BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy5485
         (384 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1RL1|A Chain A, Solution Structure Of Human Sgt1 Cs Domain
          Length = 114

 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 52/97 (53%), Gaps = 2/97 (2%)

Query: 201 IRHNWYQTEKQVVVDALIKQAKAETTQVNIDQNSVDIVVTLDPSSSTQHRLHLNLYRPID 260
           I+++WYQTE QVV+  +IK  +     V   +  +  +V L   S   + L L L  PI 
Sbjct: 10  IKYDWYQTESQVVITLMIKNVQKNDVNVEFSEKELSALVKL--PSGEDYNLKLELLHPII 67

Query: 261 PTTSSFRILGTKIEVKLAKTSDERWSDLEAKEETKAP 297
           P  S+F++L TKIE+KL K    RW  LE + +   P
Sbjct: 68  PEQSTFKVLSTKIEIKLKKPEAVRWEKLEGQGDVPTP 104


>pdb|2JKI|S Chain S, Complex Of Hsp90 N-terminal And Sgt1 Cs Domain
 pdb|2JKI|T Chain T, Complex Of Hsp90 N-terminal And Sgt1 Cs Domain
 pdb|2JKI|U Chain U, Complex Of Hsp90 N-terminal And Sgt1 Cs Domain
          Length = 90

 Score = 45.8 bits (107), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 2/88 (2%)

Query: 202 RHNWYQTEKQVVVDALIKQAKAETTQVNIDQNSVDIVVTLDPSSSTQHRLHLNLYRPIDP 261
           RH +YQ  ++VVV    K    +   VNID     + V ++      + L   L+  I P
Sbjct: 3   RHEYYQKPEEVVVTVFAKGIPKQ--NVNIDFGEQILSVVIEVPGEDAYYLQPRLFGKIIP 60

Query: 262 TTSSFRILGTKIEVKLAKTSDERWSDLE 289
               + +L TKIE+ LAK     W+ LE
Sbjct: 61  DKCKYEVLSTKIEICLAKADIITWASLE 88


>pdb|2XCM|C Chain C, Complex Of Hsp90 N-Terminal, Sgt1 Cs And Rar1 Chord2
           Domain
 pdb|2XCM|D Chain D, Complex Of Hsp90 N-Terminal, Sgt1 Cs And Rar1 Chord2
           Domain
          Length = 92

 Score = 45.8 bits (107), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 2/88 (2%)

Query: 202 RHNWYQTEKQVVVDALIKQAKAETTQVNIDQNSVDIVVTLDPSSSTQHRLHLNLYRPIDP 261
           RH +YQ  ++VVV    K    +   VNID     + V ++      + L   L+  I P
Sbjct: 4   RHEYYQKPEEVVVTVFAKGIPKQ--NVNIDFGEQILSVVIEVPGEDAYYLQPRLFGKIIP 61

Query: 262 TTSSFRILGTKIEVKLAKTSDERWSDLE 289
               + +L TKIE+ LAK     W+ LE
Sbjct: 62  DKCKYEVLSTKIEICLAKADIITWASLE 89


>pdb|1WH0|A Chain A, Solution Structure Of The Cs Domain Of Human Usp19
          Length = 134

 Score = 34.3 bits (77), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 10/89 (11%)

Query: 212 VVVDALIKQAKAETTQVNIDQNSVDIV--------VTLDPSSS--TQHRLHLNLYRPIDP 261
           VVV   +K+   +T++V   +    ++        + L P     T  R  + L   I+P
Sbjct: 32  VVVHVYVKEICRDTSRVLFREQDFTLIFQTRDGNFLRLHPGCGPHTTFRWQVKLRNLIEP 91

Query: 262 TTSSFRILGTKIEVKLAKTSDERWSDLEA 290
              +F    ++I++ L K   +RW  LEA
Sbjct: 92  EQCTFCFTASRIDICLRKRQSQRWGGLEA 120


>pdb|2JQM|A Chain A, Yellow Fever Envelope Protein Domain Iii Nmr Structure
           (S288-K398)
 pdb|2JV6|A Chain A, Yf Ed3 Protein Nmr Structure
          Length = 112

 Score = 28.5 bits (62), Expect = 7.0,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 3/42 (7%)

Query: 338 SDEVRKAMNKSFLESGGTVLSTNWDEVKRSTVDIKPPEGLEY 379
           +D++  A+NK  L +   + STN DEV    +++ PP G  Y
Sbjct: 51  ADDLTAAINKGILVTVNPIASTNDDEV---LIEVNPPFGDSY 89


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.313    0.129    0.369 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,827,426
Number of Sequences: 62578
Number of extensions: 420995
Number of successful extensions: 1087
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1078
Number of HSP's gapped (non-prelim): 10
length of query: 384
length of database: 14,973,337
effective HSP length: 101
effective length of query: 283
effective length of database: 8,652,959
effective search space: 2448787397
effective search space used: 2448787397
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)