BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy549
(253 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 107 bits (266), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 61/149 (40%), Positives = 95/149 (63%), Gaps = 5/149 (3%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KSS++ +F+ F Y TVE+ +R D + TL I DT+G++QFPAM+ LSIS
Sbjct: 16 KSSLVLRFVKGTFRESYIPTVEDTYRQVISC-DKSICTLQITDTTGSHQFPAMQRLSISK 74
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLM--VPIVVVGNKC-ELEFKDVRREIAET 178
AF+LVY++ + + +K + EQI +G + +PI++VGNKC E ++V+ AE
Sbjct: 75 GHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEA 134
Query: 179 IALYDWQCGFVECSAKENYNIVQVFKELL 207
+A W+C F+E SAK N+N+ ++F+ELL
Sbjct: 135 LA-RTWKCAFMETSAKLNHNVKELFQELL 162
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 105 bits (261), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 56/149 (37%), Positives = 94/149 (63%), Gaps = 4/149 (2%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KSS++ +F+ F Y T+E+ +R D + TL I DT+G++QFPAM+ LSIS
Sbjct: 21 KSSLVLRFVKGTFRDTYIPTIEDTYRQVISC-DKSVCTLQITDTTGSHQFPAMQRLSISK 79
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLM--VPIVVVGNKCELEFKDVRREIAETI 179
AF+LV++V + + + + + IV +G + +P+++VGNKC+ ++V A+ +
Sbjct: 80 GHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAV 139
Query: 180 ALYDWQCGFVECSAKENYNIVQVFKELLA 208
A +W+C F+E SAK NYN+ ++F+ELL
Sbjct: 140 A-QEWKCAFMETSAKMNYNVKELFQELLT 167
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 103 bits (257), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 59/150 (39%), Positives = 94/150 (62%), Gaps = 3/150 (2%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS++ QF+ F+ +Y T+E+ +R + E+ D Q L+ILDT+G QF AMR+L +
Sbjct: 16 KSALTVQFVQGIFVEKYDPTIEDSYRKQVEV-DAQQCMLEILDTAGTEQFTAMRDLYMKN 74
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVN-KRGLMVPIVVVGNKCELE-FKDVRREIAETI 179
F LVY++ ST++ ++DLREQI+ K VP+++VGNKC+LE + V +E + +
Sbjct: 75 GQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNL 134
Query: 180 ALYDWQCGFVECSAKENYNIVQVFKELLAQ 209
A C F+E SAK N+ ++F +L+ Q
Sbjct: 135 ARQWNNCAFLESSAKSKINVNEIFYDLVRQ 164
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/150 (39%), Positives = 94/150 (62%), Gaps = 3/150 (2%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS++ QF+ F+ +Y T+E+ +R + E+ D Q L+ILDT+G QF AMR+L +
Sbjct: 18 KSALTVQFVQGIFVEKYDPTIEDSYRKQVEV-DAQQCMLEILDTAGTEQFTAMRDLYMKN 76
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVN-KRGLMVPIVVVGNKCELE-FKDVRREIAETI 179
F LVY++ ST++ ++DLREQI+ K VP+++VGNKC+LE + V +E + +
Sbjct: 77 GQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNL 136
Query: 180 ALYDWQCGFVECSAKENYNIVQVFKELLAQ 209
A C F+E SAK N+ ++F +L+ Q
Sbjct: 137 ARQWNNCAFLESSAKSKINVNEIFYDLVRQ 166
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 103 bits (256), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/150 (38%), Positives = 94/150 (62%), Gaps = 3/150 (2%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS++ QF+ F+ +Y T+E+ +R + E+ D Q L+ILDT+G QF AMR+L +
Sbjct: 16 KSALTVQFVQGIFVEKYDPTIEDSYRKQVEV-DCQQCMLEILDTAGTEQFTAMRDLYMKN 74
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLM-VPIVVVGNKCELE-FKDVRREIAETI 179
F LVY++ ST++ ++DLREQI+ + VP+++VGNKC+LE + V +E + +
Sbjct: 75 GQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNL 134
Query: 180 ALYDWQCGFVECSAKENYNIVQVFKELLAQ 209
A C F+E SAK N+ ++F +L+ Q
Sbjct: 135 ARQWCNCAFLESSAKSKINVNEIFYDLVRQ 164
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 102 bits (253), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/150 (38%), Positives = 93/150 (62%), Gaps = 3/150 (2%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS++ QF+ F+ Y T+E+ +R + E+ D Q L+ILDT+G QF AMR+L +
Sbjct: 16 KSALTVQFVQGIFVDEYDPTIEDSYRKQVEV-DCQQCMLEILDTAGTEQFTAMRDLYMKN 74
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLM-VPIVVVGNKCELE-FKDVRREIAETI 179
F LVY++ ST++ ++DLREQI+ + VP+++VGNKC+LE + V +E + +
Sbjct: 75 GQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNL 134
Query: 180 ALYDWQCGFVECSAKENYNIVQVFKELLAQ 209
A C F+E SAK N+ ++F +L+ Q
Sbjct: 135 ARQWCNCAFLESSAKSKINVNEIFYDLVRQ 164
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 96.7 bits (239), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 88/149 (59%), Gaps = 2/149 (1%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS++ QF+ FI +Y T+E+ +R E E+ D + L+ILDT+G QF +MR+L I
Sbjct: 16 KSALTVQFVTGTFIEKYDPTIEDFYRKEIEV-DSSPSVLEILDTAGTEQFASMRDLYIKN 74
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVN-KRGLMVPIVVVGNKCELEFKDVRREIAETIA 180
F+LVY++ + ++ +K +R+QI+ KR VP+++VGNK +LE +
Sbjct: 75 GQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRAL 134
Query: 181 LYDWQCGFVECSAKENYNIVQVFKELLAQ 209
+W C F+E SAK + ++F E++ Q
Sbjct: 135 AEEWGCPFMETSAKSKTMVDELFAEIVRQ 163
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 84.3 bits (207), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 89/154 (57%), Gaps = 4/154 (2%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS++ QF+YD F+ Y+ T + +R + L DG ++ +DILDT+G + A+R+ +
Sbjct: 27 KSALTLQFMYDEFVEDYEPTKADSYRKKVVL-DGEEVQIDILDTAGQEDYAAIRDNYFRS 85
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVN-KRGLMVPIVVVGNKCELEFK-DVRREIAETI 179
+ F+ V+++ + ++ D REQI+ K VP ++VGNK +LE K V E A+
Sbjct: 86 GEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNR 145
Query: 180 ALYDWQCGFVECSAKENYNIVQVFKELLAQAKVQ 213
A W +VE SAK N+ +VF +L+ + + +
Sbjct: 146 A-EQWNVNYVETSAKTRANVDKVFFDLMREIRAR 178
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 84.0 bits (206), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 89/154 (57%), Gaps = 4/154 (2%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS++ QF+YD F+ Y+ T + +R + L DG ++ +DILDT+G + A+R+ +
Sbjct: 31 KSALTLQFMYDEFVEDYEPTKADSYRKKVVL-DGEEVQIDILDTAGQEDYAAIRDNYFRS 89
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVN-KRGLMVPIVVVGNKCELEFK-DVRREIAETI 179
+ F+ V+++ + ++ D REQI+ K VP ++VGNK +LE K V E A+
Sbjct: 90 GEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNR 149
Query: 180 ALYDWQCGFVECSAKENYNIVQVFKELLAQAKVQ 213
A W +VE SAK N+ +VF +L+ + + +
Sbjct: 150 A-EQWNVNYVETSAKTRANVDKVFFDLMREIRAR 182
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 84.0 bits (206), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 89/154 (57%), Gaps = 4/154 (2%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS++ QF+YD F+ Y+ T + +R + L DG ++ +DILDT+G + A+R+ +
Sbjct: 19 KSALTLQFMYDEFVEDYEPTKADSYRKKVVL-DGEEVQIDILDTAGQEDYAAIRDNYFRS 77
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVN-KRGLMVPIVVVGNKCELEFK-DVRREIAETI 179
+ F+ V+++ + ++ D REQI+ K VP ++VGNK +LE K V E A+
Sbjct: 78 GEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNR 137
Query: 180 ALYDWQCGFVECSAKENYNIVQVFKELLAQAKVQ 213
A W +VE SAK N+ +VF +L+ + + +
Sbjct: 138 A-EQWNVNYVETSAKTRANVDKVFFDLMREIRAR 170
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 83.6 bits (205), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 89/154 (57%), Gaps = 4/154 (2%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS++ QF+YD F+ Y+ T + +R + L DG ++ +DILDT+G + A+R+ +
Sbjct: 19 KSALTLQFMYDEFVEDYEPTKADSYRKKVVL-DGEEVQIDILDTAGLEDYAAIRDNYFRS 77
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVN-KRGLMVPIVVVGNKCELEFK-DVRREIAETI 179
+ F+ V+++ + ++ D REQI+ K VP ++VGNK +LE K V E A+
Sbjct: 78 GEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNR 137
Query: 180 ALYDWQCGFVECSAKENYNIVQVFKELLAQAKVQ 213
A W +VE SAK N+ +VF +L+ + + +
Sbjct: 138 A-EQWNVNYVETSAKTRANVDKVFFDLMREIRAR 170
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 92/155 (59%), Gaps = 5/155 (3%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS++ QF+YD F+ Y+ T + +R + L DG ++ +DILDT+G + A+R+ +
Sbjct: 20 KSALTLQFMYDEFVEDYEPTKADSYRKKVVL-DGEEVQIDILDTAGLEDYAAIRDNYFRS 78
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGL--MVPIVVVGNKCEL-EFKDVRREIAET 178
+ F+LV+++ + ++ + REQI+ + +P++VVGNK +L E + V E A +
Sbjct: 79 GEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEERRQVPVEEARS 138
Query: 179 IALYDWQCGFVECSAKENYNIVQVFKELLAQAKVQ 213
A +W +VE SAK N+ +VF +L+ + + +
Sbjct: 139 KA-EEWGVQYVETSAKTRANVDKVFFDLMREIRTK 172
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 89/154 (57%), Gaps = 4/154 (2%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS++ QF+YD F+ Y+ T + +R + L DG ++ +DILDT+G + A+R+ +
Sbjct: 17 KSALTLQFMYDEFVEDYEPTKADSYRKKVVL-DGEEVQIDILDTAGQEDYAAIRDNYFRS 75
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVN-KRGLMVPIVVVGNKCELEFK-DVRREIAETI 179
+ F+ V+++ + ++ D REQI+ K VP ++VGNK +LE K V E A+
Sbjct: 76 GEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNR 135
Query: 180 ALYDWQCGFVECSAKENYNIVQVFKELLAQAKVQ 213
A W +VE SAK N+ +VF +L+ + + +
Sbjct: 136 A-DQWNVNYVETSAKTRANVDKVFFDLMREIRAR 168
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 92/155 (59%), Gaps = 5/155 (3%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS++ QF+YD F+ Y+ T + +R + L DG ++ +DILDT+G + A+R+ +
Sbjct: 16 KSALTLQFMYDEFVEDYEPTKADSYRKKVVL-DGEEVQIDILDTAGLEDYAAIRDNYFRS 74
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGL--MVPIVVVGNKCEL-EFKDVRREIAET 178
+ F+LV+++ + ++ + REQI+ + +P++VVGNK +L E + V E A +
Sbjct: 75 GEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEERRQVPVEEARS 134
Query: 179 IALYDWQCGFVECSAKENYNIVQVFKELLAQAKVQ 213
A +W +VE SAK N+ +VF +L+ + + +
Sbjct: 135 KA-EEWGVQYVETSAKTRANVDKVFFDLMREIRTK 168
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 86/151 (56%), Gaps = 3/151 (1%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS++ Q + + F+ Y T+E+ +R + + DG LDILDT+G ++ AMR+ + T
Sbjct: 34 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCLLDILDTAGHEEYSAMRDQYMRT 92
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVN-KRGLMVPIVVVGNKCELEFKDVRREIAETIA 180
+ F+ V+A+++ +++ + REQI K VP+V+VGNKC+L + V + A+ +A
Sbjct: 93 GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLA 152
Query: 181 LYDWQCGFVECSAKENYNIVQVFKELLAQAK 211
+ F+E SAK + F L+ + +
Sbjct: 153 R-SYGIPFIETSAKTRQGVDDAFYTLVREIR 182
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 85/151 (56%), Gaps = 3/151 (1%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS++ Q + + F+ Y T+EE +R + + DG LDILDT+G ++ AMR+ + T
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEESYRKQV-VIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVN-KRGLMVPIVVVGNKCELEFKDVRREIAETIA 180
+ F+ V+A+++ +++ + REQI K VP+V+VGNKC+L + V A+ +A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA 134
Query: 181 LYDWQCGFVECSAKENYNIVQVFKELLAQAK 211
+ ++E SAK + F L+ + +
Sbjct: 135 R-SYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 81.3 bits (199), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 86/151 (56%), Gaps = 3/151 (1%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS++ Q + + F+ +Y T+E+ +R + + DG LDILDT+G ++ AMR+ + T
Sbjct: 16 KSALTIQLIQNHFVDKYDPTIEDSYRKQVVI-DGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVN-KRGLMVPIVVVGNKCELEFKDVRREIAETIA 180
+ F+ V+A+++ +++ + REQI K VP+V+VGNKC+L + V A+ +A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA 134
Query: 181 LYDWQCGFVECSAKENYNIVQVFKELLAQAK 211
+ ++E SAK + F L+ + +
Sbjct: 135 R-SYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 81.3 bits (199), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 86/151 (56%), Gaps = 3/151 (1%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS++ Q + + F+ +Y T+E+ +R + + DG LDILDT+G ++ AMR+ + T
Sbjct: 16 KSALTIQLIQNHFVEKYDPTIEDSYRKQVVI-DGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVN-KRGLMVPIVVVGNKCELEFKDVRREIAETIA 180
+ F+ V+A+++ +++ + REQI K VP+V+VGNKC+L + V A+ +A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA 134
Query: 181 LYDWQCGFVECSAKENYNIVQVFKELLAQAK 211
+ ++E SAK + F L+ + +
Sbjct: 135 R-SYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 80.9 bits (198), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 85/151 (56%), Gaps = 3/151 (1%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS++ Q + + F+ Y T+E+ +R + + DG LDILDT+G ++ AMR+ + T
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVN-KRGLMVPIVVVGNKCELEFKDVRREIAETIA 180
+ F+ V+A+++ +++ + REQI K VP+V+VGNKC+L + V A+ +A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA 134
Query: 181 LYDWQCGFVECSAKENYNIVQVFKELLAQAK 211
+ ++E SAK + F L+ + +
Sbjct: 135 -RSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 80.9 bits (198), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 86/151 (56%), Gaps = 3/151 (1%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS++ Q + + F+ Y T+E+ +R + + DG LDILDT+G ++ AMR+ + T
Sbjct: 17 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCLLDILDTAGQEEYSAMRDQYMRT 75
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVN-KRGLMVPIVVVGNKCELEFKDVRREIAETIA 180
+ F+ V+A+++ +++ + REQI K VP+V+VGNKC+L + V + A+ +A
Sbjct: 76 GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLA 135
Query: 181 LYDWQCGFVECSAKENYNIVQVFKELLAQAK 211
+ F+E SAK + F L+ + +
Sbjct: 136 -RSYGIPFIETSAKTRQGVDDAFYTLVREIR 165
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 80.9 bits (198), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 85/151 (56%), Gaps = 3/151 (1%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS++ Q + + F+ Y T+E+ +R + + DG LDILDT+G ++ AMR+ + T
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETXLLDILDTAGGEEYSAMRDQYMRT 74
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVN-KRGLMVPIVVVGNKCELEFKDVRREIAETIA 180
+ F+ V+A+++ +++ + REQI K VP+V+VGNKC+L + V A+ +A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA 134
Query: 181 LYDWQCGFVECSAKENYNIVQVFKELLAQAK 211
+ ++E SAK + F L+ + +
Sbjct: 135 R-SYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 80.9 bits (198), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 85/151 (56%), Gaps = 3/151 (1%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS++ Q + + F+ Y T+E+ +R + + DG LDILDT+G ++ AMR+ + T
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQV-VIDGETCLLDILDTAGGEEYSAMRDQYMRT 74
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVN-KRGLMVPIVVVGNKCELEFKDVRREIAETIA 180
+ F+ V+A+++ +++ + REQI K VP+V+VGNKC+L + V A+ +A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA 134
Query: 181 LYDWQCGFVECSAKENYNIVQVFKELLAQAK 211
+ ++E SAK + F L+ + +
Sbjct: 135 R-SYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 80.5 bits (197), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 85/151 (56%), Gaps = 3/151 (1%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS++ Q + + F+ Y T+E+ +R + + DG LDILDT+G ++ AMR+ + T
