Query psy5489
Match_columns 94
No_of_seqs 101 out of 483
Neff 6.8
Searched_HMMs 29240
Date Fri Aug 16 18:48:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5489.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5489hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fcs_A Integrin, alpha 2B; bet 99.8 7.9E-20 2.7E-24 151.3 10.2 88 4-94 610-704 (959)
2 3ije_A Integrin alpha-V; integ 99.8 9.8E-20 3.4E-24 150.7 10.3 88 4-94 604-698 (967)
3 3k6s_A Integrin alpha-X; cell 99.8 6.9E-19 2.3E-23 147.0 9.0 89 4-94 760-862 (1095)
4 3idu_A Uncharacterized protein 82.2 3.3 0.00011 26.4 5.3 41 4-50 17-58 (127)
5 2l0d_A Cell surface protein; s 76.1 9.2 0.00031 23.9 5.9 40 4-49 3-43 (114)
6 3isy_A Bsupi, intracellular pr 73.4 11 0.00037 23.9 5.7 45 1-58 2-46 (120)
7 2kq1_A BH0266 protein; solutio 49.5 9.9 0.00034 23.4 2.2 37 25-62 52-89 (119)
8 3cfu_A Uncharacterized lipopro 45.8 17 0.00059 23.7 3.0 20 25-44 46-65 (159)
9 2xdh_A Cohesin; archaeal prote 43.3 47 0.0016 22.1 4.7 36 26-62 16-51 (163)
10 2l3u_A YBBR family protein; be 42.0 4.1 0.00014 24.5 -0.5 38 25-62 43-80 (98)
11 3zyz_A Beta-D-glucoside glucoh 37.2 41 0.0014 27.1 4.4 29 25-53 612-642 (713)
12 3abz_A Beta-glucosidase I; gly 35.4 42 0.0014 27.7 4.3 29 25-53 734-765 (845)
13 2x41_A Beta-glucosidase; hydro 34.5 60 0.002 26.1 5.0 29 25-53 614-644 (721)
14 3esm_A Uncharacterized protein 33.7 54 0.0018 21.6 3.9 35 27-62 17-51 (152)
15 2kps_A Uncharacterized protein 32.7 3.6 0.00012 24.9 -1.9 35 25-59 43-77 (98)
16 2x3c_A Toxic extracellular end 31.8 56 0.0019 24.0 4.1 18 25-42 35-52 (343)
17 2cir_A Hexose-6-phosphate muta 31.2 1.3E+02 0.0044 20.7 5.9 21 20-41 130-151 (297)
18 1vjj_A Protein-glutamine gluta 31.2 75 0.0026 25.8 5.0 47 5-58 481-527 (692)
19 1g0d_A Protein-glutamine gamma 30.1 88 0.003 25.5 5.2 47 4-58 471-517 (695)
20 3hrz_B Cobra venom factor; ser 29.5 1.2E+02 0.0041 20.8 5.4 32 25-56 95-126 (252)
21 3lyw_A YBBR family protein; st 26.0 35 0.0012 20.4 1.8 39 24-62 39-77 (90)
22 1xq4_A Protein APAG; all beta 24.3 85 0.0029 20.2 3.5 41 2-43 9-50 (139)
23 2q3z_A Transglutaminase 2; tra 23.1 1.1E+02 0.0038 24.8 4.6 40 5-50 472-511 (687)
24 3dcd_A Galactose mutarotase re 23.0 1.7E+02 0.0058 20.6 5.3 16 25-40 119-134 (307)
25 2kut_A Uncharacterized protein 22.9 72 0.0025 20.0 2.9 26 24-49 14-40 (122)
26 1ex0_A Coagulation factor XIII 22.9 1.2E+02 0.0041 24.8 4.8 39 5-50 517-555 (731)
27 1qyn_A Protein-export protein 22.9 76 0.0026 20.7 3.1 18 33-50 47-64 (153)
28 3k25_A SLR1438 protein; struct 22.0 1.9E+02 0.0064 20.0 5.3 20 20-40 136-155 (289)
29 3ndz_E Endoglucanase D; cellot 22.0 1.4E+02 0.0048 18.0 5.4 34 27-60 16-50 (107)
30 3q1n_A Galactose mutarotase re 20.3 2.1E+02 0.0073 19.8 5.3 16 25-40 119-134 (294)
31 3q48_A Chaperone CUPB2; IG fol 20.2 2.3E+02 0.0077 19.7 5.8 33 15-49 33-65 (257)
32 3mwx_A Aldose 1-epimerase; str 20.0 2.1E+02 0.0073 20.0 5.3 21 20-41 150-170 (326)
No 1
>3fcs_A Integrin, alpha 2B; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens}
Probab=99.81 E-value=7.9e-20 Score=151.25 Aligned_cols=88 Identities=33% Similarity=0.510 Sum_probs=76.9
Q ss_pred cceEEEEEeccCCceEEEecccceEEEEEEeEeCCCCCcceEEEEEeCCCceeeeEeec----cceeeccC--C-CceEE
Q psy5489 4 QSLSVRESTEMVGSYELLLGQHQEVLLNVSTHNAGESAYEAQLFIAHHPHLSYIGLEGQ----RGALCNPY--N-TSLVV 76 (94)
Q Consensus 4 ~dL~l~~~~~~~~~~~l~vG~~~~l~l~v~v~N~gEdAY~t~L~v~~P~~L~y~~v~~~----~~~~C~~~--~-~~~v~ 76 (94)
-||+|+++.+. .+++||++++|.|+|+|+|.|||||+|+|+++||++|+|+++... .+++|+.. + ...+.
