RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5485
(384 letters)
>gnl|CDD|215568 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1;
Provisional.
Length = 356
Score = 152 bits (385), Expect = 1e-42
Identities = 78/215 (36%), Positives = 111/215 (51%), Gaps = 24/215 (11%)
Query: 189 TAPPPPTPTVQNIRHNWYQTEKQVVVDALIKQAKAETTQVNIDQN--SVDIVVTLDPSSS 246
A P P+ RH +YQ ++VVV K AE V+ + SV I V P
Sbjct: 145 DATPVVPPSKPKYRHEFYQKPEEVVVTVFAKGVPAENVNVDFGEQILSVVIEV---PGED 201
Query: 247 TQHRLHLNLYRPIDPTTSSFRILGTKIEVKLAKTSDERWSDLEAKEETKA---------- 296
H L L+ I P + +L TKIE++LAK W+ LE +
Sbjct: 202 AYH-LQPRLFGKIIPDKCKYEVLSTKIEIRLAKAEPITWASLEYGKGPAVLPKPNVSSEV 260
Query: 297 ---PSAPKT-PYKRDWDKVAQQIE----DEKKEGEAALNELFQKIYGEGSDEVRKAMNKS 348
P+ P + K DWDK+ +++ DEK +G+AALN+ F++IY ++ R+AM KS
Sbjct: 261 SQRPAYPSSKKKKDDWDKLEAEVKKEEKDEKLDGDAALNKFFREIYQNADEDTRRAMMKS 320
Query: 349 FLESGGTVLSTNWDEVKRSTVDIKPPEGLEYKKWD 383
F+ES GTVLSTNW EV ++ PP+G+E KKW+
Sbjct: 321 FVESNGTVLSTNWKEVGSKKIEGSPPDGMELKKWE 355
>gnl|CDD|218373 pfam05002, SGS, SGS domain. This domain was thought to be unique
to the SGT1-like proteins, but is also found in
calcyclin binding proteins.
Length = 78
Score = 115 bits (291), Expect = 3e-32
Identities = 44/78 (56%), Positives = 61/78 (78%)
Query: 305 KRDWDKVAQQIEDEKKEGEAALNELFQKIYGEGSDEVRKAMNKSFLESGGTVLSTNWDEV 364
K+DWDK+ ++ ED++++ AALN F+K+Y +G D+ ++AM KSF ES GTVLSTNWDEV
Sbjct: 1 KKDWDKLTKEDEDDEEDPSAALNNFFKKLYKDGDDDTKRAMMKSFTESNGTVLSTNWDEV 60
Query: 365 KRSTVDIKPPEGLEYKKW 382
+ V+ KPPEG+E KKW
Sbjct: 61 GKKKVETKPPEGMEAKKW 78
>gnl|CDD|227422 COG5091, SGT1, Suppressor of G2 allele of skp1 and related proteins
[General function prediction only].
Length = 368
Score = 114 bits (286), Expect = 1e-28
Identities = 52/194 (26%), Positives = 93/194 (47%), Gaps = 14/194 (7%)
Query: 201 IRHNWYQTEKQVVVDALIKQAKAETTQVNIDQNSVDIVVTLDPSSSTQHRLHLNLYRPID 260
I +++ +T ++ E ++ N++ I + + ++LY+ +
Sbjct: 177 IAYDFSETSDTAIIFIYRPPVGDEQVSPVLEGNTLSISYQP-RRLRLWNDITISLYKEVY 235
Query: 261 PTTSSFRILGTKIEVKLAKTSDERWSDLE-----------AKEETKAPSAPKTPYKR-DW 308
P S + ++EV L K RW L + + + PK+ K+ DW
Sbjct: 236 PDIRSIKSFSKRVEVHLRKVEMVRWGGLNGRPADESSRLSDEGKNSDSATPKSSKKQDDW 295
Query: 309 DKVAQQIEDEKKEGEAALNELFQKIYGEGSDEVRKAMNKSFLESGGTVLSTNWDEVKRST 368
++ + +++ + ++ LFQK+Y D+ R+AM KSF ES GT LST+WD+VK T
Sbjct: 296 KELMVEDSGDEENP-SVMDSLFQKLYQRADDDTRRAMMKSFYESNGTALSTDWDDVKSKT 354
Query: 369 VDIKPPEGLEYKKW 382
+ +PPEG+E K W
Sbjct: 355 ITTEPPEGMEPKHW 368
>gnl|CDD|107223 cd06466, p23_CS_SGT1_like, p23_like domain similar to the
C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of
G2 allele of Skp1). Sgt1 interacts with multiple protein
complexes and has the features of a cochaperone. Human
(h) Sgt1 interacts with both Hsp70 and Hsp90, and has
been shown to bind Hsp90 through its CS domain.
Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both
core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin
ligase complexes. Sgt1 is required for pathogen
resistance in plants. ScSgt1 is needed for the G1/S and
G2/M cell-cycle transitions, and for assembly of the
core kinetochore complex (CBF3) via activation of Ctf13,
the F-box protein. Binding of Hsp82 (a yeast Hsp90
homologue) to ScSgt1, promotes the binding of Sgt1 to
Skp1 and of Skp1 to Ctf13. Some proteins in this group
have an SGT1-specific (SGS) domain at the extreme
C-terminus. The ScSgt1-SGS domain binds adenylate
cyclase. The hSgt1-SGS domain interacts with some S100
family proteins, and studies suggest that the
interaction of hSgt1 with Hsp90 and Hsp70 may be
regulated by S100A6 in a Ca2+ dependent fashion. This
group also includes the p23_like domains of Melusin and
NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR).
Melusin is a vertebrate protein which interacts with two
splice variants of beta1 integrin, and NCB5OR plays a
part in maintaining viable pancreatic beta cells.
Length = 84
Score = 88.0 bits (219), Expect = 9e-22
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 205 WYQTEKQVVVDALIKQAKAETTQVNIDQNSVDIVVTLDPSSSTQHRLHLNLYRPIDPTTS 264
WYQT+ V V K E +V ++ S+ + + L S ++L L+L+ PIDP S
Sbjct: 2 WYQTDTSVTVTIYAKNVDKEDVKVEFNEQSLSVSIILPGGSE--YQLELDLFGPIDPEQS 59
Query: 265 SFRILGTKIEVKLAKTSDERWSDLE 289
+L TK+E+ L K W LE
Sbjct: 60 KVSVLPTKVEITLKKAEPGSWPSLE 84
>gnl|CDD|107239 cd06489, p23_CS_hSgt1_like, p23_like domain similar to the
C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and
related proteins. hSgt1 is a co-chaperone which has been
shown to be elevated in HEp-2 cells as a result of
stress conditions such as heat shock. It interacts with
the heat shock proteins (HSPs) Hsp70 and Hsp90, and it
expression pattern is synchronized with these two Hsps.
The interaction with HSP90 has been shown to involve the
hSgt1_CS domain, and appears to be required for correct
kinetochore assembly and efficient cell division. Some
proteins in this subgroup contain a tetratricopeptide
repeat (TPR) HSP-binding domain N-terminal to this CS
domain, and most proteins in this subgroup contain a
Sgt1-specific (SGS) domain C-terminal to the CS domain.
The SGS domain interacts with some S100 family proteins.
Studies suggest that S100A6 modulates in a Ca2+
dependent manner the interactions of hSgt1 with Hsp90
and Hsp70. The yeast Sgt1 CS domain is not found in this
subgroup.
