RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5489
         (94 letters)



>d1jv2a2 b.1.15.1 (A:599-737) Thigh, calf-1 and calf-2 domains of
           integrin alpha {Human (Homo sapiens) [TaxId: 9606]}
          Length = 139

 Score = 64.6 bits (157), Expect = 2e-15
 Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 7/83 (8%)

Query: 19  ELLLGQHQEVLLNVSTHNAGESAYEAQLFIAHHPHLSYIGLEGQRGAL----CNPY---N 71
           ++ +G    + L V   N GE AYEA+L ++      +IG+     AL    C       
Sbjct: 18  KIYIGDDNPLTLIVKAQNQGEGAYEAELIVSIPLQADFIGVVRNNEALARLSCAFKTENQ 77

Query: 72  TSLVVCALGNPFKKNASSHLKLR 94
           T  VVC LGNP K        LR
Sbjct: 78  TRQVVCDLGNPMKAGTQLLAGLR 100


>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal
          domain {Paracoccus denitrificans [TaxId: 266]}
          Length = 459

 Score = 24.0 bits (52), Expect = 3.5
 Identities = 4/8 (50%), Positives = 6/8 (75%)

Query: 49 AHHPHLSY 56
           HH H+S+
Sbjct: 85 LHHVHMSF 92


>d1eucb1 c.23.4.1 (B:246-393) Succinyl-CoA synthetase, beta-chain,
          C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
          Length = 148

 Score = 23.6 bits (51), Expect = 3.9
 Identities = 8/20 (40%), Positives = 9/20 (45%)

Query: 49 AHHPHLSYIGLEGQRGALCN 68
          A    L YIGL+G      N
Sbjct: 7  AAKYDLKYIGLDGNIACFVN 26


>d2nu7b1 c.23.4.1 (B:239-388) Succinyl-CoA synthetase, beta-chain,
          C-terminal domain {Escherichia coli [TaxId: 562]}
          Length = 150

 Score = 23.6 bits (51), Expect = 4.0
 Identities = 7/20 (35%), Positives = 11/20 (55%)

Query: 49 AHHPHLSYIGLEGQRGALCN 68
          A    L+Y+ L+G  G + N
Sbjct: 7  AAQWELNYVALDGNIGCMVN 26


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.131    0.378 

Gapped
Lambda     K      H
   0.267   0.0636    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 297,813
Number of extensions: 10488
Number of successful extensions: 25
Number of sequences better than 10.0: 1
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 6
Length of query: 94
Length of database: 2,407,596
Length adjustment: 57
Effective length of query: 37
Effective length of database: 1,624,986
Effective search space: 60124482
Effective search space used: 60124482
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.1 bits)