T Consensus 610 ~dL~l~~~~~~---~~l~vg~~~~l~l~v~v~N~GEdAY~t~l~~~~p~~l~y~~v~~~~~~~~~~~C~~~~~~~~~~v~ 686 (959)
T 3fcs_A 610 PQLQLTASVTG---SPLLVGADNVLELQMDAANEGEGAYEAELAVHLPQGAHYMRALSNVEGFERLICNQKKENETRVVL 686 (959)
T ss_dssp CCEEEEEEEES---CSEETTSCCCEEEEEEEEECSSCBTTEEEEEECCTTEEEEEEEECC--CCBCCEEEECSSSSCEEE
T ss_pred cceEEEEEecC---ceEEecCCcEEEEEEEEecCCCCcccceEEEEeCCCCceeeeecccCCCcCceEeccCCCcceeEE
Confidence 48999999765 368999999999999999999999999999999999999999854 26889863 3 35799
Q ss_pred EEeCCCcCCCCEEEEEEC
Q psy5489 77 CALGNPFKKNASSHLKLR 94 (94)
Q Consensus 77 C~lGnP~~~~~~~~f~l~ 94 (94)
|+|||||+++++++|.|+
T Consensus 687 C~lgnP~~~~~~v~f~l~ 704 (959)
T 3fcs_A 687 CELGNPMKKNAQIGIAML 704 (959)
T ss_dssp EEEETTBCTTEEEEEEEE
T ss_pred eecCCcccCCCeEEEEEE
Confidence 999999999999999874
No 2
>3ije_A Integrin alpha-V; integrin structure, activation, EGF domains, FLIM, cell SIGN cell adhesion, cleavage on PAIR of basic residues; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 4g1e_A* 4g1m_A* 1jv2_A* 1l5g_A* 1m1x_A* 1u8c_A*
Probab=99.81 E-value=9.8e-20 Score=150.67 Aligned_cols=88 Identities=32% Similarity=0.506 Sum_probs=77.0
Q ss_pred cceEEEEEeccCCceEEEecccceEEEEEEeEeCCCCCcceEEEEEeCCCceeeeEeec----cceeeccC--C-CceEE
Q psy5489 4 QSLSVRESTEMVGSYELLLGQHQEVLLNVSTHNAGESAYEAQLFIAHHPHLSYIGLEGQ----RGALCNPY--N-TSLVV 76 (94)
Q Consensus 4 ~dL~l~~~~~~~~~~~l~vG~~~~l~l~v~v~N~gEdAY~t~L~v~~P~~L~y~~v~~~----~~~~C~~~--~-~~~v~ 76 (94)
-||+|+++.+. .++++|+++.|.|+|+|+|.|||||+|+|+++||++|+|+++... .+++|+.. + ...+.
T Consensus 604 ~dL~l~~~~~~---~~~~vg~~~~l~l~v~v~N~gE~Ay~t~l~~~~p~~l~~~~v~~~~~~~~~~~C~~~~~n~~~~~~ 680 (967)
T 3ije_A 604 PKLEVSVDSDQ---KKIYIGDDNPLTLIVKAQNQGEGAYEAELIVSIPLQADFIGVVRNNEALARLSCAFKTENQTRQVV 680 (967)
T ss_dssp CCEEEEEECSS---CEEETTSCEEEEEEEEEEECSSCEESCEEEEECCTTEEEEEECCSCTTSBCCEEEEECSSSCCEEE
T ss_pred cCEEEEEEeCC---ceEEecCCcEEEEEEEEEeCCCCcccceEEEEeCCCCCeeeeecccCCcccceeecCCCCCceEEE
Confidence 48999999754 589999999999999999999999999999999999999999864 26899852 3 34799
Q ss_pred EEeCCCcCCCCEEEEEEC
Q psy5489 77 CALGNPFKKNASSHLKLR 94 (94)
Q Consensus 77 C~lGnP~~~~~~~~f~l~ 94 (94)
|+|||||+++++++|.|+
T Consensus 681 C~lgnP~~~~~~v~f~l~ 698 (967)
T 3ije_A 681 CDLGNPMKAGTQLLAGLR 698 (967)
T ss_dssp EECCSEECTTCEEEEEEE
T ss_pred eeCCCCcCCCCEEEEEEE
Confidence 999999988999999874
No 3
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=99.77 E-value=6.9e-19 Score=146.99 Aligned_cols=89 Identities=21% Similarity=0.268 Sum_probs=75.6
Q ss_pred cceEEEEEeccCCceEEEecccceEEEEEEeEeCCCCCcceEEEEEeCCCceeeeEeec--------cceeeccC-----
Q psy5489 4 QSLSVRESTEMVGSYELLLGQHQEVLLNVSTHNAGESAYEAQLFIAHHPHLSYIGLEGQ--------RGALCNPY----- 70 (94)
Q Consensus 4 ~dL~l~~~~~~~~~~~l~vG~~~~l~l~v~v~N~gEdAY~t~L~v~~P~~L~y~~v~~~--------~~~~C~~~----- 70 (94)
-||+|+++... .+.+++|.++.|.|+|+|+|.|||||+|+|+++||++|+|+++... .+++|+..