Length = 84
Score = 80.1 bits (198), Expect = 7e-19
Identities = 41/86 (47%), Positives = 52/86 (60%), Gaps = 2/86 (2%)
Query: 204 NWYQTEKQVVVDALIKQAKAETTQVNIDQNSVDIVVTLDPSSSTQHRLHLNLYRPIDPTT 263
+WYQTE QVV+ LIK K E V ++ + V L PS + + L L+L PI P
Sbjct: 1 DWYQTESQVVITILIKNVKPEDVSVEFEKRELSATVKL-PSGN-DYSLKLHLLHPIVPEQ 58
Query: 264 SSFRILGTKIEVKLAKTSDERWSDLE 289
SS++IL TKIE+KL KT RWS LE
Sbjct: 59 SSYKILSTKIEIKLKKTEAIRWSKLE 84
>gnl|CDD|107220 cd06463, p23_like, Proteins containing this p23_like domain include
p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1.
Both are co-chaperones for the heat shock protein (Hsp)
90. p23 binds Hsp90 and participates in the folding of
a number of Hsp90 clients, including the progesterone
receptor. p23 also has a passive chaperoning activity
and in addition may participate in prostaglandin
synthesis. Both p23 and Sba1p can regulate telomerase
activity. This group includes domains similar to the
C-terminal CHORD-SGT1 (CS) domain of suppressor of G2
allele of Skp1 (Sgt1). Sgt1 interacts with multiple
protein complexes and has the features of a
co-chaperone. Human (h) Sgt1 interacts with both Hsp70
and Hsp90, and has been shown to bind Hsp90 through its
CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a
subunit of both core kinetochore and SCF
(Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is
required for pathogen resistance in plants. This group
also includes the p23_like domains of human
butyrate-induced transcript 1 (hB-ind1), NUD (nuclear
distribution) C, Melusin, and NAD(P)H cytochrome b5
(NCB5) oxidoreductase (OR). hB-ind1 plays a role in the
signaling pathway mediated by the small GTPase Rac1,
NUDC is needed for nuclear movement, Melusin interacts
with two splice variants of beta1 integrin, and NCB5OR
plays a part in maintaining viable pancreatic beta
cells.
Length = 84
Score = 70.4 bits (173), Expect = 2e-15
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Query: 205 WYQTEKQVVVDALIKQAKAETTQVNIDQNSVDIVVTLDPSSSTQHRLHLNLYRPIDPTTS 264
WYQT +V + +K + +V S+ + V ++ L L+ PIDP S
Sbjct: 1 WYQTLDEVTITIPLKDVTKKDVKVEFTPKSLTVSVKGGGGK--EYLLEGELFGPIDPEES 58
Query: 265 SFRILGTKIEVKLAK-TSDERWSDLE 289
+ + KIE+ L K E W LE
Sbjct: 59 KWTVEDRKIEITLKKKEPGEWWPRLE 84
>gnl|CDD|107238 cd06488, p23_melusin_like, p23_like domain similar to the
C-terminal (tail) domain of vertebrate Melusin and
related proteins. Melusin's tail domain interacts with
the cytoplasmic domain of beta1-A and beta1-D isoforms
of beta1 integrin, it does not bind other integrin beta
subunits. Melusin is a muscle-specific protein expressed
in skeletal and cardiac muscles but not in smooth muscle
or other tissues. It is needed for heart hypertrophy
following mechanical overload. The integrin-binding
portion of this domain appears to be sequestered in the
full length melusin protein, Ca2+ may modulate the
protein's conformation exposing this binding site. This
group includes Chordc1, also known as Chp-1, which is
conserved from vertebrates to humans. Mammalian Chordc1
interacts with the heat shock protein (HSP) Hsp90 and is
implicated in circadian and/or homeostatic mechanisms in
the brain. The N-terminal portions of proteins belonging
to this group contain two cysteine and histidine rich
domain (CHORD) domains.