Sbjct: 23 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCLLDILDTAGQEEYSAMRDQYMRT 81
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVN-KRGLMVPIVVVGNKCELEFKDVRREIAETIA 180
+ F+ V+A+++ +++ + REQI K VP+V+VGNKC+L + V A+ +A
Sbjct: 82 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA 141
Query: 181 LYDWQCGFVECSAKENYNIVQVFKELLAQAK 211
+ ++E SAK + F L+ + +
Sbjct: 142 R-SYGIPYIETSAKTRQGVEDAFYTLVREIR 171
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 80.5 bits (197), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 85/151 (56%), Gaps = 3/151 (1%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS++ Q + + F+ Y T+E+ +R + + DG LDILDT+G ++ AMR+ + T
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCLLDILDTAGQEEYSAMRDQYMRT 79
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVN-KRGLMVPIVVVGNKCELEFKDVRREIAETIA 180
+ F+ V+A+++ +++ + REQI K VP+V+VGNKC+L + V A+ +A
Sbjct: 80 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA 139
Query: 181 LYDWQCGFVECSAKENYNIVQVFKELLAQAK 211
+ ++E SAK + F L+ + +
Sbjct: 140 R-SYGIPYIETSAKTRQGVEDAFYTLVREIR 169
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 80.5 bits (197), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 85/151 (56%), Gaps = 3/151 (1%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS++ Q + + F+ Y T+E+ +R + + DG LDILDT+G ++ AMR+ + T
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCLLDILDTAGQEEYSAMRDQYMRT 79
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVN-KRGLMVPIVVVGNKCELEFKDVRREIAETIA 180
+ F+ V+A+++ +++ + REQI K VP+V+VGNKC+L + V A+ +A
Sbjct: 80 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA 139
Query: 181 LYDWQCGFVECSAKENYNIVQVFKELLAQAK 211
+ ++E SAK + F L+ + +
Sbjct: 140 R-SYGIPYIETSAKTRQGVEDAFYTLVREIR 169
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 80.5 bits (197), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 85/151 (56%), Gaps = 3/151 (1%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS++ Q + + F+ Y T+E+ +R + + DG LDILDT+G ++ AMR+ + T
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCLLDILDTAGVEEYSAMRDQYMRT 74
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVN-KRGLMVPIVVVGNKCELEFKDVRREIAETIA 180
+ F+ V+A+++ +++ + REQI K VP+V+VGNKC+L + V A+ +A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA 134
Query: 181 LYDWQCGFVECSAKENYNIVQVFKELLAQAK 211
+ ++E SAK + F L+ + +
Sbjct: 135 R-SYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 85/151 (56%), Gaps = 3/151 (1%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS++ Q + + F+ Y T+E+ +R + + DG LDILDT+G ++ AMR+ + T
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCLLDILDTTGQEEYSAMRDQYMRT 74
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVN-KRGLMVPIVVVGNKCELEFKDVRREIAETIA 180
+ F+ V+A+++ +++ + REQI K VP+V+VGNKC+L + V A+ +A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA 134
Query: 181 LYDWQCGFVECSAKENYNIVQVFKELLAQAK 211
+ ++E SAK + F L+ + +
Sbjct: 135 R-SYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 85/151 (56%), Gaps = 3/151 (1%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS++ Q + + F+ Y T+E+ +R + + DG LDILDT+G ++ AMR+ + T
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCLLDILDTAGLEEYSAMRDQYMRT 79
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVN-KRGLMVPIVVVGNKCELEFKDVRREIAETIA 180
+ F+ V+A+++ +++ + REQI K VP+V+VGNKC+L + V A+ +A
Sbjct: 80 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA 139
Query: 181 LYDWQCGFVECSAKENYNIVQVFKELLAQAK 211
+ ++E SAK + F L+ + +
Sbjct: 140 R-SYGIPYIETSAKTRQGVEDAFYTLVREIR 169
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 85/151 (56%), Gaps = 3/151 (1%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS++ Q + + F+ Y T+E+ +R + + DG LDILDT+G ++ AMR+ + T
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCLLDILDTAGHEEYSAMRDQYMRT 74
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVN-KRGLMVPIVVVGNKCELEFKDVRREIAETIA 180
+ F+ V+A+++ +++ + REQI K VP+V+VGNKC+L + V A+ +A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA 134
Query: 181 LYDWQCGFVECSAKENYNIVQVFKELLAQAK 211
+ ++E SAK + F L+ + +
Sbjct: 135 R-SYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 85/151 (56%), Gaps = 3/151 (1%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS++ Q + + F+ Y T+E+ +R + + DG LDILDT+G ++ AMR+ + T
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCLLDILDTAGKEEYSAMRDQYMRT 74
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVN-KRGLMVPIVVVGNKCELEFKDVRREIAETIA 180
+ F+ V+A+++ +++ + REQI K VP+V+VGNKC+L + V A+ +A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA 134
Query: 181 LYDWQCGFVECSAKENYNIVQVFKELLAQAK 211
+ ++E SAK + F L+ + +
Sbjct: 135 R-SYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 85/151 (56%), Gaps = 3/151 (1%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS++ Q + + F+ Y T+E+ +R + + DG LDILDT+G ++ AMR+ + T
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQV-VIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVN-KRGLMVPIVVVGNKCELEFKDVRREIAETIA 180
+ F+ V+A+++ +++ + REQI K VP+V+VGNKC+L + V A+ +A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA 134
Query: 181 LYDWQCGFVECSAKENYNIVQVFKELLAQAK 211
+ ++E SAK + F L+ + +
Sbjct: 135 R-SYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 85/151 (56%), Gaps = 3/151 (1%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS++ Q + + F+ Y T+E+ +R + + DG LDILDT+G ++ AMR+ + T
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQV-VIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVN-KRGLMVPIVVVGNKCELEFKDVRREIAETIA 180
+ F+ V+A+++ +++ + REQI K VP+V+VGNKC+L + V A+ +A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA 134
Query: 181 LYDWQCGFVECSAKENYNIVQVFKELLAQAK 211
+ ++E SAK + F L+ + +
Sbjct: 135 R-SYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 85/151 (56%), Gaps = 3/151 (1%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS++ Q + + F+ Y T+E+ +R + + DG LDILDT+G ++ AMR+ + T
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVN-KRGLMVPIVVVGNKCELEFKDVRREIAETIA 180
+ F+ V+A+++ +++ + REQI K VP+V+VGNKC+L + V A+ +A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA 134
Query: 181 LYDWQCGFVECSAKENYNIVQVFKELLAQAK 211
+ ++E SAK + F L+ + +
Sbjct: 135 R-SYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 85/151 (56%), Gaps = 3/151 (1%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS++ Q + + F+ Y T+E+ +R + + DG LDILDT+G ++ AMR+ + T
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVN-KRGLMVPIVVVGNKCELEFKDVRREIAETIA 180
+ F+ V+A+++ +++ + REQI K VP+V+VGNKC+L + V A+ +A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA 134
Query: 181 LYDWQCGFVECSAKENYNIVQVFKELLAQAK 211
+ ++E SAK + F L+ + +
Sbjct: 135 R-SYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 85/151 (56%), Gaps = 3/151 (1%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS++ Q + + F+ Y T+E+ +R + + DG LDILDT+G ++ AMR+ + T
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVN-KRGLMVPIVVVGNKCELEFKDVRREIAETIA 180
+ F+ V+A+++ +++ + REQI K VP+V+VGNKC+L + V A+ +A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA 134
Query: 181 LYDWQCGFVECSAKENYNIVQVFKELLAQAK 211
+ ++E SAK + F L+ + +
Sbjct: 135 R-SYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 85/151 (56%), Gaps = 3/151 (1%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS++ Q + + F+ Y T+E+ +R + + DG LDILDT+G ++ AMR+ + T
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVN-KRGLMVPIVVVGNKCELEFKDVRREIAETIA 180
+ F+ V+A+++ +++ + REQI K VP+V+VGNKC+L + V A+ +A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAGRTVESRQAQDLA 134
Query: 181 LYDWQCGFVECSAKENYNIVQVFKELLAQAK 211
+ ++E SAK + F L+ + +
Sbjct: 135 R-SYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 83/147 (56%), Gaps = 3/147 (2%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS++ Q + + F+ Y T+E+ +R + + DG LDILDT+G ++ AMR+ + T
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVN-KRGLMVPIVVVGNKCELEFKDVRREIAETIA 180
+ F+ V+A+++ +++ + REQI K VP+V+VGNKC+L + V A+ +A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA 134
Query: 181 LYDWQCGFVECSAKENYNIVQVFKELL 207
+ ++E SAK + F L+
Sbjct: 135 R-SYGIPYIETSAKTRQGVEDAFYTLV 160
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 85/151 (56%), Gaps = 3/151 (1%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS++ Q + + F+ Y T+E+ +R + + DG LDILDT+G ++ AMR+ + T
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCLLDILDTAGIEEYSAMRDQYMRT 74
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVN-KRGLMVPIVVVGNKCELEFKDVRREIAETIA 180
+ F+ V+A+++ +++ + REQI K VP+V+VGNKC+L + V A+ +A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA 134
Query: 181 LYDWQCGFVECSAKENYNIVQVFKELLAQAK 211
+ ++E SAK + F L+ + +
Sbjct: 135 R-SYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 85/151 (56%), Gaps = 3/151 (1%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS++ Q + + F+ Y T+E+ +R + + DG LDILDT+G ++ AMR+ + T
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCLLDILDTAGLEEYSAMRDQYMRT 74
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVN-KRGLMVPIVVVGNKCELEFKDVRREIAETIA 180
+ F+ V+A+++ +++ + REQI K VP+V+VGNKC+L + V A+ +A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA 134
Query: 181 LYDWQCGFVECSAKENYNIVQVFKELLAQAK 211
+ ++E SAK + F L+ + +
Sbjct: 135 R-SYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 85/151 (56%), Gaps = 3/151 (1%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS++ Q + + F+ Y T+E+ +R + + DG LDILDT+G ++ AMR+ + T
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQV-VIDGETCLLDILDTAGQEEYSAMRDEYMRT 74
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVN-KRGLMVPIVVVGNKCELEFKDVRREIAETIA 180
+ F+ V+A+++ +++ + REQI K VP+V+VGNKC+L + V A+ +A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA 134
Query: 181 LYDWQCGFVECSAKENYNIVQVFKELLAQAK 211
+ ++E SAK + F L+ + +
Sbjct: 135 R-SYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 85/151 (56%), Gaps = 3/151 (1%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS++ Q + + F+ Y T+E+ +R + + DG LDILDT+G ++ AMR+ + T
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVN-KRGLMVPIVVVGNKCELEFKDVRREIAETIA 180
+ F+ V+A+++ +++ + REQI K VP+V+VGNKC+L + V A+ +A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA 134
Query: 181 LYDWQCGFVECSAKENYNIVQVFKELLAQAK 211
+ ++E SAK + F L+ + +
Sbjct: 135 R-SYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 88/156 (56%), Gaps = 4/156 (2%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS++ Q + + F+ Y T+E+ +R + + DG LDILDT+G ++ AMR+ + T
Sbjct: 34 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCLLDILDTAGQEEYSAMRDQYMRT 92
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVN-KRGLMVPIVVVGNKCELEFKDVRREIAETIA 180
+ F+ V+A++++ ++ + REQI K VP+V+VGNKC+L + V + A +A
Sbjct: 93 GEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELA 152
Query: 181 LYDWQCGFVECSAKENYNIVQVFKELLAQAKVQYNL 216
+ F+E SAK + F L+ + + QY +
Sbjct: 153 -KSYGIPFIETSAKTRQGVEDAFYTLVREIR-QYRM 186
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 84/151 (55%), Gaps = 3/151 (1%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS++ Q + + F+ Y T+E+ +R + + DG LDILDT G ++ AMR+ + T
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCLLDILDTGGQEEYSAMRDQYMRT 74
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVN-KRGLMVPIVVVGNKCELEFKDVRREIAETIA 180
+ F+ V+A+++ +++ + REQI K VP+V+VGNKC+L + V A+ +A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA 134
Query: 181 LYDWQCGFVECSAKENYNIVQVFKELLAQAK 211
+ ++E SAK + F L+ + +
Sbjct: 135 R-SYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 85/151 (56%), Gaps = 3/151 (1%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS++ Q + + F+ Y T+E+ +R + + DG LDILDT+G ++ AMR+ + T
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVN-KRGLMVPIVVVGNKCELEFKDVRREIAETIA 180
+ F+ V+A+++ +++ + REQI K VP+V+VGNKC+L + V A+ +A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA 134
Query: 181 LYDWQCGFVECSAKENYNIVQVFKELLAQAK 211
+ ++E SAK + F L+ + +
Sbjct: 135 R-SYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 85/151 (56%), Gaps = 3/151 (1%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS++ Q + + F+ Y ++E+ +R + + DG LDILDT+G ++ AMR+ + T
Sbjct: 22 KSALTIQLIQNHFVDEYDPSIEDSYRKQVVI-DGETCLLDILDTAGQEEYSAMRDQYMRT 80
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVN-KRGLMVPIVVVGNKCELEFKDVRREIAETIA 180
+ F+ V+A+++ +++ + REQI K VP+V+VGNKC+L + V A+ +A
Sbjct: 81 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA 140
Query: 181 LYDWQCGFVECSAKENYNIVQVFKELLAQAK 211
+ ++E SAK + F L+ + +
Sbjct: 141 R-SYGIPYIETSAKTRQGVEDAFYTLVREIR 170
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 85/151 (56%), Gaps = 3/151 (1%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS++ Q + + F+ Y T+E+ +R + + DG LDILDT+G ++ AMR+ + T
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQV-VIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVN-KRGLMVPIVVVGNKCELEFKDVRREIAETIA 180
+ F+ V+A+++ +++ + REQI K VP+V+VGN+C+L + V A+ +A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNRCDLAARTVESRQAQDLA 134
Query: 181 LYDWQCGFVECSAKENYNIVQVFKELLAQAK 211
+ ++E SAK + F L+ + +
Sbjct: 135 R-SYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 85/151 (56%), Gaps = 3/151 (1%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS++ Q + + F+ Y T+E+ +R + + DG LDILDT+G ++ AMR+ + T
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQV-VIDGEICLLDILDTAGQEEYSAMRDQYMRT 74
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVN-KRGLMVPIVVVGNKCELEFKDVRREIAETIA 180
+ F+ V+A+++ +++ + REQI K VP+V+VGNKC+L + V A+ +A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA 134
Query: 181 LYDWQCGFVECSAKENYNIVQVFKELLAQAK 211
+ ++E SAK + F L+ + +
Sbjct: 135 R-SYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 85/151 (56%), Gaps = 3/151 (1%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+++ Q + + F+ Y T+E+ +R + + DG LDILDT+G ++ AMR+ + T
Sbjct: 16 KNALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVN-KRGLMVPIVVVGNKCELEFKDVRREIAETIA 180
+ F+ V+A+++ +++ + REQI K VP+V+VGNKC+L + V A+ +A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA 134
Query: 181 LYDWQCGFVECSAKENYNIVQVFKELLAQAK 211
+ ++E SAK + F L+ + +
Sbjct: 135 R-SYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 85/151 (56%), Gaps = 3/151 (1%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS++ Q + + F+ Y ++E+ +R + + DG LDILDT+G ++ AMR+ + T