T Consensus 760 ~dL~l~~~~~~--~~~l~~g~~~~l~l~v~v~N~gEdAy~t~l~~~~p~~l~~~~v~~~~~~~~~~~~~~~C~~~~~~~~ 837 (1095)
T 3k6s_A 760 DNLGISFSFPG--LKSLLVGSNLELNAEVMVWNDGEDSYGTTITFSHPAGLSYRYVAEGQKQGQLRSLHLTCDSAPVGSQ 837 (1095)
T ss_dssp CCCCEEEECTT--CCSCEESSCCEEEEEEEECCCSSCBSSCEEEEEECTTEEEECCCCCTTCCSSCCCCCEEEEEECSSS
T ss_pred cCeeEEEEeCC--cEEEEEcCCCEEEEEEEEEeCCCCcccceEEEEecCCCceeeeeccccccccCCccceeecCCcccC
Confidence 48999998643 4579999999999999999999999999999999999999998732 25899962
Q ss_pred CCceEEEEeCCCc-CCCCEEEEEEC
Q psy5489 71 NTSLVVCALGNPF-KKNASSHLKLR 94 (94)
Q Consensus 71 ~~~~v~C~lGnP~-~~~~~~~f~l~ 94 (94)
+.+.+.|+||||| +++++++|.|+
T Consensus 838 ~~~~~~C~lg~P~~~~~~~~~f~~~ 862 (1095)
T 3k6s_A 838 GTWSTSCRINHLIFRGGAQITFLAT 862 (1095)
T ss_dssp SCEEEEEECTTSCBCTTCCEEEEEE
T ss_pred cceeEEeccCCccccCCCEEEEEEE
Confidence 2458999999996 66899999874
No 4
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=82.22 E-value=3.3 Score=26.45 Aligned_cols=41 Identities=15% Similarity=0.126 Sum_probs=26.0
Q ss_pred cceEEEEEeccCCceEEEecccceEEEEEEeEeCCCC-CcceEEEEEe
Q psy5489 4 QSLSVRESTEMVGSYELLLGQHQEVLLNVSTHNAGES-AYEAQLFIAH 50 (94)
Q Consensus 4 ~dL~l~~~~~~~~~~~l~vG~~~~l~l~v~v~N~gEd-AY~t~L~v~~ 50 (94)
-||.+..+.+ -.+...+.+.++++|+|.|.. |-...+.+..
T Consensus 17 pDL~V~is~P------~~v~~G~~~ti~vtV~N~G~~~a~~~~V~lyv 58 (127)
T 3idu_A 17 PDLTVEIKGP------DVVGVNKLAEYEVHVKNLGGIGVPSTKVRVYI 58 (127)
T ss_dssp CCEEEEEESC------SEECTTCCEEEEEEEEECSSSCEEEEEEEEEE
T ss_pred CCeEEEecCC------CcccCCCEEEEEEEEEECCCCccCCcEEEEEE
Confidence 4787744321 133445889999999999975 4444455444
No 5
>2l0d_A Cell surface protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Methanosarcina acetivorans}
Probab=76.12 E-value=9.2 Score=23.92 Aligned_cols=40 Identities=10% Similarity=0.081 Sum_probs=26.0
Q ss_pred cceEEEEEeccCCceEEEecccceEEEEEEeEeCCCC-CcceEEEEE
Q psy5489 4 QSLSVRESTEMVGSYELLLGQHQEVLLNVSTHNAGES-AYEAQLFIA 49 (94)
Q Consensus 4 ~dL~l~~~~~~~~~~~l~vG~~~~l~l~v~v~N~gEd-AY~t~L~v~ 49 (94)
.||.+...+.. . +-..+.+.++++|+|.|+. |-...+.+.
T Consensus 3 PDL~vt~itP~----~--~~~~~~~ti~atVkN~G~~~a~~~~V~ly 43 (114)
T 2l0d_A 3 PDLVPVSLTPV----T--VVPNTVNTMTATIENQGNKDSTSFNVSLL 43 (114)
T ss_dssp CCEEEEEEECS----E--ECTTSEEEEEEEEEECSSSCBCCEEEEEE
T ss_pred CCcEEEeccCC----C--cCCCCeEEEEEEEEECCCCCCCCEEEEEE
Confidence 37877766422 2 3445888999999999974 444444444
No 6
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=73.42 E-value=11 Score=23.93 Aligned_cols=45 Identities=16% Similarity=0.146 Sum_probs=31.9
Q ss_pred CCCcceEEEEEeccCCceEEEecccceEEEEEEeEeCCCCCcceEEEEEeCCCceeee
Q psy5489 1 MKPQSLSVRESTEMVGSYELLLGQHQEVLLNVSTHNAGESAYEAQLFIAHHPHLSYIG 58 (94)
Q Consensus 1 ~~~~dL~l~~~~~~~~~~~l~vG~~~~l~l~v~v~N~gEdAY~t~L~v~~P~~L~y~~ 58 (94)
|.-++|.++++.+. ....+.+.++|.|.++.+. .+.||++..|-=
T Consensus 2 ~~~~~l~~~v~~~~---------~g~~v~~~ltv~N~s~~~v----~l~f~Sgq~~Df 46 (120)
T 3isy_A 2 MENQEVVLSIDAIQ---------EPEQIKFNMSLKNQSERAI----EFQFSTGQKFEL 46 (120)
T ss_dssp --CCSEEEEEEEEE---------CSSCEEEEEEEEECSSSCE----EEEESSSCCEEE
T ss_pred ccccEEEEEEeecc---------CCCeEEEEEEEEcCCCCcE----EEEeCCCCEEEE
Confidence 44567777777543 2358889999999998875 578888887733
No 7
>2kq1_A BH0266 protein; solution NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Bacillus halodurans}
Probab=49.50 E-value=9.9 Score=23.44 Aligned_cols=37 Identities=16% Similarity=0.151 Sum_probs=30.8
Q ss_pred cceEEEEEEeEeCCCCCcceEEEEE-eCCCceeeeEeec
Q psy5489 25 HQEVLLNVSTHNAGESAYEAQLFIA-HHPHLSYIGLEGQ 62 (94)
Q Consensus 25 ~~~l~l~v~v~N~gEdAY~t~L~v~-~P~~L~y~~v~~~ 62 (94)
.+.+.+.+.++|.++.-|.-.+.+. +|+++. ..+.+.
T Consensus 52 ~~~i~~~vDLs~l~~G~~~vpv~v~~lp~~v~-v~v~P~ 89 (119)
T 2kq1_A 52 RPSYEVFVDLTEAGEGSHTVDVEHRGFPGDLA-VTVEPR 89 (119)
T ss_dssp CCCCEEEEECTTCCBEEEEEECEEESSCTTSE-EEESCC
T ss_pred ccCEEEEEECccCCCCeEEEEEEEecCCCCeE-EEEcCC
Confidence 4778888889999999999999999 999998 666543
No 8
>3cfu_A Uncharacterized lipoprotein YJHA; YJHA_bacsu, SR562, NESG, structural genomics, PSI-2, protein structure initiative; 2.40A {Bacillus subtilis}
Probab=45.76 E-value=17 Score=23.74 Aligned_cols=20 Identities=20% Similarity=0.461 Sum_probs=16.7
Q ss_pred cceEEEEEEeEeCCCCCcce
Q psy5489 25 HQEVLLNVSTHNAGESAYEA 44 (94)
Q Consensus 25 ~~~l~l~v~v~N~gEdAY~t 44 (94)
.+-+.++|+|+|.|++++..