Length = 87
Score = 60.0 bits (146), Expect = 1e-11
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 202 RHNWYQTEKQVVVDALIKQAKAETTQVNIDQNSVDIVVTLDPSSSTQHRLHLNLYRPIDP 261
RH+W+QT VVV K + E + V + + I + + + + +L + L+ ID
Sbjct: 2 RHDWHQTGSHVVVSVYAKNSNPELSVVEANSTVLTIHIVFEGNK--EFQLDIELWGVIDV 59
Query: 262 TTSSFRILGTKIEVKLAKTSDERWSDLE 289
SS +L TK+E+KL K W+ LE
Sbjct: 60 EKSSVNMLPTKVEIKLRKAEPGSWAKLE 87
>gnl|CDD|218355 pfam04969, CS, CS domain. The CS and CHORD (pfam04968) are fused
into a single polypeptide chain in metazoans but are
found in separate proteins in plants; this is thought to
be indicative of an interaction between CS and CHORD. It
has been suggested that the CS domain is a binding
module for HSP90, implying that CS domain-containing
proteins are involved in recruiting heat shock proteins
to multiprotein assemblies.
Length = 78
Score = 59.5 bits (145), Expect = 1e-11
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 202 RHNWYQTEKQVVVDALIKQA-KAETTQVNIDQNSVDIVVTLDPSSSTQHRLHLNLYRPID 260
R++WYQT +V + +K K + +V I S+ + + + L L+ PID
Sbjct: 2 RYDWYQTLDEVTITIPLKGVTKKKDVKVEIKPRSLKVSIKGPGGKE--YLLDGELFGPID 59
Query: 261 PTTSSFRILGTKIEVKLAK 279
P SS++I TK+E+ L K
Sbjct: 60 PEESSWKIEDTKVEITLKK 78
>gnl|CDD|107219 cd00298, ACD_sHsps_p23-like, This domain family includes the
alpha-crystallin domain (ACD) of alpha-crystallin-type
small heat shock proteins (sHsps) and a similar domain
found in p23-like proteins. sHsps are small stress
induced proteins with monomeric masses between 12 -43
kDa, whose common feature is this ACD. sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps. p23 is a cochaperone of the Hsp90 chaperoning
pathway. It binds Hsp90 and participates in the folding
of a number of Hsp90 clients including the progesterone
receptor. p23 also has a passive chaperoning activity.
p23 in addition may act as the cytosolic prostaglandin
E2 synthase. Included in this family is the p23-like
C-terminal CHORD-SGT1 (CS) domain of suppressor of G2
allele of Skp1 (Sgt1) and the p23-like domains of human
butyrate-induced transcript 1 (hB-ind1), NUD (nuclear
distribution) C, Melusin, and NAD(P)H cytochrome b5
(NCB5) oxidoreductase (OR).
Length = 80
Score = 48.0 bits (115), Expect = 2e-07
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 5/80 (6%)
Query: 205 WYQTEKQVVVDALIKQAKAETTQVNIDQNSVDIVVTLDPS-----SSTQHRLHLNLYRPI 259
WYQT+ +VVV + K E +V ++ N + I + S + L +
Sbjct: 1 WYQTDDEVVVTVDLPGVKKEDIKVEVEDNVLTISGKREEEEERERSYGEFERSFELPEDV 60
Query: 260 DPTTSSFRILGTKIEVKLAK 279
DP S + +E+ L K
Sbjct: 61 DPEKSKASLENGVLEITLPK 80
>gnl|CDD|107222 cd06465, p23_hB-ind1_like, p23_like domain found in human (h)
butyrate-induced transcript 1 (B-ind1) and similar
proteins. hB-ind1 participates in signaling by the small
GTPase Rac1. It binds to Rac1 and enhances different
Rac1 effects including activation of nuclear factor (NF)
kappaB and activation of c-Jun N-terminal kinase (JNK).
hB-ind1 also plays a part in the RNA replication and
particle production of Hepatitis C virus (HCV) through
its interaction with heat shock protein Hsp90, HCV
nonstructural protein 5A (NS5A), and the immunophilin
FKBP8. hB-ind1 is upregulated in the outer layer of
Chinese hamster V79 cells grown as multicell spheroids,
versus in the same cells grown as monolayers. This group
includes the Saccharomyces cerevisiae Sba1, a
co-chaperone of the Hsp90. Sba1 has been shown to be is
required for telomere length maintenance, and may
modulate telomerase DNA-binding activity.
