BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5489
(94 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q24247|ITA1_DROME Integrin alpha-PS1 OS=Drosophila melanogaster GN=mew PE=1 SV=2
Length = 1146
Score = 72.0 bits (175), Expect = 1e-12, Method: Composition-based stats.
Identities = 39/85 (45%), Positives = 56/85 (65%), Gaps = 4/85 (4%)
Query: 12 TEMVGS-YELLLGQHQ-EVLLNVSTHNAGESAYEAQLFIAHHPHLSYIGLEGQRGALCNP 69
TE G+ Y L+L + + EV +NVS N +SAYEAQLFIAH +SY+ + A CN
Sbjct: 659 TESSGNEYTLILDETELEVRINVS--NLADSAYEAQLFIAHQAGVSYVATKKPTNATCNS 716
Query: 70 YNTSLVVCALGNPFKKNASSHLKLR 94
YNT+LV C+LGNP ++ ++ + +R
Sbjct: 717 YNTTLVACSLGNPMLRDTTTFVTIR 741
>sp|P26009|ITA8_CHICK Integrin alpha-8 OS=Gallus gallus GN=ITGA8 PE=1 SV=1
Length = 1044
Score = 48.9 bits (115), Expect = 8e-06, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 7/83 (8%)
Query: 19 ELLLGQHQEVLLNVSTHNAGESAYEAQLFIAHHPHLSYIGLEGQRGAL----CN---PYN 71
+L++G+ V+L ++ N GE AYEA+L I P Y G+E AL C+
Sbjct: 643 QLIIGEENCVMLIINPRNDGEGAYEAELHIKIPPEADYTGVERNNKALRVLSCDYKMENE 702
Query: 72 TSLVVCALGNPFKKNASSHLKLR 94
T +VVC LGNP A+ +R
Sbjct: 703 TRMVVCDLGNPMVAGANFSTGIR 725
>sp|P53708|ITA8_HUMAN Integrin alpha-8 OS=Homo sapiens GN=ITGA8 PE=1 SV=3
Length = 1063
Score = 48.9 bits (115), Expect = 9e-06, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 9/85 (10%)
Query: 18 YELLLGQHQEVLLNVSTHNAGESAYEAQLFIAHHPHLSYIGLE----GQRGALCNPYN-- 71
+++++G ++L ++ N GE AYEA+LF+ Y+G+E G R C Y
Sbjct: 660 HQVIIGDENHLMLIINARNEGEGAYEAELFVMIPEEADYVGIERNNKGFRPLSCE-YKME 718
Query: 72 --TSLVVCALGNPFKKNASSHLKLR 94
T +VVC LGNP + L LR
Sbjct: 719 NVTRMVVCDLGNPMVSGTNYSLGLR 743
>sp|A2ARA8|ITA8_MOUSE Integrin alpha-8 OS=Mus musculus GN=Itga8 PE=1 SV=1
Length = 1062
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 9/85 (10%)
Query: 18 YELLLGQHQEVLLNVSTHNAGESAYEAQLFIAHHPHLSYIGLE----GQRGALCNPYN-- 71
+++++G ++L ++ N GE AYEA+LF+ Y+G+E G R C Y
Sbjct: 659 HQIIIGDENHLMLIINARNEGEGAYEAELFVIIPEEADYVGIERNNKGLRPLSCE-YKME 717
Query: 72 --TSLVVCALGNPFKKNASSHLKLR 94
T +VVC LGNP + L LR
Sbjct: 718 NVTRMVVCDLGNPMVTGTNFSLGLR 742
>sp|P26008|ITAV_CHICK Integrin alpha-V OS=Gallus gallus GN=ITGAV PE=2 SV=1
Length = 1034
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 13/91 (14%)
Query: 2 KPQ-SLSVRESTEMVGSYELLLGQHQEVLLNVSTHNAGESAYEAQLFIAHHPHLSYIGLE 60
KP+ +SVR + ++ +G + L V+ N GE AYEA+LF+ P +IG+
Sbjct: 619 KPKLEVSVRSDQK-----KIYIGDDNPLTLIVTAENQGEGAYEAELFVIVPPQADFIGVV 673
Query: 61 GQRGALC-------NPYNTSLVVCALGNPFK 84
AL T +VVC LGNP K
Sbjct: 674 RNNEALARLSCAFKTENQTRMVVCDLGNPMK 704