T Consensus 46 ~~fviV~VTIeN~g~e~~~~ 65 (159)
T 3cfu_A 46 EERLIIEVTMENIGEDSISY 65 (159)
T ss_dssp SEEEEEEEEEEECSSSCEEE
T ss_pred CEEEEEEEEEEECCCCceee
Confidence 36789999999999988754
No 9
>2xdh_A Cohesin; archaeal protein, cell adhesion; 1.96A {Archaeoglobus fulgidus}
Probab=43.25 E-value=47 Score=22.09 Aligned_cols=36 Identities=14% Similarity=0.132 Sum_probs=29.9
Q ss_pred ceEEEEEEeEeCCCCCcceEEEEEeCCCceeeeEeec
Q psy5489 26 QEVLLNVSTHNAGESAYEAQLFIAHHPHLSYIGLEGQ 62 (94)
Q Consensus 26 ~~l~l~v~v~N~gEdAY~t~L~v~~P~~L~y~~v~~~ 62 (94)
+.+.+.|.++|. .|-|.+-|.+.||.-|++..+..-
T Consensus 16 stfqV~V~ienA-~~v~S~pl~LsYP~vLelv~V~~G 51 (163)
T 2xdh_A 16 SDIQVPVKIENA-DKVGSINLILSYPNVLEVEDVLQG 51 (163)
T ss_dssp CEEEEEEEEEEE-EEEEEEEEEEECCTTEEEEEEEEC
T ss_pred ceEEEEEEecCC-cccccccEEEecCceeeeccCCCC
Confidence 368888888884 568899999999999999888754
No 10
>2l3u_A YBBR family protein; beta strand, figure eight, figure 8, structural genomics, PS biology, protein structure initiative; NMR {Desulfitobacterium hafniense}
Probab=42.05 E-value=4.1 Score=24.45 Aligned_cols=38 Identities=3% Similarity=0.148 Sum_probs=31.9
Q ss_pred cceEEEEEEeEeCCCCCcceEEEEEeCCCceeeeEeec
Q psy5489 25 HQEVLLNVSTHNAGESAYEAQLFIAHHPHLSYIGLEGQ 62 (94)
Q Consensus 25 ~~~l~l~v~v~N~gEdAY~t~L~v~~P~~L~y~~v~~~ 62 (94)
.+.+.+.+.++|.++.-|.-.+.+..|+++...++.+.
T Consensus 43 ~~di~~~vDls~l~~G~~~v~v~v~~P~~~~~v~i~P~ 80 (98)
T 2l3u_A 43 KEQISLWIDATGKAVGEHTVKIYWQLPAGIEMVSIPDV 80 (98)
T ss_dssp GGGCBCEEECSSCCSBCCEECCCCBCSSSCEEEECCCE
T ss_pred hhhEEEEEEecCCcCceEEEeEEEECCCCcEEEEeCCC
Confidence 45688889999999999999999999999888776543
No 11
>3zyz_A Beta-D-glucoside glucohydrolase; HET: NAG BGC; 2.10A {Hypocrea jecorina} PDB: 3zz1_A* 4i8d_A*
Probab=37.20 E-value=41 Score=27.11 Aligned_cols=29 Identities=28% Similarity=0.338 Sum_probs=23.1
Q ss_pred cceEEEEEEeEeCCCC--CcceEEEEEeCCC
Q psy5489 25 HQEVLLNVSTHNAGES--AYEAQLFIAHHPH 53 (94)
Q Consensus 25 ~~~l~l~v~v~N~gEd--AY~t~L~v~~P~~ 53 (94)
...+.++|+|+|.|+- +.-.||++..|..
T Consensus 612 ~~~~~vsv~VtNtG~~~G~EVvQlYv~~~~~ 642 (713)
T 3zyz_A 612 QNVATVTVDIANSGQVTGAEVAQLYITYPSS 642 (713)
T ss_dssp SEEEEEEEEEEECSSSCEEEEEEEEEECCTT
T ss_pred CCeEEEEEEEEeCCCCccceeeeeeeecCCC
Confidence 4579999999999876 4567899998753
No 12
>3abz_A Beta-glucosidase I; glycoside hydrolase family3 beta-glucosidase, PA14 domain, H; 2.15A {Kluyveromyces marxianus} PDB: 3ac0_A*
Probab=35.38 E-value=42 Score=27.65 Aligned_cols=29 Identities=14% Similarity=0.343 Sum_probs=23.3
Q ss_pred cceEEEEEEeEeCC-C--CCcceEEEEEeCCC
Q psy5489 25 HQEVLLNVSTHNAG-E--SAYEAQLFIAHHPH 53 (94)
Q Consensus 25 ~~~l~l~v~v~N~g-E--dAY~t~L~v~~P~~ 53 (94)
...+.++|+|+|.| + .+.-.||++..|..