Length = 108
Score = 45.7 bits (109), Expect = 2e-06
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 19/91 (20%)
Query: 232 QNSVDIVVTLDPSS----------STQHRLHLNLYRPIDPTTSSFRILGTKIEVKLAK-T 280
++ D + L+P+S ++ L Y+ IDP S +++ G +IE L K
Sbjct: 19 PDAKDPKIKLEPTSLSFKAKGGGGGKKYEFDLEFYKEIDPEESKYKVTGRQIEFVLRKKE 78
Query: 281 SDERWSDLEAKEETKAPSAPKTPY-KRDWDK 310
+ E W L KE+ K P+ K D+DK
Sbjct: 79 AGEYWPRL-TKEKGKL------PWLKVDFDK 102
>gnl|CDD|107226 cd06469, p23_DYX1C1_like, p23_like domain found in proteins similar
to dyslexia susceptibility 1 (DYX1) candidate 1 (C1)
protein, DYX1C1. The human gene encoding this protein is
a positional candidate gene for developmental dyslexia
(DD), it is located on 15q21.3 by the DYX1 DD
susceptibility locus (15q15-21). Independent association
studies have reported conflicting results. However,
association of short-term memory, which plays a role in
DD, with a variant within the DYX1C1 gene has been
reported. Most proteins belonging to this group contain
a C-terminal tetratricopeptide repeat (TPR) protein
binding region.
Length = 78
Score = 41.9 bits (99), Expect = 2e-05
Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 7/85 (8%)
Query: 205 WYQTEKQVVVDALIKQAKAETTQVNIDQNSVDIVVTLDPSSSTQHRLHLNLYRPIDPTTS 264
W QT++ V + +K K + + + + + L+L PID S
Sbjct: 1 WSQTDEDVKISVPLKGVKTSKVDIFCSDLYLKV-------NFPPYLFELDLAAPIDDEKS 53
Query: 265 SFRILGTKIEVKLAKTSDERWSDLE 289
S +I + L K W L
Sbjct: 54 SAKIGNGVLVFTLVKKEPGIWEALC 78
>gnl|CDD|107225 cd06468, p23_CacyBP, p23_like domain found in proteins similar to
Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting
protein (SIP). CacyBP/SIP interacts with S100A6
(calcyclin), with some other members of the S100 family,
with tubulin, and with Siah-1 and Skp-1. The latter two
are components of the ubiquitin ligase that regulates
beta-catenin degradation. The beta-catenin gene is an
oncogene participating in tumorigenesis in many
different cancers. Overexpression of CacyBP/SIP, in part
through its effect on the expression of beta-catenin,
inhibits the proliferation, tumorigenicity, and invasion
of gastric cancer cells. CacyBP/SIP is abundant in
neurons and neuroblastoma NB2a cells. An extensive
re-organization of microtubules accompanies the
differentiation of NB2a cells. CacyBP/SIP may contribute
to NB2a cell differentiation through binding to and
increasing the oligomerization of tubulin. CacyBP/SIP is
also implicated in differentiation of erythroid cells,
rat neonatal cardiomyocytes, in mouse endometrial
events, and in thymocyte development.
Length = 92
Score = 40.3 bits (95), Expect = 1e-04
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 205 WYQTEKQVVVDALIK---QAKAETTQVNIDQNSVDIVVTLDPSSSTQHRLHLNLYRPIDP 261
W Q++K V + +K Q E QV + S ++ V D + L + IDP
Sbjct: 6 WDQSDKFVKIYITLKGVHQLPKENIQVEFTERSFELKV-HDLNGKNYRFTINRLLKKIDP 64
Query: 262 TTSSFRILGTKIEVKLAKTSDERWSDLE 289
SSF++ +I + LAK +++W L
Sbjct: 65 EKSSFKVKTDRIVITLAKKKEKKWESLT 92
>gnl|CDD|220081 pfam08959, DUF1872, Domain of unknown function (DUF1872). The CS
domain, found in Ubiquitin specific peptidase 19
(USP-19), has no known function.