>sp|P53711|ITA2B_PAPCY Integrin alpha-IIb (Fragment) OS=Papio cynocephalus GN=ITGA2B PE=2
SV=1
Length = 604
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 9/84 (10%)
Query: 12 TEMVGSYELLLGQHQEVLLNVSTHNAGESAYEAQLFIAHHPHLSYI-----GLEGQRGAL 66
T V LL+G + L + T N GE AYEA+L + H P ++ +EG +
Sbjct: 211 TASVTGSPLLVGADNVLELQMDTANEGEGAYEAELAV-HLPQGAHYMRARSNVEGFERLI 269
Query: 67 CNPYN---TSLVVCALGNPFKKNA 87
CN T +V+C LGNP KKN
Sbjct: 270 CNQKKENETRVVLCELGNPMKKNT 293
>sp|P43406|ITAV_MOUSE Integrin alpha-V OS=Mus musculus GN=Itgav PE=1 SV=2
Length = 1044
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
Query: 19 ELLLGQHQEVLLNVSTHNAGESAYEAQLFIAHHPHLSYIGLEGQRGALC-------NPYN 71
++ +G + L V N GE AYEA+L ++ P +IG+ AL
Sbjct: 646 KIYIGDDNPLTLTVKAQNQGEGAYEAELIVSIPPQADFIGVVRNNEALARLSCAFKTENQ 705
Query: 72 TSLVVCALGNPFK 84
T VVC LGNP K
Sbjct: 706 TRQVVCDLGNPMK 718
>sp|P08514|ITA2B_HUMAN Integrin alpha-IIb OS=Homo sapiens GN=ITGA2B PE=1 SV=3
Length = 1039
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 9/84 (10%)
Query: 12 TEMVGSYELLLGQHQEVLLNVSTHNAGESAYEAQLFIAHHPHLSYI-----GLEGQRGAL 66
T V LL+G + L + N GE AYEA+L + H P ++ +EG +
Sbjct: 646 TASVTGSPLLVGADNVLELQMDAANEGEGAYEAELAV-HLPQGAHYMRALSNVEGFERLI 704
Query: 67 CNPYN---TSLVVCALGNPFKKNA 87
CN T +V+C LGNP KKNA
Sbjct: 705 CNQKKENETRVVLCELGNPMKKNA 728
>sp|Q9QUM0|ITA2B_MOUSE Integrin alpha-IIb OS=Mus musculus GN=Itga2b PE=1 SV=2
Length = 1033
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 7/82 (8%)
Query: 12 TEMVGSYELLLGQHQEVLLNVSTHNAGESAYEAQLFIAHHPHLSYI----GLEGQRGALC 67
T G LL+G + L + N GE AYEA+L + P Y+ +EG +C
Sbjct: 645 TATAGDSPLLIGADNVLELKIEAANDGEGAYEAELAVHLPPGAHYMRALSNIEGFERLVC 704
Query: 68 NPYN---TSLVVCALGNPFKKN 86
+ + +C LGNP KK+
Sbjct: 705 TQKKENESRVALCELGNPMKKD 726
>sp|P08648|ITA5_HUMAN Integrin alpha-5 OS=Homo sapiens GN=ITGA5 PE=1 SV=2
Length = 1049
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 37/83 (44%), Gaps = 8/83 (9%)
Query: 20 LLLGQHQEVLLNVSTHNAGES-AYEAQLFIAHHPHLSYIGLEGQRGAL----CNPY---N 71
+ LG + L N GE AYEA+L + P Y GL G C+ +
Sbjct: 666 VYLGDKNALNLTFHAQNVGEGGAYEAELRVTAPPEAEYSGLVRHPGNFSSLSCDYFAVNQ 725
Query: 72 TSLVVCALGNPFKKNASSHLKLR 94
+ L+VC LGNP K AS LR
Sbjct: 726 SRLLVCDLGNPMKAGASLWGGLR 748
>sp|P06756|ITAV_HUMAN Integrin alpha-V OS=Homo sapiens GN=ITGAV PE=1 SV=2
Length = 1048
Score = 38.5 bits (88), Expect = 0.012, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 7/73 (9%)
Query: 19 ELLLGQHQEVLLNVSTHNAGESAYEAQLFIAHHPHLSYIGLEGQRGALC-------NPYN 71
++ +G + L V N GE AYEA+L ++ +IG+ AL
