RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy5489
         (94 letters)



>3fcs_A Integrin, alpha 2B; beta propeller, rossmann fold, EGF domain, cell
           adhesion, DI mutation, glycoprotein, HOST-virus
           interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
           sapiens}
          Length = 959

 Score = 66.9 bits (162), Expect = 9e-15
 Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 7/85 (8%)

Query: 17  SYELLLGQHQEVLLNVSTHNAGESAYEAQLFIAHHPHLSYIGLEGQRGA----LCNPY-- 70
              LL+G    + L +   N GE AYEA+L +       Y+            +CN    
Sbjct: 620 GSPLLVGADNVLELQMDAANEGEGAYEAELAVHLPQGAHYMRALSNVEGFERLICNQKKE 679

Query: 71  -NTSLVVCALGNPFKKNASSHLKLR 94
             T +V+C LGNP KKNA   + + 
Sbjct: 680 NETRVVLCELGNPMKKNAQIGIAML 704


>3ije_A Integrin alpha-V; integrin structure, activation, EGF domains,
           FLIM, cell SIGN cell adhesion, cleavage on PAIR of basic
           residues; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB:
           1jv2_A* 1l5g_A* 1m1x_A* 1u8c_A*
          Length = 967

 Score = 66.6 bits (161), Expect = 1e-14
 Identities = 26/86 (30%), Positives = 35/86 (40%), Gaps = 7/86 (8%)

Query: 16  GSYELLLGQHQEVLLNVSTHNAGESAYEAQLFIAHHPHLSYIGLEGQRGALCNPY----- 70
              ++ +G    + L V   N GE AYEA+L ++      +IG+     AL         
Sbjct: 613 DQKKIYIGDDNPLTLIVKAQNQGEGAYEAELIVSIPLQADFIGVVRNNEALARLSCAFKT 672

Query: 71  --NTSLVVCALGNPFKKNASSHLKLR 94
              T  VVC LGNP K        LR
Sbjct: 673 ENQTRQVVCDLGNPMKAGTQLLAGLR 698


>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion,
           pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
           sapiens} PDB: 3k71_A* 3k72_A*
          Length = 1095

 Score = 64.2 bits (155), Expect = 1e-13
 Identities = 20/98 (20%), Positives = 32/98 (32%), Gaps = 14/98 (14%)

Query: 11  STEMVGSYELLLGQHQEVLLNVSTHNAGESAYEAQLFIAHHPHLSYIGLEGQRGAL---- 66
           S    G   LL+G + E+   V   N GE +Y   +  +H   LSY  +   +       
Sbjct: 765 SFSFPGLKSLLVGSNLELNAEVMVWNDGEDSYGTTITFSHPAGLSYRYVAEGQKQGQLRS 824

Query: 67  ----CNPY-----NTSLVVCALGNP-FKKNASSHLKLR 94
               C+        T    C + +  F+  A       
Sbjct: 825 LHLTCDSAPVGSQGTWSTSCRINHLIFRGGAQITFLAT 862


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 28.5 bits (63), Expect = 0.29
 Identities = 15/66 (22%), Positives = 23/66 (34%), Gaps = 21/66 (31%)

Query: 23  GQHQEVLLNVSTHNAG-------------ESAYE-AQLFIAHHPHLSYIGLEGQRGALCN 68
           G+ +  L   + H+ G             ES +   +  I     L +IG+         
Sbjct: 261 GELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITV---LFFIGVRCYEAY--- 314

Query: 69  PYNTSL 74
           P NTSL
Sbjct: 315 P-NTSL 319


>2e3x_A Coagulation factor X-activating enzyme light CHAI; disintegrin,
           metalloproteinase, C-type lectin, hydrolase, BL
           clotting, toxin; HET: NAG MAN GM6; 2.91A {Daboia
           russellii siamensis}
          Length = 427

 Score = 27.7 bits (61), Expect = 0.48
 Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 1/33 (3%)

Query: 44  AQLFIAHHPHLSYIGLEGQRGALCNPYNTSLVV 76
           A LF      L+ +G+      +C  Y +  +V
Sbjct: 98  ALLFTDMRFDLNTLGI-TFLAGMCQAYRSVGIV 129


>3k7n_A K-like; SVMP, hydrolase; HET: NAG FUC FUL; 2.30A {Naja atra}
          Length = 397

 Score = 26.9 bits (59), Expect = 0.91
 Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 1/34 (2%)

Query: 44  AQLFIAHHPHLSYIGLEGQRGALCNPYNTSLVVC 77
           AQL      + + +G     G+LC    +  +V 
Sbjct: 98  AQLLTGIDFNGNTVGR-AYIGSLCKTNESVAIVQ 130


>3k7l_A Atragin; SVMP, metalloprotease, hydrolase; HET: NAG; 2.50A {Naja
           atra}
          Length = 422

 Score = 26.9 bits (59), Expect = 0.96
 Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 44  AQLFIAHHPHLSYIGLEGQRGALCNPYNTSLVV 76
           AQL      + + +GL    G++CNP  ++ VV
Sbjct: 103 AQLLTGIDFNGTPVGL-AYIGSICNPKTSAAVV 134


>2ero_A VAP-1, vascular apoptosis-inducing protein 1; metalloprotease,
           disintegrin, calcium-binding, ADAM, SVMP, M protein,
           toxin; HET: NAG; 2.50A {Crotalus atrox} PDB: 2erp_A*
           2erq_A*
          Length = 427

 Score = 26.5 bits (58), Expect = 1.3
 Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)

Query: 44  AQLFIAHHPHLSYIGLEGQRGALCNPYNTSLVVC 77
           AQL    + +    GL G  G +CN   ++ +V 
Sbjct: 105 AQLLTGINFNGPTAGL-GYLGGICNTMYSAGIVQ 137


>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon
           merolae}
          Length = 632

 Score = 24.7 bits (54), Expect = 6.6
 Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 9/48 (18%)

Query: 12  TEMVGSYELLLGQHQEVLLNVSTHNA-----GESAYEAQLFIAHHPHL 54
            E+ G    L+     VL++V            S YE  + + H P++
Sbjct: 399 FEVTGQIRHLVP----VLISVLLAVIVGNAFNRSLYETLVLMKHLPYM 442


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.316    0.131    0.378 

Gapped
Lambda     K      H
   0.267   0.0839    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,290,881
Number of extensions: 62127
Number of successful extensions: 162
Number of sequences better than 10.0: 1
Number of HSP's gapped: 159
Number of HSP's successfully gapped: 23
Length of query: 94
Length of database: 6,701,793
Length adjustment: 61
Effective length of query: 33
Effective length of database: 4,998,612
Effective search space: 164954196
Effective search space used: 164954196
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.2 bits)