Query psy5485
Match_columns 384
No_of_seqs 229 out of 896
Neff 4.4
Searched_HMMs 46136
Date Fri Aug 16 18:43:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5485.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5485hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03088 SGT1, suppressor of 100.0 3.1E-60 6.7E-65 469.0 19.3 187 196-384 152-356 (356)
2 KOG1309|consensus 100.0 5.2E-58 1.1E-62 417.2 15.2 182 199-382 2-196 (196)
3 COG5091 SGT1 Suppressor of G2 100.0 4.5E-40 9.9E-45 316.7 10.0 187 194-382 170-368 (368)
4 PF05002 SGS: SGS domain ; In 100.0 5E-37 1.1E-41 249.6 1.9 77 306-382 2-82 (82)
5 KOG3260|consensus 99.9 8.5E-24 1.8E-28 193.9 9.8 138 202-355 76-215 (224)
6 cd00237 p23 p23 binds heat sho 99.9 2.4E-21 5.2E-26 164.0 12.0 104 201-314 2-106 (106)
7 cd06488 p23_melusin_like p23_l 99.8 7E-21 1.5E-25 154.5 10.9 87 201-289 1-87 (87)
8 cd06465 p23_hB-ind1_like p23_l 99.8 3E-20 6.5E-25 155.5 12.1 105 202-315 2-107 (108)
9 cd06489 p23_CS_hSgt1_like p23_ 99.8 1.3E-19 2.8E-24 145.1 9.6 84 204-289 1-84 (84)
10 cd06468 p23_CacyBP p23_like do 99.7 1.1E-17 2.4E-22 135.3 11.4 87 201-289 2-92 (92)
11 KOG3158|consensus 99.7 1.5E-18 3.2E-23 158.2 6.4 110 201-319 8-118 (180)
12 cd06466 p23_CS_SGT1_like p23_l 99.7 7.9E-18 1.7E-22 132.9 9.6 84 204-289 1-84 (84)
13 cd06490 p23_NCB5OR p23_like do 99.7 8.1E-16 1.8E-20 125.4 10.4 83 203-289 1-87 (87)
14 PF04969 CS: CS domain; Inter 99.6 2.3E-15 5E-20 115.9 11.6 77 201-279 1-79 (79)
15 cd06463 p23_like Proteins cont 99.6 3.4E-15 7.4E-20 115.4 10.2 83 205-289 1-84 (84)
16 cd06469 p23_DYX1C1_like p23_li 99.6 3.4E-15 7.3E-20 116.8 10.0 78 205-289 1-78 (78)
17 cd06493 p23_NUDCD1_like p23_NU 99.6 2.2E-14 4.8E-19 115.7 10.0 82 203-289 1-85 (85)
18 cd06467 p23_NUDC_like p23_like 99.6 2.4E-14 5.2E-19 113.7 9.8 81 203-288 1-84 (85)
19 cd06494 p23_NUDCD2_like p23-li 99.3 7.6E-12 1.6E-16 104.0 10.0 83 200-288 5-92 (93)
20 KOG1667|consensus 99.3 2.9E-12 6.3E-17 123.5 8.3 93 199-292 213-305 (320)
21 cd06492 p23_mNUDC_like p23-lik 99.2 7.3E-11 1.6E-15 96.7 9.6 82 203-289 1-87 (87)
22 cd06495 p23_NUDCD3_like p23-li 99.2 2.6E-10 5.7E-15 96.5 11.3 90 201-292 5-97 (102)
23 cd00298 ACD_sHsps_p23-like Thi 99.1 7.4E-10 1.6E-14 83.0 8.2 75 205-279 1-80 (80)
24 KOG2265|consensus 98.7 1.7E-07 3.7E-12 86.4 10.5 89 199-292 17-109 (179)
25 COG0071 IbpA Molecular chapero 98.1 4E-05 8.7E-10 67.8 10.7 83 200-282 40-135 (146)
26 cd06472 ACD_ScHsp26_like Alpha 98.0 3.7E-05 8E-10 62.7 9.3 78 202-279 1-92 (92)
27 cd06471 ACD_LpsHSP_like Group 97.8 0.00018 3.8E-09 58.5 9.1 77 202-279 2-93 (93)
28 cd06464 ACD_sHsps-like Alpha-c 97.6 0.00034 7.3E-09 54.7 8.5 76 204-279 1-88 (88)
29 PF00011 HSP20: Hsp20/alpha cr 97.6 0.00047 1E-08 56.4 9.6 79 204-282 1-90 (102)
30 KOG4379|consensus 97.1 0.00095 2.1E-08 69.7 6.3 85 201-291 290-377 (596)
31 cd06475 ACD_HspB1_like Alpha c 97.0 0.0043 9.4E-08 50.7 8.7 75 204-278 4-85 (86)
32 cd06497 ACD_alphaA-crystallin_ 97.0 0.0039 8.5E-08 51.0 8.3 75 205-279 5-86 (86)
33 cd06479 ACD_HspB7_like Alpha c 97.0 0.0044 9.5E-08 50.5 8.2 74 206-279 4-81 (81)
34 cd06526 metazoan_ACD Alpha-cry 97.0 0.0038 8.2E-08 50.1 7.6 70 210-279 7-83 (83)
35 PRK10743 heat shock protein Ib 96.9 0.01 2.2E-07 52.9 10.6 78 201-280 35-124 (137)
36 cd06470 ACD_IbpA-B_like Alpha- 96.9 0.012 2.7E-07 48.0 10.0 75 203-279 3-90 (90)
37 cd06498 ACD_alphaB-crystallin_ 96.9 0.0072 1.6E-07 49.3 8.5 74 207-280 4-84 (84)
38 cd06478 ACD_HspB4-5-6 Alpha-cr 96.7 0.01 2.2E-07 48.1 8.0 73 207-279 4-83 (83)
39 PRK11597 heat shock chaperone 96.6 0.019 4.1E-07 51.6 10.1 78 201-280 33-122 (142)
40 cd06476 ACD_HspB2_like Alpha c 96.1 0.026 5.7E-07 46.0 7.5 72 208-279 5-83 (83)
41 cd06481 ACD_HspB9_like Alpha c 95.7 0.051 1.1E-06 44.5 7.6 71 208-278 5-86 (87)
42 cd06482 ACD_HspB10 Alpha cryst 94.7 0.14 3E-06 42.4 7.2 68 208-275 6-83 (87)
43 cd06477 ACD_HspB3_Like Alpha c 94.7 0.24 5.2E-06 40.6 8.4 71 207-277 4-81 (83)
44 PF08190 PIH1: pre-RNA process 94.4 0.47 1E-05 46.3 11.4 65 209-278 260-327 (328)
45 PF05455 GvpH: GvpH; InterPro 92.8 1.6 3.5E-05 41.0 11.3 79 199-282 90-170 (177)
46 cd06480 ACD_HspB8_like Alpha-c 88.8 2.5 5.4E-05 35.4 7.7 70 208-277 13-89 (91)
47 KOG3591|consensus 46.5 1.2E+02 0.0025 28.3 8.2 74 208-281 70-150 (173)
48 KOG0710|consensus 41.6 54 0.0012 30.8 5.3 82 201-282 83-182 (196)
49 PF14098 SSPI: Small, acid-sol 37.1 39 0.00085 27.1 3.0 28 324-351 36-63 (65)
50 KOG3493|consensus 33.5 16 0.00035 29.5 0.4 26 101-126 2-33 (73)
51 PF06543 Lac_bphage_repr: Lact 30.2 32 0.00069 26.2 1.4 10 305-314 17-26 (49)
52 TIGR03092 SASP_sspI small, aci 29.9 54 0.0012 26.4 2.7 28 324-351 35-62 (65)
53 KOG3480|consensus 26.2 18 0.00039 30.6 -0.5 23 98-124 49-72 (90)
54 PRK02955 small acid-soluble sp 24.7 70 0.0015 25.9 2.6 27 324-350 38-64 (68)
55 PF09829 DUF2057: Uncharacteri 24.3 53 0.0011 30.2 2.1 24 324-347 165-188 (189)
56 PF04818 CTD_bind: RNA polymer 23.7 97 0.0021 23.4 3.1 24 325-348 30-53 (64)
57 PF02985 HEAT: HEAT repeat; I 22.5 1.8E+02 0.0039 18.9 3.9 24 327-350 2-25 (31)
No 1
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=100.00 E-value=3.1e-60 Score=468.95 Aligned_cols=187 Identities=38% Similarity=0.711 Sum_probs=168.7
Q ss_pred CCCCCCcEEEEecCCEEEEEEEeCCCCCCCcEEEEeccEEEEEEEeCCCCCCeeEEeeccCCCcCCCCceEEEeCceEEE
Q psy5485 196 PTVQNIRHNWYQTEKQVVVDALIKQAKAETTQVNIDQNSVDIVVTLDPSSSTQHRLHLNLYRPIDPTTSSFRILGTKIEV 275 (384)
Q Consensus 196 ~~~~k~RyDWyQT~d~VtItI~lKgV~kEdVkVefte~sLsVsi~~~~a~gk~Y~l~IeLf~eIdPeeSk~KVt~~KIEI 275 (384)
+..+++||+|||+.++|+|+||++|++++++.|+|++++|+|++..++ +..|.+.++||++|+|++|+++|.++||||
T Consensus 152 ~~~~~~r~dWyQs~~~V~i~i~~k~~~~~~~~v~~~~~~l~v~~~~~~--~~~y~~~~~L~~~I~p~~s~~~v~~~Kiei 229 (356)
T PLN03088 152 PSKPKYRHEFYQKPEEVVVTVFAKGVPAENVNVDFGEQILSVVIEVPG--EDAYHLQPRLFGKIIPDKCKYEVLSTKIEI 229 (356)
T ss_pred CCCCccccceeecCCEEEEEEEecCCChHHcEEEeecCEEEEEEecCC--CcceeecccccccccccccEEEEecceEEE
Confidence 345679999999999999999999999999999999999999987764 678999999999999999999999999999
Q ss_pred EEEcCCCCCCCcccccccc-------------cCCCCCCC-CCCCCcchhhhhh----hhhhhhchHHHHHHHHHHhCCC
Q psy5485 276 KLAKTSDERWSDLEAKEET-------------KAPSAPKT-PYKRDWDKVAQQI----EDEKKEGEAALNELFQKIYGEG 337 (384)
Q Consensus 276 ~LkKke~~~WprLek~e~~-------------~kp~yPsS-k~kkDWDK~~dEd----EdEe~egdaaLn~lFKkIY~~g 337 (384)
+|+|+++.+|++|+..+.. ..|+||+| +.++|||||+.|+ ++|++||+++||+||||||++|
T Consensus 230 ~l~K~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~dWdk~~~~~~~e~~~e~~~g~~~~~~~f~~iY~~~ 309 (356)
T PLN03088 230 RLAKAEPITWASLEYGKGPAVLPKPNVSSEVSQRPAYPSSKKKKDDWDKLEAEVKKEEKDEKLDGDAALNKFFREIYQNA 309 (356)
T ss_pred EEecCCCCCccccccCCccccccCCCCCcCcccCCCCCCCCCCCCChhhhhhhhhhhhhccccccchHHHHHHHHHHhcC
Confidence 9999999999999975432 12579988 5568999998664 2334578999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCeecccCcccccCceeecCCCCCccccccCC
Q psy5485 338 SDEVRKAMNKSFLESGGTVLSTNWDEVKRSTVDIKPPEGLEYKKWDS 384 (384)
Q Consensus 338 DDDtKRAMmKSf~ESnGTvLSTNW~EVgkk~ve~~pP~GmE~Kkwe~ 384 (384)
||||||||||||+|||||||||||+|||+++||++||+|||+||||+
T Consensus 310 d~d~rram~KSf~eS~gt~lstnw~~v~~~~~e~~pp~g~e~k~~~~ 356 (356)
T PLN03088 310 DEDTRRAMMKSFVESNGTVLSTNWKEVGSKKIEGSPPDGMELKKWEY 356 (356)
T ss_pred CHHHHHHHHHHhhhcCCeEEeccHHHhcCCccccCCCCCCccccCCC
Confidence 99999999999999999999999999999999999999999999985
No 2
>KOG1309|consensus
Probab=100.00 E-value=5.2e-58 Score=417.15 Aligned_cols=182 Identities=46% Similarity=0.804 Sum_probs=165.3
Q ss_pred CCCcEEEEecCCEEEEEEEeCCCCCCCcEEEEeccEEEEEEEeCCCCCCeeEEeeccCCCcCCCCceEEEeCceEEEEEE
Q psy5485 199 QNIRHNWYQTEKQVVVDALIKQAKAETTQVNIDQNSVDIVVTLDPSSSTQHRLHLNLYRPIDPTTSSFRILGTKIEVKLA 278 (384)
Q Consensus 199 ~k~RyDWyQT~d~VtItI~lKgV~kEdVkVefte~sLsVsi~~~~a~gk~Y~l~IeLf~eIdPeeSk~KVt~~KIEI~Lk 278 (384)
+++||||||+.+.|+|+||.++|++++|.|+|+++.|++.+..++ |..|.+.+.||++|+|+.|+|++.+.||||+|.