T Consensus 734 ~~~~~v~v~V~NtG~~~~G~eVvQlYv~~~~~ 765 (845)
T 3abz_A 734 DDKIAISVDVKNTGDKFAGSEVVQVYFSALNS 765 (845)
T ss_dssp SSEEEEEEEEEECCSSCCEEEEEEEEEEESSC
T ss_pred CCeEEEEEEEEECCcCCCcceeeeeeEeCCCC
Confidence 45799999999999 4 46667899998853
No 13
>2x41_A Beta-glucosidase; hydrolase, TIM barrel fold, fibronectin type III fold; HET: BGC; 2.05A {Thermotoga neapolitana} PDB: 2x40_A* 2x42_A*
Probab=34.53 E-value=60 Score=26.07 Aligned_cols=29 Identities=14% Similarity=0.188 Sum_probs=23.2
Q ss_pred cceEEEEEEeEeCCCC--CcceEEEEEeCCC
Q psy5489 25 HQEVLLNVSTHNAGES--AYEAQLFIAHHPH 53 (94)
Q Consensus 25 ~~~l~l~v~v~N~gEd--AY~t~L~v~~P~~ 53 (94)
...+.++|+|+|.|+- +.-.||++..|.+
T Consensus 614 ~~~~~v~v~VtNtG~~~G~eVvQlYv~~~~~ 644 (721)
T 2x41_A 614 GETLRVQYRIENTGGRAGKEVSQVYIKAPKG 644 (721)
T ss_dssp SSEEEEEEEEEECSSSCBCCEEEEEEECCCS
T ss_pred CCeEEEEEEEEECCCCCCcEEeeEEEccCCC
Confidence 4579999999999875 5667899998863
No 14
>3esm_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein structure initiative; 1.65A {Nocardia farcinica}
Probab=33.71 E-value=54 Score=21.56 Aligned_cols=35 Identities=9% Similarity=0.058 Sum_probs=27.0
Q ss_pred eEEEEEEeEeCCCCCcceEEEEEeCCCceeeeEeec
Q psy5489 27 EVLLNVSTHNAGESAYEAQLFIAHHPHLSYIGLEGQ 62 (94)
Q Consensus 27 ~l~l~v~v~N~gEdAY~t~L~v~~P~~L~y~~v~~~ 62 (94)
...+++.|.|-.|.|=-++|.|.+| ++.+.+.+..
T Consensus 17 ~~~~tfrVP~e~d~a~Ttkv~V~lP-gv~~v~~~p~ 51 (152)
T 3esm_A 17 YSVVTFRVPTESETAATTAMTVTLP-NVRSARTEPM 51 (152)
T ss_dssp CEEEEEEEECCCSSCCEEEEEEEEE-EESEEEECCC
T ss_pred cEEEEEEecCCCCCCCceEEEEEcC-CccccceecC
Confidence 3455667779888888999999999 8887776543
No 15
>2kps_A Uncharacterized protein; beta strand, figure eight, figure 8, structural genomics, PSI-2, protein structure initiative; NMR {Desulfitobacterium hafniense Y51} PDB: 2l3u_A
Probab=32.66 E-value=3.6 Score=24.94 Aligned_cols=35 Identities=3% Similarity=0.178 Sum_probs=29.5
Q ss_pred cceEEEEEEeEeCCCCCcceEEEEEeCCCceeeeE
Q psy5489 25 HQEVLLNVSTHNAGESAYEAQLFIAHHPHLSYIGL 59 (94)
Q Consensus 25 ~~~l~l~v~v~N~gEdAY~t~L~v~~P~~L~y~~v 59 (94)
.+.+.+.+.+++.+|.-|+-.+.+.+|+++...+.
T Consensus 43 ~~di~a~vDLs~l~~G~~~vpv~v~lP~gv~vv~~ 77 (98)
T 2kps_A 43 KEQISLWIDATGKAVGEHTVKIYWQLPAGIEMVSI 77 (98)
T ss_dssp TTTSBCEECCTTCCSSCEEEECCCBCSSCCCCCCC
T ss_pred hhhEEEEEECCCCCCCeEEEeEEEECCCCEEEEec
Confidence 45677888999999999999999999999877553
No 16
>2x3c_A Toxic extracellular endopeptidase; hydrolase; 1.99A {Aeromonas salmonicida subsp} PDB: 2x3a_A 2x3b_A
Probab=31.77 E-value=56 Score=23.95 Aligned_cols=18 Identities=22% Similarity=0.468 Sum_probs=15.4
Q ss_pred cceEEEEEEeEeCCCCCc
Q psy5489 25 HQEVLLNVSTHNAGESAY 42 (94)
Q Consensus 25 ~~~l~l~v~v~N~gEdAY 42 (94)
...+.|.++|+|.|+..+
T Consensus 35 ~~~~~vk~tvtN~g~~~~ 52 (343)
T 2x3c_A 35 TDDVRVNLTLTNTGDKPI 52 (343)
T ss_dssp SSCCEEEEEEEECSSSCE
T ss_pred CCCeEEEEEEEeCCCCce
Confidence 567899999999999874
No 17
>2cir_A Hexose-6-phosphate mutarotase; hypothetical protein, isomerase; HET: BG6; 1.60A {Saccharomyces cerevisiae} PDB: 2ciq_A* 2cis_A*
Probab=31.24 E-value=1.3e+02 Score=20.74 Aligned_cols=21 Identities=14% Similarity=0.238 Sum_probs=16.2
Q ss_pred EEecccceEEEEEEeEeCC-CCC
Q psy5489 20 LLLGQHQEVLLNVSTHNAG-ESA 41 (94)
Q Consensus 20 l~vG~~~~l~l~v~v~N~g-EdA 41 (94)