Sbjct: 646 KIYIGDDNPLTLIVKAQNQGEGAYEAELIVSIPLQADFIGVVRNNEALARLSCAFKTENQ 705
Query: 72 TSLVVCALGNPFK 84
T VVC LGNP K
Sbjct: 706 TRQVVCDLGNPMK 718
>sp|P80746|ITAV_BOVIN Integrin alpha-V OS=Bos taurus GN=ITGAV PE=1 SV=3
Length = 1048
Score = 38.5 bits (88), Expect = 0.014, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 7/73 (9%)
Query: 19 ELLLGQHQEVLLNVSTHNAGESAYEAQLFIAHHPHLSYIGLEGQRGALC-------NPYN 71
++ +G + L V N GE AYEA+L ++ +IG+ AL
Sbjct: 646 KIYIGDDNPLTLIVKAQNQGEGAYEAELIVSIPLQADFIGVVRNSEALARLSCAFKTENQ 705
Query: 72 TSLVVCALGNPFK 84
T VVC LGNP K
Sbjct: 706 TRQVVCDLGNPMK 718
>sp|Q06274|ITA5_XENLA Integrin alpha-5 OS=Xenopus laevis GN=itga5 PE=2 SV=1
Length = 1050
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 36/82 (43%), Gaps = 7/82 (8%)
Query: 20 LLLGQHQEVLLNVSTHNAGESAYEAQLFIAHHPHLSYIGL-EGQRGALCNP------YNT 72
+ LG + L + N G AYEA+L++ P Y G+ L P T
Sbjct: 657 VYLGDENFLTLFFNAQNLGGGAYEAELYVTLPPEAEYSGIVRNNEHLLILPCAYEMENQT 716
Query: 73 SLVVCALGNPFKKNASSHLKLR 94
LV+C LGNP K AS LR
Sbjct: 717 RLVICDLGNPMKAGASLAGGLR 738
>sp|Q27977|ITA5_BOVIN Integrin alpha-5 (Fragment) OS=Bos taurus GN=ITGA5 PE=2 SV=1
Length = 385
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 36/81 (44%), Gaps = 8/81 (9%)
Query: 22 LGQHQEVLLNVSTHNAGES-AYEAQLFIAHHPHLSYIGLEGQRGAL----CNPY---NTS 73
LG + L N GE AYEA+L + P Y GL G C+ + +
Sbjct: 24 LGDKNSLNLTFHAQNVGEGGAYEAELRVTAPPEAEYSGLVRHPGNFSSLSCDYFAVNQSR 83
Query: 74 LVVCALGNPFKKNASSHLKLR 94
L+VC LGNP K AS LR
Sbjct: 84 LLVCDLGNPMKAGASLWGGLR 104
>sp|P26007|ITA6_CHICK Integrin alpha-6 OS=Gallus gallus GN=ITGA6 PE=2 SV=1
Length = 1072
Score = 37.4 bits (85), Expect = 0.024, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 16/85 (18%)
Query: 20 LLLGQHQEVLLNVSTHNA----------GESAYEAQLFIAHHPHLSYIGLEGQRG----- 64
L+L +++ L ++ N GE AYEA+L L+Y RG
Sbjct: 663 LVLKDQKDIALEITVTNNPSDARNPQKDGEDAYEAKLIATFPDSLTYSAFREMRGYPEKQ 722
Query: 65 ALCNP-YNTSLVVCALGNPFKKNAS 88
C N S C LGNPFK+N++
Sbjct: 723 LTCGANQNGSQAECELGNPFKRNSN 747
>sp|A8X3A7|PAT2_CAEBR Integrin alpha pat-2 OS=Caenorhabditis briggsae GN=pat-2 PE=3 SV=2
Length = 1224
Score = 37.4 bits (85), Expect = 0.030, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 12/87 (13%)
Query: 12 TEMVGSYELLLG-QHQEVLLNVSTHNAGESAYEAQLFIAHHPHLSYIGLE--GQRGA--L 66
T + + LLG Q +L+NV+ N GE +YE +L+ Y G+E G G+
Sbjct: 661 TAVADREKFLLGTQDNTMLINVTVQNGGEDSYETKLYFDVPQGFEYGGIESVGADGSAPA 720
Query: 67 CNPYNTS-------LVVCALGNPFKKN 86
C+P + C LGNP N
Sbjct: 721 CSPTSDEPDSDGKWTFACDLGNPLPAN 747