T Consensus 2 ~k~r~DwyQt~~~vvIti~~k~v~~~~v~v~~s~~~l~~~~~~~~--g~~~~l~~~L~~~I~pe~~s~k~~stKVEI~L~ 79 (196)
T KOG1309|consen 2 MKIRHDWYQTETSVVITIFAKNVPKEDVNVEISENTLSIVIQLPS--GSEYNLQLKLYHEIIPEKSSFKVFSTKVEITLA 79 (196)
T ss_pred CcccceeecCCceEEEEEEecCCCccceeEEeecceEEEEEecCC--chhhhhhHHhcccccccceeeEeeeeeEEEEec
Confidence 579999999999999999999999999999999999999998875 789999999999999999999999999999999
Q ss_pred cCCCCCCCccccccccc----------CCCCCCCCCCCCcchhhhhhhhhhhhc---hHHHHHHHHHHhCCCCHHHHHHH
Q psy5485 279 KTSDERWSDLEAKEETK----------APSAPKTPYKRDWDKVAQQIEDEKKEG---EAALNELFQKIYGEGSDEVRKAM 345 (384)
Q Consensus 279 Kke~~~WprLek~e~~~----------kp~yPsSk~kkDWDK~~dEdEdEe~eg---daaLn~lFKkIY~~gDDDtKRAM 345 (384)
|.+...|..|++..... +.+||+++.++|||+++.|++.||.++ +|+||+|||+||++|||||||||
T Consensus 80 K~~~irW~~Le~g~~~~~~~~~~vs~~~s~~Pssk~~kdWdkl~~e~~~eEe~e~l~dAAl~~lF~kiY~~addDvrRAM 159 (196)
T KOG1309|consen 80 KAEIIRWESLEKGKGSAVAPKPNVSSTASSYPSSKPAKDWDKLEKEEKKEEEDEKLEDAALNKLFQKIYSDADDDVRRAM 159 (196)
T ss_pred cccchhhhhhhcccCcccccccccccccccCCCCCcccCHHHHHHHhhhhhhccchhHHHHHHHHHHHHhcCCHHHHHHH
Confidence 98899999999522111 125898877999999998874433322 89999999999999999999999
Q ss_pred HHHHHHcCCeecccCcccccCceeecCCCCCcccccc
Q psy5485 346 NKSFLESGGTVLSTNWDEVKRSTVDIKPPEGLEYKKW 382 (384)
Q Consensus 346 mKSf~ESnGTvLSTNW~EVgkk~ve~~pP~GmE~Kkw 382 (384)
||||.|||||||||||+|||+++||++||+|||+|+|
T Consensus 160 ~KSf~ESnGTvLSTnW~eVg~kkve~~PP~gmE~Kk~ 196 (196)
T KOG1309|consen 160 MKSFSESNGTVLSTNWSEVGKKKVETKPPDGMEPKKW 196 (196)
T ss_pred HhhhhhcCCeEEeccHHHhccceeeecCCCCCCcCcC
Confidence 9999999999999999999999999999999999999
No 3
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=100.00 E-value=4.5e-40 Score=316.67 Aligned_cols=187 Identities=27% Similarity=0.527 Sum_probs=158.7
Q ss_pred CCCCCCCCcEEEEecCCEEEEEEEeCCCCCCCcEEEEeccEEEEEEEeCCCCCCeeEEeeccCCCcCCCCceEEEeCceE
Q psy5485 194 PTPTVQNIRHNWYQTEKQVVVDALIKQAKAETTQVNIDQNSVDIVVTLDPSSSTQHRLHLNLYRPIDPTTSSFRILGTKI 273 (384)
Q Consensus 194 ~~~~~~k~RyDWyQT~d~VtItI~lKgV~kEdVkVefte~sLsVsi~~~~a~gk~Y~l~IeLf~eIdPeeSk~KVt~~KI 273 (384)
+-.+...++|+|.||...+.|.||.+.+..++|.+-++++.|+|++.... .+-.+.+.+.||++|+|+.+++++.+.++
T Consensus 170 qE~~~~~i~yd~s~Ts~t~~ifiy~~pv~deqVs~~~e~NTL~I~~q~~~-~~~~~~~~~~Ly~ev~P~~~s~k~fsK~~ 248 (368)
T COG5091 170 QESPKMEIAYDFSETSDTAIIFIYRPPVGDEQVSPVLEGNTLSISYQPRR-LRLWNDITISLYKEVYPDIRSIKSFSKRV 248 (368)
T ss_pred ccCccceeeeeccccceeEEEEEecCCCCccccceeecCCcceeeeeccc-cchHHHhhhhhhhhcCcchhhhhhcchhh
Confidence 45556778899999999999999988888889999999999999987654 23345566799999999999999999999
Q ss_pred EEEEEcCCCCCCCccccccccc-----------CCCCCCC-CCCCCcchhhhhhhhhhhhchHHHHHHHHHHhCCCCHHH
Q psy5485 274 EVKLAKTSDERWSDLEAKEETK-----------APSAPKT-PYKRDWDKVAQQIEDEKKEGEAALNELFQKIYGEGSDEV 341 (384)
Q Consensus 274 EI~LkKke~~~WprLek~e~~~-----------kp~yPsS-k~kkDWDK~~dEdEdEe~egdaaLn~lFKkIY~~gDDDt 341 (384)
|+.|+|.+..+|..|.+..... ..+-|++ +.+.||+++..+++-||++|. .+.+|||+||++|||||
T Consensus 249 e~~l~KV~~v~W~~l~~~pa~~S~~l~~e~~N~~SAt~~s~~k~~Dw~~l~~~~~~dEe~ps-~~dslFqklY~~addDt 327 (368)
T COG5091 249 EVHLRKVEMVRWGGLNGRPADESSRLSDEGKNSDSATPKSSKKQDDWKELMVEDSGDEENPS-VMDSLFQKLYQRADDDT 327 (368)
T ss_pred eehhhhhhhhhhcccccCccccccccccccccccccCCccccccccHHHhhhhhcccccCch-HHHHHHHHHHhcCCchH
Confidence 9999999999999998753211 1133554 678899999988766555443 36679999999999999
Q ss_pred HHHHHHHHHHcCCeecccCcccccCceeecCCCCCcccccc
Q psy5485 342 RKAMNKSFLESGGTVLSTNWDEVKRSTVDIKPPEGLEYKKW 382 (384)
Q Consensus 342 KRAMmKSf~ESnGTvLSTNW~EVgkk~ve~~pP~GmE~Kkw 382 (384)
||||||||+|||||+|||||++|++++|++.||+|||.|+|
T Consensus 328 rRAMmKSf~ESnGTaLSTdW~dVkskt~~t~pPeGMEPK~~ 368 (368)
T COG5091 328 RRAMMKSFYESNGTALSTDWDDVKSKTITTEPPEGMEPKHW 368 (368)
T ss_pred HHHHHHHHhhcCCceecccHHHhhcCceecCCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999
No 4
>PF05002 SGS: SGS domain ; InterPro: IPR007699 This domain was thought to be unique to the SGT1-like proteins, but is also found in calcyclin binding proteins. Sgt1p is a highly conserved eukaryotic protein that is required for both SCF (Skp1p/Cdc53p-Cullin-F-box)-mediated ubiquitination and kinetochore function in yeast and also plays a role in the cAMP pathway. Calcyclin (S100A6) is a member of the S100A family of calcium binding proteins and appears to play a role in cell proliferation [].; PDB: 1X5M_A 2JTT_D.
Probab=100.00 E-value=5e-37 Score=249.63 Aligned_cols=77 Identities=55% Similarity=1.027 Sum_probs=30.5
Q ss_pred CCcchhhh----hhhhhhhhchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCeecccCcccccCceeecCCCCCccccc
Q psy5485 306 RDWDKVAQ----QIEDEKKEGEAALNELFQKIYGEGSDEVRKAMNKSFLESGGTVLSTNWDEVKRSTVDIKPPEGLEYKK 381 (384)
Q Consensus 306 kDWDK~~d----EdEdEe~egdaaLn~lFKkIY~~gDDDtKRAMmKSf~ESnGTvLSTNW~EVgkk~ve~~pP~GmE~Kk 381 (384)
+||+++.. +.++++.+|+++||+|||+||++|||||||||||||+|||||||||||+|||+++|+++||+|||+|+
T Consensus 2 ~~W~~l~~~~~~~~~~d~~d~~a~lm~lfkkiY~~gDDe~KRam~KSf~ES~GT~LSTnW~eV~~~~~~~~pp~g~e~k~ 81 (82)
T PF05002_consen 2 KNWDKLTKKKEKEEEDDEEDPEASLMNLFKKIYDNGDDEMKRAMMKSFTESQGTVLSTNWDEVGKKKVEPSPPDGMEWKK 81 (82)
T ss_dssp ---SSSBHH--------------SHHHHHHHHHTTS-SCHHHHHHHHHHCT-----------------------------
T ss_pred CChHHccccccccccccccCchHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCcccccchhccchhhhcccccccccccc
Confidence 57888873 23445567888999999999999999999999999999999999999999999999999999999999
Q ss_pred c
Q psy5485 382 W 382 (384)
Q Consensus 382 w 382 (384)
|
T Consensus 82 ~ 82 (82)
T PF05002_consen 82 W 82 (82)
T ss_dssp -
T ss_pred C
Confidence 9
No 5
>KOG3260|consensus
Probab=99.90 E-value=8.5e-24 Score=193.93 Aligned_cols=138 Identities=24% Similarity=0.393 Sum_probs=118.4
Q ss_pred cEEEEecCCEEEEEEEeCCCCCCCcEEEEeccEEEEEEEeCCCCCCeeEEee-ccCCCcCCCCceEEEeCceEEEEEEcC
Q psy5485 202 RHNWYQTEKQVVVDALIKQAKAETTQVNIDQNSVDIVVTLDPSSSTQHRLHL-NLYRPIDPTTSSFRILGTKIEVKLAKT 280 (384)
Q Consensus 202 RyDWyQT~d~VtItI~lKgV~kEdVkVefte~sLsVsi~~~~a~gk~Y~l~I-eLf~eIdPeeSk~KVt~~KIEI~LkKk 280 (384)
.|.|.|+.++|.++|.+.||+.++|+|+|++.+|.+.+.... |++|.+.+ +|+++|.|+.|+.+|++..|.|.++|.
T Consensus 76 ~ygWDQs~kfVK~yItL~GV~eenVqv~ftp~Sldl~v~dlq--GK~y~~~vnnLlk~I~vEks~~kvKtd~v~I~~kkV 153 (224)
T KOG3260|consen 76 LYGWDQSNKFVKMYITLEGVDEENVQVEFTPMSLDLKVHDLQ--GKNYRMIVNNLLKPISVEKSSKKVKTDTVLILCKKV 153 (224)
T ss_pred hcCccccCCeeEEEEEeecccccceeEEecccceeeeeeecC--CcceeeehhhhccccChhhcccccccceEEEeehhh
Confidence 499999999999999999999999999999999999998775 89999999 999999999999999999999999999
Q ss_pred CCCCCCcccccccccCC-CCCCCCCCCCcchhhhhhhhhhhhchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCe
Q psy5485 281 SDERWSDLEAKEETKAP-SAPKTPYKRDWDKVAQQIEDEKKEGEAALNELFQKIYGEGSDEVRKAMNKSFLESGGT 355 (384)
Q Consensus 281 e~~~WprLek~e~~~kp-~yPsSk~kkDWDK~~dEdEdEe~egdaaLn~lFKkIY~~gDDDtKRAMmKSf~ESnGT 355 (384)
+..+|.-|+.-++.-+. .-|+ .+.| .||.++||++|++||.+|||||||+|+|+|+||+..