+.+.. +.|.++.+++|.+ +.+
T Consensus 130 y~L~~-~~L~i~~~~~N~~~d~~ 151 (297)
T 2cir_A 130 VELGS-DYLKTAIEVENTSSSKE 151 (297)
T ss_dssp EEECS-SEEEEEEEEECCCSSCC
T ss_pred EEEcC-CEEEEEEEEEcCCCCcc
Confidence 45554 7899999999988 653
No 18
>1vjj_A Protein-glutamine glutamyltransferase E; transglutaminase 3, X-RAY crystallography, metalloenzyme, calcium ION; HET: GDP; 1.90A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1sgx_A* 1l9m_A 1l9n_A* 1nud_A 1nuf_A 1nug_A 1rle_A*
Probab=31.20 E-value=75 Score=25.85 Aligned_cols=47 Identities=19% Similarity=0.162 Sum_probs=30.7
Q ss_pred ceEEEEEeccCCceEEEecccceEEEEEEeEeCCCCCcceEEEEEeCCCceeee
Q psy5489 5 SLSVRESTEMVGSYELLLGQHQEVLLNVSTHNAGESAYEAQLFIAHHPHLSYIG 58 (94)
Q Consensus 5 dL~l~~~~~~~~~~~l~vG~~~~l~l~v~v~N~gEdAY~t~L~v~~P~~L~y~~ 58 (94)
|+.+++.... ...+| +.+.|.+.+.|.....+..++.+.. ..+.|.|
T Consensus 481 ~v~~~~~~~~----~~~~G--~df~v~l~~~N~s~~~~~v~~~l~a-~~v~YtG 527 (692)
T 1vjj_A 481 SIIGKLKVAG----MLAVG--KEVNLVLLLKNLSRDTKTVTVNMTA-WTIIYNG 527 (692)
T ss_dssp SEEEEEEECS----CCBTT--SCEEEEEEEEECSSSCEEEEEEEEE-EEECTTC
T ss_pred CeEEEEEcCC----CCCCC--CCEEEEEEEEECCCCCEEEEEEEEE-EEEeeCC
Confidence 4555555322 35567 7788888999998888887777654 3334433
No 19
>1g0d_A Protein-glutamine gamma-glutamyltransferase; tissue transglutaminase,acyltransferase; 2.50A {Pagrus major} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4
Probab=30.10 E-value=88 Score=25.46 Aligned_cols=47 Identities=19% Similarity=0.234 Sum_probs=30.3
Q ss_pred cceEEEEEeccCCceEEEecccceEEEEEEeEeCCCCCcceEEEEEeCCCceeee
Q psy5489 4 QSLSVRESTEMVGSYELLLGQHQEVLLNVSTHNAGESAYEAQLFIAHHPHLSYIG 58 (94)
Q Consensus 4 ~dL~l~~~~~~~~~~~l~vG~~~~l~l~v~v~N~gEdAY~t~L~v~~P~~L~y~~ 58 (94)
.|+.+++.... .. +| +.+.|.+.++|.....+..++.+.. ..+.|.|
T Consensus 471 ~~v~~~i~~~~----~~-~G--~df~v~v~~~N~s~~~~~v~~~l~a-~~v~YtG 517 (695)
T 1g0d_A 471 GRLQLSIKHAQ----PV-FG--TDFDVIVEVKNEGGRDAHAQLTMLA-MAVTYNS 517 (695)
T ss_dssp -CEEEEEEECC----CB-TT--CCEEEEEEEEECSSSCEEEEEEEEE-EEECTTC
T ss_pred CCeEEEEEeCC----CC-CC--CCEEEEEEEEECCCCCEEEEEEEEE-EEEeeCC
Confidence 45666666432 34 77 7788888899988888877777654 3334433
No 20
>3hrz_B Cobra venom factor; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Naja kaouthia} PDB: 3frp_G* 3hs0_B*
Probab=29.46 E-value=1.2e+02 Score=20.84 Aligned_cols=32 Identities=13% Similarity=0.149 Sum_probs=26.4
Q ss_pred cceEEEEEEeEeCCCCCcceEEEEEeCCCcee
Q psy5489 25 HQEVLLNVSTHNAGESAYEAQLFIAHHPHLSY 56 (94)
Q Consensus 25 ~~~l~l~v~v~N~gEdAY~t~L~v~~P~~L~y 56 (94)
.+.+.+.++|.|..+.+-+.++.+...+++.+
T Consensus 95 GE~~~l~~~V~Ny~~~~~~v~V~l~~~~~~~~ 126 (252)
T 3hrz_B 95 NEQVEIRAILHNYVNEDIYVRVELLYNPAFCS 126 (252)
T ss_dssp TCCEEEEEEEEECSSSCEEEEEEECCCTTEEE
T ss_pred CCEEEEEEEEEcccCceEEEEEEEEcCCceEe
Confidence 37889999999999999888888887776554
No 21
>3lyw_A YBBR family protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.90A {Desulfitobacterium hafniense} PDB: 2kpu_A 2l5n_A
Probab=25.97 E-value=35 Score=20.40 Aligned_cols=39 Identities=8% Similarity=0.187 Sum_probs=29.8
Q ss_pred ccceEEEEEEeEeCCCCCcceEEEEEeCCCceeeeEeec
Q psy5489 24 QHQEVLLNVSTHNAGESAYEAQLFIAHHPHLSYIGLEGQ 62 (94)
Q Consensus 24 ~~~~l~l~v~v~N~gEdAY~t~L~v~~P~~L~y~~v~~~ 62 (94)
....+...|.+++.+|.-+.-.+.+..|+|+...++.+.