>sp|P18614|ITA1_RAT Integrin alpha-1 OS=Rattus norvegicus GN=Itga1 PE=1 SV=1
Length = 1180
Score = 37.0 bits (84), Expect = 0.032, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 24 QHQEVLLNVSTHNAGESAYEAQLFIAHHPHLSYIGLEGQRGALCNPYNTSLVVCALGNPF 83
QH + ++++ N G+SAY + + H P+L + G+E + C + + C +G PF
Sbjct: 834 QHDKFNVSLTVKNKGDSAYNTRTVVQHSPNLIFSGIEEIQKDSCE--SNQNITCRVGYPF 891
>sp|P34446|PAT2_CAEEL Integrin alpha pat-2 OS=Caenorhabditis elegans GN=pat-2 PE=1 SV=1
Length = 1226
Score = 37.0 bits (84), Expect = 0.040, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 14/89 (15%)
Query: 12 TEMVGSYELLLG-QHQEVLLNVSTHNAGESAYEAQLFIAHHPHLSYIGLE-----GQRGA 65
T + + LLG Q +L+NV+ N GE +YE +L+ Y G+E G + A
Sbjct: 659 TAVADREKFLLGTQDNTMLINVTVQNGGEDSYETKLYFDVPQGFEYGGIESVGGDGSKSA 718
Query: 66 -LCNPYNTS-------LVVCALGNPFKKN 86
C+P + C LGNP N
Sbjct: 719 PACSPTSDEPDSDGKWTFACDLGNPLPAN 747
>sp|Q13797|ITA9_HUMAN Integrin alpha-9 OS=Homo sapiens GN=ITGA9 PE=1 SV=2
Length = 1035
Score = 36.2 bits (82), Expect = 0.057, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 20 LLLGQHQEVLLNVSTHNAGESAYEAQLFIAHHPHLSYIGL--EGQRGALCNPYNTSLVVC 77
L LG + + LN+S N G+ AY+A + L +I + + + G C + + C
Sbjct: 647 LALGAVKNISLNISISNLGDDAYDANVSFNVSRELFFINMWQKEEMGISCELLESDFLKC 706
Query: 78 ALGNPFKKNASSH 90
++G PF ++ S +
Sbjct: 707 SVGFPFMRSKSKY 719
>sp|Q61739|ITA6_MOUSE Integrin alpha-6 OS=Mus musculus GN=Itga6 PE=1 SV=3
Length = 1091
Score = 36.2 bits (82), Expect = 0.058, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 18/90 (20%)
Query: 16 GSYELLLGQHQEVLLNVSTHNA----------GESAYEAQLFIAHHPHLSYIGL------ 59
G EL+L +++ L ++ N+ G+ A+EA+L L+Y
Sbjct: 660 GIPELVLKDQKDIALEITVTNSPSDPRNPRKDGDDAHEAKLIATFPDTLTYSAYRELRAF 719
Query: 60 -EGQRGALCNPYNTSLVVCALGNPFKKNAS 88
E Q + N N S C LGNPFK+N+S
Sbjct: 720 PEKQLSCVANQ-NGSQADCELGNPFKRNSS 748
>sp|P12080|ITA2_DROME Integrin alpha-PS2 OS=Drosophila melanogaster GN=if PE=1 SV=2
Length = 1396
Score = 35.4 bits (80), Expect = 0.10, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 8/81 (9%)
Query: 21 LLGQHQEVLLNVSTHNAGESAYEAQLFIAHHPHLSY-----IGLEGQRGALCNP---YNT 72
L G + +++ V N E A+EA ++ P L + +G + C+P N
Sbjct: 682 LFGSPEPLVIEVFISNTNEDAFEAAFYMVTPPDLQFRKLQQLGEKKDTPITCSPPTPENN 741
Query: 73 SLVVCALGNPFKKNASSHLKL 93
+ C +GNP + +H K+
Sbjct: 742 HTLKCDIGNPLESGKIAHFKI 762
>sp|P23229|ITA6_HUMAN Integrin alpha-6 OS=Homo sapiens GN=ITGA6 PE=1 SV=4
Length = 1130
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 18/90 (20%)
Query: 16 GSYELLLGQHQEVLLNVSTHNA----------GESAYEAQLFIAHHPHLSYIGL------ 59