T Consensus 154 e~~rwd~Lt~~~Ke~Kek~kps-------------l~ke-~DP~~glmnvmKk~YeDGD~~mK~tIaKAWtesr~k 215 (224)
T KOG3260|consen 154 ENTRWDYLTQVEKECKEKEKPS-------------LDKE-TDPSEGLMNVMKKIYEDGDDDMKQTIAKAWTESREK 215 (224)
T ss_pred hcccchHHHHHHHHHhhccCcc-------------cccc-CChHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhh
Confidence 99999999853221100 0111 1112 247789999999999999999999999999999865
No 6
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=99.86 E-value=2.4e-21 Score=164.05 Aligned_cols=104 Identities=16% Similarity=0.341 Sum_probs=91.6
Q ss_pred CcEEEEecCCEEEEEEEeCCCCCCCcEEEEeccEEEEEEEeCCCCCCeeEEeeccCCCcCCCCceEEEeCceEEEEEEcC
Q psy5485 201 IRHNWYQTEKQVVVDALIKQAKAETTQVNIDQNSVDIVVTLDPSSSTQHRLHLNLYRPIDPTTSSFRILGTKIEVKLAKT 280 (384)
Q Consensus 201 ~RyDWyQT~d~VtItI~lKgV~kEdVkVefte~sLsVsi~~~~a~gk~Y~l~IeLf~eIdPeeSk~KVt~~KIEI~LkKk 280 (384)
+.++|||+.+.|+|+|+++++ +++.|+|++++|+|++.+. +|..|.++|+||++|+|++|++++++++|||+|+|+
T Consensus 2 p~v~WaQr~~~V~ltI~v~d~--~d~~v~l~~~~l~f~~~~~--~g~~y~~~l~l~~~I~pe~Sk~~v~~r~ve~~L~K~ 77 (106)
T cd00237 2 AKTLWYDRRDYVFIEFCVEDS--KDVKVDFEKSKLTFSCLNG--DNVKIYNEIELYDRVDPNDSKHKRTDRSILCCLRKG 77 (106)
T ss_pred CcceeeECCCEEEEEEEeCCC--CCcEEEEecCEEEEEEECC--CCcEEEEEEEeecccCcccCeEEeCCceEEEEEEeC
Confidence 458999999999999999974 8999999999999998654 367799999999999999999999999999999998
Q ss_pred CC-CCCCcccccccccCCCCCCCCCCCCcchhhhh
Q psy5485 281 SD-ERWSDLEAKEETKAPSAPKTPYKRDWDKVAQQ 314 (384)
Q Consensus 281 e~-~~WprLek~e~~~kp~yPsSk~kkDWDK~~dE 314 (384)
+. .+|++|++++.+ ++|. ++|||||.||
T Consensus 78 ~~~~~WprL~k~~~k--~~~l----k~DfdkW~D~ 106 (106)
T cd00237 78 KEGVAWPRLTKEKAK--PNWL----SVDFDNWRDW 106 (106)
T ss_pred CCCCCCchhhcCCCC--CCcE----ECcchhccCC
Confidence 74 589999997643 4565 8899999875
No 7
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=99.85 E-value=7e-21 Score=154.52 Aligned_cols=87 Identities=32% Similarity=0.557 Sum_probs=81.7
Q ss_pred CcEEEEecCCEEEEEEEeCCCCCCCcEEEEeccEEEEEEEeCCCCCCeeEEeeccCCCcCCCCceEEEeCceEEEEEEcC
Q psy5485 201 IRHNWYQTEKQVVVDALIKQAKAETTQVNIDQNSVDIVVTLDPSSSTQHRLHLNLYRPIDPTTSSFRILGTKIEVKLAKT 280 (384)
Q Consensus 201 ~RyDWyQT~d~VtItI~lKgV~kEdVkVefte~sLsVsi~~~~a~gk~Y~l~IeLf~eIdPeeSk~KVt~~KIEI~LkKk 280 (384)
+||||||+++.|+|+||+++++++++.|+|++++|+|++..++ ++.|.+.++||++|+|++|++++.+++|||+|+|+
T Consensus 1 ~R~dW~Qs~~~V~ItI~~k~~~~~~~~v~~~~~~l~v~~~~~~--~~~y~~~l~L~~~I~~~~s~~~v~~~kvei~L~K~ 78 (87)
T cd06488 1 CRHDWHQTGSHVVVSVYAKNSNPELSVVEANSTVLTIHIVFEG--NKEFQLDIELWGVIDVEKSSVNMLPTKVEIKLRKA 78 (87)
T ss_pred CCccEeeCCCEEEEEEEECcCCccceEEEecCCEEEEEEECCC--CceEEEEeeccceEChhHcEEEecCcEEEEEEEeC
Confidence 6999999999999999999999999999999999998877664 67899999999999999999999999999999999
Q ss_pred CCCCCCccc
Q psy5485 281 SDERWSDLE 289 (384)
Q Consensus 281 e~~~WprLe 289 (384)
++++|++|+
T Consensus 79 ~~~~W~~Le 87 (87)
T cd06488 79 EPGSWAKLE 87 (87)
T ss_pred CCCcCccCC
Confidence 988999985
No 8
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=99.83 E-value=3e-20 Score=155.54 Aligned_cols=105 Identities=23% Similarity=0.417 Sum_probs=92.1
Q ss_pred cEEEEecCCEEEEEEEeCCCCCCCcEEEEeccEEEEEEEeCCCCCCeeEEeeccCCCcCCCCceEEEeCceEEEEEEcCC
Q psy5485 202 RHNWYQTEKQVVVDALIKQAKAETTQVNIDQNSVDIVVTLDPSSSTQHRLHLNLYRPIDPTTSSFRILGTKIEVKLAKTS 281 (384)
Q Consensus 202 RyDWyQT~d~VtItI~lKgV~kEdVkVefte~sLsVsi~~~~a~gk~Y~l~IeLf~eIdPeeSk~KVt~~KIEI~LkKke 281 (384)
.|+||||.+.|+|+|+++++ +++.|+|++++|.|++.... +++.|.+.++||++|+|++|+|++.+++|+|+|+|++
T Consensus 2 ~~~W~Qt~~~V~i~i~~~~~--~~~~V~~~~~~l~v~~~~~~-~~~~y~~~~~L~~~I~pe~s~~~v~~~kveI~L~K~~ 78 (108)
T cd06465 2 PVLWAQRSDVVYLTIELPDA--KDPKIKLEPTSLSFKAKGGG-GGKKYEFDLEFYKEIDPEESKYKVTGRQIEFVLRKKE 78 (108)
T ss_pred ceeeeECCCEEEEEEEeCCC--CCcEEEEECCEEEEEEEcCC-CCeeEEEEeEhhhhccccccEEEecCCeEEEEEEECC
Confidence 59999999999999999987 89999999999999986542 3677999999999999999999999999999999999
Q ss_pred -CCCCCcccccccccCCCCCCCCCCCCcchhhhhh
Q psy5485 282 -DERWSDLEAKEETKAPSAPKTPYKRDWDKVAQQI 315 (384)
Q Consensus 282 -~~~WprLek~e~~~kp~yPsSk~kkDWDK~~dEd 315 (384)
+.+|++|++.+.+ .|. .+.||++|.+|+
T Consensus 79 ~~~~W~~L~~~~~k----~~~--~~~d~~~w~d~~ 107 (108)
T cd06465 79 AGEYWPRLTKEKGK----LPW--LKVDFDKWVDED 107 (108)
T ss_pred CCCCCcccccCCCC----CCc--eECCchhcccCC
Confidence 8899999986542 232 278999999865
No 9
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=99.81 E-value=1.3e-19 Score=145.07 Aligned_cols=84 Identities=46% Similarity=0.749 Sum_probs=79.1
Q ss_pred EEEecCCEEEEEEEeCCCCCCCcEEEEeccEEEEEEEeCCCCCCeeEEeeccCCCcCCCCceEEEeCceEEEEEEcCCCC
Q psy5485 204 NWYQTEKQVVVDALIKQAKAETTQVNIDQNSVDIVVTLDPSSSTQHRLHLNLYRPIDPTTSSFRILGTKIEVKLAKTSDE 283 (384)
Q Consensus 204 DWyQT~d~VtItI~lKgV~kEdVkVefte~sLsVsi~~~~a~gk~Y~l~IeLf~eIdPeeSk~KVt~~KIEI~LkKke~~ 283 (384)
||||+++.|+|+|+++++.++++.|+|++++|+|++...+ +..|.++++||++|+|++|++++++++|||+|+|+++.
T Consensus 1 dW~Q~~~~V~iti~~k~~~~~~~~v~~~~~~l~~~~~~~~--~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~~ 78 (84)
T cd06489 1 DWYQTESQVVITILIKNVKPEDVSVEFEKRELSATVKLPS--GNDYSLKLHLLHPIVPEQSSYKILSTKIEIKLKKTEAI 78 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEeCCEEEEEEECCC--CCcEEEeeecCceecchhcEEEEeCcEEEEEEEcCCCC
Confidence 7999999999999999999999999999999999987653 66899999999999999999999999999999999988
Q ss_pred CCCccc
Q psy5485 284 RWSDLE 289 (384)
Q Consensus 284 ~WprLe 289 (384)
+|++|+
T Consensus 79 ~W~~Le 84 (84)
T cd06489 79 RWSKLE 84 (84)
T ss_pred CCccCC
Confidence 999985
No 10
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=99.75 E-value=1.1e-17 Score=135.34 Aligned_cols=87 Identities=28% Similarity=0.483 Sum_probs=79.2
Q ss_pred CcEEEEecCCEEEEEEEeCCCCC---CCcEEEEeccEEEEEEEeCCCCCCeeEEee-ccCCCcCCCCceEEEeCceEEEE
Q psy5485 201 IRHNWYQTEKQVVVDALIKQAKA---ETTQVNIDQNSVDIVVTLDPSSSTQHRLHL-NLYRPIDPTTSSFRILGTKIEVK 276 (384)
Q Consensus 201 ~RyDWyQT~d~VtItI~lKgV~k---EdVkVefte~sLsVsi~~~~a~gk~Y~l~I-eLf~eIdPeeSk~KVt~~KIEI~ 276 (384)
-+|+|+|+.+.|+|+|+++++.+ +++.|+|++++|.|.+...+ +.+|.+.+ +||++|+|++|+|++.+++|+|+
T Consensus 2 ~~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~~~l~v~~~~~~--~~~~~~~~~~L~~~I~~e~s~~~~~~~ki~i~ 79 (92)
T cd06468 2 TKYAWDQSDKFVKIYITLKGVHQLPKENIQVEFTERSFELKVHDLN--GKNYRFTINRLLKKIDPEKSSFKVKTDRIVIT 79 (92)
T ss_pred ceeeeecCCCEEEEEEEccCCCcCCcccEEEEecCCEEEEEEECCC--CcEEEEEehHhhCccCccccEEEEeCCEEEEE
Confidence 36999999999999999998865 89999999999999986543 67899999 49999999999999999999999
Q ss_pred EEcCCCCCCCccc
Q psy5485 277 LAKTSDERWSDLE 289 (384)
Q Consensus 277 LkKke~~~WprLe 289 (384)
|.|+++.+|++|+
T Consensus 80 L~K~~~~~W~~L~ 92 (92)
T cd06468 80 LAKKKEKKWESLT 92 (92)
T ss_pred EEeCCCCccCccC
Confidence 9999989999984
No 11
>KOG3158|consensus
Probab=99.74 E-value=1.5e-18 Score=158.22 Aligned_cols=110 Identities=20% Similarity=0.313 Sum_probs=95.9
Q ss_pred CcEEEEecCCEEEEEEEeCCCCCCCcEEEEeccEEEEEEEeCCCCCCeeEEeeccCCCcCCCCceEEEeCceEEEEEEcC
Q psy5485 201 IRHNWYQTEKQVVVDALIKQAKAETTQVNIDQNSVDIVVTLDPSSSTQHRLHLNLYRPIDPTTSSFRILGTKIEVKLAKT 280 (384)
Q Consensus 201 ~RyDWyQT~d~VtItI~lKgV~kEdVkVefte~sLsVsi~~~~a~gk~Y~l~IeLf~eIdPeeSk~KVt~~KIEI~LkKk 280 (384)
|-+.|+||.+.|+|+|.+.+ ..++.|.+++..|.|++.... +++.|.++|+||++|+|++|+++++++.|..+|+|+
T Consensus 8 p~v~Waqr~~~vyltv~Ved--~~d~~v~~e~~~l~fs~k~~~-d~~~~~~~ief~~eIdpe~sk~k~~~r~if~i~~K~ 84 (180)
T KOG3158|consen 8 PEVKWAQRRDLVYLTVCVED--AKDVHVNLEPSKLTFSCKSGA-DNHKYENEIEFFDEIDPEKSKHKRTSRSIFCILRKK 84 (180)
T ss_pred CcchhhhhcCeEEEEEEecc--CccceeeccccEEEEEeccCC-CceeeEEeeehhhhcCHhhccccccceEEEEEEEcc
Confidence 45799999999999999995 478999999999999988653 577888899999999999999999999999999998
Q ss_pred CC-CCCCcccccccccCCCCCCCCCCCCcchhhhhhhhhh
Q psy5485 281 SD-ERWSDLEAKEETKAPSAPKTPYKRDWDKVAQQIEDEK 319 (384)
Q Consensus 281 e~-~~WprLek~e~~~kp~yPsSk~kkDWDK~~dEdEdEe 319 (384)
+. .+||+|++.+. +++|. +.|||||++|+|+++
T Consensus 85 e~~~~WprLtkeK~--K~hwL----kvDFdkW~Dededde 118 (180)
T KOG3158|consen 85 ELGEYWPRLTKEKA--KLHWL----KVDFDKWVDEDEDDE 118 (180)
T ss_pred ccccccchhhhccc--ccceE----Ecchhhccccccccc
Confidence 86 89999998765 35776 789999999885554
No 12
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=99.74 E-value=7.9e-18 Score=132.92 Aligned_cols=84 Identities=33% Similarity=0.654 Sum_probs=78.3
Q ss_pred EEEecCCEEEEEEEeCCCCCCCcEEEEeccEEEEEEEeCCCCCCeeEEeeccCCCcCCCCceEEEeCceEEEEEEcCCCC
Q psy5485 204 NWYQTEKQVVVDALIKQAKAETTQVNIDQNSVDIVVTLDPSSSTQHRLHLNLYRPIDPTTSSFRILGTKIEVKLAKTSDE 283 (384)
Q Consensus 204 DWyQT~d~VtItI~lKgV~kEdVkVefte~sLsVsi~~~~a~gk~Y~l~IeLf~eIdPeeSk~KVt~~KIEI~LkKke~~ 283 (384)
||+|+++.|+|+|+++++.++++.|+|++++|.|++...+ +..|.+.++||++|+|++|++++.+++|+|+|+|++++
T Consensus 1 dW~Qt~~~v~i~v~~~~~~~~~v~v~~~~~~l~i~~~~~~--~~~~~~~~~L~~~I~~~~s~~~~~~~~vei~L~K~~~~ 78 (84)
T cd06466 1 DWYQTDTSVTVTIYAKNVDKEDVKVEFNEQSLSVSIILPG--GSEYQLELDLFGPIDPEQSKVSVLPTKVEITLKKAEPG 78 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEecCEEEEEEECCC--CCeEEEecccccccCchhcEEEEeCeEEEEEEEcCCCC
Confidence 7999999999999999999999999999999999887542 56899999999999999999999999999999999989
Q ss_pred CCCccc
Q psy5485 284 RWSDLE 289 (384)
Q Consensus 284 ~WprLe 289 (384)
.|++|+
T Consensus 79 ~W~~L~ 84 (84)
T cd06466 79 SWPSLE 84 (84)
T ss_pred CCccCC
Confidence 999985
No 13
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=99.65 E-value=8.1e-16 Score=125.43 Aligned_cols=83 Identities=28% Similarity=0.456 Sum_probs=71.7
Q ss_pred EEEEecCCEEEEEEEeCC--CCCCCcEEEEeccEEEEEEEeCCCCCCeeEEeeccCCCcCCCCceEEEe--CceEEEEEE
Q psy5485 203 HNWYQTEKQVVVDALIKQ--AKAETTQVNIDQNSVDIVVTLDPSSSTQHRLHLNLYRPIDPTTSSFRIL--GTKIEVKLA 278 (384)
Q Consensus 203 yDWyQT~d~VtItI~lKg--V~kEdVkVefte~sLsVsi~~~~a~gk~Y~l~IeLf~eIdPeeSk~KVt--~~KIEI~Lk 278 (384)
|||||+++.|+|+||+|+ .+..++.+++.+++|++++..+ +..|.++++|+++|+|+. ++++. ++||||+|+
T Consensus 1 ~DWyQt~~~Vtitiy~K~~~~~~~~v~v~~~~~~l~v~~~~~---~~~~~~~~~L~~~I~~~~-~~~~~~~~~KVEI~L~ 76 (87)
T cd06490 1 YDWFQTDSEVTIVVYTKSKGNPADIVIVDDQQRELRVEIILG---DKSYLLHLDLSNEVQWPC-EVRISTETGKIELVLK 76 (87)
T ss_pred CCceECCCEEEEEEEEcccCCCCccEEEECCCCEEEEEEECC---CceEEEeeeccccCCCCc-EEEEcccCceEEEEEE
Confidence 799999999999999884 5566677888888999988754 567999999999998764 88888 559999999
Q ss_pred cCCCCCCCccc
Q psy5485 279 KTSDERWSDLE 289 (384)
Q Consensus 279 Kke~~~WprLe 289 (384)
|+++..|++|+
T Consensus 77 K~e~~~W~~Lg 87 (87)
T cd06490 77 KKEPEKWTSLG 87 (87)
T ss_pred cCCCCccccCc
Confidence 99999999984
No 14
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=99.64 E-value=2.3e-15 Score=115.88 Aligned_cols=77 Identities=29% Similarity=0.517 Sum_probs=69.3
Q ss_pred CcEEEEecCCEEEEEEEeCCCC--CCCcEEEEeccEEEEEEEeCCCCCCeeEEeeccCCCcCCCCceEEEeCceEEEEEE
Q psy5485 201 IRHNWYQTEKQVVVDALIKQAK--AETTQVNIDQNSVDIVVTLDPSSSTQHRLHLNLYRPIDPTTSSFRILGTKIEVKLA 278 (384)
Q Consensus 201 ~RyDWyQT~d~VtItI~lKgV~--kEdVkVefte~sLsVsi~~~~a~gk~Y~l~IeLf~eIdPeeSk~KVt~~KIEI~Lk 278 (384)
++|+|+|+.+.|+|+|++++.. ++++.|+|++++|.|++...+ +..|.+.++||++|+|++|+|++.+++|+|+|+
T Consensus 1 ~~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~~~~l~v~~~~~~--~~~~~~~~~L~~~I~~~~s~~~~~~~~i~i~L~ 78 (79)
T PF04969_consen 1 PRYDWYQTDDEVTVTIPVKPVDISKEDVKVDFTDTSLSVSIKSGD--GKEYLLEGELFGEIDPDESTWKVKDNKIEITLK 78 (79)
T ss_dssp SSEEEEEESSEEEEEEE-TTTTSSGGGEEEEEETTEEEEEEEETT--SCEEEEEEEBSS-BECCCEEEEEETTEEEEEEE
T ss_pred CCeEEEECCCEEEEEEEEcCCCCChHHeEEEEEeeEEEEEEEccC--CceEEEEEEEeeeEcchhcEEEEECCEEEEEEE
Confidence 5899999999999999997654 899999999999999987664 588999999999999999999999999999999
Q ss_pred c
Q psy5485 279 K 279 (384)
Q Consensus 279 K 279 (384)
|
T Consensus 79 K 79 (79)
T PF04969_consen 79 K 79 (79)
T ss_dssp B
T ss_pred C
Confidence 8
No 15
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=99.62 E-value=3.4e-15 Score=115.40 Aligned_cols=83 Identities=30% Similarity=0.522 Sum_probs=77.0
Q ss_pred EEecCCEEEEEEEeCCCCCCCcEEEEeccEEEEEEEeCCCCCCeeEEeeccCCCcCCCCceEEEeCceEEEEEEcCCC-C
Q psy5485 205 WYQTEKQVVVDALIKQAKAETTQVNIDQNSVDIVVTLDPSSSTQHRLHLNLYRPIDPTTSSFRILGTKIEVKLAKTSD-E 283 (384)
Q Consensus 205 WyQT~d~VtItI~lKgV~kEdVkVefte~sLsVsi~~~~a~gk~Y~l~IeLf~eIdPeeSk~KVt~~KIEI~LkKke~-~ 283 (384)
|+|+++.|+|+|+++++.++++.|+|++++|+|++...+ +..|.+.++|+++|+|++|++++.+++|+|+|.|+++ .