T Consensus 39 ~~~di~A~VDLsg~~~G~~~~~V~v~~P~G~~lv~vsP~ 77 (90)
T 3lyw_A 39 NVNELFAYVDLSGSEPGEHDYEVKVEPIPNIKIVEISPR 77 (90)
T ss_dssp CSTTCEEEEECTTCCSEEEEEECEECCCTTEEEEEEESS
T ss_pred ChHHEEEEEECcCCCCCcEeEEEEEECCCCCEEEEEccc
Confidence 346677777888877776777777899999999888754
No 22
>1xq4_A Protein APAG; all beta protein, structural genomics, protein structure initiative, PSI, northeast structural genomics consortium, NESG; 2.70A {Bordetella pertussis} SCOP: b.1.23.1
Probab=24.29 E-value=85 Score=20.20 Aligned_cols=41 Identities=22% Similarity=0.219 Sum_probs=22.7
Q ss_pred CCcceEEEEEeccCCceEEEec-ccceEEEEEEeEeCCCCCcc
Q psy5489 2 KPQSLSVRESTEMVGSYELLLG-QHQEVLLNVSTHNAGESAYE 43 (94)
Q Consensus 2 ~~~dL~l~~~~~~~~~~~l~vG-~~~~l~l~v~v~N~gEdAY~ 43 (94)
...+.++++++..... ..... ..--+.=.|+|+|.|+.+.+
T Consensus 9 tT~gI~V~V~~~y~~e-~S~p~~~~y~FaY~ItI~N~~~~~vQ 50 (139)
T 1xq4_A 9 KPYDLTVSVTPRYVPE-QSDPSQQQYVFAYTVRITNTGSHPAQ 50 (139)
T ss_dssp CSSCEEEEEEEEECGG-GCBGGGTBEEEEEEEEEEECSSSCEE
T ss_pred ccCCEEEEEEEEEchh-hCCCCCCEEEEEEEEEEEeCCCCCEE
Confidence 3457777777522100 00001 12247888999999987643
No 23
>2q3z_A Transglutaminase 2; transglutaminase 2, tissue transglutaminase, TG2, transferas; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1kv3_A 3ly6_A*
Probab=23.10 E-value=1.1e+02 Score=24.83 Aligned_cols=40 Identities=13% Similarity=0.260 Sum_probs=26.9
Q ss_pred ceEEEEEeccCCceEEEecccceEEEEEEeEeCCCCCcceEEEEEe
Q psy5489 5 SLSVRESTEMVGSYELLLGQHQEVLLNVSTHNAGESAYEAQLFIAH 50 (94)
Q Consensus 5 dL~l~~~~~~~~~~~l~vG~~~~l~l~v~v~N~gEdAY~t~L~v~~ 50 (94)
|+.+++.... ...+| +.+.+.+.+.|.....+..++.+..
T Consensus 472 ~v~~~~~~~~----~~~~G--~df~v~v~~~N~s~~~~~v~~~l~a 511 (687)
T 2q3z_A 472 GMAMRIRVGQ----SMNMG--SDFDVFAHITNNTAEEYVCRLLLCA 511 (687)
T ss_dssp CEEEEEECCS----CCBTT--CCEEEEEEEEECSSSCEEEEEEEEE
T ss_pred ceEEEEEeCC----CCcCC--CCEEEEEEEEECCCCCEEEEEEEEE
Confidence 5555555322 35677 6788888999988777777766553
No 24
>3dcd_A Galactose mutarotase related enzyme; Q5FKD7 LAR33 NESG X-RAY, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Lactobacillus acidophilus}
Probab=23.00 E-value=1.7e+02 Score=20.55 Aligned_cols=16 Identities=19% Similarity=0.129 Sum_probs=13.4
Q ss_pred cceEEEEEEeEeCCCC
Q psy5489 25 HQEVLLNVSTHNAGES 40 (94)
Q Consensus 25 ~~~l~l~v~v~N~gEd 40 (94)
.+.|.++.+++|.|+.
T Consensus 119 ~~~L~i~~~v~N~g~~ 134 (307)
T 3dcd_A 119 NNLLEENFSVVNKSDE 134 (307)
T ss_dssp TTEEEEEEEEEECSSS
T ss_pred CCEEEEEEEEECCCCC
Confidence 5789999999997765
No 25
>2kut_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Geobacter metallireducens}
Probab=22.90 E-value=72 Score=20.02 Aligned_cols=26 Identities=15% Similarity=0.284 Sum_probs=17.7
Q ss_pred ccceEEEEEEeEeCCCC-CcceEEEEE
Q psy5489 24 QHQEVLLNVSTHNAGES-AYEAQLFIA 49 (94)
Q Consensus 24 ~~~~l~l~v~v~N~gEd-AY~t~L~v~ 49 (94)
....+.++++|+|.|.- |-...+.++
T Consensus 14 ~g~~vTvsatVkN~Gt~~s~a~~V~~y 40 (122)
T 2kut_A 14 EGEEITVSARVTNRGAAEAHNVPVAVY 40 (122)
T ss_dssp TTCEEEEEEEEECCSSSCBCCCCEEEC
T ss_pred CCCeEEEEEEEEeCCCcccCcEEEEEE
Confidence 45889999999999865 333334443
No 26
>1ex0_A Coagulation factor XIII A chain; transglutaminase, blood coagulation, mutant, W279F, oxyanion, transferase; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1evu_A 1fie_A 1f13_A 1ggt_A 1ggu_A 1ggy_A 1qrk_A
Probab=22.87 E-value=1.2e+02 Score=24.83 Aligned_cols=39 Identities=13% Similarity=0.339 Sum_probs=27.8
Q ss_pred ceEEEEEeccCCceEEEecccceEEEEEEeEeCCCCCcceEEEEEe
Q psy5489 5 SLSVRESTEMVGSYELLLGQHQEVLLNVSTHNAGESAYEAQLFIAH 50 (94)
Q Consensus 5 dL~l~~~~~~~~~~~l~vG~~~~l~l~v~v~N~gEdAY~t~L~v~~ 50 (94)
|+.+++.. . ...+| +.+.|.+.+.|.....+..++.+..
T Consensus 517 ~v~~~i~~-~----~~~iG--~df~v~l~~~N~s~~~~~v~~~l~a 555 (731)
T 1ex0_A 517 NVDMDFEV-E----NAVLG--KDFKLSITFRNNSHNRYTITAYLSA 555 (731)
T ss_dssp CEEEEEEE-C----CCBTT--CCEEEEEEEEECSSSCEEEEEEEEE
T ss_pred CeEEEEec-C----CCCCC--CCEEEEEEEEECCCCCEEEEEEEEE
Confidence 55565554 2 35577 6788888999998888888777654
No 27
>1qyn_A Protein-export protein SECB; tetramer, greek KEY beta sheet, chaperone; 2.35A {Escherichia coli} SCOP: d.33.1.1
Probab=22.86 E-value=76 Score=20.72 Aligned_cols=18 Identities=17% Similarity=0.338 Sum_probs=11.2
Q ss_pred EeEeCCCCCcceEEEEEe
Q psy5489 33 STHNAGESAYEAQLFIAH 50 (94)
Q Consensus 33 ~v~N~gEdAY~t~L~v~~ 50 (94)
.....+|+-|+..|.++.