G EL+L +++ L ++ N+ G+ A+EA+L L+Y
Sbjct: 699 GVPELVLKDQKDIALEITVTNSPSNPRNPTKDGDDAHEAKLIATFPDTLTYSAYRELRAF 758
Query: 60 -EGQRGALCNPYNTSLVVCALGNPFKKNAS 88
E Q + N N S C LGNPFK+N++
Sbjct: 759 PEKQLSCVANQ-NGSQADCELGNPFKRNSN 787
>sp|A5WH04|SSRP_PSYWF SsrA-binding protein OS=Psychrobacter sp. (strain PRwf-1) GN=smpB
PE=3 SV=1
Length = 158
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Query: 16 GSYELLLGQHQEVLLNVSTHNAGESAYEAQLFIAHHPHLSYIGLEGQRGALCNP----YN 71
G+ L G H + LL+ STH +S +L + + G Q+G C P +
Sbjct: 58 GNEAFLFGAHIQPLLSSSTHVDPDSIRTRKLLLNRKEIDTLFGAVNQKGYACVPLEVYWK 117
Query: 72 TSLVVCALG 80
SLV C +G
Sbjct: 118 DSLVKCKIG 126
>sp|Q13683|ITA7_HUMAN Integrin alpha-7 OS=Homo sapiens GN=ITGA7 PE=1 SV=3
Length = 1181
Score = 33.9 bits (76), Expect = 0.33, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 38 GESAYEAQLFIAHHPHLSYIG---LEGQRGALC-NPYNTSLVVCALGNPFKKNA 87
G+ A+EAQL + L Y G L+ LC + N S V C LGNP K+ A
Sbjct: 749 GDDAHEAQLLVMLPDSLHYSGVRALDPAEKPLCLSNENASHVECELGNPMKRGA 802
>sp|Q60677|ITAE_MOUSE Integrin alpha-E OS=Mus musculus GN=Itgae PE=2 SV=2
Length = 1167
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 46/88 (52%), Gaps = 6/88 (6%)
Query: 12 TEMVGSYELLLGQHQEVLLNVSTHNAGESAYEAQLFIAHHPHLSYIGLEG--QRGALCN- 68
T + EL++G +EV +N+S N+GE +Y + + + +L + ++ C+
Sbjct: 827 TTNISQQELVVGVTKEVTMNISLTNSGEDSYMTNMALNYPRNLQFKKIQKPVSPDVQCDD 886
Query: 69 --PYNTSLVV-CALGNPFKKNASSHLKL 93
P + LV+ C +G+P K +S ++ +
Sbjct: 887 PKPVASVLVMNCKIGHPILKRSSVNVSV 914
>sp|Q1QDW1|SSRP_PSYCK SsrA-binding protein OS=Psychrobacter cryohalolentis (strain K5)
GN=smpB PE=3 SV=1
Length = 158
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 20 LLLGQHQEVLLNVSTHNAGESAYEAQLFIAHHPHLSYIGLEGQRGALCNP----YNTSLV 75
L G H + LL+ STH + +S +L + +G Q+G C P + SLV
Sbjct: 62 FLFGAHIQPLLSSSTHVSPDSIRTRKLLLNRREIEKLMGAVNQKGYACVPLSCYWKNSLV 121
Query: 76 VCALG 80
C +G
Sbjct: 122 KCQIG 126
>sp|Q4FUW4|SSRP_PSYA2 SsrA-binding protein OS=Psychrobacter arcticus (strain DSM 17307 /
273-4) GN=smpB PE=3 SV=1
Length = 158
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 20 LLLGQHQEVLLNVSTHNAGESAYEAQLFIAHHPHLSYIGLEGQRGALCNP----YNTSLV 75
L G H + LL+ STH + +S +L + G Q+G C P + SLV
Sbjct: 62 FLFGAHIQPLLSSSTHVSPDSIRTRKLLLNRREIEKLFGAVNQKGYACVPLSCYWKNSLV 121
Query: 76 VCALG 80
C +G
Sbjct: 122 KCQIG 126
>sp|Q3V3R4|ITA1_MOUSE Integrin alpha-1 OS=Mus musculus GN=Itga1 PE=2 SV=2
Length = 1179
Score = 32.7 bits (73), Expect = 0.70, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 20 LLLGQHQEVLLNVS--THNAGESAYEAQLFIAHHPHLSYIGLEGQRGALCNPYNTSLVVC 77