Length = 288
Score = 35.0 bits (80), Expect = 0.051
Identities = 28/119 (23%), Positives = 53/119 (44%), Gaps = 11/119 (9%)
Query: 183 DVSVAGTAPPPPTPTVQNIRHNWYQT-EKQVVVDALIKQAKAETTQVNI-DQNSVDIVVT 240
T+ P P +Q ++++ Y+ VVV +K+ +T++V +Q+ I T
Sbjct: 62 TCLEDTTSEPEPMVNLQFVKNDSYEKGTDLVVVHVYVKEICRDTSRVLFREQDFTLIFQT 121
Query: 241 LDPS---------SSTQHRLHLNLYRPIDPTTSSFRILGTKIEVKLAKTSDERWSDLEA 290
D + +T R + L I+P S+ +++++ L K +RW LEA
Sbjct: 122 RDGNFLRLHPDCGPNTHFRWQVKLRNLIEPEQCSYCFTPSRLDITLKKRQSQRWGGLEA 180
>gnl|CDD|236584 PRK09602, PRK09602, translation-associated GTPase; Reviewed.
Length = 396
Score = 32.5 bits (75), Expect = 0.33
Identities = 12/47 (25%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 305 KRDWDKVAQQIEDEKKEGEAALNELFQKIYGEGSDEVRKAMNKSFLE 351
+++W+K +++ + EK + E AL E + G + V++A+ + L
Sbjct: 150 EKNWEKFSRKAQAEKFDIEEALAEQLSGL-GINEEHVKEALRELGLP 195
>gnl|CDD|107240 cd06490, p23_NCB5OR, p23_like domain found in NAD(P)H cytochrome b5
(NCB5) oxidoreductase (OR) and similar proteins. NCB5OR
is widely expressed in human organs and tissues and is
localized in the ER (endoplasmic reticulum). It appears
to play a critical role in maintaining viable pancreatic
beta cells. Mice homozygous for a targeted knockout (KO)
of the gene encoding NCB5OR develop an early-onset
nonautoimmune diabetes phenotype with a non-inflammatory
beta-cell deficiency. The role of NCB5OR in beta cells
may be in maintaining or regulating their redox status.
Proteins in this group in addition contain an N-terminal
cytochrome b5 domain and a C-terminal cytochrome b5
oxidoreductase domain. The gene encoding NCB5OR has
been considered as a positional candidate for type II
diabetes and other diabetes subtypes related to B-cell
dysfunction, however variation in its coding region does
not appear not to be a major contributor to the
pathogenesis of these diseases.
Length = 87
Score = 29.2 bits (66), Expect = 0.88
Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 8/88 (9%)
Query: 205 WYQTEKQVVVDALIKQA--KAETTQVNIDQNSVDIVVTLDPSSSTQHRLHLNLYRPI--D 260
W+QT+ +V + K A+ V+ Q + + + L + LHL+L +
Sbjct: 3 WFQTDSEVTIVVYTKSKGNPADIVIVDDQQRELRVEIILG---DKSYLLHLDLSNEVQWP 59
Query: 261 PTTSSFRILGTKIEVKLAKTSDERWSDL 288
G KIE+ L K E+W+ L
Sbjct: 60 CEVRISTETG-KIELVLKKKEPEKWTSL 86
>gnl|CDD|204807 pfam12010, DUF3502, Domain of unknown function (DUF3502). This
presumed domain is functionally uncharacterized. This
domain is found in bacteria. This domain is about 140
amino acids in length. This domain is found associated
with pfam01547.