T Consensus 47 ~a~~l~e~~~EV~L~v~v 64 (153)
T 1qyn_A 47 ASSQLADDVYEVVLRVTV 64 (153)
T ss_dssp EEEEEETTEEEEEEEEEE
T ss_pred cceEcCCCeEEEEEEEEE
Confidence 334456777777766665
No 28
>3k25_A SLR1438 protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, SGR112, P73504_SYNY3; 2.55A {Synechocystis SP}
Probab=22.04 E-value=1.9e+02 Score=19.99 Aligned_cols=20 Identities=15% Similarity=0.230 Sum_probs=15.6
Q ss_pred EEecccceEEEEEEeEeCCCC
Q psy5489 20 LLLGQHQEVLLNVSTHNAGES 40 (94)
Q Consensus 20 l~vG~~~~l~l~v~v~N~gEd 40 (94)
+.+. .+.|.++.+++|.|+.
T Consensus 136 y~L~-~~~L~i~~~~~N~~~~ 155 (289)
T 3k25_A 136 YQLQ-GHSLRIEQRIANLGDQ 155 (289)
T ss_dssp EEEE-TTEEEEEEEEEECSSS
T ss_pred EEEe-CCEEEEEEEEEcCCCC
Confidence 3443 4789999999998876
No 29
>3ndz_E Endoglucanase D; cellotriose, xylanase, carbohydrate binding D glucanase, hydrolase; HET: CT3; 2.08A {Clostridium cellulovorans} PDB: 3ndy_E*
Probab=22.04 E-value=1.4e+02 Score=18.03 Aligned_cols=34 Identities=15% Similarity=0.093 Sum_probs=26.0
Q ss_pred eEEEEEEeEeCCCCCcc-eEEEEEeCCCceeeeEe
Q psy5489 27 EVLLNVSTHNAGESAYE-AQLFIAHHPHLSYIGLE 60 (94)
Q Consensus 27 ~l~l~v~v~N~gEdAY~-t~L~v~~P~~L~y~~v~ 60 (94)
-+..+|+|+|.|..|-. =+|.+.+|.+-......
T Consensus 16 Gf~~~vtVtN~g~~~i~gWtv~~~~p~g~~it~~W 50 (107)
T 3ndz_E 16 GASVNVTIKNNGTTPINGWTLKWTMPINQTITNMW 50 (107)
T ss_dssp EEEEEEEEEECSSSCEESCEEEEECCTTEEEEEEE
T ss_pred CEEEEEEEEeCCCCcccCcEEEEEcCCCCEEeccc
Confidence 37778999999977643 56999999887775554
No 30
>3q1n_A Galactose mutarotase related enzyme; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 1.61A {Lactobacillus casei}
Probab=20.30 E-value=2.1e+02 Score=19.79 Aligned_cols=16 Identities=6% Similarity=0.113 Sum_probs=13.4
Q ss_pred cceEEEEEEeEeCCCC
Q psy5489 25 HQEVLLNVSTHNAGES 40 (94)
Q Consensus 25 ~~~l~l~v~v~N~gEd 40 (94)
.+.|.++.+++|.++.
T Consensus 119 ~~~L~i~~~~~N~~~~ 134 (294)
T 3q1n_A 119 DGGLSVHYTVTNDDSK 134 (294)
T ss_dssp TTEEEEEEEEEECSSS
T ss_pred CCEEEEEEEEEcCCCC
Confidence 4789999999998765
No 31
>3q48_A Chaperone CUPB2; IG fold, periplasmic chaperone; 2.50A {Pseudomonas aeruginosa}
Probab=20.19 E-value=2.3e+02 Score=19.72 Aligned_cols=33 Identities=18% Similarity=0.278 Sum_probs=22.5
Q ss_pred CCceEEEecccceEEEEEEeEeCCCCCcceEEEEE
Q psy5489 15 VGSYELLLGQHQEVLLNVSTHNAGESAYEAQLFIA 49 (94)
Q Consensus 15 ~~~~~l~vG~~~~l~l~v~v~N~gEdAY~t~L~v~ 49 (94)
.++..++-++++. .++.|.|.++..|..|.-+.
T Consensus 33 ~~TRvIy~~~~k~--~sl~l~N~~~~P~LvQsWid 65 (257)
T 3q48_A 33 QGTRVVFPASERE--VTLRVSNTSGTPVLAQAWID 65 (257)
T ss_dssp SCSEEEEETTCSE--EEEEEEECSSSCEEEEEEEE
T ss_pred cceEEEEeCCCcE--EEEEEEeCCCCeEEEEEEEE
Confidence 3344444456666 45677899999999888776
No 32
>3mwx_A Aldose 1-epimerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, isomerase; HET: MSE; 1.45A {Bacillus subtilis}
Probab=20.04 E-value=2.1e+02 Score=20.00 Aligned_cols=21 Identities=14% Similarity=0.294 Sum_probs=15.7
Q ss_pred EEecccceEEEEEEeEeCCCCC
Q psy5489 20 LLLGQHQEVLLNVSTHNAGESA 41 (94)
Q Consensus 20 l~vG~~~~l~l~v~v~N~gEdA 41 (94)
+.++ .+.|.++++++|.++.+
T Consensus 150 y~L~-~~~L~i~~~~~N~~~~~ 170 (326)
T 3mwx_A 150 YTIK-ENTLFKHATVMNKGKEA 170 (326)
T ss_dssp EEEE-TTEEEEEEEEEECSSSC
T ss_pred EEEc-CCcEEEEEEEEECCCCc
Confidence 3444 36899999999988764
Done!