LL+ + Q NVS N G+SAY + + + P+L + G+E + C + + C
Sbjct: 828 LLIVRSQNDKFNVSLTVKNKGDSAYNTRTVVQYSPNLIFSGIEEIQKDSCE--SNQNITC 885
Query: 78 ALGNPF 83
+G PF
Sbjct: 886 RVGYPF 891
>sp|Q61738|ITA7_MOUSE Integrin alpha-7 OS=Mus musculus GN=Itga7 PE=1 SV=3
Length = 1179
Score = 32.7 bits (73), Expect = 0.73, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 38 GESAYEAQLFIAHHPHLSYIG---LEGQRGALCNPYNT-SLVVCALGNPFKKNA 87
G+ A+EAQL + L Y G L+ LC ++ S V C LGNP K+ A
Sbjct: 749 GDDAHEAQLLVTLPASLRYSGVRALDSVEKPLCLSNDSASHVECELGNPMKRGA 802
>sp|P56199|ITA1_HUMAN Integrin alpha-1 OS=Homo sapiens GN=ITGA1 PE=1 SV=2
Length = 1179
Score = 32.3 bits (72), Expect = 0.97, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 19 ELLLGQHQEVLLNVS--THNAGESAYEAQLFIAHHPHLSYIGLEGQRGALCNPYNTSLVV 76
+LL+ + Q NVS N +SAY + + + P+L + G+E + C + +
Sbjct: 828 DLLIVRSQNDKFNVSLTVKNTKDSAYNTRTIVHYSPNLVFSGIEAIQKDSCESNHN--IT 885
Query: 77 CALGNPF 83
C +G PF
Sbjct: 886 CKVGYPF 892
>sp|F1MMS9|ITA3_BOVIN Integrin alpha-3 OS=Bos taurus GN=ITGA3 PE=2 SV=1
Length = 1050
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Query: 33 STHNAGESAYEAQLFIAHHPHLSYIGLEGQRGALCNPYNTSLVVCALGNPFKKNASSHL 91
S AGE A+EA L + P L + N +VC LGNPFK+N L
Sbjct: 661 SRKRAGEDAHEALLTLEVPPTLLLSSVRPPGACQAN----ETIVCELGNPFKRNQRMEL 715
>sp|Q63258|ITA7_RAT Integrin alpha-7 OS=Rattus norvegicus GN=Itga7 PE=1 SV=2
Length = 1135
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 38 GESAYEAQLFIAHHPHLSYIG---LEGQRGALC-NPYNTSLVVCALGNPFKK 85
G+ A+EAQL L Y G L+ LC + N S V C LGNP K+
Sbjct: 704 GDDAHEAQLLATLPASLRYSGVRTLDSVEKPLCLSNENASHVECELGNPMKR 755
>sp|Q62470|ITA3_MOUSE Integrin alpha-3 OS=Mus musculus GN=Itga3 PE=1 SV=1
Length = 1053
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 33 STHNAGESAYEAQLFIAHHPHLSYIGLEGQRGALCNPYNTSLVVCALGNPFKKNASSHL 91
S+ AGE A+EA L P S + L R + N ++C LGNPFK+N L
Sbjct: 663 SSQRAGEDAHEA-LLTLEVP--SALLLSSVRPSGTCQANNETILCELGNPFKRNQRMEL 718
>sp|Q00651|ITA4_MOUSE Integrin alpha-4 OS=Mus musculus GN=Itga4 PE=1 SV=1
Length = 1039
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 20 LLLGQHQEVLLNVSTHNAGESAYEAQLFIAHHPHLSYIGL 59
L +G + ++LNVS NAG+ AYE L + L +I +
Sbjct: 656 LAVGSMKTIMLNVSLFNAGDDAYETTLNVQLPTGLYFIKI 695
>sp|P17852|ITA3_CRIGR Integrin alpha-3 OS=Cricetulus griseus GN=ITGA3 PE=1 SV=3
Length = 1051
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 33 STHNAGESAYEAQLFIAHHPHLSYIGLEGQRGALCNPYNTSLVVCALGNPFKKNASSHL 91
S AGE A+EA L + P L + + C T ++C LGNPFK+N L
Sbjct: 662 SRERAGEDAHEALLTLEVPPALLLSSV--RPSGTCQANET--ILCELGNPFKRNQRMEL 716