Length = 129
Score = 29.2 bits (66), Expect = 1.8
Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 15/81 (18%)
Query: 281 SDERWSDLEAKEETKAPSAPKTPYKRDWDKVAQQIEDEKK--------------EGEAAL 326
+++W + + +A +P +K D KV +I + E L
Sbjct: 40 PEDKWEKFKEFNK-EAKESPILGFKFDSSKVKTEIAAISNVMSEFEPALYTGSVDPEEYL 98
Query: 327 NELFQKIYGEGSDEVRKAMNK 347
+L QK+ G D+V+K M K
Sbjct: 99 PKLNQKLKAAGIDKVQKEMQK 119
>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import
receptor (72 kDa mitochondrial outermembrane protein)
(mitochondrial import receptor for the ADP/ATP carrier)
(translocase of outermembrane tom70). [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 615
Score = 30.0 bits (67), Expect = 2.5
Identities = 21/75 (28%), Positives = 29/75 (38%), Gaps = 8/75 (10%)
Query: 270 GTKIEVKLAKTSDERWSDLEAKEETKAPSAPKTPY--------KRDWDKVAQQIEDEKKE 321
KI K + + + E K E K +APK + D VA E+E+K+
Sbjct: 66 KPKISKKERRKRKQAEKETEGKTEEKKSTAPKNAPVEPADELPEIDESSVANLSEEERKK 125
Query: 322 GEAALNELFQKIYGE 336
A L E K Y
Sbjct: 126 YAAKLKEKGNKAYRN 140
>gnl|CDD|223202 COG0124, HisS, Histidyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 429
Score = 29.9 bits (68), Expect = 2.6
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 328 ELFQKIYGEGSDEVRKAMNKSFLESGGTVLS 358
ELF + GE +D V K M +F + GG L+
Sbjct: 49 ELFARKSGEETDVVEKEM-YTFKDKGGRSLA 78
>gnl|CDD|235850 PRK06669, fliH, flagellar assembly protein H; Validated.
Length = 281
Score = 29.6 bits (67), Expect = 2.8
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 309 DKVAQQIEDEKKEGEAALNELFQKIYGEGSDEVRKAMNKSFLES 352
+K+ QIE E++E E L L ++ EG +E + + LE
Sbjct: 95 EKLQMQIEREQEEWEEELERLIEEAKAEGYEEGYEKGREEGLEE 138
>gnl|CDD|176237 cd08276, MDR7, Medium chain dehydrogenases/reductase
(MDR)/zinc-dependent alcohol dehydrogenase-like family.
This group is a member of the medium chain
dehydrogenases/reductase (MDR)/zinc-dependent alcohol
dehydrogenase-like family, but lacks the zinc-binding
sites of the zinc-dependent alcohol dehydrogenases. The
medium chain dehydrogenases/reductase
(MDR)/zinc-dependent alcohol dehydrogenase-like family,
which contains the zinc-dependent alcohol dehydrogenase
(ADH-Zn) and related proteins, is a diverse group of
proteins related to the first identified member, class I
mammalian ADH. MDRs display a broad range of activities
and are distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P)-binding Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group contains a
host of activities, including the founding alcohol
dehydrogenase (ADH), quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases (ADHs)
catalyze the NAD(P)(H)-dependent interconversion of
alcohols to aldehydes or ketones. Active site zinc has
a catalytic role, while structural zinc aids in
stability. ADH-like proteins typically form dimers
(typically higher plants, mammals) or tetramers (yeast,
bacteria), and generally have 2 tightly bound zinc atoms
per subunit. The active site zinc is coordinated by a
histidine, two cysteines, and a water molecule. The
second zinc seems to play a structural role, affects
subunit interactions, and is typically coordinated by 4
cysteines.
