RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5489
(94 letters)
>gnl|CDD|219842 pfam08441, Integrin_alpha2, Integrin alpha. This domain is found
in integrin alpha and integrin alpha precursors to the C
terminus of a number of pfam01839 repeats and to the
N-terminus of the pfam00357 cytoplasmic region. This
region is composed of three immunoglobulin-like domains.
Length = 440
Score = 67.0 bits (164), Expect = 1e-14
Identities = 36/91 (39%), Positives = 48/91 (52%), Gaps = 7/91 (7%)
Query: 11 STEMVGSYELLLGQHQEVLLNVSTHNAGESAYEAQLFIAHHPHLSYIGLEGQRGA----L 66
S + S L+LG +E+ L V+ N GE AYEAQL + + P LSY G+E +
Sbjct: 168 SAKFDLSETLVLGSDKELTLEVTVTNKGEDAYEAQLNVTYPPGLSYSGVENNESSEPLIS 227
Query: 67 C---NPYNTSLVVCALGNPFKKNASSHLKLR 94
C N +T VVC LGNP K+ + LR
Sbjct: 228 CESNNENSTRTVVCDLGNPMKRGSQVTFTLR 258
>gnl|CDD|143493 cd06819, PLPDE_III_LS_D-TA, Type III Pyridoxal 5-phosphate
(PLP)-Dependent Enzyme Low Specificity D-Threonine
Aldolase. Low specificity D-threonine aldolase (Low
specificity D-TA, EC 4.3.1.18), encoded by dtaAS gene
from Arthrobacter sp. strain DK-38, is the prototype of
this subfamily. Low specificity D-TAs are fold type III
PLP-dependent enzymes that catalyze the interconversion
between D-threonine/D-allo-threonine and glycine plus
acetaldehyde. Both PLP and divalent cations (eg. Mn2+)
are required for catalytic activity. Members of this
subfamily show similarity to bacterial alanine racemase
(AR), which contains an N-terminal PLP-binding
TIM-barrel domain and a C-terminal beta-sandwich domain.
AR exists as homodimers with active sites that lie at
the interface between the TIM barrel domain of one
subunit and the beta-sandwich domain of the other
subunit. Based on its similarity to AR, it is possible
that low specificity D-TAs also form dimers in solution.
Experimental data show that the monomeric form of low
specificity D-TAs exhibit full catalytic activity.
Length = 358
Score = 28.3 bits (64), Expect = 0.53
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 36 NAGESAYEAQLFIAHHPHLSYIGLEGQRGAL 66
GE+A IA P L + GL+ G L
Sbjct: 142 PPGEAALALARTIAALPGLRFAGLQAYHGHL 172
>gnl|CDD|216491 pfam01421, Reprolysin, Reprolysin (M12B) family zinc
metalloprotease. The members of this family are enzymes
that cleave peptides. These proteases require zinc for
catalysis. Members of this family are also known as
adamalysins. Most members of this family are snake venom
endopeptidases, but there are also some mammalian
proteins such as human ADAM8 and fertilin. Fertilin and
closely related proteins appear to not have some active
site residues and may not be active enzymes.
Length = 198
Score = 26.4 bits (59), Expect = 1.9
Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 7/52 (13%)
Query: 25 HQEVLLNVSTHNAGESAYEAQLFIAHHPHLSYIGLEGQRGALCNPYNTSLVV 76
+ LL +H+ AQL + IG G +C+P + VV
Sbjct: 77 RETDLLKRKSHDN------AQLLTGIDFDGNTIGAAYVGG-MCSPKRSVGVV 121
>gnl|CDD|218943 pfam06219, DUF1005, Protein of unknown function (DUF1005).
Family of plant proteins with undetermined function.
Length = 420
Score = 26.3 bits (58), Expect = 2.7
Identities = 22/75 (29%), Positives = 28/75 (37%), Gaps = 13/75 (17%)
Query: 1 MKPQSLSVRESTEMVGSYELLLGQHQEVLLNVSTHNAGESAYEAQL--------FIAHHP 52
M P VR S VG+ L+ E + ST A ++ L F A H
Sbjct: 1 MDPCPF-VRLS---VGNLPLISSSEAESP-DSSTLAASFHLSKSDLEALLAKGCFYAPHA 55
Query: 53 HLSYIGLEGQRGALC 67
L G+RGA C
Sbjct: 56 CLEVSVYTGRRGATC 70
>gnl|CDD|215282 PLN02511, PLN02511, hydrolase.
Length = 388
Score = 25.9 bits (57), Expect = 3.8
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 8/30 (26%)
Query: 54 LSYIGLEGQR----GA--LCNPYNTSLVVC 77
++Y+G EG+ GA LCNP++ LV+
Sbjct: 188 VNYLGEEGENCPLSGAVSLCNPFD--LVIA 215
>gnl|CDD|238434 cd00854, NagA, N-acetylglucosamine-6-phosphate deacetylase, NagA,
catalyzes the hydrolysis of the N-acetyl group of
N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to
glucosamine 6-phosphate and acetate. This is the first
committed step in the biosynthetic pathway to
amino-sugar-nucleotides, which is needed for cell wall
peptidoglycan and teichoic acid biosynthesis.
Deacetylation of N-acetylglucosamine is also important
in lipopolysaccharide synthesis and cell wall recycling.
Length = 374
Score = 25.2 bits (56), Expect = 6.7
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 56 YIGLEGQRGALCNPYNTSLVVC 77
+GL+ ++G+L + LVV
Sbjct: 340 LLGLDDRKGSLKPGKDADLVVL 361
>gnl|CDD|152008 pfam11572, DUF3234, Protein of unknown function (DUF3234). This
bacterial family of proteins has no known function.
Some members in this family of proteins are annotated
as TTHA0547 however this cannot be confirmed.
Length = 102
Score = 24.3 bits (52), Expect = 9.9
Identities = 8/11 (72%), Positives = 10/11 (90%)
Query: 44 AQLFIAHHPHL 54
A+ F+AHHPHL
Sbjct: 38 AEAFLAHHPHL 48
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.131 0.378
Gapped
Lambda K H
0.267 0.0531 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,361,049
Number of extensions: 336256
Number of successful extensions: 226
Number of sequences better than 10.0: 1
Number of HSP's gapped: 225
Number of HSP's successfully gapped: 11
Length of query: 94
Length of database: 10,937,602
Length adjustment: 61
Effective length of query: 33
Effective length of database: 8,232,008
Effective search space: 271656264
Effective search space used: 271656264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.6 bits)