Sbjct: 16 KSALTIQLIQNHFVDEYDPSIEDSYRKQV-VIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVN-KRGLMVPIVVVGNKCELEFKDVRREIAETIA 180
+ F+ V+A+++ +++ + REQI K VP+V+VGNKC+L + V A+ +A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA 134
Query: 181 LYDWQCGFVECSAKENYNIVQVFKELLAQAK 211
+ ++E SAK + F L+ + +
Sbjct: 135 R-SYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 85/151 (56%), Gaps = 3/151 (1%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS++ Q + + F+ + T+E+ +R + + DG LDILDT+G ++ AMR+ + T
Sbjct: 16 KSALTIQLIQNHFVDEFDPTIEDSYRKQV-VIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVN-KRGLMVPIVVVGNKCELEFKDVRREIAETIA 180
+ F+ V+A+++ +++ + REQI K VP+V+VGNKC+L + V A+ +A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA 134
Query: 181 LYDWQCGFVECSAKENYNIVQVFKELLAQAK 211
+ ++E SAK + F L+ + +
Sbjct: 135 R-SYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 77.8 bits (190), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 84/151 (55%), Gaps = 3/151 (1%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS++ Q + + F+ Y T+E+ +R + + DG LDILDT+G + AMR+ + T
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCLLDILDTAGQEEASAMRDQYMRT 74
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVN-KRGLMVPIVVVGNKCELEFKDVRREIAETIA 180
+ F+ V+A+++ +++ + REQI K VP+V+VGNKC+L + V A+ +A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA 134
Query: 181 LYDWQCGFVECSAKENYNIVQVFKELLAQAK 211
+ ++E SAK + F L+ + +
Sbjct: 135 -RSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 77.8 bits (190), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 85/151 (56%), Gaps = 3/151 (1%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS++ Q + + F+ Y T+E+ +R + + DG LDILDT+G ++ AMR+ + T
Sbjct: 17 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCLLDILDTAGQEEYSAMRDQYMRT 75
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVN-KRGLMVPIVVVGNKCELEFKDVRREIAETIA 180
+ F+ V+A+++ +++ + REQI K VP+V+VGNK +L + V + A+ +A
Sbjct: 76 GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPSRTVDTKQAQDLA 135
Query: 181 LYDWQCGFVECSAKENYNIVQVFKELLAQAK 211
+ F+E SAK + F L+ + +
Sbjct: 136 R-SYGIPFIETSAKTRQGVDDAFYTLVREIR 165
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 77.8 bits (190), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 85/151 (56%), Gaps = 3/151 (1%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS++ Q + + F+ Y T+E+ +R + + DG LDILDT+G ++ AMR+ + T
Sbjct: 17 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCLLDILDTAGQEEYSAMRDQYMRT 75
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVN-KRGLMVPIVVVGNKCELEFKDVRREIAETIA 180
+ F+ V+A+++ +++ + REQI K VP+V+VGNK +L + V + A+ +A
Sbjct: 76 GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPSRTVDTKQAQDLA 135
Query: 181 LYDWQCGFVECSAKENYNIVQVFKELLAQAK 211
+ F+E SAK + F L+ + +
Sbjct: 136 R-SYGIPFIETSAKTRQGVDDAFYTLVREIR 165
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 77.4 bits (189), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 85/151 (56%), Gaps = 3/151 (1%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS++ Q + + F+ Y T+E+ +R + + DG LDILDT+G ++ AMR+ + T
Sbjct: 17 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCLLDILDTAGQEEYSAMRDQYMRT 75
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVN-KRGLMVPIVVVGNKCELEFKDVRREIAETIA 180
+ F+ V+A+++ +++ + REQI K VP+V+VGNK +L + V + A+ +A
Sbjct: 76 GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPSRTVDTKQAQDLA 135
Query: 181 LYDWQCGFVECSAKENYNIVQVFKELLAQAK 211
+ F+E SAK + F L+ + +
Sbjct: 136 -RSYGIPFIETSAKTRQGVDDAFYTLVREIR 165
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 84/151 (55%), Gaps = 3/151 (1%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS++ Q + + F+ Y T+E+ +R + + DG LDILDT+G ++ AMR+ + T
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVN-KRGLMVPIVVVGNKCELEFKDVRREIAETIA 180
+ F+ V+A+++ +++ + REQI K VP+V+VGNK +L + V A+ +A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLA 134
Query: 181 LYDWQCGFVECSAKENYNIVQVFKELLAQAK 211
+ ++E SAK + F L+ + +
Sbjct: 135 R-SYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 86/148 (58%), Gaps = 4/148 (2%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS++ QF+ F++ Y T+E+ + + + D A LDILDT+G +F AMRE + T
Sbjct: 18 KSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRA-ARLDILDTAGQEEFGAMREQYMRT 76
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVN-KRGLMVPIVVVGNKCELEF-KDVRREIAETI 179
+ F+LV++V D +++ + + QI+ K P++++GNK +L+ + V +E + +
Sbjct: 77 GEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQL 136
Query: 180 ALYDWQCGFVECSAKENYNIVQVFKELL 207
A + ++E SAK N+ Q F EL+
Sbjct: 137 A-RQLKVTYMEASAKIRMNVDQAFHELV 163
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 80/148 (54%), Gaps = 4/148 (2%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS++ QF+ F+S Y T+E+ + + DG LDILDT+G +F AMRE +
Sbjct: 22 KSALTIQFIQSYFVSDYDPTIEDSYTKICSV-DGIPARLDILDTAGQEEFGAMREQYMRA 80
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVN-KRGLMVPIVVVGNKCELEF-KDVRREIAETI 179
F+LV+A++D +++ V L QI+ K P+V+VGNK +LE + V R A
Sbjct: 81 GHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAF 140
Query: 180 ALYDWQCGFVECSAKENYNIVQVFKELL 207
+ E SAK N+ + F++L+
Sbjct: 141 GA-SHHVAYFEASAKLRLNVDEAFEQLV 167
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 73.9 bits (180), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 83/149 (55%), Gaps = 5/149 (3%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS++ QF F+ Y T+E+ +R E+ D LD+LDT+G +F AMRE + T
Sbjct: 31 KSALTIQFFQKIFVDEYDPTIEDSYRKHTEI-DNQWAILDVLDTAGQEEFSAMREQYMRT 89
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVN-KRGLMVPIVVVGNKCEL-EFKDVRREIAETI 179
D F++VY+V D ++++ V + I+ K P+++V NK +L + V R+ + +
Sbjct: 90 GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 149
Query: 180 ALYDWQCGFVECSAKE-NYNIVQVFKELL 207
A + ++E SAK+ N+ + F +L+
Sbjct: 150 AT-KYNIPYIETSAKDPPLNVDKTFHDLV 177
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 83/151 (54%), Gaps = 3/151 (1%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS++ Q + + F+ Y T+E+ +R + + DG LDILDT+ ++ AMR+ + T
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCLLDILDTAAQEEYSAMRDQYMRT 74
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVN-KRGLMVPIVVVGNKCELEFKDVRREIAETIA 180
+ F+ V+A+++ +++ + REQI K VP+V+VGNK +L + V A+ +A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDLAARTVESRQAQDLA 134
Query: 181 LYDWQCGFVECSAKENYNIVQVFKELLAQAK 211
+ ++E SAK + F L+ + +
Sbjct: 135 R-SYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 83/151 (54%), Gaps = 3/151 (1%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS++ Q + + F+ Y T+E+ +R + + DG LDILDT+ ++ AMR+ + T
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCLLDILDTAAQEEYSAMRDQYMRT 74
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVN-KRGLMVPIVVVGNKCELEFKDVRREIAETIA 180
+ F+ V+A+++ +++ + REQI K VP+V+VGNK +L + V A+ +A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDLAARTVESRQAQDLA 134
Query: 181 LYDWQCGFVECSAKENYNIVQVFKELLAQAK 211
+ ++E SAK + F L+ + +
Sbjct: 135 R-SYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 83/151 (54%), Gaps = 3/151 (1%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS++ Q + + F+ T+E+ +R + + DG LDILDT+G ++ AMR+ + T
Sbjct: 16 KSALTIQLIQNHFVDECDPTIEDSYRKQVVI-DGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVN-KRGLMVPIVVVGNKCELEFKDVRREIAETIA 180
+ F+ V+A+++ +++ + REQI K VP+V+VGNK +L + V A+ +A
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLA 134
Query: 181 LYDWQCGFVECSAKENYNIVQVFKELLAQAK 211
+ ++E SAK + F L+ + +
Sbjct: 135 -RSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 70.9 bits (172), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 82/149 (55%), Gaps = 5/149 (3%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS++ QF F+ Y T+E+ + E+ D LD+LDT+G +F AMRE + T
Sbjct: 31 KSALTIQFFQKIFVPEYDPTIEDSYLKHTEI-DNQWAILDVLDTAGQEEFSAMREQYMRT 89
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVN-KRGLMVPIVVVGNKCEL-EFKDVRREIAETI 179
D F++VY+V D ++++ V + I+ K P+++V NK +L + V R+ + +
Sbjct: 90 GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 149
Query: 180 ALYDWQCGFVECSAKE-NYNIVQVFKELL 207
A + ++E SAK+ N+ + F +L+
Sbjct: 150 AT-KYNIPYIETSAKDPPLNVDKTFHDLV 177
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 82/149 (55%), Gaps = 5/149 (3%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS++ QF F+ Y T+E+ + E+ D LD+LDT+G +F AMRE + T
Sbjct: 26 KSALTIQFFQKIFVPDYDPTIEDSYLKHTEI-DNQWAILDVLDTAGQEEFSAMREQYMRT 84
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVN-KRGLMVPIVVVGNKCEL-EFKDVRREIAETI 179
D F++VY+V D ++++ V + I+ K P+++V NK +L + V R+ + +
Sbjct: 85 GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 144
Query: 180 ALYDWQCGFVECSAKE-NYNIVQVFKELL 207
A + ++E SAK+ N+ + F +L+
Sbjct: 145 AT-KYNIPYIETSAKDPPLNVDKTFHDLV 172
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 82/149 (55%), Gaps = 5/149 (3%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS++ QF F+ Y T+E+ + E+ D LD+LDT+G +F AMRE + T
Sbjct: 31 KSALTIQFFQKIFVDDYDPTIEDSYLKHTEI-DNQWAILDVLDTAGQEEFSAMREQYMRT 89
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVN-KRGLMVPIVVVGNKCEL-EFKDVRREIAETI 179
D F++VY+V D ++++ V + I+ K P+++V NK +L + V R+ + +
Sbjct: 90 GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 149
Query: 180 ALYDWQCGFVECSAKE-NYNIVQVFKELL 207
A + ++E SAK+ N+ + F +L+
Sbjct: 150 AT-KYNIPYIETSAKDPPLNVDKTFHDLV 177
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 85/156 (54%), Gaps = 12/156 (7%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KSS+ QF+ +F+ Y T+E + +G + L ++DT+G ++ +
Sbjct: 19 KSSLTIQFVEGQFVDSYDPTIENTFTKLITV-NGQEYHLQLVDTAGQDEYSIFPQTYSID 77
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRG-LMVPIVVVGNKCELEFKDV-----RREI 175
+ ++LVY+V +++V+K + ++++ G + +PI++VGNK +L + V + +
Sbjct: 78 INGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKAL 137
Query: 176 AETIALYDWQCGFVECSAKENYNIVQVFKELLAQAK 211
AE+ W F+E SAKEN V VF+ ++ +A+
Sbjct: 138 AES-----WNAAFLESSAKENQTAVDVFRRIILEAE 168
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 85/156 (54%), Gaps = 12/156 (7%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KSS+ QF+ +F+ Y T+E + +G + L ++DT+G ++ +
Sbjct: 19 KSSLTIQFVEGQFVDSYDPTIENTFTKLITV-NGQEYHLQLVDTAGQDEYSIFPQTYSID 77
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRG-LMVPIVVVGNKCELEFKDV-----RREI 175
+ ++LVY+V +++V+K + ++++ G + +PI++VGNK +L + V + +
Sbjct: 78 INGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKAL 137
Query: 176 AETIALYDWQCGFVECSAKENYNIVQVFKELLAQAK 211
AE+ W F+E SAKEN V VF+ ++ +A+
Sbjct: 138 AES-----WNAAFLESSAKENQTAVDVFRRIILEAE 168
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 85/156 (54%), Gaps = 12/156 (7%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KSS+ QF+ +F+ Y T+E + +G + L ++DT+G ++ +
Sbjct: 14 KSSLTIQFVEGQFVDSYDPTIENTFTKLITV-NGQEYHLQLVDTAGQDEYSIFPQTYSID 72
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRG-LMVPIVVVGNKCELEFKDV-----RREI 175
+ ++LVY+V +++V+K + ++++ G + +PI++VGNK +L + V + +
Sbjct: 73 INGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKAL 132
Query: 176 AETIALYDWQCGFVECSAKENYNIVQVFKELLAQAK 211
AE+ W F+E SAKEN V VF+ ++ +A+
Sbjct: 133 AES-----WNAAFLESSAKENQTAVDVFRRIILEAE 163
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 90/168 (53%), Gaps = 20/168 (11%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS+++ +FL RFI Y T+E +R + + D ++++ILDT+G + RE +
Sbjct: 41 KSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEV-VSMEILDTAGQ-EDTIQREGHMRW 98
Query: 122 ADAFVLVYAVDDASTWDVV---KDLREQIVNKRGLMVPIVVVGNKCELEF-KDVRREIAE 177
+ FVLVY + D +++ V K++ ++I K+ V +++VGNK +L+ + V E E
Sbjct: 99 GEGFVLVYDITDRGSFEEVLPLKNILDEI--KKPKNVTLILVGNKADLDHSRQVSTEEGE 156
Query: 178 TIALYDWQCGFVECSA-KENYNIVQVFKELLAQAKVQYNLSPAVRRRR 224
+A + C F ECSA NI ++F Y L VRRRR
Sbjct: 157 KLAT-ELACAFYECSACTGEGNITEIF----------YELCREVRRRR 193
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 86/159 (54%), Gaps = 18/159 (11%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQ---FPAMRELS 118
KSS+ QF+ +F+ T+E + +G + L ++DT+G + FP +
Sbjct: 17 KSSLTIQFVEGQFVDSADPTIENTFTKLITV-NGQEYHLQLVDTAGQDEYSIFPQTYSID 75
Query: 119 ISTADAFVLVYAVDDASTWDVVKDLREQIVNKRG-LMVPIVVVGNKCELEFKDV-----R 172
I + ++LVY+V +++V+K + ++++ G + +PI++VGNK +L + V
Sbjct: 76 I---NGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEG 132
Query: 173 REIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQAK 211
+ +AE+ W F+E SAKEN V VF+ ++ +A+
Sbjct: 133 KALAES-----WNAAFLESSAKENQTAVDVFRRIILEAE 166
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 89/154 (57%), Gaps = 8/154 (5%)
Query: 62 KSSIISQFLYDRFISRYKET--VEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSI 119
KSS++++++ ++F S+ T VE L+R + E+ DG +TL I DT+G +F ++R
Sbjct: 20 KSSLMNRYVTNKFDSQAFHTIGVEFLNR-DLEV-DGRFVTLQIWDTAGQERFKSLRTPFY 77
Query: 120 STADAFVLVYAVDDASTWDVVKDLREQIVN----KRGLMVPIVVVGNKCELEFKDVRREI 175
AD +L ++VDD +++ + + +++ + K P VV+GNK + E + V E
Sbjct: 78 RGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKVDKEDRQVTTEE 137
Query: 176 AETIALYDWQCGFVECSAKENYNIVQVFKELLAQ 209
A+T + + ++E SAK++ N+ F+E + Q
Sbjct: 138 AQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQ 171
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 76/146 (52%), Gaps = 4/146 (2%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+SII++F YD F + Y+ T+ + D + L + DT+G +F ++ I
Sbjct: 14 KTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRD 73
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAE--TI 179
+ A ++VY + + +++ + I+N+RG V I +VGNK +L D+R+ E
Sbjct: 74 SAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDL--GDLRKVTYEEGXQ 131
Query: 180 ALYDWQCGFVECSAKENYNIVQVFKE 205
++ F E SAK +NI +FK+
Sbjct: 132 KAQEYNTXFHETSAKAGHNIKVLFKK 157
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 78/148 (52%), Gaps = 2/148 (1%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+S+I++F+YD F + Y+ T+ + + + L + DT+G +F ++ I
Sbjct: 26 KTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRD 85
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIA 180
+ A V+VY + + +++ + + +RG V I++VGNK +L K V E E A
Sbjct: 86 SAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKA 145
Query: 181 LYDWQCGFVECSAKENYNIVQVFKELLA 208
+ F+E SAK YN+ Q+F+ + A
Sbjct: 146 -KELNVMFIETSAKAGYNVKQLFRRVAA 172