T Consensus 1 W~Q~~~~v~i~v~~~~~~~~~~~v~~~~~~l~i~~~~~~--~~~~~~~~~L~~~I~~~~s~~~~~~~~l~i~L~K~~~~~ 78 (84)
T cd06463 1 WYQTLDEVTITIPLKDVTKKDVKVEFTPKSLTVSVKGGG--GKEYLLEGELFGPIDPEESKWTVEDRKIEITLKKKEPGE 78 (84)
T ss_pred CcccccEEEEEEEcCCCCccceEEEEecCEEEEEeeCCC--CCceEEeeEccCccchhhcEEEEeCCEEEEEEEECCCCC
Confidence 999999999999999998999999999999999987542 5789999999999999999999999999999999987 8
Q ss_pred CCCccc
Q psy5485 284 RWSDLE 289 (384)
Q Consensus 284 ~WprLe 289 (384)
.|++|.
T Consensus 79 ~W~~l~ 84 (84)
T cd06463 79 WWPRLE 84 (84)
T ss_pred CCcccC
Confidence 999984
No 16
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=99.62 E-value=3.4e-15 Score=116.80 Aligned_cols=78 Identities=23% Similarity=0.330 Sum_probs=72.7
Q ss_pred EEecCCEEEEEEEeCCCCCCCcEEEEeccEEEEEEEeCCCCCCeeEEeeccCCCcCCCCceEEEeCceEEEEEEcCCCCC
Q psy5485 205 WYQTEKQVVVDALIKQAKAETTQVNIDQNSVDIVVTLDPSSSTQHRLHLNLYRPIDPTTSSFRILGTKIEVKLAKTSDER 284 (384)
Q Consensus 205 WyQT~d~VtItI~lKgV~kEdVkVefte~sLsVsi~~~~a~gk~Y~l~IeLf~eIdPeeSk~KVt~~KIEI~LkKke~~~ 284 (384)
|+|+++.|+|+|+++|+.++++.|+++++.|.|++ ..|.+.++|+++|+|++|++++.+++|+|+|.|+++++
T Consensus 1 W~Qt~~~v~i~i~~p~v~~~~v~v~~~~~~l~i~~-------~~~~~~~~l~~~I~~e~~~~~~~~~~l~i~L~K~~~~~ 73 (78)
T cd06469 1 WSQTDEDVKISVPLKGVKTSKVDIFCSDLYLKVNF-------PPYLFELDLAAPIDDEKSSAKIGNGVLVFTLVKKEPGI 73 (78)
T ss_pred CcccCCEEEEEEEeCCCccccceEEEecCEEEEcC-------CCEEEEEeCcccccccccEEEEeCCEEEEEEEeCCCCc
Confidence 99999999999999999999999999998877754 36999999999999999999999999999999998889
Q ss_pred CCccc
Q psy5485 285 WSDLE 289 (384)
Q Consensus 285 WprLe 289 (384)
|++|+
T Consensus 74 W~~L~ 78 (78)
T cd06469 74 WEALC 78 (78)
T ss_pred ccccC
Confidence 99985
No 17
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=99.56 E-value=2.2e-14 Score=115.70 Aligned_cols=82 Identities=23% Similarity=0.432 Sum_probs=71.0
Q ss_pred EEEEecCCEEEEEEEe-CCCCCCCcEEEEeccEEEEEEEeCCCCCCeeEEeeccCCCcCCCCceEEEeCc-eEEEEEEcC
Q psy5485 203 HNWYQTEKQVVVDALI-KQAKAETTQVNIDQNSVDIVVTLDPSSSTQHRLHLNLYRPIDPTTSSFRILGT-KIEVKLAKT 280 (384)
Q Consensus 203 yDWyQT~d~VtItI~l-KgV~kEdVkVefte~sLsVsi~~~~a~gk~Y~l~IeLf~eIdPeeSk~KVt~~-KIEI~LkKk 280 (384)
|+|+||.+.|+|+|++ +++.++++.|+|++++|.|.+. +....+..+||+.|+|++|+|++..+ +|+|.|.|+
T Consensus 1 Y~W~Qt~~~V~v~i~~p~~~~~~dv~v~~~~~~l~v~~~-----~~~~~~~g~L~~~I~~d~Stw~i~~~~~l~i~L~K~ 75 (85)
T cd06493 1 YYWQQTEEDLTLTIRLPEDTTKEDIRIKFLPDHISIALK-----DQAPLLEGKLYSSIDHESSTWIIKENKSLEVSLIKK 75 (85)
T ss_pred CccEEeCCEEEEEEECCCCCChhhEEEEEecCEEEEEeC-----CCCeEEeCcccCcccccCcEEEEeCCCEEEEEEEEC
Confidence 7999999999999999 5888999999999999999873 22334777999999999999999765 699999999
Q ss_pred CC-CCCCccc
Q psy5485 281 SD-ERWSDLE 289 (384)
Q Consensus 281 e~-~~WprLe 289 (384)
++ .+|++|.
T Consensus 76 ~~~~~W~~L~ 85 (85)
T cd06493 76 DEGPTWPELV 85 (85)
T ss_pred CCCccccccC
Confidence 85 5999984
No 18
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=99.55 E-value=2.4e-14 Score=113.69 Aligned_cols=81 Identities=23% Similarity=0.412 Sum_probs=73.2
Q ss_pred EEEEecCCEEEEEEEeC-CCCCCCcEEEEeccEEEEEEEeCCCCCCeeEEeeccCCCcCCCCceEEEeC-ceEEEEEEcC
Q psy5485 203 HNWYQTEKQVVVDALIK-QAKAETTQVNIDQNSVDIVVTLDPSSSTQHRLHLNLYRPIDPTTSSFRILG-TKIEVKLAKT 280 (384)
Q Consensus 203 yDWyQT~d~VtItI~lK-gV~kEdVkVefte~sLsVsi~~~~a~gk~Y~l~IeLf~eIdPeeSk~KVt~-~KIEI~LkKk 280 (384)
|+|+|+.+.|+|+|.++ ++.++++.|+|++++|+|++. +..+.+...||++|+|++|+|++.+ ++|+|+|.|+
T Consensus 1 y~W~Qt~~~V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~-----~~~~~l~~~L~~~I~~~~s~w~~~~~~~v~i~L~K~ 75 (85)
T cd06467 1 YSWTQTLDEVTVTIPLPEGTKSKDVKVEITPKHLKVGVK-----GGEPLLDGELYAKVKVDESTWTLEDGKLLEITLEKR 75 (85)
T ss_pred CEEEeeCCEEEEEEECCCCCcceeEEEEEEcCEEEEEEC-----CCCceEcCcccCceeEcCCEEEEeCCCEEEEEEEEC
Confidence 79999999999999985 667899999999999999873 2357788899999999999999999 9999999999
Q ss_pred CC-CCCCcc
Q psy5485 281 SD-ERWSDL 288 (384)
Q Consensus 281 e~-~~WprL 288 (384)
++ ..|++|
T Consensus 76 ~~~~~W~~L 84 (85)
T cd06467 76 NEGEWWPSL 84 (85)
T ss_pred CCCcccccc
Confidence 87 799987
No 19
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=99.33 E-value=7.6e-12 Score=104.04 Aligned_cols=83 Identities=18% Similarity=0.417 Sum_probs=72.2
Q ss_pred CCcEEEEecCCEEEEEEEe-CCCCCCCcEEEEeccEEEEEEEeCCCCCCeeEEeeccCCCcCCCCceEEEeCce-EEEEE
Q psy5485 200 NIRHNWYQTEKQVVVDALI-KQAKAETTQVNIDQNSVDIVVTLDPSSSTQHRLHLNLYRPIDPTTSSFRILGTK-IEVKL 277 (384)
Q Consensus 200 k~RyDWyQT~d~VtItI~l-KgV~kEdVkVefte~sLsVsi~~~~a~gk~Y~l~IeLf~eIdPeeSk~KVt~~K-IEI~L 277 (384)
..+|.|+||.+.|+|+|.+ +++..+++.|.|++++|.|.+. +.. .+..+||+.|+|++|+|.+.+++ |+|.|
T Consensus 5 ~~~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i~~~~l~V~~~-----g~~-~l~G~L~~~I~~destWtled~k~l~I~L 78 (93)
T cd06494 5 TPWGCWYQTMDEVFIEVNVPPGTRAKDVKCKLGSRDISLAVK-----GQE-VLKGKLFDSVVADECTWTLEDRKLIRIVL 78 (93)
T ss_pred CCCcEEEeEcCEEEEEEECCCCCceeeEEEEEEcCEEEEEEC-----CEE-EEcCcccCccCcccCEEEEECCcEEEEEE
Confidence 3679999999999999965 5788999999999999999873 334 56779999999999999999999 69999
Q ss_pred EcCCC---CCCCcc
Q psy5485 278 AKTSD---ERWSDL 288 (384)
Q Consensus 278 kKke~---~~WprL 288 (384)
.|.+. ..|++|
T Consensus 79 ~K~~~~~~~~W~sl 92 (93)
T cd06494 79 TKSNRDAGNCWKSL 92 (93)
T ss_pred EeCCCCCCcccccc
Confidence 99864 489986
No 20
>KOG1667|consensus
Probab=99.33 E-value=2.9e-12 Score=123.48 Aligned_cols=93 Identities=24% Similarity=0.405 Sum_probs=85.6
Q ss_pred CCCcEEEEecCCEEEEEEEeCCCCCCCcEEEEeccEEEEEEEeCCCCCCeeEEeeccCCCcCCCCceEEEeCceEEEEEE
Q psy5485 199 QNIRHNWYQTEKQVVVDALIKQAKAETTQVNIDQNSVDIVVTLDPSSSTQHRLHLNLYRPIDPTTSSFRILGTKIEVKLA 278 (384)
Q Consensus 199 ~k~RyDWyQT~d~VtItI~lKgV~kEdVkVefte~sLsVsi~~~~a~gk~Y~l~IeLf~eIdPeeSk~KVt~~KIEI~Lk 278 (384)
.++||||.||+..|+|+||.++..++.-.|+.++..|.|++..+. ++..|.++++|++.|++++|++.+..+||||.|+
T Consensus 213 ~~cR~Dwhqt~~~Vti~VY~k~~lpe~s~iean~~~l~V~ivf~~-gna~fd~d~kLwgvvnve~s~v~m~~tkVEIsl~ 291 (320)
T KOG1667|consen 213 VKCRHDWHQTNGFVTINVYAKGALPETSNIEANGTTLHVSIVFGF-GNASFDLDYKLWGVVNVEESSVVMGETKVEISLK 291 (320)
T ss_pred ccchhhhhhcCCeEEEEEEeccCCcccceeeeCCeEEEEEEEecC-CCceeeccceeeeeechhhceEEeecceEEEEEe
Confidence 569999999999999999999988999999999999999988753 4678999999999999999999999999999999
Q ss_pred cCCCCCCCcccccc
Q psy5485 279 KTSDERWSDLEAKE 292 (384)
Q Consensus 279 Kke~~~WprLek~e 292 (384)
|++++.|++|+...