>sp|P38570|ITAE_HUMAN Integrin alpha-E OS=Homo sapiens GN=ITGAE PE=1 SV=3
Length = 1179
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Query: 15 VGSYELLLGQHQEVLLNVSTHNAGESAYEAQLFIAHHPHLSYIGLEG--QRGALCN---P 69
V EL++G +E+ LN++ N+GE +Y + + + +L ++ C+ P
Sbjct: 839 VSQQELVVGLTKELTLNINLTNSGEDSYMTSMALNYPRNLQLKRMQKPPSPNIQCDDPQP 898
Query: 70 YNTSLVV-CALGNPFKKNASSHLKL 93
+ L++ C +G+P K +S+H+ +
Sbjct: 899 VASVLIMNCRIGHPVLKRSSAHVSV 923
>sp|P13612|ITA4_HUMAN Integrin alpha-4 OS=Homo sapiens GN=ITGA4 PE=1 SV=3
Length = 1032
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 20 LLLGQHQEVLLNVSTHNAGESAYEAQLFIAHHPHLSYIGL 59
L +G + ++LNVS NAG+ AYE L + L +I +
Sbjct: 649 LAVGSMKTLMLNVSLFNAGDDAYETTLHVKLPVGLYFIKI 688
>sp|P26006|ITA3_HUMAN Integrin alpha-3 OS=Homo sapiens GN=ITGA3 PE=1 SV=5
Length = 1051
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Query: 33 STHNAGESAYEAQLFIAHHPHLSYIGLEGQRGALCNPYNTSLVVCALGNPFKKNASSHL 91
++ +GE A+EA L + P L + N + C LGNPFK+N L
Sbjct: 662 TSERSGEDAHEALLTLVVPPALLLSSVRPPGACQAN----ETIFCELGNPFKRNQRMEL 716
>sp|Q03WU9|TRMB_LEUMM tRNA (guanine-N(7)-)-methyltransferase OS=Leuconostoc
mesenteroides subsp. mesenteroides (strain ATCC 8293 /
NCDO 523) GN=trmB PE=3 SV=1
Length = 219
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 11 STEMVGSYELLLGQHQEVLLNVSTHNAGESAYEAQLFIAHHPHLSYIGLEGQRGALC 67
+T +G ++ L Q Q + L + + G+ + + +AH P ++YIG+E Q A+
Sbjct: 26 ATAQIGQWQSLFDQEQPIHLEIGS---GKGQFILGMALAH-PEINYIGMEIQETAIA 78
>sp|P11688|ITA5_MOUSE Integrin alpha-5 OS=Mus musculus GN=Itga5 PE=1 SV=3
Length = 1053
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 34/83 (40%), Gaps = 8/83 (9%)
Query: 20 LLLGQHQEVLLNVSTHNAGES-AYEAQLFIAHHPHLSYIGLEGQRGAL----CNPY---N 71
+ LG + L N GE AYEA+L + Y GL G C+ +
Sbjct: 669 VYLGDKNALNLTFHAQNLGEGGAYEAELRVTAPLEAEYSGLVRHPGNFSSLSCDYFAVNQ 728
Query: 72 TSLVVCALGNPFKKNASSHLKLR 94
+ +VC LGNP K S LR
Sbjct: 729 SRQLVCDLGNPMKAGTSLWGGLR 751
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.131 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,022,983
Number of Sequences: 539616
Number of extensions: 1154315
Number of successful extensions: 2462
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 2427
Number of HSP's gapped (non-prelim): 54
length of query: 94
length of database: 191,569,459
effective HSP length: 64
effective length of query: 30
effective length of database: 157,034,035
effective search space: 4711021050
effective search space used: 4711021050
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)