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 78/148 (52%), Gaps = 2/148 (1%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+S+I++F+YD F + Y+ T+ + + + L + DT+G +F ++ I
Sbjct: 19 KTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRD 78
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIA 180
+ A V+VY + + +++ + + +RG V I++VGNK +L K V E E A
Sbjct: 79 SAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKA 138
Query: 181 LYDWQCGFVECSAKENYNIVQVFKELLA 208
+ F+E SAK YN+ Q+F+ + A
Sbjct: 139 -KELNVMFIETSAKAGYNVKQLFRRVAA 165
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 81/150 (54%), Gaps = 6/150 (4%)
Query: 62 KSSIISQFLYDRFISRYKETV--EELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSI 119
K+S+I++F+YD F + Y+ T+ + L + Y L D + L + DT+G +F ++ I
Sbjct: 27 KTSLITRFMYDSFDNTYQATIGIDFLSKTMY-LED-RTVRLQLWDTAGQERFRSLIPSYI 84
Query: 120 STADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAET 178
+ V+VY + + +++ + + +RG V I++VGNK +L K V E E
Sbjct: 85 RDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGER 144
Query: 179 IALYDWQCGFVECSAKENYNIVQVFKELLA 208
A + F+E SAK YN+ Q+F+ + A
Sbjct: 145 KA-KELNVMFIETSAKAGYNVKQLFRRVAA 173
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 81/165 (49%), Gaps = 15/165 (9%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+ ++ F D+F Y TV E + + E+ DG Q+ L + DT+G + +R LS
Sbjct: 20 KTCLLIVFSKDQFPEVYVPTVFENYVADIEV-DGKQVELALWDTAGQEDYDRLRPLSYPD 78
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKD-VRREIAET-- 178
D ++ +++D + + + + V VPI++VGNK +L + RRE+A+
Sbjct: 79 TDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQ 138
Query: 179 ----------IALYDWQCGFVECSAKENYNIVQVFKELLAQAKVQ 213
+A G++ECSAK + +VF E+ +A +Q
Sbjct: 139 EPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATRAALQ 182
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 57.4 bits (137), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 81/165 (49%), Gaps = 15/165 (9%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+ ++ F D+F Y TV E + + E+ DG Q+ L + DT+G + +R LS
Sbjct: 20 KTCLLIVFSKDQFPEVYVPTVFENYVADIEV-DGKQVELALWDTAGQEDYDRLRPLSYPD 78
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKD-VRREIAET-- 178
D ++ +++D + + + + V VPI++VGNK +L + RRE+A+
Sbjct: 79 TDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQ 138
Query: 179 ----------IALYDWQCGFVECSAKENYNIVQVFKELLAQAKVQ 213
+A G++ECSAK + +VF E+ +A +Q
Sbjct: 139 EPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATRAALQ 182
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 57.4 bits (137), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 82/165 (49%), Gaps = 15/165 (9%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+ ++ F D+F Y TV E + + E+ DG Q+ L + DT+G + +R LS
Sbjct: 38 KTCLLIVFSKDQFPEVYVPTVFENYIADIEV-DGKQVELALWDTAGQEDYDRLRPLSYPD 96
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCEL-EFKDVRREIAET-- 178
D ++ +++D + + + + V VPI++VGNK +L + + RRE+A+
Sbjct: 97 TDVILMCFSIDSPDSLENIPEKWTPEVKHFXPNVPIILVGNKKDLRQDEHTRRELAKMKQ 156
Query: 179 ----------IALYDWQCGFVECSAKENYNIVQVFKELLAQAKVQ 213
+A G++ECSAK + +VF E+ +A +Q
Sbjct: 157 EPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF-EMATRAGLQ 200
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 57.4 bits (137), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 81/165 (49%), Gaps = 15/165 (9%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+ ++ F D+F Y TV E + + E+ DG Q+ L + DT+G + +R LS
Sbjct: 18 KTCLLIVFSKDQFPEVYVPTVFENYVADIEV-DGKQVELALWDTAGQEDYDRLRPLSYPD 76
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKD-VRREIAET-- 178
D ++ +++D + + + + V VPI++VGNK +L + RRE+A+
Sbjct: 77 TDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQ 136
Query: 179 ----------IALYDWQCGFVECSAKENYNIVQVFKELLAQAKVQ 213
+A G++ECSAK + +VF E+ +A +Q
Sbjct: 137 EPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATRAALQ 180
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 57.4 bits (137), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 76/153 (49%), Gaps = 4/153 (2%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+S+++Q++ +F ++YK T+ + + D +T+ I DT+G +F ++
Sbjct: 21 KTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRG 80
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLM----VPIVVVGNKCELEFKDVRREIAE 177
AD VLV+ V +T+ + R++ + + P VV+GNK +LE + V + A+
Sbjct: 81 ADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQ 140
Query: 178 TIALYDWQCGFVECSAKENYNIVQVFKELLAQA 210
+ E SAKE N+ Q F+ + A
Sbjct: 141 AWCYSKNNIPYFETSAKEAINVEQAFQTIARNA 173
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 81/165 (49%), Gaps = 15/165 (9%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+ ++ F D+F Y TV E + + E+ DG Q+ L + DT+G + +R LS
Sbjct: 21 KTCLLIVFSKDQFPEVYVPTVFENYVADIEV-DGKQVELALWDTAGQEDYDRLRPLSYPD 79
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKD-VRREIAET-- 178
D ++ +++D + + + + V VPI++VGNK +L + RRE+A+
Sbjct: 80 TDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQ 139
Query: 179 ----------IALYDWQCGFVECSAKENYNIVQVFKELLAQAKVQ 213
+A G++ECSAK + +VF E+ +A +Q
Sbjct: 140 EPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATRAALQ 183
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 81/165 (49%), Gaps = 15/165 (9%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+ ++ F D+F Y TV E + + E+ DG Q+ L + DT+G + +R LS
Sbjct: 22 KTCLLIVFSKDQFPEVYVPTVFENYVADIEV-DGKQVELALWDTAGQEDYDRLRPLSYPD 80
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKD-VRREIAET-- 178
D ++ +++D + + + + V VPI++VGNK +L + RRE+A+
Sbjct: 81 TDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQ 140
Query: 179 ----------IALYDWQCGFVECSAKENYNIVQVFKELLAQAKVQ 213
+A G++ECSAK + +VF E+ +A +Q
Sbjct: 141 EPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATRAALQ 184
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 82/149 (55%), Gaps = 6/149 (4%)
Query: 62 KSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIS 120
KSS++++++ ++F S+ T+ E + E+ DG +T+ I DT+G +F ++R
Sbjct: 24 KSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEV-DGHFVTMQIWDTAGQERFRSLRTPFYR 82
Query: 121 TADAFVLVYAVDDASTWDVVKDLREQIVN----KRGLMVPIVVVGNKCELEFKDVRREIA 176
+D +L ++VDD+ ++ + + +++ + K P V++GNK +++ + V E A
Sbjct: 83 GSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKTDIKERQVSTEEA 142
Query: 177 ETIALYDWQCGFVECSAKENYNIVQVFKE 205
+ + + E SAK++ N+ F+E
Sbjct: 143 QAWCKDNGDYPYFETSAKDSTNVAAAFEE 171
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 76/153 (49%), Gaps = 4/153 (2%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+S+++Q++ +F ++YK T+ + + D +T+ I DT+G +F ++
Sbjct: 21 KTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGLERFQSLGVAFYRG 80
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLM----VPIVVVGNKCELEFKDVRREIAE 177
AD VLV+ V +T+ + R++ + + P VV+GNK +LE + V + A+
Sbjct: 81 ADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQ 140
Query: 178 TIALYDWQCGFVECSAKENYNIVQVFKELLAQA 210
+ E SAKE N+ Q F+ + A
Sbjct: 141 AWCYSKNNIPYFETSAKEAINVEQAFQTIARNA 173
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 57.0 bits (136), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 82/165 (49%), Gaps = 15/165 (9%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+ ++ F D+F Y TV E + + E+ DG Q+ L + DT+G + +R LS
Sbjct: 38 KTCLLIVFSKDQFPEVYVPTVFENYIADIEV-DGKQVELALWDTAGQEDYDRLRPLSYPD 96
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCEL-EFKDVRREIAET-- 178
D ++ +++D + + + + V VPI++VGNK +L + + RRE+A+
Sbjct: 97 TDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQ 156
Query: 179 ----------IALYDWQCGFVECSAKENYNIVQVFKELLAQAKVQ 213
+A G++ECSAK + +VF E+ +A +Q
Sbjct: 157 EPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF-EMATRAGLQ 200
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 57.0 bits (136), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 81/165 (49%), Gaps = 15/165 (9%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+ ++ F D+F Y TV E + + E+ DG Q+ L + DT+G + +R LS
Sbjct: 20 KTCLLIVFSKDQFPEVYVPTVFENYVADIEV-DGKQVELALWDTAGQEDYDRLRPLSYPD 78
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKD-VRREIAET-- 178
D ++ +++D + + + + V VPI++VGNK +L + RRE+A+
Sbjct: 79 TDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQ 138
Query: 179 ----------IALYDWQCGFVECSAKENYNIVQVFKELLAQAKVQ 213
+A G++ECSAK + +VF E+ +A +Q
Sbjct: 139 EPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATRAALQ 182
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 57.0 bits (136), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 81/165 (49%), Gaps = 15/165 (9%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+ ++ F D+F Y TV E + + E+ DG Q+ L + DT+G + +R LS
Sbjct: 19 KTCLLIVFSKDQFPEVYVPTVFENYVADIEV-DGKQVELALWDTAGQEDYDRLRPLSYPD 77
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKD-VRREIAET-- 178
D ++ +++D + + + + V VPI++VGNK +L + RRE+A+
Sbjct: 78 TDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQ 137
Query: 179 ----------IALYDWQCGFVECSAKENYNIVQVFKELLAQAKVQ 213
+A G++ECSAK + +VF E+ +A +Q
Sbjct: 138 EPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATRAALQ 181
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 76/153 (49%), Gaps = 4/153 (2%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+S+++Q++ +F ++YK T+ + + D +T+ I DT+G +F ++
Sbjct: 21 KTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRG 80
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLM----VPIVVVGNKCELEFKDVRREIAE 177
AD VLV+ V +T+ + R++ + + P VV+GNK +LE + V + A+
Sbjct: 81 ADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQ 140
Query: 178 TIALYDWQCGFVECSAKENYNIVQVFKELLAQA 210
+ E SAKE N+ Q F+ + A
Sbjct: 141 AWCYSKNNIPYFETSAKEAINVEQAFQTIARNA 173
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 78/154 (50%), Gaps = 12/154 (7%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+S+ QF+ F Y TVE + L + L ++DT+G ++ + I
Sbjct: 37 KTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGK-DEFHLHLVDTAGQDEYSILPYSFIIG 95
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRG-LMVPIVVVGNKCEL----EFKDVR-REI 175
+VLVY+V ++ V++ L +++ G VP+V+VGNK +L E + V +++
Sbjct: 96 VHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKL 155
Query: 176 AETIALYDWQCGFVECSAKENYNIVQVFKELLAQ 209
AE+ W F+E SA+EN +F +++ +
Sbjct: 156 AES-----WGATFMESSARENQLTQGIFTKVIQE 184
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 81/165 (49%), Gaps = 15/165 (9%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+ ++ F D+F Y TV E + + E+ DG Q+ L + DT+G + +R LS
Sbjct: 19 KTCLLIVFSKDQFPEVYVPTVFENYVADIEV-DGKQVELALWDTAGQEDYDRLRPLSYPD 77
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKD-VRREIAET-- 178
D ++ +++D + + + + V VPI++VGNK +L + RRE+A+
Sbjct: 78 TDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQ 137
Query: 179 ----------IALYDWQCGFVECSAKENYNIVQVFKELLAQAKVQ 213
+A G++ECSAK + +VF E+ +A +Q
Sbjct: 138 EPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATRAALQ 181
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 78/148 (52%), Gaps = 2/148 (1%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+S+I++F+YD F + Y+ T+ + + + L + DT+G +F ++ I
Sbjct: 29 KTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLERFRSLIPSYIRD 88
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCEL-EFKDVRREIAETIA 180
+ V+VY + + +++ + + +RG V I++VGNK +L + + V E E A
Sbjct: 89 STVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKA 148
Query: 181 LYDWQCGFVECSAKENYNIVQVFKELLA 208
+ F+E SAK YN+ Q+F+ + A
Sbjct: 149 -KELNVMFIETSAKAGYNVKQLFRRVAA 175
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 75/153 (49%), Gaps = 4/153 (2%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+S+++Q++ +F ++YK T+ + + D +T+ I DT+G +F ++
Sbjct: 21 KTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRG 80
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLM----VPIVVVGNKCELEFKDVRREIAE 177
AD VLV+ V +T+ + R++ + + P VV+GNK + E + V + A+
Sbjct: 81 ADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDFENRQVATKRAQ 140
Query: 178 TIALYDWQCGFVECSAKENYNIVQVFKELLAQA 210
+ E SAKE N+ Q F+ + A
Sbjct: 141 AWCYSKNNIPYFETSAKEAINVEQAFQTIARNA 173
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 78/148 (52%), Gaps = 2/148 (1%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+S+I++F+YD F + Y+ T+ + + + L + DT+G +F ++ I
Sbjct: 19 KTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLERFRSLIPSYIRD 78
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCEL-EFKDVRREIAETIA 180
+ V+VY + + +++ + + +RG V I++VGNK +L + + V E E A
Sbjct: 79 STVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKA 138
Query: 181 LYDWQCGFVECSAKENYNIVQVFKELLA 208
+ F+E SAK YN+ Q+F+ + A
Sbjct: 139 -KELNVMFIETSAKAGYNVKQLFRRVAA 165
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 83/170 (48%), Gaps = 19/170 (11%)
Query: 72 DRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLVYAV 131
D+F Y TV E + + E+ DG Q+ L + DT+G + +R LS D ++ +++
Sbjct: 28 DQFPEVYVPTVFENYIADIEV-DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSI 86
Query: 132 DDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCEL-EFKDVRREIAET------------ 178
D + + + + V VPI++VGNK +L + + RRE+A+
Sbjct: 87 DSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRD 146
Query: 179 IALYDWQCGFVECSAKENYNIVQVFKELLAQAKVQYNLSPAVRRRRQSLP 228
+A G++ECSAK + +VF E+ +A +Q + +RR+ P
Sbjct: 147 MANRISAFGYLECSAKTKEGVREVF-EMATRAGLQVRKN----KRRRGCP 191
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 81/150 (54%), Gaps = 6/150 (4%)
Query: 62 KSSIISQFLYDRFISRYKETV--EELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSI 119
K+S+I++F+YD F + Y+ T+ + L + Y L D + L + DT+G +F ++ I
Sbjct: 14 KTSLITRFMYDSFDNTYQATIGIDFLSKTMY-LEDRT-VRLQLWDTAGQERFRSLIPSYI 71
Query: 120 STADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAET 178
+ V+VY + + +++ + + +RG V I++VGNK +L K V E E
Sbjct: 72 RDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGER 131
Query: 179 IALYDWQCGFVECSAKENYNIVQVFKELLA 208
A + F+E SAK YN+ Q+F+ + A
Sbjct: 132 KA-KELNVMFIETSAKAGYNVKQLFRRVAA 160
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 76/155 (49%), Gaps = 15/155 (9%)
Query: 72 DRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLVYAV 131
D+F Y TV E + + E+ DG Q+ L + DT+G + +R LS D ++ +++
Sbjct: 28 DQFPEVYVPTVFENYVADIEV-DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSI 86
Query: 132 DDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKD-VRREIAET------------ 178
D + + + + V VPI++VGNK +L + RRE+A+
Sbjct: 87 DSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRD 146