T Consensus 292 k~ep~sWa~Le~p~ 305 (320)
T KOG1667|consen 292 KAEPGSWARLEFPP 305 (320)
T ss_pred ccCCCCcccccCCH
Confidence 99999999999753
No 21
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=99.22 E-value=7.3e-11 Score=96.66 Aligned_cols=82 Identities=24% Similarity=0.341 Sum_probs=71.3
Q ss_pred EEEEecCCEEEEEEEeCC---CCCCCcEEEEeccEEEEEEEeCCCCCCeeEEeeccCCCcCCCCceEEEeCc-eEEEEEE
Q psy5485 203 HNWYQTEKQVVVDALIKQ---AKAETTQVNIDQNSVDIVVTLDPSSSTQHRLHLNLYRPIDPTTSSFRILGT-KIEVKLA 278 (384)
Q Consensus 203 yDWyQT~d~VtItI~lKg---V~kEdVkVefte~sLsVsi~~~~a~gk~Y~l~IeLf~eIdPeeSk~KVt~~-KIEI~Lk 278 (384)
|.|.||.+.|+|+|.++. +.++++.|+++.++|+|.+. +..+.++.+||++|++++|+|.+.++ .|+|.|.
T Consensus 1 Y~W~QT~~ev~v~v~l~~~~~~~~kdv~v~i~~~~l~v~~~-----g~~~~i~G~L~~~V~~des~Wtled~~~l~i~L~ 75 (87)
T cd06492 1 YRWTQTLSEVELKVPFKVSFRLKGKDVVVDIQRKHLKVGLK-----GQPPIIDGELYNEVKVEESSWLIEDGKVVTVNLE 75 (87)
T ss_pred CccEeecCEEEEEEECCCCCCccceEEEEEEecCEEEEEEC-----CCceEEeCcccCcccccccEEEEeCCCEEEEEEE
Confidence 789999999999999852 67889999999999999873 44567888999999999999999875 6999999
Q ss_pred cCC-CCCCCccc
Q psy5485 279 KTS-DERWSDLE 289 (384)
Q Consensus 279 Kke-~~~WprLe 289 (384)
|.. ..+|++|.
T Consensus 76 K~~~~~wW~~l~ 87 (87)
T cd06492 76 KINKMEWWSRLV 87 (87)
T ss_pred ECCCCccccccC
Confidence 986 46999873
No 22
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=99.18 E-value=2.6e-10 Score=96.49 Aligned_cols=90 Identities=18% Similarity=0.261 Sum_probs=75.4
Q ss_pred CcEEEEecCCEEEEEEEeC-CC-CCCCcEEEEeccEEEEEEEeCCCCCCeeEEeeccCCCcCCCCceEEEeCce-EEEEE
Q psy5485 201 IRHNWYQTEKQVVVDALIK-QA-KAETTQVNIDQNSVDIVVTLDPSSSTQHRLHLNLYRPIDPTTSSFRILGTK-IEVKL 277 (384)
Q Consensus 201 ~RyDWyQT~d~VtItI~lK-gV-~kEdVkVefte~sLsVsi~~~~a~gk~Y~l~IeLf~eIdPeeSk~KVt~~K-IEI~L 277 (384)
-+|.|.||-+.|.|+|.++ ++ ..+++.|+|+.++|.|.+.... +..-.++-+||+.|++++|+|.+.+++ |+|.|
T Consensus 5 e~Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i~~~~l~v~~~~~~--~~~~~i~G~L~~~V~~des~Wtled~~~l~I~L 82 (102)
T cd06495 5 ENYTWSQDYTDVEVRVPVPKDVVKGRQVSVDLQSSSIRVSVRDGG--GEKVLMEGEFTHKINTENSLWSLEPGKCVLLSL 82 (102)
T ss_pred CceEEEeECCeEEEEEECCCCCccceEEEEEEEcCEEEEEEecCC--CCceEEeCcccCcccCccceEEEeCCCEEEEEE
Confidence 4799999999999999987 43 4789999999999999986421 222347779999999999999999865 89999
Q ss_pred EcCCCCCCCcccccc
Q psy5485 278 AKTSDERWSDLEAKE 292 (384)
Q Consensus 278 kKke~~~WprLek~e 292 (384)
.|....+|++|...+
T Consensus 83 ~K~~~~wW~~v~~g~ 97 (102)
T cd06495 83 SKCSEVWWNAVLKGE 97 (102)
T ss_pred EECCCcccchhhCCC
Confidence 998878999987643
No 23
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=99.06 E-value=7.4e-10 Score=82.97 Aligned_cols=75 Identities=27% Similarity=0.422 Sum_probs=68.1
Q ss_pred EEecCCEEEEEEEeCCCCCCCcEEEEeccEEEEEEEeCCC-----CCCeeEEeeccCCCcCCCCceEEEeCceEEEEEEc
Q psy5485 205 WYQTEKQVVVDALIKQAKAETTQVNIDQNSVDIVVTLDPS-----SSTQHRLHLNLYRPIDPTTSSFRILGTKIEVKLAK 279 (384)
Q Consensus 205 WyQT~d~VtItI~lKgV~kEdVkVefte~sLsVsi~~~~a-----~gk~Y~l~IeLf~eIdPeeSk~KVt~~KIEI~LkK 279 (384)
|+|+++.|+|+|+++++.++++.|.++++.|.|++..... ....|.+.+.|+++|+|+++++.+.++.|+|.|.|
T Consensus 1 ~~q~~~~v~i~i~~~~~~~~~i~v~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~~~l~i~l~K 80 (80)
T cd00298 1 WYQTDDEVVVTVDLPGVKKEDIKVEVEDNVLTISGKREEEEERERSYGEFERSFELPEDVDPEKSKASLENGVLEITLPK 80 (80)
T ss_pred CEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcCCCcceEeeeeEEEEEECCCCcCHHHCEEEEECCEEEEEEcC
Confidence 8999999999999999999999999999999999875420 14689999999999999999999999999999987
No 24
>KOG2265|consensus
Probab=98.66 E-value=1.7e-07 Score=86.43 Aligned_cols=89 Identities=21% Similarity=0.321 Sum_probs=73.0
Q ss_pred CCCcEEEEecCCEEEEEEEeC-CC-CCCCcEEEEeccEEEEEEEeCCCCCCeeEEeeccCCCcCCCCceEEEeCceEEEE
Q psy5485 199 QNIRHNWYQTEKQVVVDALIK-QA-KAETTQVNIDQNSVDIVVTLDPSSSTQHRLHLNLYRPIDPTTSSFRILGTKIEVK 276 (384)
Q Consensus 199 ~k~RyDWyQT~d~VtItI~lK-gV-~kEdVkVefte~sLsVsi~~~~a~gk~Y~l~IeLf~eIdPeeSk~KVt~~KIEI~ 276 (384)
....|.|+||=+.|.|.|.++ +. ...++.|.+..++|.|.+. +.+-.+..+|+++|++++|.|.+.++++.++
T Consensus 17 ~~~~y~W~QtL~EV~i~i~vp~~~~ksk~v~~~Iq~~hI~V~~k-----g~~~ildG~L~~~vk~des~WtiEd~k~i~i 91 (179)
T KOG2265|consen 17 DEEKYTWDQTLEEVEIQIPVPPGTAKSKDVHCSIQSKHIKVGLK-----GQPPILDGELSHSVKVDESTWTIEDGKMIVI 91 (179)
T ss_pred cccceeeeeehhheEEEeecCCCCcccceEEEEeeeeEEEEecC-----CCCceecCccccccccccceEEecCCEEEEE
Confidence 345799999999999998854 55 6788999999999988874 4445688899999999999999999987776
Q ss_pred EEcCCC--CCCCcccccc
Q psy5485 277 LAKTSD--ERWSDLEAKE 292 (384)
Q Consensus 277 LkKke~--~~WprLek~e 292 (384)
+-|+.. .+|.+|...+
T Consensus 92 ~l~K~~~~eWW~~ll~ge 109 (179)
T KOG2265|consen 92 LLKKSNKMEWWDSLLEGE 109 (179)
T ss_pred EeeccchHHHHHHHHcCC
Confidence 666554 7999988654
No 25
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=4e-05 Score=67.78 Aligned_cols=83 Identities=13% Similarity=0.177 Sum_probs=72.8
Q ss_pred CCcEEEEecCCEEEEEEEeCCCCCCCcEEEEeccEEEEEEEeCCCC-------------CCeeEEeeccCCCcCCCCceE
Q psy5485 200 NIRHNWYQTEKQVVVDALIKQAKAETTQVNIDQNSVDIVVTLDPSS-------------STQHRLHLNLYRPIDPTTSSF 266 (384)
Q Consensus 200 k~RyDWyQT~d~VtItI~lKgV~kEdVkVefte~sLsVsi~~~~a~-------------gk~Y~l~IeLf~eIdPeeSk~ 266 (384)
.|.|+.+++++.+.|++.++|++++++.|.+.++.|+|++...... ...|...+.|...|+|+..+.
T Consensus 40 ~P~vdi~e~~~~~~I~~elPG~~kedI~I~~~~~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~~~~~~A 119 (146)
T COG0071 40 TPPVDIEETDDEYRITAELPGVDKEDIEITVEGNTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVDPEVIKA 119 (146)
T ss_pred CCcEEEEEcCCEEEEEEEcCCCChHHeEEEEECCEEEEEEEecccccccCCceEEEEEEeeeEEEEEECcccccccceee
Confidence 3569999999999999999999999999999999999998765200 246888899999999998888
Q ss_pred EEeCceEEEEEEcCCC
Q psy5485 267 RILGTKIEVKLAKTSD 282 (384)
Q Consensus 267 KVt~~KIEI~LkKke~ 282 (384)
+..++-+.|+|.|.++
T Consensus 120 ~~~nGvL~I~lpk~~~ 135 (146)
T COG0071 120 KYKNGLLTVTLPKAEP 135 (146)
T ss_pred EeeCcEEEEEEecccc
Confidence 9999999999999764
No 26
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=98.04 E-value=3.7e-05 Score=62.73 Aligned_cols=78 Identities=19% Similarity=0.222 Sum_probs=66.4
Q ss_pred cEEEEecCCEEEEEEEeCCCCCCCcEEEEecc-EEEEEEEeCCC-------------CCCeeEEeeccCCCcCCCCceEE
Q psy5485 202 RHNWYQTEKQVVVDALIKQAKAETTQVNIDQN-SVDIVVTLDPS-------------SSTQHRLHLNLYRPIDPTTSSFR 267 (384)
Q Consensus 202 RyDWyQT~d~VtItI~lKgV~kEdVkVefte~-sLsVsi~~~~a-------------~gk~Y~l~IeLf~eIdPeeSk~K 267 (384)
|+||+++++.+.|.+.++|+.++++.|.+.++ .|.|++..... ....|...+.|...|+++..+..
T Consensus 1 ~~dv~E~~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~~i~A~ 80 (92)
T cd06472 1 RVDWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENADADEVKAF 80 (92)
T ss_pred CccEEEcCCeEEEEEECCCCChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCCCCHHHCEEE
Confidence 57999999999999999999999999999875 78888753210 02367778899999999988999
Q ss_pred EeCceEEEEEEc
Q psy5485 268 ILGTKIEVKLAK 279 (384)
Q Consensus 268 Vt~~KIEI~LkK 279 (384)
+..+-++|+|.|
T Consensus 81 ~~nGvL~I~lPK 92 (92)
T cd06472 81 LENGVLTVTVPK 92 (92)
T ss_pred EECCEEEEEecC
Confidence 999999999987
No 27
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=97.78 E-value=0.00018 Score=58.53 Aligned_cols=77 Identities=16% Similarity=0.195 Sum_probs=64.1
Q ss_pred cEEEEecCCEEEEEEEeCCCCCCCcEEEEeccEEEEEEEeCCC-----C----------CCeeEEeeccCCCcCCCCceE
Q psy5485 202 RHNWYQTEKQVVVDALIKQAKAETTQVNIDQNSVDIVVTLDPS-----S----------STQHRLHLNLYRPIDPTTSSF 266 (384)
Q Consensus 202 RyDWyQT~d~VtItI~lKgV~kEdVkVefte~sLsVsi~~~~a-----~----------gk~Y~l~IeLf~eIdPeeSk~ 266 (384)
++|++++++.+.|.+.++|+.++++.|++.++.|.|++..... . ...|...+.|- .|+++..+.
T Consensus 2 ~~di~e~~~~~~i~~~lPGv~~edi~v~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp-~v~~~~i~A 80 (93)
T cd06471 2 KTDIKETDDEYIVEADLPGFKKEDIKLDYKDGYLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-NVDEEEIKA 80 (93)
T ss_pred ceeEEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEccccccccccCCEEEEeeeccEEEEEEECC-CCCHHHCEE
Confidence 6899999999999999999999999999999999998755310 0 11355667775 799988899
Q ss_pred EEeCceEEEEEEc
Q psy5485 267 RILGTKIEVKLAK 279 (384)
Q Consensus 267 KVt~~KIEI~LkK 279 (384)
++..+.+.|+|.|
T Consensus 81 ~~~dGvL~I~lPK 93 (93)
T cd06471 81 KYENGVLKITLPK 93 (93)
T ss_pred EEECCEEEEEEcC
Confidence 9999999999987
No 28
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=97.65 E-value=0.00034 Score=54.68 Aligned_cols=76 Identities=20% Similarity=0.271 Sum_probs=65.9
Q ss_pred EEEecCCEEEEEEEeCCCCCCCcEEEEeccEEEEEEEeCCC------------CCCeeEEeeccCCCcCCCCceEEEeCc
Q psy5485 204 NWYQTEKQVVVDALIKQAKAETTQVNIDQNSVDIVVTLDPS------------SSTQHRLHLNLYRPIDPTTSSFRILGT 271 (384)
Q Consensus 204 DWyQT~d~VtItI~lKgV~kEdVkVefte~sLsVsi~~~~a------------~gk~Y~l~IeLf~eIdPeeSk~KVt~~ 271 (384)
+++++++.+.|.+.++|+.++++.|.+.++.|.|++..... ....|...+.|-..|+++..+..+..+
T Consensus 1 ~i~e~~~~~~i~~~lpg~~~~~i~V~v~~~~l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~a~~~~G 80 (88)
T cd06464 1 DVYETDDAYVVEADLPGFKKEDIKVEVEDGVLTISGEREEEEEEEENYLRRERSYGSFSRSFRLPEDVDPDKIKASLENG 80 (88)
T ss_pred CcEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecccccCCcEEEEEEeCcEEEEEEECCCCcCHHHcEEEEeCC
Confidence 46889999999999999999999999999999998755421 035688899999999999999999999
Q ss_pred eEEEEEEc
Q psy5485 272 KIEVKLAK 279 (384)
Q Consensus 272 KIEI~LkK 279 (384)
.++|++.|
T Consensus 81 ~L~I~~pk 88 (88)
T cd06464 81 VLTITLPK 88 (88)
T ss_pred EEEEEEcC
Confidence 99999876
No 29
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=97.64 E-value=0.00047 Score=56.42 Aligned_cols=79 Identities=11% Similarity=0.189 Sum_probs=63.4
Q ss_pred EEEecCCEEEEEEEeCCCCCCCcEEEEeccEEEEEEEeC---CCC--------CCeeEEeeccCCCcCCCCceEEEeCce
Q psy5485 204 NWYQTEKQVVVDALIKQAKAETTQVNIDQNSVDIVVTLD---PSS--------STQHRLHLNLYRPIDPTTSSFRILGTK 272 (384)
Q Consensus 204 DWyQT~d~VtItI~lKgV~kEdVkVefte~sLsVsi~~~---~a~--------gk~Y~l~IeLf~eIdPeeSk~KVt~~K 272 (384)
||.++++.+.|.+.++|+.++++.|.+.++.|.|++... ... ...|...+.|...|+++..+.++..+.