Length = 336
Score = 29.4 bits (67), Expect = 3.4
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 11/43 (25%)
Query: 123 LVKLKNASQNFSGTKMEIRDKMPQNEKLNGTMGHPLKFGTVPA 165
LV++ S N+ RD + LNG P+K +P
Sbjct: 31 LVRVHAVSLNY-------RDLLI----LNGRYPPPVKDPLIPL 62
>gnl|CDD|184866 PRK14864, PRK14864, putative biofilm stress and motility protein A;
Provisional.
Length = 104
Score = 27.7 bits (62), Expect = 4.1
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 6/43 (13%)
Query: 169 RLASLLVRILTGSSDVSVAGT--APPPPTPTVQNIRHNWYQTE 209
+ LL +L+ S ++ GT PPP Q IR QT+
Sbjct: 8 FASLLLTLLLSACS--ALQGTPQPAPPPADHAQEIRRA--QTQ 46
>gnl|CDD|214826 smart00806, AIP3, Actin interacting protein 3. Aip3p/Bud6p is a
regulator of cell and cytoskeletal polarity in
Saccharomyces cerevisiae that was previously identified
as an actin-interacting protein. Actin-interacting
protein 3 (Aip3p) localizes at the cell cortex where
cytoskeleton assembly must be achieved to execute
polarized cell growth, and deletion of AIP3 causes gross
defects in cell and cytoskeletal polarity. Aip3p
localization is mediated by the secretory pathway,
mutations in early- or late-acting components of the
secretory apparatus lead to Aip3p mislocalization.
Length = 426
Score = 28.9 bits (65), Expect = 4.7
Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 10/68 (14%)
Query: 80 FTLQT---SDLVDSLTAVSTPLSQIEVCCIDRLAKYPKCRFGTRRKLVKLKNASQNFSGT 136
TLQ +DL + L +E CC ++ K P R K V L GT
Sbjct: 298 LTLQEDLIADLKEDLEKAEETFDLVEQCCEEQ-EKGPS---KNRNKPVSLPVP---TPGT 350
Query: 137 KMEIRDKM 144
+++D++
Sbjct: 351 FNDLKDQV 358
>gnl|CDD|238719 cd01439, TCCD_inducible_PARP_like, Poly(ADP-ribose) polymerases
catalyse the covalent attachment of ADP-ribose units
from NAD+ to itself and to a limited number of other DNA
binding proteins, which decreases their affinity for
DNA. Poly(ADP-ribose) polymerase is a regulatory
component induced by DNA damage. The carboxyl-terminal
region is the most highly conserved region of the
protein. 2,3,7,8-Tetrachlorodibenzo-p-dioxin (TCDD)
causes pleotropic effects in mammalian species through
modulating gene expression. TCCD indicible PARP
(TiPARP) is a target of TCDD that may contribute to
multiple responses to TCDD by modulating protein
function through poly ADP-ribosylation.
Length = 121
Score = 27.7 bits (62), Expect = 4.8
Identities = 12/41 (29%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 164 PANLGRLASLLVRILTGSSDVSVAG-TAPPPPTPTVQNIRH 203
P G L R+LTG G PP V+ R+
Sbjct: 52 PKADGLKEMFLARVLTGDYTQGHPGYRRPPLKPSGVELDRY 92
>gnl|CDD|234715 PRK00290, dnaK, molecular chaperone DnaK; Provisional.
Length = 627
Score = 28.5 bits (65), Expect = 7.8
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 309 DKVAQQIEDEKKEGEAALNELFQKIYGEGSDEVRKAMNK 347
DKV DEK++ EAA+ EL + + GE + ++ +
Sbjct: 548 DKVP---ADEKEKIEAAIKELKEALKGEDKEAIKAKTEE 583
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.313 0.129 0.372
Gapped
Lambda K H
0.267 0.0704 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,899,516
Number of extensions: 1764059
Number of successful extensions: 1418
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1406
Number of HSP's successfully gapped: 35
Length of query: 384
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 285
Effective length of database: 6,546,556
Effective search space: 1865768460
Effective search space used: 1865768460
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (26.9 bits)