Query: 179 IALYDWQCGFVECSAKENYNIVQVFKELLAQAKVQ 213
+A G++ECSAK + +VF E+ +A +Q
Sbjct: 147 MANRIGAFGYMECSAKTKDGVREVF-EMATRAALQ 180
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 76/155 (49%), Gaps = 15/155 (9%)
Query: 72 DRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLVYAV 131
D+F Y TV E + + E+ DG Q+ L + DT+G + +R LS D ++ +++
Sbjct: 28 DQFPEVYVPTVFENYVADIEV-DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSI 86
Query: 132 DDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKD-VRREIAET------------ 178
D + + + + V VPI++VGNK +L + RRE+A+
Sbjct: 87 DSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRD 146
Query: 179 IALYDWQCGFVECSAKENYNIVQVFKELLAQAKVQ 213
+A G++ECSAK + +VF E+ +A +Q
Sbjct: 147 MANRIGAFGYMECSAKTKDGVREVF-EMATRAALQ 180
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 81/169 (47%), Gaps = 23/169 (13%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+ ++ F D+F + Y TV E + + E+ DG Q+ L + DT+G + R LS
Sbjct: 18 KTCLLIVFSKDQFPAVYVPTVFENYVADIEV-DGKQVELALWDTAGQEDYDRARPLSYPD 76
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCEL--------EFKDVR- 172
D ++ +++D + + + + V VPI++VGNK +L E ++
Sbjct: 77 TDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTARELAKMKQ 136
Query: 173 --------REIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQAKVQ 213
R++A I + G++ECSAK + +VF E+ +A +Q
Sbjct: 137 EPVKPAEGRDMANRIGAF----GYMECSAKTKDGVREVF-EMATRAALQ 180
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 76/155 (49%), Gaps = 15/155 (9%)
Query: 72 DRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLVYAV 131
D+F Y TV E + + E+ DG Q+ L + DT+G + +R LS D ++ +++
Sbjct: 26 DQFPEVYVPTVFENYVADIEV-DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSI 84
Query: 132 DDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKD-VRREIAET------------ 178
D + + + + V VPI++VGNK +L + RRE+A+
Sbjct: 85 DSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRD 144
Query: 179 IALYDWQCGFVECSAKENYNIVQVFKELLAQAKVQ 213
+A G++ECSAK + +VF E+ +A +Q
Sbjct: 145 MANRIGAFGYMECSAKTKDGVREVF-EMATRAALQ 178
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 80/149 (53%), Gaps = 6/149 (4%)
Query: 62 KSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIS 120
KSS++++++ ++F ++ T+ E + E+ DG +T+ I DT+G +F ++R
Sbjct: 22 KSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEV-DGHFVTMQIWDTAGQERFRSLRTPFYR 80
Query: 121 TADAFVLVYAVDDASTWDVVKDLREQIVN----KRGLMVPIVVVGNKCELEFKDVRREIA 176
+D +L ++VDD+ ++ + + +++ + K P V++GNK ++ + V E A
Sbjct: 81 GSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEA 140
Query: 177 ETIALYDWQCGFVECSAKENYNIVQVFKE 205
+ + + E SAK+ N+ F+E
Sbjct: 141 QAWCRDNGDYPYFETSAKDATNVAAAFEE 169
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 76/155 (49%), Gaps = 15/155 (9%)
Query: 72 DRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLVYAV 131
D+F Y TV E + + E+ DG Q+ L + DT+G + +R LS D ++ +++
Sbjct: 31 DQFPEVYVPTVFENYVADIEV-DGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSI 89
Query: 132 DDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKD-VRREIAET------------ 178
D + + + + V VPI++VGNK +L + RRE+A+
Sbjct: 90 DSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRD 149
Query: 179 IALYDWQCGFVECSAKENYNIVQVFKELLAQAKVQ 213
+A G++ECSAK + +VF E+ +A +Q
Sbjct: 150 MANRIGAFGYMECSAKTKDGVREVF-EMATRAALQ 183
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 76/155 (49%), Gaps = 15/155 (9%)
Query: 72 DRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLVYAV 131
D+F Y TV E + + E+ DG Q+ L + DT+G + +R LS D ++ +++
Sbjct: 28 DQFPEVYVPTVFENYVADIEV-DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSI 86
Query: 132 DDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKD-VRREIAET------------ 178
D + + + + V VPI++VGNK +L + RRE+A+
Sbjct: 87 DSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRD 146
Query: 179 IALYDWQCGFVECSAKENYNIVQVFKELLAQAKVQ 213
+A G++ECSAK + +VF E+ +A +Q
Sbjct: 147 MANRIGAFGYMECSAKTKDGVREVF-EMATRAALQ 180
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 80/149 (53%), Gaps = 6/149 (4%)
Query: 62 KSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIS 120
KSS++++++ ++F ++ T+ E + E+ DG +T+ I DT+G +F ++R
Sbjct: 20 KSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEV-DGHFVTMQIWDTAGQERFRSLRTPFYR 78
Query: 121 TADAFVLVYAVDDASTWDVVKDLREQIVN----KRGLMVPIVVVGNKCELEFKDVRREIA 176
+D +L ++VDD+ ++ + + +++ + K P V++GNK ++ + V E A
Sbjct: 79 GSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEA 138
Query: 177 ETIALYDWQCGFVECSAKENYNIVQVFKE 205
+ + + E SAK+ N+ F+E
Sbjct: 139 QAWCRDNGDYPYFETSAKDATNVAAAFEE 167
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 53.9 bits (128), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 73/153 (47%), Gaps = 2/153 (1%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+ ++ +F D F S + T+ + DG ++ L I DT+G +F +
Sbjct: 19 KTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG 78
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIA 180
A +LVY + + ++D +++ I V +++GNKC++ K V +E E +A
Sbjct: 79 AMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLA 138
Query: 181 LYDWQCGFVECSAKENYNIVQVFKELLAQAKVQ 213
L D+ F+E SAK N N+ F L K +
Sbjct: 139 L-DYGIKFMETSAKANINVENAFFTLARDIKAK 170
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 73/153 (47%), Gaps = 2/153 (1%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+ ++ +F D F S + T+ + DG ++ L I DT+G +F +
Sbjct: 21 KTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG 80
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIA 180
A +LVY + + ++D +++ I V +++GNKC++ K V +E E +A
Sbjct: 81 AMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLA 140
Query: 181 LYDWQCGFVECSAKENYNIVQVFKELLAQAKVQ 213
L D+ F+E SAK N N+ F L K +
Sbjct: 141 L-DYGIKFMETSAKANINVENAFFTLARDIKAK 172
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 81/148 (54%), Gaps = 6/148 (4%)
Query: 62 KSSIISQFLYDRFISRYKETV--EELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSI 119
K+S+I++F+YD F + Y+ T+ + L + Y L D + L + DT+G +F ++ I
Sbjct: 15 KTSLITRFMYDSFDNTYQATIGIDFLSKTMY-LEDRT-VRLQLWDTAGQERFRSLIPSYI 72
Query: 120 STADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCEL-EFKDVRREIAET 178
+ V+VY + + +++ + + +RG V I++VGNK +L + + + E E
Sbjct: 73 RDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADKRQITIEEGEQ 132
Query: 179 IALYDWQCGFVECSAKENYNIVQVFKEL 206
A + F+E SAK YN+ Q+F+ +
Sbjct: 133 RA-KELSVMFIETSAKTGYNVKQLFRRV 159
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 71/146 (48%), Gaps = 14/146 (9%)
Query: 72 DRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLVYAV 131
D+F Y TV E + + E+ DG Q+ L + DT+G + +R LS D ++ +++
Sbjct: 26 DQFPEVYVPTVFENYVADIEV-DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSI 84
Query: 132 DDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKD-VRREIAET------------ 178
D + + + + V VPI++VGNK +L + RRE+A+
Sbjct: 85 DSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRD 144
Query: 179 IALYDWQCGFVECSAKENYNIVQVFK 204
+A G++ECSAK + +VF+
Sbjct: 145 MANRIGAFGYMECSAKTKDGVREVFE 170
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 10/155 (6%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS ++ +F D + Y T+ + DG + L I DT+G +F +
Sbjct: 29 KSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRG 88
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDV-----RREIA 176
A ++VY V D +++ VK ++I V ++VGNKC+L K V +E A
Sbjct: 89 AHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFA 148
Query: 177 ETIALYDWQCGFVECSAKENYNIVQVFKELLAQAK 211
+++ + F+E SAK N+ Q F + A+ K
Sbjct: 149 DSLGI-----PFLETSAKNATNVEQSFMTMAAEIK 178
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 72/151 (47%), Gaps = 10/151 (6%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+S + ++ D F + TV + + ++ L I DT+G ++ +
Sbjct: 35 KTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRG 94
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDV-----RREIA 176
A F+L+Y + + ++ V+D QI +++VGNKC+LE + V R +A
Sbjct: 95 AMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLA 154
Query: 177 ETIALYDWQCGFVECSAKENYNIVQVFKELL 207
+ + F E SAKEN N+ QVF+ L+
Sbjct: 155 DDLGF-----EFFEASAKENINVKQVFERLV 180
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 10/155 (6%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS ++ +F D + Y T+ + DG + L I DT+G +F +
Sbjct: 38 KSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRG 97
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDV-----RREIA 176
A ++VY V D +++ VK ++I V ++VGNKC+L K V +E A
Sbjct: 98 AHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFA 157
Query: 177 ETIALYDWQCGFVECSAKENYNIVQVFKELLAQAK 211
+++ + F+E SAK N+ Q F + A+ K
Sbjct: 158 DSLGI-----PFLETSAKNATNVEQSFMTMAAEIK 187
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 10/155 (6%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS ++ +F D + Y T+ + DG + L I DT+G +F +
Sbjct: 12 KSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRG 71
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDV-----RREIA 176
A ++VY V D +++ VK ++I V ++VGNKC+L K V +E A
Sbjct: 72 AHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFA 131
Query: 177 ETIALYDWQCGFVECSAKENYNIVQVFKELLAQAK 211
+++ + F+E SAK N+ Q F + A+ K
Sbjct: 132 DSLGI-----PFLETSAKNATNVEQSFMTMAAEIK 161
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 10/155 (6%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS ++ +F D + Y T+ + DG + L I DT+G +F +
Sbjct: 19 KSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRG 78
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDV-----RREIA 176
A ++VY V D +++ VK ++I V ++VGNKC+L K V +E A
Sbjct: 79 AHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFA 138
Query: 177 ETIALYDWQCGFVECSAKENYNIVQVFKELLAQAK 211
+++ + F+E SAK N+ Q F + A+ K
Sbjct: 139 DSLGI-----PFLETSAKNATNVEQSFMTMAAEIK 168
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 10/155 (6%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS ++ +F D + Y T+ + DG + L I DT+G +F +
Sbjct: 19 KSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRG 78
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDV-----RREIA 176
A ++VY V D +++ VK ++I V ++VGNKC+L K V +E A
Sbjct: 79 AHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFA 138
Query: 177 ETIALYDWQCGFVECSAKENYNIVQVFKELLAQAK 211
+++ + F+E SAK N+ Q F + A+ K
Sbjct: 139 DSLGI-----PFLETSAKNATNVEQSFMTMAAEIK 168
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 71/155 (45%), Gaps = 10/155 (6%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS ++ +F D + Y T+ + + + L I DT+G +F +
Sbjct: 22 KSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQERFRTITSSYYRG 81
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-----DVRREIA 176
A ++VY V D ++D VK ++I V ++VGNKC+L K D RE+A
Sbjct: 82 AHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVGNKCDLVSKRVVTSDEGRELA 141
Query: 177 ETIALYDWQCGFVECSAKENYNIVQVFKELLAQAK 211
++ + F+E SAK YN+ Q F + + K
Sbjct: 142 DSHGI-----KFIETSAKNAYNVEQAFHTMAGEIK 171
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 74/151 (49%), Gaps = 10/151 (6%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+S + ++ D F + TV + + + ++ L I DT+G ++ +
Sbjct: 18 KTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRG 77
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDV-----RREIA 176
A F+L+Y + + +++ V+D QI +++VGNKC++E + V R++A
Sbjct: 78 AMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLA 137
Query: 177 ETIALYDWQCGFVECSAKENYNIVQVFKELL 207
+ + F E SAK+N N+ Q F+ L+
Sbjct: 138 DHLGF-----EFFEASAKDNINVKQTFERLV 163
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 71/155 (45%), Gaps = 10/155 (6%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS ++ +F D + Y T+ + DG + L I DT+G +F +
Sbjct: 46 KSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRG 105
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDV-----RREIA 176
A ++VY V D +++ VK ++I V ++VGNKC+L K V +E A
Sbjct: 106 AHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFA 165
Query: 177 ETIALYDWQCGFVECSAKENYNIVQVFKELLAQAK 211
+++ + F+E SAK N+ Q F A+ K
Sbjct: 166 DSLGI-----PFLETSAKNATNVEQSFXTXAAEIK 195
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 73/148 (49%), Gaps = 3/148 (2%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+S++ +F D F K TV + + G ++ L I DT+G +F ++ +
Sbjct: 39 KTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRS 98
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNK--CELEFKDVRREIAETI 179
A +LVY + T+D + + I +++VGNK CE + +++ R+ E
Sbjct: 99 AKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETD-REITRQQGEKF 157
Query: 180 ALYDWQCGFVECSAKENYNIVQVFKELL 207
A F E SAK+N+N+ ++F +L+
Sbjct: 158 AQQITGMRFCEASAKDNFNVDEIFLKLV 185
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 72/151 (47%), Gaps = 10/151 (6%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+S + ++ D F + TV + + + ++ L I DT+G ++ +
Sbjct: 21 KTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRG 80
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDV-----RREIA 176
A F+L Y + + +++ V+D QI +++VGNKC+ E + V R++A
Sbjct: 81 AXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDXEDERVVSSERGRQLA 140
Query: 177 ETIALYDWQCGFVECSAKENYNIVQVFKELL 207
+ + F E SAK+N N+ Q F+ L+
Sbjct: 141 DHLGF-----EFFEASAKDNINVKQTFERLV 166
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 72/155 (46%), Gaps = 10/155 (6%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+ ++ +F D + Y T+ + DG + L I DT+G +F +
Sbjct: 29 KNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRG 88
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDV-----RREIA 176
A ++VY V D +++ VK ++I V ++VGNKC+L K V +E A
Sbjct: 89 AHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFA 148
Query: 177 ETIALYDWQCGFVECSAKENYNIVQVFKELLAQAK 211
+++ + F+E SAK N+ Q F + A+ K
Sbjct: 149 DSLGI-----PFLETSAKNATNVEQSFMTMAAEIK 178
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 68/125 (54%), Gaps = 9/125 (7%)
Query: 94 DGAQLTL---DILDTSGAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNK 150
DG + +L DI + G P ++ DA+V+VY+V D +++ +LR Q+
Sbjct: 50 DGEEASLMVYDIWEQDGGRWLPGH---CMAMGDAYVIVYSVTDKGSFEKASELRVQLRRA 106
Query: 151 RGL-MVPIVVVGNKCEL-EFKDVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLA 208
R VPI++VGNK +L ++V + A+ + C F+E SA ++N+ +F+ ++
Sbjct: 107 RQTDDVPIILVGNKSDLVRSREVSVDEGRACAVV-FDCKFIETSAALHHNVQALFEGVVR 165
Query: 209 QAKVQ 213
Q +++
Sbjct: 166 QIRLR 170