T Consensus 1 di~e~~~~~~i~~~lpG~~~edi~I~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~a~~~~Gv 80 (102)
T PF00011_consen 1 DIKEDEDEYIIKVDLPGFDKEDIKIKVDDNKLVISGKRKEEEEDDRYYRSERRYGSFERSIRLPEDVDPDKIKASYENGV 80 (102)
T ss_dssp EEEESSSEEEEEEE-TTS-GGGEEEEEETTEEEEEEEEEGEECTTCEEEE-S-SEEEEEEEE-STTB-GGG-EEEETTSE
T ss_pred CeEECCCEEEEEEECCCCChHHEEEEEecCccceeceeeeeeeeeeeeecccccceEEEEEcCCCcCCcceEEEEecCCE
Confidence 799999999999999999999999999999999987654 100 135777889999999999899999999
Q ss_pred EEEEEEcCCC
Q psy5485 273 IEVKLAKTSD 282 (384)
Q Consensus 273 IEI~LkKke~ 282 (384)
+.|++.|...
T Consensus 81 L~I~~pk~~~ 90 (102)
T PF00011_consen 81 LTITIPKKEE 90 (102)
T ss_dssp EEEEEEBSSS
T ss_pred EEEEEEcccc
Confidence 9999999763
No 30
>KOG4379|consensus
Probab=97.08 E-value=0.00095 Score=69.73 Aligned_cols=85 Identities=21% Similarity=0.320 Sum_probs=70.4
Q ss_pred CcEEEEecCCEEEEEEEeCC-CCCCCcEEEEeccEEEEEEEeCCCCCCeeEEeeccCCCcCCCCceEEEeC-ceEEEEEE
Q psy5485 201 IRHNWYQTEKQVVVDALIKQ-AKAETTQVNIDQNSVDIVVTLDPSSSTQHRLHLNLYRPIDPTTSSFRILG-TKIEVKLA 278 (384)
Q Consensus 201 ~RyDWyQT~d~VtItI~lKg-V~kEdVkVefte~sLsVsi~~~~a~gk~Y~l~IeLf~eIdPeeSk~KVt~-~KIEI~Lk 278 (384)
+.|.|.|+.+.|.+++.++. +..+++.|.+..+.|-+.+. ..-.++.+||+.|..+.|.+.+.. +++|+.|.
T Consensus 290 p~y~w~qt~d~~~~~~~~p~~~~~~~i~Iq~~~~~v~v~~~------dh~~~~g~lyasv~he~s~~ii~ean~Le~sl~ 363 (596)
T KOG4379|consen 290 PSYSWSQTDDNVLIRFNVPSTASAKEINIQGSKTTVVVKHL------DHVIFDGELYASVGHELSAFIIAEANGLELSLT 363 (596)
T ss_pred ccceeeeccCcceEEEecccccccceEEEEecCceEEEEee------eeEEeccchhhhccccchhhhhhhhccceEEEe
Confidence 56999999999999999874 45778889998888766652 234467799999999999998877 89999999
Q ss_pred cCC-CCCCCccccc
Q psy5485 279 KTS-DERWSDLEAK 291 (384)
Q Consensus 279 Kke-~~~WprLek~ 291 (384)
|++ ...|++|...
T Consensus 364 K~de~~twprL~~~ 377 (596)
T KOG4379|consen 364 KADEIQTWPRLFAQ 377 (596)
T ss_pred ecccccccchheee
Confidence 985 5789999754
No 31
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=97.04 E-value=0.0043 Score=50.74 Aligned_cols=75 Identities=16% Similarity=0.128 Sum_probs=63.7
Q ss_pred EEEecCCEEEEEEEeCCCCCCCcEEEEeccEEEEEEEeCCC--CC----CeeEEeeccCCCcCCCCceEEEe-CceEEEE
Q psy5485 204 NWYQTEKQVVVDALIKQAKAETTQVNIDQNSVDIVVTLDPS--SS----TQHRLHLNLYRPIDPTTSSFRIL-GTKIEVK 276 (384)
Q Consensus 204 DWyQT~d~VtItI~lKgV~kEdVkVefte~sLsVsi~~~~a--~g----k~Y~l~IeLf~eIdPeeSk~KVt-~~KIEI~ 276 (384)
+++++++.+.|.+.++|+.+++++|++.++.|.|++..... .+ ..|.-.+.|-..|++++.+..+. ++.+.|.
T Consensus 4 ~i~e~~~~~~v~~dlPG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~~f~R~f~LP~~vd~~~v~A~~~~dGvL~I~ 83 (86)
T cd06475 4 EIRQTADRWKVSLDVNHFAPEELVVKTKDGVVEITGKHEEKQDEHGFVSRCFTRKYTLPPGVDPTAVTSSLSPDGILTVE 83 (86)
T ss_pred eEEEcCCeEEEEEECCCCCHHHEEEEEECCEEEEEEEECcCcCCCCEEEEEEEEEEECCCCCCHHHcEEEECCCCeEEEE
Confidence 68999999999999999999999999999999999875421 01 24777889999999999999997 8888887
Q ss_pred EE
Q psy5485 277 LA 278 (384)
Q Consensus 277 Lk 278 (384)
|.
T Consensus 84 lP 85 (86)
T cd06475 84 AP 85 (86)
T ss_pred ec
Confidence 63
No 32
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=97.03 E-value=0.0039 Score=50.97 Aligned_cols=75 Identities=11% Similarity=0.090 Sum_probs=62.9
Q ss_pred EEecCCEEEEEEEeCCCCCCCcEEEEeccEEEEEEEeCCC-CC-----CeeEEeeccCCCcCCCCceEEE-eCceEEEEE
Q psy5485 205 WYQTEKQVVVDALIKQAKAETTQVNIDQNSVDIVVTLDPS-SS-----TQHRLHLNLYRPIDPTTSSFRI-LGTKIEVKL 277 (384)
Q Consensus 205 WyQT~d~VtItI~lKgV~kEdVkVefte~sLsVsi~~~~a-~g-----k~Y~l~IeLf~eIdPeeSk~KV-t~~KIEI~L 277 (384)
-+.+++.+.|.+.++|+.++++.|++.++.|.|++..... .+ ..|.-.+.|...|++++-+..+ ..+.+.|+|
T Consensus 5 v~e~~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~Vd~~~i~A~~~~dGvL~I~~ 84 (86)
T cd06497 5 VRSDRDKFTIYLDVKHFSPEDLTVKVLDDYVEIHGKHSERQDDHGYISREFHRRYRLPSNVDQSAITCSLSADGMLTFSG 84 (86)
T ss_pred EEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHeEEEeCCCCEEEEEe
Confidence 3678999999999999999999999999999999864211 11 2366788999999999999998 689999999
Q ss_pred Ec
Q psy5485 278 AK 279 (384)
Q Consensus 278 kK 279 (384)
.|
T Consensus 85 PK 86 (86)
T cd06497 85 PK 86 (86)
T ss_pred cC
Confidence 86
No 33
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=97.00 E-value=0.0044 Score=50.53 Aligned_cols=74 Identities=14% Similarity=0.141 Sum_probs=62.4
Q ss_pred EecCCEEEEEEEeCCCCCCCcEEEEeccEEEEEEEeCCCCC---CeeEEeeccCCCcCCCCceEEE-eCceEEEEEEc
Q psy5485 206 YQTEKQVVVDALIKQAKAETTQVNIDQNSVDIVVTLDPSSS---TQHRLHLNLYRPIDPTTSSFRI-LGTKIEVKLAK 279 (384)
Q Consensus 206 yQT~d~VtItI~lKgV~kEdVkVefte~sLsVsi~~~~a~g---k~Y~l~IeLf~eIdPeeSk~KV-t~~KIEI~LkK 279 (384)
..+++.+.|.+.++|+.++++.|++.++.|+|++.-....+ ..|.-.+.|-..|+++..+.++ ..+.+.|++.+
T Consensus 4 ~e~~~~~~v~~dlpG~~pedi~V~v~~~~L~I~ger~~~~~~~~g~F~R~~~LP~~vd~e~v~A~l~~~GvL~I~~~~ 81 (81)
T cd06479 4 KTLGDTYQFAVDVSDFSPEDIIVTTSNNQIEVHAEKLASDGTVMNTFTHKCQLPEDVDPTSVSSSLGEDGTLTIKARR 81 (81)
T ss_pred cCcCCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEeccCCCEEEEEEEEEECCCCcCHHHeEEEecCCCEEEEEecC
Confidence 56789999999999999999999999999999986432111 3677889999999999988897 88999998864
No 34
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=96.97 E-value=0.0038 Score=50.06 Aligned_cols=70 Identities=16% Similarity=0.210 Sum_probs=59.6
Q ss_pred CEEEEEEEeCCCCCCCcEEEEeccEEEEEEEeCCCC------CCeeEEeeccCCCcCCCCceEEEeC-ceEEEEEEc
Q psy5485 210 KQVVVDALIKQAKAETTQVNIDQNSVDIVVTLDPSS------STQHRLHLNLYRPIDPTTSSFRILG-TKIEVKLAK 279 (384)
Q Consensus 210 d~VtItI~lKgV~kEdVkVefte~sLsVsi~~~~a~------gk~Y~l~IeLf~eIdPeeSk~KVt~-~KIEI~LkK 279 (384)
+.+.|.+.++|+.++++.|.+.++.|.|++...... ...|...+.|-..|+++..+.++.. +.++|++.|
T Consensus 7 ~~~~v~~dlpG~~~edI~v~v~~~~L~I~g~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~A~~~~~GvL~I~~Pk 83 (83)
T cd06526 7 EKFQVTLDVKGFKPEELKVKVSDNKLVVEGKHEEREDEHGYVSREFTRRYQLPEGVDPDSVTSSLSSDGVLTIEAPK 83 (83)
T ss_pred eeEEEEEECCCCCHHHcEEEEECCEEEEEEEEeeeccCCCEEEEEEEEEEECCCCCChHHeEEEeCCCcEEEEEecC
Confidence 588999999999999999999999999998654211 1367788999999999998999998 999999876
No 35
>PRK10743 heat shock protein IbpA; Provisional
Probab=96.92 E-value=0.01 Score=52.88 Aligned_cols=78 Identities=8% Similarity=0.046 Sum_probs=65.0
Q ss_pred CcEEEEe-cCCEEEEEEEeCCCCCCCcEEEEeccEEEEEEEeCCC-C----------CCeeEEeeccCCCcCCCCceEEE
Q psy5485 201 IRHNWYQ-TEKQVVVDALIKQAKAETTQVNIDQNSVDIVVTLDPS-S----------STQHRLHLNLYRPIDPTTSSFRI 268 (384)
Q Consensus 201 ~RyDWyQ-T~d~VtItI~lKgV~kEdVkVefte~sLsVsi~~~~a-~----------gk~Y~l~IeLf~eIdPeeSk~KV 268 (384)
+.++-++ +++.+.|.+.++|+.++++.|+++++.|+|++..... . ...|.-.+.|-..|++++ .+.
T Consensus 35 p~~di~ee~~~~~~v~aelPGv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~~~LP~~Vd~~~--A~~ 112 (137)
T PRK10743 35 PPYNVELVDENHYRIAIAVAGFAESELEITAQDNLLVVKGAHADEQKERTYLYQGIAERNFERKFQLAENIHVRG--ANL 112 (137)
T ss_pred CcEEEEEcCCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEECccccCCcEEEEEEECCEEEEEEECCCCcccCc--CEE
Confidence 4488894 8999999999999999999999999999999864321 0 125677889999999984 788
Q ss_pred eCceEEEEEEcC
Q psy5485 269 LGTKIEVKLAKT 280 (384)
Q Consensus 269 t~~KIEI~LkKk 280 (384)
..+.+.|+|.|.
T Consensus 113 ~dGVL~I~lPK~ 124 (137)
T PRK10743 113 VNGLLYIDLERV 124 (137)
T ss_pred eCCEEEEEEeCC
Confidence 999999999996
No 36
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=96.88 E-value=0.012 Score=48.04 Aligned_cols=75 Identities=8% Similarity=0.135 Sum_probs=61.0
Q ss_pred EEEEecC-CEEEEEEEeCCCCCCCcEEEEeccEEEEEEEeCCCC------------CCeeEEeeccCCCcCCCCceEEEe
Q psy5485 203 HNWYQTE-KQVVVDALIKQAKAETTQVNIDQNSVDIVVTLDPSS------------STQHRLHLNLYRPIDPTTSSFRIL 269 (384)
Q Consensus 203 yDWyQT~-d~VtItI~lKgV~kEdVkVefte~sLsVsi~~~~a~------------gk~Y~l~IeLf~eIdPeeSk~KVt 269 (384)
++-++++ +...|.+.++|+.++++.|.+.++.|.|++...... ...|.-.+.|-..|+.+ +....
