RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5485
(384 letters)
>d1wh0a_ b.15.1.3 (A:) Ubiquitin carboxyl-terminal hydrolase 19,
USP19 {Human (Homo sapiens) [TaxId: 9606]}
Length = 134
Score = 86.2 bits (213), Expect = 4e-21
Identities = 25/128 (19%), Positives = 49/128 (38%), Gaps = 12/128 (9%)
Query: 187 AGTAPPPPTPTVQNIRHNWYQT-EKQVVVDALIKQAKAETTQVNIDQNSVDIVV------ 239
+G P + ++++ Y+ VVV +K+ +T++V + ++
Sbjct: 6 SGVDEPESMVNLAFVKNDSYEKGPDSVVVHVYVKEICRDTSRVLFREQDFTLIFQTRDGN 65
Query: 240 ----TLDPSSSTQHRLHLNLYRPIDPTTSSFRILGTKIEVKLAKTSDERWSDLEAKEE-T 294
T R + L I+P +F ++I++ L K +RW LEA
Sbjct: 66 FLRLHPGCGPHTTFRWQVKLRNLIEPEQCTFCFTASRIDICLRKRQSQRWGGLEAPAARV 125
Query: 295 KAPSAPKT 302
S P +
Sbjct: 126 GGASGPSS 133
>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 92
Score = 75.7 bits (186), Expect = 8e-18
Identities = 35/91 (38%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
Query: 201 IRHNWYQTEKQVVVDALIKQAKAETTQVNIDQNSVDIVVTLDPSSSTQHRLHLNLYRPID 260
I+++WYQTE QVV+ +IK + V + + +V L S + L L L PI
Sbjct: 3 IKYDWYQTESQVVITLMIKNVQKNDVNVEFSEKELSALVKL--PSGEDYNLKLELLHPII 60
Query: 261 PTTSSFRILGTKIEVKLAKTSDERWSDLEAK 291
P S+F++L TKIE+KL K RW LE +
Sbjct: 61 PEQSTFKVLSTKIEIKLKKPEAVRWEKLEGQ 91
>d1ejfa_ b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 110
Score = 55.0 bits (132), Expect = 2e-10
Identities = 21/107 (19%), Positives = 37/107 (34%), Gaps = 10/107 (9%)
Query: 205 WYQTEKQVVVDALIKQAKAETTQVNIDQNSVDIVVTLDPSSSTQHRLHLNLYRPIDPTTS 264
WY V ++ ++ +K + + + D +H ++L+ IDP S
Sbjct: 8 WYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNF---KHLNEIDLFHCIDPNDS 64
Query: 265 SFRILGTKIEVKLAK-TSDERWSDLEAKEETKAPSAPKTPYKRDWDK 310
+ I L K S + W L KE K D++
Sbjct: 65 KHKRTDRSILCCLRKGESGQSWPRLT-KERAKLN-----WLSVDFNN 105
>d1wgva_ b.15.1.4 (A:) NudC domain containing protein 3, NUDCD3
(KIAA1068) {Human (Homo sapiens) [TaxId: 9606]}
Length = 124
Score = 52.3 bits (125), Expect = 4e-09
Identities = 19/103 (18%), Positives = 41/103 (39%), Gaps = 5/103 (4%)
Query: 202 RHNWYQTEKQVVVDALIKQAKAETTQVNIDQNSVDIVVTLDPSSSTQHRLHLNLYRPIDP 261
+ W Q + V + + + QV++ +S I V + + + + L I+
Sbjct: 21 NYTWSQDYTDLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLEENGERVLMEGKLTHKINT 80
Query: 262 TTSSFRILGTKIEVK-LAKTSDERWSDLEAKEE----TKAPSA 299
+S + + K + L+K + W+ + EE PS+
Sbjct: 81 ESSLWSLEPGKCVLVNLSKVGEYWWNAILEGEEPIDIDSGPSS 123
>d1k75a_ c.82.1.2 (A:) L-histidinol dehydrogenase HisD {Escherichia
coli [TaxId: 562]}
Length = 431
Score = 29.6 bits (66), Expect = 0.62
Identities = 10/50 (20%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Query: 284 RWSDLEAKEETKAPSAPKTPYKRDWDKVAQQI-EDEKKEGEAALNELFQK 332
W+ A+++ + P + I ++ K G+ AL E K
Sbjct: 5 DWNSCTAEQQRQLLMRPAISASESITRTVNDILDNVKARGDEALREYSAK 54
>d1tjva_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin
{Domestic duck (Anas platyrhynchos), delta-crystallin
[TaxId: 8839]}
Length = 449
Score = 28.8 bits (63), Expect = 1.1
Identities = 10/58 (17%), Positives = 18/58 (31%), Gaps = 1/58 (1%)
Query: 310 KVAQQIEDEKKEGEAALNELFQKIYGEGSDEVRKAMN-KSFLESGGTVLSTNWDEVKR 366
K E + E + I + S +V + N + +E + T V
Sbjct: 377 KAVHLAETKGITINKLSLEDLKSISPQFSSDVSQVFNFVNSVEQYTALAGTAKSSVTT 434
>d3bp8c1 d.95.1.1 (C:13-87) Glucose permease domain IIB {Escherichia
coli [TaxId: 562]}
Length = 75
Score = 25.0 bits (55), Expect = 5.0
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 11/45 (24%)
Query: 314 QIEDEKKEGEAALNEL-----------FQKIYGEGSDEVRKAMNK 347
+ D K +A L +L Q I+G SD ++ M++
Sbjct: 28 SVADVSKVDQAGLKKLGAAGVVVAGSGVQAIFGTKSDNLKTEMDE 72
>d1a6ma_ a.1.1.2 (A:) Myoglobin {Sperm whale (Physeter catodon)
[TaxId: 9755]}
Length = 151
Score = 25.8 bits (56), Expect = 7.2
Identities = 13/50 (26%), Positives = 18/50 (36%), Gaps = 9/50 (18%)
Query: 27 QREKQASKTGWEKASRFENAFRIKADPGGNRSRDLGRSFEHFPLVGELFK 76
+ E Q W K ++AD G+ L R F+ P E F
Sbjct: 4 EGEWQLVLHVWAK---------VEADVAGHGQDILIRLFKSHPETLEKFD 44
>d1jixa_ c.87.1.1 (A:) beta-Glucosyltransferase (DNA-modifying)
{Bacteriophage T4 [TaxId: 10665]}
Length = 351
Score = 25.8 bits (56), Expect = 8.7
Identities = 17/79 (21%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
Query: 196 PTVQNIRHNWYQTEKQVVVDALIKQAKAETTQVNID-----QNSVDIVVTLDPSSSTQHR 250
P V+N + TE+++++ + IK + +N+D VD V+ + Q++
Sbjct: 110 PNVKNRPWAYLYTEEELLIKSPIK---VISQGINLDIAKAAHKKVDNVIEFEYFPIEQYK 166
Query: 251 LHLNLYRPIDPTTSSFRIL 269
+H+N ++ PT + ++
Sbjct: 167 IHMNDFQLSKPTKKTLDVI 185
>d1dkza1 a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: 562]}
Length = 97
Score = 24.7 bits (54), Expect = 9.4
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 316 EDEKKEGEAALNELFQKIYGEGSDEVRKAMNK 347
D+K E+AL L + GE + M +
Sbjct: 53 ADDKTAIESALTALETALKGEDKAAIEAKMQE 84
>d1n7za_ b.127.1.1 (A:) Baseplate structural protein gp8
{Bacteriophage T4 [TaxId: 10665]}
Length = 328
Score = 25.8 bits (56), Expect = 9.5
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 181 SSDVSVAGTAPPPPTPTVQNIRHNW 205
SS+ + G APP PT +V + W
Sbjct: 42 SSNENEVGFAPPYPTDSVLGVTDMW 66
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.129 0.372
Gapped
Lambda K H
0.267 0.0703 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,369,616
Number of extensions: 61473
Number of successful extensions: 157
Number of sequences better than 10.0: 1
Number of HSP's gapped: 154
Number of HSP's successfully gapped: 15
Length of query: 384
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 297
Effective length of database: 1,213,086
Effective search space: 360286542
Effective search space used: 360286542
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (24.6 bits)