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 68/125 (54%), Gaps = 9/125 (7%)
Query: 94 DGAQLTL---DILDTSGAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNK 150
DG + +L DI + G P ++ DA+V+VY+V D +++ +LR Q+
Sbjct: 50 DGEEASLMVYDIWEQDGGRWLPGH---CMAMGDAYVIVYSVTDKGSFEKASELRVQLRRA 106
Query: 151 RGL-MVPIVVVGNKCEL-EFKDVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLA 208
R VPI++VGNK +L ++V + A+ + C F+E SA ++N+ +F+ ++
Sbjct: 107 RQTDDVPIILVGNKSDLVRSREVSVDEGRACAVV-FDCKFIETSAALHHNVQALFEGVVR 165
Query: 209 QAKVQ 213
Q +++
Sbjct: 166 QIRLR 170
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 83/161 (51%), Gaps = 8/161 (4%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQL-TLDILDTSGAYQFPAMRELSIS 120
K+S++ +++ D++ +YK T+ + DG ++ T+ + DT+G +F ++
Sbjct: 21 KTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYR 80
Query: 121 TADAFVLVYAVDDASTWDVVKDLREQIVNKRGL----MVPIVVVGNKCELE--FKDVRRE 174
AD VLVY V +AS+++ +K R++ + + P V++GNK + E K V +
Sbjct: 81 GADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEK 140
Query: 175 IAETIALYDWQCGFVECSAKENYNIVQVFKELLAQAKVQYN 215
A+ +A SAK N+ F+E +A++ +Q N
Sbjct: 141 SAQELAKSLGDIPLFLTSAKNAINVDTAFEE-IARSALQQN 180
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 76/147 (51%), Gaps = 4/147 (2%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KSS++ +F+ D+F+ + T+ + + A + +I DT+G ++ ++ +
Sbjct: 25 KSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 84
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIAL 181
A A ++V+ V + ++++ K +++ + + + + GNK +L D R+ AE
Sbjct: 85 AAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDL--LDARKVTAEDAQT 142
Query: 182 YDWQCG--FVECSAKENYNIVQVFKEL 206
Y + G F+E SAK N+ ++F E+
Sbjct: 143 YAQENGLFFMETSAKTATNVKEIFYEI 169
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 73/160 (45%), Gaps = 22/160 (13%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+ ++ F D F Y TV E + + E+ DG Q+ L + DT+G + +R LS
Sbjct: 38 KTCLLIVFSKDEFPEVYVPTVFENYVADIEV-DGKQVELALWDTAGQEDYDRLRPLSYPD 96
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKD-VRREIAET-- 178
D ++ ++VD + + + + V VPI++V NK +L + VR E+A
Sbjct: 97 TDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQ 156
Query: 179 --------------IALYDWQCGFVECSAKENYNIVQVFK 204
I YD ++ECSAK + +VF+
Sbjct: 157 EPVRTDDGRAMAVRIQAYD----YLECSAKTKEGVREVFE 192
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 68/125 (54%), Gaps = 9/125 (7%)
Query: 94 DGAQLTL---DILDTSGAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNK 150
DG + +L DI + G P ++ DA+V+VY+V D +++ +LR Q+
Sbjct: 45 DGEEASLMVYDIWEQDGGRWLPGH---CMAMGDAYVIVYSVTDKGSFEKASELRVQLRRA 101
Query: 151 RGL-MVPIVVVGNKCEL-EFKDVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLA 208
R VPI++VGNK +L ++V + A+ + C F+E SA ++N+ +F+ ++
Sbjct: 102 RQTDDVPIILVGNKSDLVRSREVSVDEGRACAVV-FDCKFIETSAALHHNVQALFEGVVR 160
Query: 209 QAKVQ 213
Q +++
Sbjct: 161 QIRLR 165
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 73/137 (53%), Gaps = 8/137 (5%)
Query: 92 LPDGAQLT---LDILDTSGAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIV 148
+ DG T LD+ + G ++ + + + DA+++VY++ D ++++ +LR Q+
Sbjct: 50 MVDGESATIILLDMWENKGENEW--LHDHXMQVGDAYLIVYSITDRASFEKASELRIQLR 107
Query: 149 NKRGLM-VPIVVVGNKCEL-EFKDVRREIAETIALYDWQCGFVECSAKENYNIVQVFKEL 206
R +PI++VGNK +L ++V A+ + C F+E SA +N+ ++F+ +
Sbjct: 108 RARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVV-FDCKFIETSAAVQHNVKELFEGI 166
Query: 207 LAQAKVQYNLSPAVRRR 223
+ Q +++ + RR
Sbjct: 167 VRQVRLRRDSKEKNERR 183
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 88/197 (44%), Gaps = 21/197 (10%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS ++ +F D + + Y T+ + + DG + L I DT+G +F +
Sbjct: 21 KSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRG 80
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-----DVRREIA 176
+ ++VY V D +++ VK ++I V ++VGNKC+L+ K DV +E A
Sbjct: 81 SHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFA 140
Query: 177 ETIALYDWQCGFVECSAKENYNIVQVFKELLAQAK---VQYNLSPAVRRRRQSLPNYIGT 233
+ + F+E SA ++ N+ F + Q K Q NL+ +++
Sbjct: 141 DANKM-----PFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQKKEDK------- 188
Query: 234 TGSASSKGRYMLKRNSC 250
G+ + KG+ + C
Sbjct: 189 -GNVNLKGQSLTNTGGC 204
>pdb|3IZY|P Chain P, Mammalian Mitochondrial Translation Initiation Factor 2
Length = 537
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 48/103 (46%), Gaps = 9/103 (8%)
Query: 86 HRGEY--ELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDL 143
H G + LP G ++T LDT G F AMR D +LV A DD V+K
Sbjct: 40 HIGAFLVSLPSGEKITF--LDTPGHAAFSAMRARGTQVTDIVILVVAADDG----VMKQT 93
Query: 144 REQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIALYDWQC 186
E I + + VPIV+ NKC+ D + E +A YD C
Sbjct: 94 VESIQHAKDAHVPIVLAINKCDKAEADPEKVKKELLA-YDVVC 135
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 80/148 (54%), Gaps = 7/148 (4%)
Query: 62 KSSIISQFLYDRFISRYKET--VEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSI 119
KSS+I ++ F YK+T V+ L R + ++ D + L + DT+G +F A+ +
Sbjct: 18 KSSMIQRYCKGIFTKDYKKTIGVDFLER-QIQVND-EDVRLMLWDTAGQEEFDAITKAYY 75
Query: 120 STADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCE-LEFKDVRREIAET 178
A A VLV++ D +++ + RE++V + G +P +V NK + L+ ++ E AE
Sbjct: 76 RGAQACVLVFSTTDRESFEAISSWREKVVAEVG-DIPTALVQNKIDLLDDSCIKNEEAEG 134
Query: 179 IALYDWQCGFVECSAKENYNIVQVFKEL 206
+A + F S KE+ N+ +VFK L
Sbjct: 135 LA-KRLKLRFYRTSVKEDLNVSEVFKYL 161
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 71/148 (47%), Gaps = 4/148 (2%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+S + ++ D F + TV + + ++ L I DT+G ++ +
Sbjct: 36 KTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRG 95
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIAL 181
A F+L+Y + + +++ V+D QI +++VGNKC++E + R E L
Sbjct: 96 AMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDME--EERVVPTEKGQL 153
Query: 182 YDWQCG--FVECSAKENYNIVQVFKELL 207
Q G F E SAKEN ++ Q F+ L+
Sbjct: 154 LAEQLGFDFFEASAKENISVRQAFERLV 181
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 83/156 (53%), Gaps = 10/156 (6%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS++ +FL RFIS Y +E+ + E E D + L ++DT+ P E ++
Sbjct: 34 KSALTVKFLTKRFISEYDPNLEDTYSSE-ETVDHQPVHLRVMDTAD-LDTPRNCERYLNW 91
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQI---VNKRGLMVPIVVVGNKCEL-EFKDVRREIAE 177
A AF++VY+VD ++D E + + +P +++GNK ++ +++ V + AE
Sbjct: 92 AHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTK--AE 149
Query: 178 TIALYD-WQCGFVECSAKENYNIVQ-VFKELLAQAK 211
+AL + C F E SA ++ VQ VF E + +A+
Sbjct: 150 GVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREAR 185
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 85/188 (45%), Gaps = 22/188 (11%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS ++ +F D + + Y T+ + + DG + L I DT+G +F +
Sbjct: 21 KSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRG 80
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-----DVRREIA 176
+ ++VY V D +++ VK ++I V ++VGNKC+L+ K DV +E A
Sbjct: 81 SHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFA 140
Query: 177 ETIALYDWQCGFVECSAKENYNIVQVFKELLAQAK---VQYNLSPAVRRRR--------- 224
+ + F+E SA ++ N+ F + Q K Q NL+ +++
Sbjct: 141 DANKM-----PFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQKKEDKGNVNLKG 195
Query: 225 QSLPNYIG 232
QSL N G
Sbjct: 196 QSLTNTGG 203
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 76/156 (48%), Gaps = 3/156 (1%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS ++ +F+ D+F + T+ + + +G ++ L + DT+G +F +
Sbjct: 33 KSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRG 92
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIAL 181
A +LVY V D T+ +K + + +++VGNK ++E + V + E +A
Sbjct: 93 AMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALA- 151
Query: 182 YDWQCGFVECSAKENYNIVQVFKEL--LAQAKVQYN 215
+ F+E SAK + N+ ++F L L Q K+ N
Sbjct: 152 KELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDSN 187
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 76/156 (48%), Gaps = 3/156 (1%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS ++ +F+ D+F + T+ + + +G ++ L I DT+G +F +
Sbjct: 16 KSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRG 75
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIAL 181
A +LVY + D T+ +K + + +++VGNK ++E + V + E +A
Sbjct: 76 AMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALA- 134
Query: 182 YDWQCGFVECSAKENYNIVQVFKEL--LAQAKVQYN 215
+ F+E SAK + N+ ++F L L Q K+ N
Sbjct: 135 KELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDSN 170
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 76/156 (48%), Gaps = 3/156 (1%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS ++ +F+ D+F + T+ + + +G ++ L + DT+G +F +
Sbjct: 20 KSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRG 79
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIAL 181
A +LVY V D T+ +K + + +++VGNK ++E + V + E +A
Sbjct: 80 AMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALA- 138
Query: 182 YDWQCGFVECSAKENYNIVQVFKEL--LAQAKVQYN 215
+ F+E SAK + N+ ++F L L Q K+ N
Sbjct: 139 KELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDSN 174
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 62/115 (53%), Gaps = 5/115 (4%)
Query: 94 DGAQLTLDILDTSGAYQFPAM--RELSISTADAFVLVYAVDDASTWDVVKDLREQIV-NK 150
DG TL ++DT A + +E + A+V+VY++ D +++ +LR Q+
Sbjct: 48 DGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTH 107
Query: 151 RGLMVPIVVVGNKCEL-EFKDVRREIAETIALYDWQCGFVECSAKENYNIVQVFK 204
+ VPI++VGNK +L ++V E A+ + C F+E SA +N+ ++F+
Sbjct: 108 QADHVPIILVGNKADLARCREVSVEEGRACAVV-FDCKFIETSATLQHNVAELFE 161
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 71/155 (45%), Gaps = 10/155 (6%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS ++ +F D + Y T+ + DG + L I DT+G +F +
Sbjct: 21 KSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRG 80
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDV-----RREIA 176
A ++VY V D +++ VK ++I V ++VG KC+L K V +E A
Sbjct: 81 AHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGIKCDLTTKKVVDYTTAKEFA 140
Query: 177 ETIALYDWQCGFVECSAKENYNIVQVFKELLAQAK 211
+++ + F+E SAK N+ Q F + A+ K
Sbjct: 141 DSLGI-----PFLETSAKNATNVEQSFMTMAAEIK 170
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 75/156 (48%), Gaps = 3/156 (1%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS ++ +F+ D+F + T+ + + +G ++ L I DT+G +F +
Sbjct: 16 KSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRG 75
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIAL 181
A +LVY + D T+ +K + + +++VGNK + E + V + E +A
Sbjct: 76 AXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDXETRVVTADQGEALA- 134
Query: 182 YDWQCGFVECSAKENYNIVQVFKEL--LAQAKVQYN 215
+ F+E SAK + N+ ++F L L Q K+ N
Sbjct: 135 KELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDSN 170
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 70/157 (44%), Gaps = 14/157 (8%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+S++ F F Y TV E + ++ G + L I DT+G + +R L
Sbjct: 47 KTSLLMVFADGAFPESYTPTVFERYMVNLQV-KGKPVHLHIWDTAGQDDYDRLRPLFYPD 105
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELE-----FKDVRREIA 176
A +L + V +++D + + VN VPI+VVG K +L +RR
Sbjct: 106 ASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGL 165
Query: 177 ETIALYDWQ--------CGFVECSAKENYNIVQVFKE 205
E + + Q ++ECSA+ + N+ VF+E
Sbjct: 166 EPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQE 202
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 75/156 (48%), Gaps = 3/156 (1%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS ++ +F+ D+F + T+ + + +G ++ L + DT+G +F +
Sbjct: 16 KSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRG 75
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIAL 181
A +LVY V D T+ +K + + +++VGNK + E + V + E +A
Sbjct: 76 AXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDXETRVVTADQGEALA- 134
Query: 182 YDWQCGFVECSAKENYNIVQVFKEL--LAQAKVQYN 215
+ F+E SAK + N+ ++F L L Q K+ N
Sbjct: 135 KELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDSN 170
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 10/155 (6%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS ++ +F D + Y T+ + DG + L I DT+G +F +
Sbjct: 22 KSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRG 81
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDV-----RREIA 176
A ++VY V D ++ VK ++I V ++VGNK +L K V +E A
Sbjct: 82 AHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFA 141
Query: 177 ETIALYDWQCGFVECSAKENYNIVQVFKELLAQAK 211
+++ + F+E SAK N+ Q F + A+ K
Sbjct: 142 DSLGI-----PFLETSAKNATNVEQAFMTMAAEIK 171
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 70/127 (55%), Gaps = 8/127 (6%)
Query: 92 LPDGAQLT---LDILDTSGAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIV 148
+ DG T LD+ + G ++ + + + DA+++VY++ D ++++ +LR Q+
Sbjct: 81 MVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLR 138
Query: 149 NKRGLM-VPIVVVGNKCEL-EFKDVRREIAETIALYDWQCGFVECSAKENYNIVQVFKEL 206
R +PI++VGNK +L ++V A+ + C F+E SA +N+ ++F+ +
Sbjct: 139 RARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVV-FDCKFIETSAAVQHNVKELFEGI 197
Query: 207 LAQAKVQ 213
+ Q +++
Sbjct: 198 VRQVRLR 204
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 72/160 (45%), Gaps = 10/160 (6%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS ++ +F D + Y T+ + DG + L I DT+G +F +
Sbjct: 22 KSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRG 81
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDV-----RREIA 176
A ++VY V D ++ VK ++I V ++VGNK +L K V +E A
Sbjct: 82 AHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFA 141
Query: 177 ETIALYDWQCGFVECSAKENYNIVQVFKELLAQAKVQYNL 216
+++ + F+E SAK N+ Q F + A+ K + L
Sbjct: 142 DSLGI-----PFLETSAKNATNVEQAFMTMAAEIKKRMGL 176
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 14/162 (8%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+ ++ + ++F S Y TV + + + G TL + DT+G + +R LS
Sbjct: 16 KTCLLISYTTNKFPSEYVPTVFDNYAVTVXI-GGEPYTLGLFDTAGQEDYDRLRPLSYPQ 74
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCEL-------------EF 168
D F++ ++V S+++ VK+ + P ++VG + +L +
Sbjct: 75 TDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQ 134
Query: 169 KDVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQA 210
K + E AE +A +VECSA + VF E + A
Sbjct: 135 KPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 176
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 70/127 (55%), Gaps = 8/127 (6%)
Query: 92 LPDGAQLT---LDILDTSGAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIV 148
