISAALALVSLGAKGNTLEEILEGLKFNLTETSEADIHQGFGHLLQRLNQPK-DQ 110
Query: 151 FTLCFTDGSKTANNTSCAYIIDKTL--ISSFVLNNVNSVYTSELIAV 195
+ T + A I+K ++ F ++Y +E
Sbjct: 111 VQI------STGS----ALFIEKRQQILTEF-QEKAKTLYQAEAFTA 146
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.135 0.418
Gapped
Lambda K H
0.267 0.0742 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,690,702
Number of extensions: 383610
Number of successful extensions: 606
Number of sequences better than 10.0: 1
Number of HSP's gapped: 603
Number of HSP's successfully gapped: 25
Length of query: 446
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 349
Effective length of database: 3,993,456
Effective search space: 1393716144
Effective search space used: 1393716144
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.5 bits)