T Consensus 3 ~di~e~~~~~~~v~~~lPG~~kedi~v~~~~~~L~I~g~~~~~~~~~~~~~~~e~~~g~f~R~~~LP~~vd~~--~A~~~ 80 (90)
T cd06470 3 YNIEKTGENNYRITLAVAGFSEDDLEIEVENNQLTVTGKKADEENEEREYLHRGIAKRAFERSFNLADHVKVK--GAELE 80 (90)
T ss_pred eeeEEcCCCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEcccccCCCcEEEEEEeceEEEEEEECCCCceEC--eeEEe
Confidence 5667875 899999999999999999999999999997543211 23577788999999886 67889
Q ss_pred CceEEEEEEc
Q psy5485 270 GTKIEVKLAK 279 (384)
Q Consensus 270 ~~KIEI~LkK 279 (384)
.+.+.|+|.+
T Consensus 81 ~GvL~I~l~~ 90 (90)
T cd06470 81 NGLLTIDLER 90 (90)
T ss_pred CCEEEEEEEC
Confidence 9999999864
No 37
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=96.87 E-value=0.0072 Score=49.30 Aligned_cols=74 Identities=12% Similarity=0.140 Sum_probs=61.7
Q ss_pred ecCCEEEEEEEeCCCCCCCcEEEEeccEEEEEEEeCCC-CC-----CeeEEeeccCCCcCCCCceEEEe-CceEEEEEEc
Q psy5485 207 QTEKQVVVDALIKQAKAETTQVNIDQNSVDIVVTLDPS-SS-----TQHRLHLNLYRPIDPTTSSFRIL-GTKIEVKLAK 279 (384)
Q Consensus 207 QT~d~VtItI~lKgV~kEdVkVefte~sLsVsi~~~~a-~g-----k~Y~l~IeLf~eIdPeeSk~KVt-~~KIEI~LkK 279 (384)
-+++...|.+.++|+.++++.|.+.++.|+|++..... .+ ..|.-.+.|-..|++++-+.++. .+.+.|+|.|
T Consensus 4 ~~~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~~~dGvL~I~lPk 83 (84)
T cd06498 4 LEKDKFSVNLDVKHFSPEELKVKVLGDFIEIHGKHEERQDEHGFISREFQRKYRIPADVDPLTITSSLSPDGVLTVCGPR 83 (84)
T ss_pred eCCceEEEEEECCCCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHcEEEeCCCCEEEEEEeC
Confidence 45788999999999999999999999999999864310 01 13777889999999999999996 9999999988
Q ss_pred C
Q psy5485 280 T 280 (384)
Q Consensus 280 k 280 (384)
+
T Consensus 84 ~ 84 (84)
T cd06498 84 K 84 (84)
T ss_pred C
Confidence 4
No 38
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=96.67 E-value=0.01 Score=48.10 Aligned_cols=73 Identities=12% Similarity=0.150 Sum_probs=60.3
Q ss_pred ecCCEEEEEEEeCCCCCCCcEEEEeccEEEEEEEeCCC-CC-----CeeEEeeccCCCcCCCCceEEE-eCceEEEEEEc
Q psy5485 207 QTEKQVVVDALIKQAKAETTQVNIDQNSVDIVVTLDPS-SS-----TQHRLHLNLYRPIDPTTSSFRI-LGTKIEVKLAK 279 (384)
Q Consensus 207 QT~d~VtItI~lKgV~kEdVkVefte~sLsVsi~~~~a-~g-----k~Y~l~IeLf~eIdPeeSk~KV-t~~KIEI~LkK 279 (384)
.+++.+.|.+.++|+.++++.|++.++.|.|++..... .+ ..|.-.+.|-..|++++.+..+ ..+.+.|++.|
T Consensus 4 ~~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~vd~~~i~A~~~~dGvL~I~~PK 83 (83)
T cd06478 4 LDKDRFSVNLDVKHFSPEELSVKVLGDFVEIHGKHEERQDEHGFISREFHRRYRLPPGVDPAAITSSLSADGVLTISGPR 83 (83)
T ss_pred ecCceEEEEEECCCCCHHHeEEEEECCEEEEEEEEceEcCCCCEEEEEEEEEEECCCCcChHHeEEEECCCCEEEEEecC
Confidence 46789999999999999999999999999998854310 11 2367788999999999888888 58999999876
No 39
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=96.62 E-value=0.019 Score=51.62 Aligned_cols=78 Identities=8% Similarity=0.164 Sum_probs=64.4
Q ss_pred CcEEEEe-cCCEEEEEEEeCCCCCCCcEEEEeccEEEEEEEeCCC-C----------CCeeEEeeccCCCcCCCCceEEE
Q psy5485 201 IRHNWYQ-TEKQVVVDALIKQAKAETTQVNIDQNSVDIVVTLDPS-S----------STQHRLHLNLYRPIDPTTSSFRI 268 (384)
Q Consensus 201 ~RyDWyQ-T~d~VtItI~lKgV~kEdVkVefte~sLsVsi~~~~a-~----------gk~Y~l~IeLf~eIdPeeSk~KV 268 (384)
|.++=++ +++.+.|++.++|++++++.|+++++.|+|++..... . ...|.-.+.|-..|+++ +.++
T Consensus 33 P~vdI~e~~~~~y~v~adlPGv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~f~LP~~vd~~--~A~~ 110 (142)
T PRK11597 33 PPYNIEKSDDNHYRITLALAGFRQEDLDIQLEGTRLTVKGTPEQPEKEVKWLHQGLVNQPFSLSFTLAENMEVS--GATF 110 (142)
T ss_pred CcEEEEEcCCCEEEEEEEeCCCCHHHeEEEEECCEEEEEEEEccccCCCcEEEEEEeCcEEEEEEECCCCcccC--cCEE
Confidence 4478887 4679999999999999999999999999999864211 1 13577788999999998 5788
Q ss_pred eCceEEEEEEcC
Q psy5485 269 LGTKIEVKLAKT 280 (384)
Q Consensus 269 t~~KIEI~LkKk 280 (384)
..+-+.|+|.|.
T Consensus 111 ~nGVL~I~lPK~ 122 (142)
T PRK11597 111 VNGLLHIDLIRN 122 (142)
T ss_pred cCCEEEEEEecc
Confidence 999999999996
No 40
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=96.14 E-value=0.026 Score=46.04 Aligned_cols=72 Identities=8% Similarity=0.054 Sum_probs=59.2
Q ss_pred cCCEEEEEEEeCCCCCCCcEEEEeccEEEEEEEeCCC-CC-----CeeEEeeccCCCcCCCCceEEEe-CceEEEEEEc
Q psy5485 208 TEKQVVVDALIKQAKAETTQVNIDQNSVDIVVTLDPS-SS-----TQHRLHLNLYRPIDPTTSSFRIL-GTKIEVKLAK 279 (384)
Q Consensus 208 T~d~VtItI~lKgV~kEdVkVefte~sLsVsi~~~~a-~g-----k~Y~l~IeLf~eIdPeeSk~KVt-~~KIEI~LkK 279 (384)
.++...|.+.++|+.+++++|++.++.|.|++..... .+ ..|.-.+.|-..|++++-+.+.. .+.+.|+|.|
T Consensus 5 ~~d~y~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~v~A~~~~dGvL~I~~Pr 83 (83)
T cd06476 5 EDDKYQVFLDVCHFTPDEITVRTVDNLLEVSARHPQRMDRHGFVSREFTRTYILPMDVDPLLVRASLSHDGILCIQAPR 83 (83)
T ss_pred cCCeEEEEEEcCCCCHHHeEEEEECCEEEEEEEEcceecCCCEEEEEEEEEEECCCCCChhhEEEEecCCCEEEEEecC
Confidence 4577889999999999999999999999998864211 11 24666789999999999999996 8999999875
No 41
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=95.74 E-value=0.051 Score=44.54 Aligned_cols=71 Identities=8% Similarity=0.160 Sum_probs=57.5
Q ss_pred cCCEEEEEEEeCCCCCCCcEEEEeccEEEEEEEeCCC---C-C------CeeEEeeccCCCcCCCCceEEE-eCceEEEE
Q psy5485 208 TEKQVVVDALIKQAKAETTQVNIDQNSVDIVVTLDPS---S-S------TQHRLHLNLYRPIDPTTSSFRI-LGTKIEVK 276 (384)
Q Consensus 208 T~d~VtItI~lKgV~kEdVkVefte~sLsVsi~~~~a---~-g------k~Y~l~IeLf~eIdPeeSk~KV-t~~KIEI~ 276 (384)
..+.+.|.+.++|+.++++.|.+.++.|.|++..... + + ..|.-.+.|-..|+++..+..+ ..+.+.|.
T Consensus 5 ~~d~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~F~R~~~LP~~Vd~~~i~A~~~~dGvL~I~ 84 (87)
T cd06481 5 GKEGFSLKLDVRGFSPEDLSVRVDGRKLVVTGKREKKNEDEKGSFSYEYQEFVREAQLPEHVDPEAVTCSLSPSGHLHIR 84 (87)
T ss_pred ccceEEEEEECCCCChHHeEEEEECCEEEEEEEEeeecccCCCcEEEEeeEEEEEEECCCCcChHHeEEEeCCCceEEEE
Confidence 4678999999999999999999999999998864211 0 1 3466788999999999888888 77888887
Q ss_pred EE
Q psy5485 277 LA 278 (384)
Q Consensus 277 Lk 278 (384)
+.
T Consensus 85 ~P 86 (87)
T cd06481 85 AP 86 (87)
T ss_pred cC
Confidence 63
No 42
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=94.72 E-value=0.14 Score=42.37 Aligned_cols=68 Identities=9% Similarity=0.132 Sum_probs=54.4
Q ss_pred cCCEEEEEEEeCCCCCCCcEEEEeccEEEEEEEeCCC----CC-----CeeEEeeccCCCcCCCCceEEEeCc-eEEE
Q psy5485 208 TEKQVVVDALIKQAKAETTQVNIDQNSVDIVVTLDPS----SS-----TQHRLHLNLYRPIDPTTSSFRILGT-KIEV 275 (384)
Q Consensus 208 T~d~VtItI~lKgV~kEdVkVefte~sLsVsi~~~~a----~g-----k~Y~l~IeLf~eIdPeeSk~KVt~~-KIEI 275 (384)
.++.++|++.++|+.++++.|.+.++.|+|++..... +. ..|.-.+.|-..|++++-+.++..+ .|.|
T Consensus 6 ~~~~~~v~adlPG~~kedI~V~v~~~~L~I~ger~~~~e~~~~~er~~g~F~R~f~LP~~Vd~d~i~A~~~~~~~l~i 83 (87)
T cd06482 6 DSSNVLASVDVCGFEPDQVKVKVKDGKVQVSAERENRYDCLGSKKYSYMNICKEFSLPPGVDEKDVTYSYGLGSVVKI 83 (87)
T ss_pred cCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecccccCCccEEEEEEEEEEEECCCCcChHHcEEEEcCCCEEEE
Confidence 4678999999999999999999999999999865321 11 2355678999999999988888776 6665
No 43
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=94.70 E-value=0.24 Score=40.64 Aligned_cols=71 Identities=8% Similarity=-0.024 Sum_probs=56.2
Q ss_pred ecCCEEEEEEEeCCCCCCCcEEEEeccEEEEEEEeCCC---CC---CeeEEeeccCCCcCCCCceEEE-eCceEEEEE
Q psy5485 207 QTEKQVVVDALIKQAKAETTQVNIDQNSVDIVVTLDPS---SS---TQHRLHLNLYRPIDPTTSSFRI-LGTKIEVKL 277 (384)
Q Consensus 207 QT~d~VtItI~lKgV~kEdVkVefte~sLsVsi~~~~a---~g---k~Y~l~IeLf~eIdPeeSk~KV-t~~KIEI~L 277 (384)
.+++...|.+.++|+.+++++|.+.++.|+|++..... .+ ..|.-++.|...|+++..+.+. ..+.+.|.-
T Consensus 4 e~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~ge~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~v~A~~~~dGvL~I~~ 81 (83)
T cd06477 4 EGKPMFQILLDVVQFRPEDIIIQVFEGWLLIKGQHGVRMDEHGFISRSFTRQYQLPDGVEHKDLSAMLCHDGILVVET 81 (83)
T ss_pred cCCceEEEEEEcCCCCHHHeEEEEECCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcchheEEEEEcCCCEEEEEe
Confidence 46788999999999999999999999999999865321 11 2466678999999999888776 577777653
No 44
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=94.45 E-value=0.47 Score=46.32 Aligned_cols=65 Identities=17% Similarity=0.322 Sum_probs=54.7
Q ss_pred CCEEEEEEEeCCC-CCCCcEEEEeccEEEEEEEeCCCCCCeeEEeeccCCCcCCCCceEEEeC--ceEEEEEE
Q psy5485 209 EKQVVVDALIKQA-KAETTQVNIDQNSVDIVVTLDPSSSTQHRLHLNLYRPIDPTTSSFRILG--TKIEVKLA 278 (384)
Q Consensus 209 ~d~VtItI~lKgV-~kEdVkVefte~sLsVsi~~~~a~gk~Y~l~IeLf~eIdPeeSk~KVt~--~KIEI~Lk 278 (384)
.+.+.|.|.++++ ...++.++++++.|.|... +..|.|.|.|-.+|+++.++.+... ..+.|+|.