+ DG T LD+ + G ++ + + + DA+++VY++ D ++++ +LR Q+
Sbjct: 50 MVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLR 107
Query: 149 NKRGLM-VPIVVVGNKCEL-EFKDVRREIAETIALYDWQCGFVECSAKENYNIVQVFKEL 206
R +PI++VGNK +L ++V A+ + C F+E SA +N+ ++F+ +
Sbjct: 108 RARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVV-FDCKFIETSAAVQHNVKELFEGI 166
Query: 207 LAQAKVQ 213
+ Q +++
Sbjct: 167 VRQVRLR 173
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 14/162 (8%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+ ++ + ++F S Y TV + + + G TL + DT+G + +R LS
Sbjct: 19 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMI-GGEPYTLGLFDTAGQEDYDRLRPLSYPQ 77
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCEL-------------EF 168
D F++ ++V S+++ VK+ + P ++VG + +L +
Sbjct: 78 TDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQ 137
Query: 169 KDVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQA 210
K + E AE +A +VECSA + VF E + A
Sbjct: 138 KPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 179
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 14/162 (8%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+ ++ + ++F S Y TV + + + G TL + DT+G + +R LS
Sbjct: 19 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMI-GGEPYTLGLFDTAGQEDYDRLRPLSYPQ 77
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCEL-------------EF 168
D F++ ++V S+++ VK+ + P ++VG + +L +
Sbjct: 78 TDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQ 137
Query: 169 KDVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQA 210
K + E AE +A +VECSA + VF E + A
Sbjct: 138 KPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 179
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 14/162 (8%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+ ++ + ++F S Y TV + + + G TL + DT+G + +R LS
Sbjct: 16 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMI-GGEPYTLGLFDTAGQEDYDRLRPLSYPQ 74
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCEL-------------EF 168
D F++ ++V S+++ VK+ + P ++VG + +L +
Sbjct: 75 TDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQ 134
Query: 169 KDVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQA 210
K + E AE +A +VECSA + VF E + A
Sbjct: 135 KPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 176
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 14/162 (8%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+ ++ + ++F S Y TV + + + G TL + DT+G + +R LS
Sbjct: 18 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMI-GGEPYTLGLFDTAGQEDYDRLRPLSYPQ 76
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCEL-------------EF 168
D F++ ++V S+++ VK+ + P ++VG + +L +
Sbjct: 77 TDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQ 136
Query: 169 KDVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQA 210
K + E AE +A +VECSA + VF E + A
Sbjct: 137 KPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 178
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 14/162 (8%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+ ++ + ++F S Y TV + + + G TL + DT+G + +R LS
Sbjct: 23 KNCLLISYTTNKFPSEYVPTVFDNYAVTVMI-GGEPYTLGLFDTAGQEDYDRLRPLSYPQ 81
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCEL-------------EF 168
D F++ ++V S+++ VK+ + P ++VG + +L +
Sbjct: 82 TDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQ 141
Query: 169 KDVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQA 210
K + E AE +A +VECSA + VF E + A
Sbjct: 142 KPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 183
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 14/162 (8%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+ ++ + ++F S Y TV + + + G TL + DT+G + +R LS
Sbjct: 16 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMI-GGEPYTLGLFDTAGQEDYDRLRPLSYPQ 74
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCEL-------------EF 168
D F++ ++V S+++ VK+ + P ++VG + +L +
Sbjct: 75 TDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQ 134
Query: 169 KDVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQA 210
K + E AE +A +VECSA + VF E + A
Sbjct: 135 KPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 176
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 92/204 (45%), Gaps = 35/204 (17%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+ ++ + ++F + Y TV + + DG + L + DT+G + +R LS
Sbjct: 22 KTCMLICYTSNKFPTDYIPTVFDNFSANVAV-DGQIVNLGLWDTAGQEDYSRLRPLSYRG 80
Query: 122 ADAFVLVYA-VDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIA 180
AD FVL ++ + AS +V+K ++ + VPIV+VG K L+ +D + +A+
Sbjct: 81 ADIFVLAFSLISKASYENVLKKWMPEL-RRFAPNVPIVLVGTK--LDLRDDKGYLADHTN 137
Query: 181 LYDWQCG-----------FVECSAKENYNIVQVFKELLAQAKVQYNLSPAVRRRRQSLPN 229
+ G ++ECS+K N+ VF ++ L P RR+ +P
Sbjct: 138 VITSTQGEELRKQIGAAAYIECSSKTQQNVKAVF-----DTAIKVVLQPP---RRKEVP- 188
Query: 230 YIGTTGSASSKGRYMLKRNSCTVA 253
+ R +R+ C++A
Sbjct: 189 ----------RRRKNHRRSGCSIA 202
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 14/162 (8%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+ ++ + ++F S Y TV + + + G TL + DT+G + +R LS
Sbjct: 23 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMI-GGEPYTLGLFDTAGQEDYDRLRPLSYPQ 81
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCEL-------------EF 168
D F++ ++V S+++ VK+ + P ++VG + +L +
Sbjct: 82 TDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQ 141
Query: 169 KDVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQA 210
K + E AE +A +VECSA + VF E + A
Sbjct: 142 KPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 183
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 14/162 (8%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+ ++ + ++F S Y TV + + + G TL + DT+G + +R LS
Sbjct: 16 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMI-GGEPYTLGLFDTAGQEDYDRLRPLSYPQ 74
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCEL-------------EF 168
D F++ ++V S+++ VK+ + P ++VG + +L +
Sbjct: 75 TDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQ 134
Query: 169 KDVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQA 210
K + E AE +A +VECSA + VF E + A
Sbjct: 135 KPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 176
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 14/162 (8%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+ ++ + ++F S Y TV + + + G TL + DT+G + +R LS
Sbjct: 17 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMI-GGEPYTLGLFDTAGQEDYDRLRPLSYPQ 75
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCEL-------------EF 168
D F++ ++V S+++ VK+ + P ++VG + +L +
Sbjct: 76 TDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQ 135
Query: 169 KDVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQA 210
K + E AE +A +VECSA + VF E + A
Sbjct: 136 KPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 177
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 14/162 (8%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+ ++ + ++F S Y TV + + + G TL + DT+G + +R LS
Sbjct: 20 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMI-GGEPYTLGLFDTAGLEDYDRLRPLSYPQ 78
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCEL-------------EF 168
D F++ ++V S+++ VK+ + P ++VG + +L +
Sbjct: 79 TDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQ 138
Query: 169 KDVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQA 210
K + E AE +A +VECSA + VF E + A
Sbjct: 139 KPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 180
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 14/162 (8%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+ ++ + ++F S Y TV + + + G TL + DT+G + +R LS
Sbjct: 26 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMI-GGEPYTLGLFDTAGQEDYDRLRPLSYPQ 84
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCEL-------------EF 168
D F++ ++V S+++ VK+ + P ++VG + +L +
Sbjct: 85 TDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQ 144
Query: 169 KDVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQA 210
K + E AE +A +VECSA + VF E + A
Sbjct: 145 KPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 186
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 14/162 (8%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+ ++ + ++F S Y TV + + + G TL + DT+G + +R LS
Sbjct: 16 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMI-GGEPYTLGLFDTAGQEDYDRLRPLSYPQ 74
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCEL-------------EF 168
D F++ ++V S+++ VK+ + P ++VG + +L +
Sbjct: 75 TDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQ 134
Query: 169 KDVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQA 210
K + E AE +A +VECSA + VF E + A
Sbjct: 135 KPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 176
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 14/162 (8%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+ ++ + ++F S Y TV + + + G TL + DT+G + +R LS
Sbjct: 16 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMI-GGEPYTLGLFDTAGLEDYDRLRPLSYPQ 74
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCEL-------------EF 168
D F++ ++V S+++ VK+ + P ++VG + +L +
Sbjct: 75 TDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQ 134
Query: 169 KDVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQA 210
K + E AE +A +VECSA + VF E + A
Sbjct: 135 KPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 176
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 82/165 (49%), Gaps = 11/165 (6%)
Query: 62 KSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIS 120
K++ + + L F +Y T+ E+H + G ++ D+ DT+G +F +R+
Sbjct: 25 KTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFG-EIKFDVWDTAGLEKFGGLRDGYYI 83
Query: 121 TADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIA 180
A ++++ V T+ V + +V + +PIV+ GNK +++ + V+ A+TI
Sbjct: 84 NAQCAIIMFDVTSRITYKNVPNWHRDLV-RVCENIPIVLCGNKVDVKERKVK---AKTIT 139
Query: 181 LY-DWQCGFVECSAKENYNIVQVF----KELLAQAKVQYNLSPAV 220
+ + + SAK NYN + F ++L ++++ SPA+
Sbjct: 140 FHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQLEFVASPAL 184
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 65/143 (45%), Gaps = 2/143 (1%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS ++ QF RF + T+ DG Q+ L I DT+G F ++
Sbjct: 34 KSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRG 93
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEF-KDVRREIAETIA 180
A +LVY + T++ + E + I+++GNK +LE +DV+RE E A
Sbjct: 94 AAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFA 153
Query: 181 LYDWQCGFVECSAKENYNIVQVF 203
+ F+E SAK N+ + F
Sbjct: 154 -REHGLIFMETSAKTACNVEEAF 175
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 81/169 (47%), Gaps = 8/169 (4%)
Query: 62 KSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIS 120
KS+++S+F D F K T+ E +L + + I DT+G ++ A+
Sbjct: 20 KSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAGQERYRAITSAYYR 79
Query: 121 TADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIA 180
A +LVY + ++++ ++ +++ + + I++VGNK +L+ V + T
Sbjct: 80 GAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVGNKSDLKHLRVINDNDATQY 139
Query: 181 LYDWQCGFVECSAKENYNIVQVFKELLAQAKVQYNLSPAVRRRRQSLPN 229
+ F+E SA E N+ F +LL + YN VR+++Q+ N
Sbjct: 140 AKKEKLAFIETSALEATNVELAFHQLLNEI---YN----VRQKKQATKN 181
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 14/162 (8%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+ ++ + ++F S Y TV + + + G TL + DT+G + +R LS
Sbjct: 20 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMI-GGEPYTLGLFDTAGQEDYDRLRPLSYPQ 78
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCEL-------------EF 168
D F++ ++V S+++ VK+ + P ++VG + +L +
Sbjct: 79 TDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQ 138
Query: 169 KDVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQA 210
K + E AE +A +VECSA + VF E + A
Sbjct: 139 KPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 180
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 14/162 (8%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+ ++ + ++F S Y TV + + + G TL + DT+G + +R LS
Sbjct: 16 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMI-GGEPYTLGLFDTAGQEDYDRLRPLSYPQ 74
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCEL-------------EF 168
D F++ ++V S+++ VK+ + P ++VG + +L +
Sbjct: 75 TDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQ 134
Query: 169 KDVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQA 210
K + E AE +A +VECSA + VF E + A
Sbjct: 135 KPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 176
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 14/162 (8%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+ ++ + ++F S Y TV + + + G TL + DT+G + +R LS
Sbjct: 18 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMI-GGEPYTLGLFDTAGQEDYDRLRPLSYPQ 76
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCEL-------------EF 168
D F++ ++V S+++ VK+ + P ++VG + +L +
Sbjct: 77 TDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQ 136
Query: 169 KDVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQA 210
K + E AE +A +VECSA + VF E + A
Sbjct: 137 KPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 178
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 14/162 (8%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+ ++ + ++F S Y TV + + + G TL + DT+G + +R LS
Sbjct: 16 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMI-GGEPYTLGLFDTAGQEDYDRLRPLSYPQ 74
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCEL-------------EF 168
D F++ ++V S+++ VK+ + P ++VG + +L +
Sbjct: 75 TDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQ 134
Query: 169 KDVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQA 210
K + E AE +A +VECSA + VF E + A
Sbjct: 135 KPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAILAA 176
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 14/162 (8%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+ ++ + ++F S Y TV + + + G TL + DT+G + +R LS
Sbjct: 16 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMI-GGEPYTLGLFDTAGQEDYDRLRPLSYPQ 74
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCEL-------------EF 168
D F++ ++V S+++ VK+ + P ++VG + +L +
Sbjct: 75 TDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQ 134
Query: 169 KDVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQA 210
K + E AE +A +VECSA + VF E + A
Sbjct: 135 KPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 176
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 14/162 (8%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+ ++ + ++F S Y TV + + + G TL + DT+G + +R LS