T Consensus 260 p~~lvv~i~LP~~~s~~~i~LdV~~~~l~l~~~-----~~~y~L~l~LP~~V~~~~~~Akf~~~~~~L~vtlp 327 (328)
T PF08190_consen 260 PEELVVEIELPGVESASDIDLDVSEDRLSLSSP-----KPKYRLDLPLPYPVDEDNGKAKFDKKTKTLTVTLP 327 (328)
T ss_pred CceEEEEEECCCcCccceeEEEEeCCEEEEEeC-----CCceEEEccCCCcccCCCceEEEccCCCEEEEEEE
Confidence 6899999999998 6889999999999988873 3379999999999999988766544 57888774
No 45
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=92.83 E-value=1.6 Score=40.96 Aligned_cols=79 Identities=16% Similarity=0.297 Sum_probs=59.6
Q ss_pred CCCcEEEEecCC-EEEEEEEeCCCCCCC-cEEEEeccEEEEEEEeCCCCCCeeEEeeccCCCcCCCCceEEEeCceEEEE
Q psy5485 199 QNIRHNWYQTEK-QVVVDALIKQAKAET-TQVNIDQNSVDIVVTLDPSSSTQHRLHLNLYRPIDPTTSSFRILGTKIEVK 276 (384)
Q Consensus 199 ~k~RyDWyQT~d-~VtItI~lKgV~kEd-VkVefte~sLsVsi~~~~a~gk~Y~l~IeLf~eIdPeeSk~KVt~~KIEI~ 276 (384)
..+.++=.+.++ .++|...++||..++ +.|.+..+...+.+.. +..|.-.|.|-.+ .++.-+..+.++.+||+
T Consensus 90 ~~~~vdtre~dDge~~VvAdLPGVs~dd~idV~l~~d~~~L~i~~----~~~~~krv~L~~~-~~e~~~~t~nNgILEIr 164 (177)
T PF05455_consen 90 ESIHVDTRERDDGELVVVADLPGVSDDDAIDVTLDDDEGALTIRV----GEKYLKRVALPWP-DPEITSATFNNGILEIR 164 (177)
T ss_pred ceeeeeeEecCCCcEEEEEeCCCCCcccceeeEeecCCceEEEec----CCceEeeEecCCC-ccceeeEEEeCceEEEE
Confidence 345566677777 788999999998777 8888886655555543 3346678888888 46666889999999999
Q ss_pred EEcCCC
Q psy5485 277 LAKTSD 282 (384)
Q Consensus 277 LkKke~ 282 (384)
|.+.+.
T Consensus 165 i~~~~~ 170 (177)
T PF05455_consen 165 IRRTEE 170 (177)
T ss_pred EeecCC
Confidence 999763
No 46
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=88.80 E-value=2.5 Score=35.43 Aligned_cols=70 Identities=14% Similarity=0.131 Sum_probs=54.8
Q ss_pred cCCEEEEEEEeCCCCCCCcEEEEeccEEEEEEEeCCC--C----CCeeEEeeccCCCcCCCCceEEEe-CceEEEEE
Q psy5485 208 TEKQVVVDALIKQAKAETTQVNIDQNSVDIVVTLDPS--S----STQHRLHLNLYRPIDPTTSSFRIL-GTKIEVKL 277 (384)
Q Consensus 208 T~d~VtItI~lKgV~kEdVkVefte~sLsVsi~~~~a--~----gk~Y~l~IeLf~eIdPeeSk~KVt-~~KIEI~L 277 (384)
+++.-.|.+.+.+..++++.|.+.++.|.|++..... . ...|...+.|-..|+++.-+..+. .+.+.|.+
T Consensus 13 ~~~~f~v~ldv~gF~pEDL~Vkv~~~~L~V~Gkh~~~~~e~g~~~r~F~R~~~LP~~Vd~~~v~s~l~~dGvL~Iea 89 (91)
T cd06480 13 SSEPWKVCVNVHSFKPEELTVKTKDGFVEVSGKHEEQQKEGGIVSKNFTKKIQLPPEVDPVTVFASLSPEGLLIIEA 89 (91)
T ss_pred CCCcEEEEEEeCCCCHHHcEEEEECCEEEEEEEECcccCCCCEEEEEEEEEEECCCCCCchhEEEEeCCCCeEEEEc
Confidence 4556678899999999999999999999999865421 1 124666789999999998888887 66777754
No 47
>KOG3591|consensus
Probab=46.47 E-value=1.2e+02 Score=28.31 Aligned_cols=74 Identities=18% Similarity=0.236 Sum_probs=57.3
Q ss_pred cCCEEEEEEEeCCCCCCCcEEEEeccEEEEEEEeCCC-C-----CCeeEEeeccCCCcCCCCceEEEeC-ceEEEEEEcC
Q psy5485 208 TEKQVVVDALIKQAKAETTQVNIDQNSVDIVVTLDPS-S-----STQHRLHLNLYRPIDPTTSSFRILG-TKIEVKLAKT 280 (384)
Q Consensus 208 T~d~VtItI~lKgV~kEdVkVefte~sLsVsi~~~~a-~-----gk~Y~l~IeLf~eIdPeeSk~KVt~-~KIEI~LkKk 280 (384)
+++...|.+.+....|+++.|...++.|.|.++.... + ...|.-.+.|-..|+|+.-+-.+.+ +.+.|...|.
T Consensus 70 ~~~~F~V~lDV~~F~PeEl~Vk~~~~~l~V~gkHeer~d~~G~v~R~F~R~y~LP~~vdp~~V~S~LS~dGvLtI~ap~~ 149 (173)
T KOG3591|consen 70 DKDKFEVNLDVHQFKPEELKVKTDDNTLEVEGKHEEKEDEHGYVSRSFVRKYLLPEDVDPTSVTSTLSSDGVLTIEAPKP 149 (173)
T ss_pred CCCcEEEEEEcccCcccceEEEeCCCEEEEEeeeccccCCCCeEEEEEEEEecCCCCCChhheEEeeCCCceEEEEccCC
Confidence 5667778888998899999999999999998875431 1 1346667899999999987777766 5788887775
Q ss_pred C
Q psy5485 281 S 281 (384)
Q Consensus 281 e 281 (384)
.
T Consensus 150 ~ 150 (173)
T KOG3591|consen 150 P 150 (173)
T ss_pred C
Confidence 4
No 48
>KOG0710|consensus
Probab=41.63 E-value=54 Score=30.81 Aligned_cols=82 Identities=12% Similarity=0.156 Sum_probs=62.3
Q ss_pred CcEEE--EecCCEEEEEEEeCCCCCCCcEEEEeccE-EEEEEEeCCCC---------------CCeeEEeeccCCCcCCC
Q psy5485 201 IRHNW--YQTEKQVVVDALIKQAKAETTQVNIDQNS-VDIVVTLDPSS---------------STQHRLHLNLYRPIDPT 262 (384)
Q Consensus 201 ~RyDW--yQT~d~VtItI~lKgV~kEdVkVefte~s-LsVsi~~~~a~---------------gk~Y~l~IeLf~eIdPe 262 (384)
.+..| .++.+...+.+.++|+..++++|++.+.. +.++.....-. ...|.-.+.|-..|+.+
T Consensus 83 ~~~~~~v~e~~~~~~~~~~~Pgl~ke~iKv~~~~~~~l~isGe~~~e~e~~~~~~~~~~~E~~~g~F~r~~~lPenv~~d 162 (196)
T KOG0710|consen 83 ARVPWDVKESPDAHEFKVDLPGLKKEDIKVEVEDEKVLTISGERKKEEEESGSGKKWKRVERKLGKFKRRFELPENVDVD 162 (196)
T ss_pred ccCCcccccCCCceEEEeeCCCCCchhceEEeccCcEEEEecccccccccccCCccceeehhcccceEeeecCCccccHH
Confidence 45667 78888899999999999999999999984 77776443210 11355567888888888
Q ss_pred CceEEEeCceEEEEEEcCCC
Q psy5485 263 TSSFRILGTKIEVKLAKTSD 282 (384)
Q Consensus 263 eSk~KVt~~KIEI~LkKke~ 282 (384)
+-+..+..+-+.|++.|...
T Consensus 163 ~ikA~~~nGVL~VvvpK~~~ 182 (196)
T KOG0710|consen 163 EIKAEMENGVLTVVVPKLEP 182 (196)
T ss_pred HHHHHhhCCeEEEEEecccc
Confidence 77888888888888888664
No 49
>PF14098 SSPI: Small, acid-soluble spore protein I
Probab=37.12 E-value=39 Score=27.12 Aligned_cols=28 Identities=18% Similarity=0.401 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy5485 324 AALNELFQKIYGEGSDEVRKAMNKSFLE 351 (384)
Q Consensus 324 aaLn~lFKkIY~~gDDDtKRAMmKSf~E 351 (384)
.+|.-||..+|.++|++.|..|+.+..+
T Consensus 36 PGLGVlFE~~W~~~~~~ek~~m~~~l~~ 63 (65)
T PF14098_consen 36 PGLGVLFEVIWKNSDESEKQEMVNTLEQ 63 (65)
T ss_pred CchHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 3788999999999999999999987653
No 50
>KOG3493|consensus
Probab=33.50 E-value=16 Score=29.54 Aligned_cols=26 Identities=46% Similarity=0.663 Sum_probs=17.4
Q ss_pred eeeehhhhhccC--Cccc----cchhHHHHHh
Q psy5485 101 IEVCCIDRLAKY--PKCR----FGTRRKLVKL 126 (384)
Q Consensus 101 ~~~~~~~~~~~~--~~~~----~~~~~~~~~~ 126 (384)
|||||-|||-|- ++|. .|--.||.+.
T Consensus 2 iev~~nDrLGKKVRvKCn~dDtiGD~KKliaa 33 (73)
T KOG3493|consen 2 IEVVLNDRLGKKVRVKCNTDDTIGDLKKLIAA 33 (73)
T ss_pred ceehhhhhcCceEEEEeCCcccccCHHHHHHH
Confidence 899999999874 4564 3444555543
No 51
>PF06543 Lac_bphage_repr: Lactococcus bacteriophage repressor; InterPro: IPR009498 This entry represents the C terminus of various Lactococcus bacteriophage repressor proteins.
Probab=30.21 E-value=32 Score=26.19 Aligned_cols=10 Identities=50% Similarity=0.770 Sum_probs=8.4
Q ss_pred CCCcchhhhh
Q psy5485 305 KRDWDKVAQQ 314 (384)
Q Consensus 305 kkDWDK~~dE 314 (384)
++|||+|+.-
T Consensus 17 kvdWd~wvSf 26 (49)
T PF06543_consen 17 KVDWDKWVSF 26 (49)
T ss_pred ccchHHheee
Confidence 7899999853
No 52
>TIGR03092 SASP_sspI small, acid-soluble spore protein I. This protein family is restricted to a subset of endospore-forming bacteria such as Bacillus subtilis, all of which are in the Firmicutes (low-GC Gram-positive) lineage. It is a minor SASP (small, acid-soluble spore protein) designated SspI. The gene in Bacillus subtilis previously was designated ysfA.
Probab=29.94 E-value=54 Score=26.39 Aligned_cols=28 Identities=18% Similarity=0.418 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy5485 324 AALNELFQKIYGEGSDEVRKAMNKSFLE 351 (384)
Q Consensus 324 aaLn~lFKkIY~~gDDDtKRAMmKSf~E 351 (384)
.+|.-||..+|..+|+..|.+|+.+..+
T Consensus 35 PGLGVlFE~~W~~~~~~ek~~m~~~l~~ 62 (65)
T TIGR03092 35 PGLGVLFEAIWKHANEQEKDEMLETLEQ 62 (65)
T ss_pred CccHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3688999999999999999999987543
No 53
>KOG3480|consensus
Probab=26.20 E-value=18 Score=30.61 Aligned_cols=23 Identities=43% Similarity=0.720 Sum_probs=16.3
Q ss_pred Ccceeeehhhh-hccCCccccchhHHHH
Q psy5485 98 LSQIEVCCIDR-LAKYPKCRFGTRRKLV 124 (384)
Q Consensus 98 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 124 (384)
|.-=|-||||| .+|| +..|+++-
T Consensus 49 LtKGE~~CiDRCVaKy----~~~n~~vG 72 (90)
T KOG3480|consen 49 LTKGESVCIDRCVAKY----LDVNEKVG 72 (90)
T ss_pred ccCchhhHHHHHHHHH----HHHHHHHH
Confidence 56678999999 5677 44566554
No 54
>PRK02955 small acid-soluble spore protein SspI; Provisional
Probab=24.68 E-value=70 Score=25.95 Aligned_cols=27 Identities=19% Similarity=0.388 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy5485 324 AALNELFQKIYGEGSDEVRKAMNKSFL 350 (384)
Q Consensus 324 aaLn~lFKkIY~~gDDDtKRAMmKSf~ 350 (384)
.+|.-||..+|..+|+..|.+|+.+..
T Consensus 38 PGLGVlFE~~W~~~~~~ek~~m~~~l~ 64 (68)
T PRK02955 38 PGLGVLFEVIWKNADENEKDEMLETLE 64 (68)
T ss_pred CcchhHHHHHHHhcCHHHHHHHHHHHH
Confidence 368899999999999999999998754
No 55
>PF09829 DUF2057: Uncharacterized protein conserved in bacteria (DUF2057); InterPro: IPR018635 The proteins in this entry are functionally uncharacterised.
Probab=24.33 E-value=53 Score=30.19 Aligned_cols=24 Identities=33% Similarity=0.339 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHH
Q psy5485 324 AALNELFQKIYGEGSDEVRKAMNK 347 (384)
Q Consensus 324 aaLn~lFKkIY~~gDDDtKRAMmK 347 (384)
.....|+|..|..||+++|++.++
T Consensus 165 ~~~~~~Lq~wy~qAs~~eRk~F~~ 188 (189)
T PF09829_consen 165 SEALQMLQYWYLQASKEERKAFLK 188 (189)
T ss_pred ccHHHHHHHHHHhCCHHHHHHHhc
Confidence 346789999999999999999874
No 56
>PF04818 CTD_bind: RNA polymerase II-binding domain.; InterPro: IPR006903 This entry represents a conserved region found in a number of uncharacterised eukaryotic proteins.; PDB: 2L0I_A 2KM4_A 3D9I_B 3D9N_B 3D9O_A 3D9P_B 3D9K_A 3D9M_A 3D9J_A 3D9L_A ....
Probab=23.69 E-value=97 Score=23.40 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=20.2
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHH
Q psy5485 325 ALNELFQKIYGEGSDEVRKAMNKS 348 (384)
Q Consensus 325 aLn~lFKkIY~~gDDDtKRAMmKS 348 (384)
.|..+|..+|..+|+++++.|.+=
T Consensus 30 ~l~~~~~~~~~~~~~~~~~kv~rl 53 (64)
T PF04818_consen 30 VLPDAFAHAYKNVDPEVRKKVQRL 53 (64)
T ss_dssp CHHHHHHHHCCCS-HHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHH
Confidence 578899999999999999988764
No 57
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=22.48 E-value=1.8e+02 Score=18.89 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=18.8
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHH
Q psy5485 327 NELFQKIYGEGSDEVRKAMNKSFL 350 (384)
Q Consensus 327 n~lFKkIY~~gDDDtKRAMmKSf~ 350 (384)
...+.++..|-+++.|.|...++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~ 25 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLG 25 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHH
Confidence 456778889999999999888765
Done!