Sbjct: 16 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMI-GGEPYTLGLFDTAGQEDYDRLRPLSYPQ 74
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCEL-------------EF 168
D F++ ++V S+++ VK+ + P ++VG + +L +
Sbjct: 75 TDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQ 134
Query: 169 KDVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQA 210
K + E AE +A +VECSA + VF E + A
Sbjct: 135 KPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAILAA 176
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 77/142 (54%), Gaps = 18/142 (12%)
Query: 92 LPDGAQLT---LDILDTSGAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIV 148
+ DG T LD+ + G ++ + + + DA+++VY++ D ++++ +LR Q+
Sbjct: 50 MVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLR 107
Query: 149 NKRGLM-VPIVVVGNKCELEFKDVR-REIAET-----IALYDWQCGFVECSAKENYNIVQ 201
R +PI++VGNK +L VR RE++ + ++D + F+E SA +N+ +
Sbjct: 108 RARQTEDIPIILVGNKSDL----VRXREVSVSEGRAXAVVFDXK--FIETSAAVQHNVKE 161
Query: 202 VFKELLAQAKVQYNLSPAVRRR 223
+F+ ++ Q +++ + RR
Sbjct: 162 LFEGIVRQVRLRRDSKEKNERR 183
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 73/155 (47%), Gaps = 10/155 (6%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS ++ +F D + + Y T+ + + DG + L I DT+G +F +
Sbjct: 34 KSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRG 93
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-----DVRREIA 176
+ ++VY V D +++ VK ++I V ++VGNKC+L+ K DV +E A
Sbjct: 94 SHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFA 153
Query: 177 ETIALYDWQCGFVECSAKENYNIVQVFKELLAQAK 211
+ + F+E SA ++ N+ F + Q K
Sbjct: 154 DANKM-----PFLETSALDSTNVEDAFLTMARQIK 183
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 75/167 (44%), Gaps = 15/167 (8%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+S++ + + + + Y T + + DG + L + DT+G +F +R L +
Sbjct: 33 KTSLVVSYTTNGYPTEYIPTAFDNFSAVVSV-DGRPVRLQLCDTAGQDEFDKLRPLCYTN 91
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCEL-------------EF 168
D F+L ++V S++ V + + PI++VG + +L +
Sbjct: 92 TDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKE 151
Query: 169 KDVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQAKVQYN 215
K V E A+ +A ++ECSA N+ +VF + A +QY+
Sbjct: 152 KPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIV-AGIQYS 197
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 75/147 (51%), Gaps = 4/147 (2%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+S++ ++ ++F ++ T++ + G ++ L I DT+G +F A+ +
Sbjct: 33 KTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRD 92
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIAL 181
++ +LVY + D ++ VK+ +++ G + + +VGNK +LE K+ I E +
Sbjct: 93 SNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE-KERHVSIQEAES- 150
Query: 182 YDWQCG--FVECSAKENYNIVQVFKEL 206
Y G SAK+N I ++F +L
Sbjct: 151 YAESVGAKHYHTSAKQNKGIEELFLDL 177
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 74/159 (46%), Gaps = 10/159 (6%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS ++ QF +F++ T+ G ++ L I DT+G +F A+
Sbjct: 43 KSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQGRFRAVTRSYYRG 102
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVP---IVVVGNKCELEF-KDVRREIAE 177
A ++VY + ST++ L + + R L P I+++GNK +LE +DV E A+
Sbjct: 103 AAGALMVYDITRRSTYN---HLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAK 159
Query: 178 TIALYDWQCGFVECSAKENYNIVQVFKELLAQAKVQYNL 216
A + F+E SAK N+ F E A K+ N+
Sbjct: 160 QFAEENGLL-FLEASAKTGENVEDAFLE--AAKKIYQNI 195
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 14/162 (8%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+ ++ + ++F S Y TV + + + G TL + DT+G + +R LS
Sbjct: 16 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMI-GGEPYTLGLRDTAGQEDYDRLRPLSYPQ 74
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCEL-------------EF 168
D F++ ++V S+++ VK+ + P ++VG + +L +
Sbjct: 75 TDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQ 134
Query: 169 KDVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQA 210
K + E AE +A +VECSA + VF E + A
Sbjct: 135 KPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 176
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 71/164 (43%), Gaps = 38/164 (23%)
Query: 62 KSSIISQFLYDRFISRYKETV------------EELHRGEYELPDGAQLTLDILDTSGAY 109
KSSI+ +F+ D F T+ ELH+ I DT+G
Sbjct: 18 KSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHK------------FLIWDTAGQE 65
Query: 110 QFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK 169
+F A+ + + A ++VY + T+ +K+ ++ + + + GNKC+L
Sbjct: 66 RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDL--T 123
Query: 170 DVR-------REIAETIALYDWQCGFVECSAKENYNIVQVFKEL 206
DVR ++ A++I FVE SAK NI ++F E+
Sbjct: 124 DVREVMERDAKDYADSI-----HAIFVETSAKNAININELFIEI 162
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 69/148 (46%), Gaps = 8/148 (5%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS ++ QF +F++ T+ G ++ L I DT+G +F A+
Sbjct: 28 KSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRG 87
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVP---IVVVGNKCELEF-KDVRREIAE 177
A ++VY + ST++ L + + R L P I+++GNK +LE +DV E A+
Sbjct: 88 AAGALMVYDITRRSTYN---HLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAK 144
Query: 178 TIALYDWQCGFVECSAKENYNIVQVFKE 205
A + F+E SAK N+ F E
Sbjct: 145 QFAEENGLL-FLEASAKTGENVEDAFLE 171
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 75/147 (51%), Gaps = 4/147 (2%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+S++ ++ ++F ++ T++ + G ++ L I DT+G +F A+ +
Sbjct: 19 KTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRD 78
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIAL 181
++ +LVY + D ++ VK+ +++ G + + +VGNK +LE K+ I E +
Sbjct: 79 SNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE-KERHVSIQEAES- 136
Query: 182 YDWQCG--FVECSAKENYNIVQVFKEL 206
Y G SAK+N I ++F +L
Sbjct: 137 YAESVGAKHYHTSAKQNKGIEELFLDL 163
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 71/145 (48%), Gaps = 14/145 (9%)
Query: 73 RFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLVYAVD 132
+F Y TV E + + E+ DG ++ L + DT+G + +R LS ++ ++ +++D
Sbjct: 34 QFPEVYVPTVFENYVADVEV-DGRRVELALWDTAGQEDYDRLRPLSYPDSNVVLICFSID 92
Query: 133 DASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELE-----FKDVRREIAETIALYDWQ-- 185
+ + V++ V VPI++VG K +L + +R+E + + + Q
Sbjct: 93 LPDSLENVQEKWIAEVLHFCQGVPIILVGCKVDLRNDPQTIEQLRQEGQQPVTSQEGQSV 152
Query: 186 ------CGFVECSAKENYNIVQVFK 204
G+ ECSAK Y + +VF+
Sbjct: 153 ADQIGATGYYECSAKTGYGVREVFE 177
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 71/164 (43%), Gaps = 38/164 (23%)
Query: 62 KSSIISQFLYDRFISRYKETV------------EELHRGEYELPDGAQLTLDILDTSGAY 109
KSSI+ +F+ D F T+ ELH+ I DT+G
Sbjct: 19 KSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHK------------FLIWDTAGLE 66
Query: 110 QFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK 169
+F A+ + + A ++VY + T+ +K+ ++ + + + GNKC+L
Sbjct: 67 RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDL--T 124
Query: 170 DVR-------REIAETIALYDWQCGFVECSAKENYNIVQVFKEL 206
DVR ++ A++I FVE SAK NI ++F E+
Sbjct: 125 DVREVMERDAKDYADSI-----HAIFVETSAKNAININELFIEI 163
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 70/162 (43%), Gaps = 14/162 (8%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+ ++ + ++F S Y V + + + G TL + DT+G + +R LS
Sbjct: 16 KTCLLISYTTNKFPSEYVPAVFDNYAVTVMI-GGEPYTLGLFDTAGQEDYDRLRPLSYPQ 74
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCEL-------------EF 168
D F++ ++V S+++ VK+ + P ++VG + +L +
Sbjct: 75 TDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQ 134
Query: 169 KDVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQA 210
K + E AE +A +VECSA + VF E + A
Sbjct: 135 KPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 176
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 69/159 (43%), Gaps = 14/159 (8%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+ ++ + D F Y TV + H G Q L + DT+G + +R LS
Sbjct: 31 KTCLLMSYANDAFPEEYVPTVFD-HYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPM 89
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCEL-------------EF 168
D F++ ++V + +++ VK+ + + VP +++G + +L +
Sbjct: 90 TDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKE 149
Query: 169 KDVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELL 207
K + E + +A C +VECSA + VF E +
Sbjct: 150 KPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAI 188
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 70/162 (43%), Gaps = 14/162 (8%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+ ++ + ++ S Y TV + + + G TL + DT+G + +R LS
Sbjct: 16 KTCLLISYTTNKLPSEYVPTVFDNYAVTVMI-GGEPYTLGLFDTAGQEDYDRLRPLSYPQ 74
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCEL-------------EF 168
D F++ ++V S+++ VK+ + P ++VG + +L +
Sbjct: 75 TDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQ 134
Query: 169 KDVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQA 210
K + E AE +A +VECSA + VF E + A
Sbjct: 135 KPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 176
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 65/143 (45%), Gaps = 2/143 (1%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS ++ QF RF + T+ DG Q+ L I DT+G F ++
Sbjct: 23 KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRG 82
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEF-KDVRREIAETIA 180
A +LVY + T++ + E + I+++GNK +LE ++V++E E A
Sbjct: 83 AAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFA 142
Query: 181 LYDWQCGFVECSAKENYNIVQVF 203
+ F+E SAK N+ + F
Sbjct: 143 -REHGLIFMETSAKTASNVEEAF 164
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 73/156 (46%), Gaps = 16/156 (10%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLT-LDILDTSGAYQFPAMRELSIS 120
KSSI+ +F+ D F T+ + +P G +L I DT+G +F ++ +
Sbjct: 36 KSSIVCRFVQDHFDHNISPTIGASFMTK-TVPCGNELHKFLIWDTAGQERFHSLAPMYYR 94
Query: 121 TADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVR-------R 173
+ A V+VY + ++ +K +++ + + + GNKC+L D+R +
Sbjct: 95 GSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDL--SDIREVPLKDAK 152
Query: 174 EIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQ 209
E AE+I VE SAK NI ++F+ + Q
Sbjct: 153 EYAESIGAI-----VVETSAKNAINIEELFQGISRQ 183
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 72/157 (45%), Gaps = 8/157 (5%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KSS + + + F T+ + + + DG + L + DT+G +F ++ +
Sbjct: 41 KSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRK 100
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELE-------FKDVRRE 174
AD +L+Y V ++ +++ + I + VPI++VGNK ++ K V
Sbjct: 101 ADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGH 160
Query: 175 IAETIALYDWQCGFVECSAKENYNIVQVFKELLAQAK 211
E +A+ + F E SAK+ NIV+ L + K
Sbjct: 161 FGEKLAM-TYGALFCETSAKDGSNIVEAVLHLAREVK 196
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 74/147 (50%), Gaps = 4/147 (2%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+S++ ++ ++F ++ T+ + G ++ L I DT+G +F A+ +
Sbjct: 19 KTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRD 78
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIAL 181
++ +LVY + D ++ VK+ +++ G + + +VGNK +LE K+ I E +
Sbjct: 79 SNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE-KERHVSIQEAES- 136
Query: 182 YDWQCG--FVECSAKENYNIVQVFKEL 206
Y G SAK+N I ++F +L
Sbjct: 137 YAESVGAKHYHTSAKQNKGIEELFLDL 163
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 75/157 (47%), Gaps = 12/157 (7%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KSS++ +F + F Y T+ + +G ++ L I DT+G +F +
Sbjct: 22 KSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRG 81
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIAL 181
++VY V A ++ VK +I N+ V ++VGNK + D R++ ET
Sbjct: 82 THGVIVVYDVTSAESFVNVKRWLHEI-NQNCDDVCRILVGNKND----DPERKVVETEDA 136
Query: 182 YDW--QCG--FVECSAKENYNIVQVFK---ELLAQAK 211
Y + Q G E SAKEN N+ ++F EL+ +AK
Sbjct: 137 YKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAK 173
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 68/153 (44%), Gaps = 12/153 (7%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+ ++ + + F + Y TV + + +GA + L + DT+G + +R LS
Sbjct: 21 KTCLLISYTSNTFPTDYVPTVFDNFSANVVV-NGATVNLGLWDTAGQEDYNRLRPLSYRG 79
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELE-----FKDVRREI- 175
AD F+L +++ ++++ V + VPIV+VG K +L F D +
Sbjct: 80 ADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVP 139
Query: 176 -----AETIALYDWQCGFVECSAKENYNIVQVF 203
E + ++ECS+K N+ VF
Sbjct: 140 ITTVQGEELKKLIGAPAYIECSSKSQENVKGVF 172
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 71/144 (49%), Gaps = 7/144 (4%)
Query: 62 KSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIS 120
K++ + + L F +Y T+ E+H + G ++ D+ DT+G +F +R+
Sbjct: 18 KTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFG-EIKFDVWDTAGLEKFGGLRDGYYI 76
Query: 121 TADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIA 180
A ++++ V T+ V + +V + +PIV+ GNK +++ + V+ A+TI
Sbjct: 77 NAQCAIIMFDVTSRITYKNVPNWHRDLV-RVCENIPIVLCGNKVDVKERKVK---AKTIT 132
Query: 181 LY-DWQCGFVECSAKENYNIVQVF 203
+ + + SAK NYN + F
Sbjct: 133 FHRKKNLQYYDISAKSNYNFEKPF 156
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 71/144 (49%), Gaps = 7/144 (4%)
Query: 62 KSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIS 120
K++ + + L F +Y T+ E+H + G ++ D+ DT+G +F +R+
Sbjct: 17 KTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFG-EIKFDVWDTAGLEKFGGLRDGYYI 75
Query: 121 TADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIA 180
A ++++ V T+ V + +V + +PIV+ GNK +++ + V+ A+TI
Sbjct: 76 NAQCAIIMFDVTSRITYKNVPNWHRDLV-RVCENIPIVLCGNKVDVKERKVK---AKTIT 131
Query: 181 LY-DWQCGFVECSAKENYNIVQVF 203
+ + + SAK NYN + F
Sbjct: 132 FHRKKNLQYYDISAKSNYNFEKPF 155
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 59/111 (53%), Gaps = 3/111 (2%)
Query: 95 GAQLTLDILDTSGAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLM 154
G ++ L I DT+G +F + + +A+ +L Y + S++ V E + G
Sbjct: 75 GKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSN 134
Query: 155 VPIVVVGNKCEL-EFKDVRREIAETIA-LYDWQCGFVECSAKENYNIVQVF 203
+ +++GNK +L E ++V A+++A YD C +E SAK++ N+ + F
Sbjct: 135 IVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCA-IETSAKDSSNVEEAF 184
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 73/151 (48%), Gaps = 6/151 (3%)
Query: 69 FLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLV 128
FL FIS TV R + DG ++ L + DT+G +F ++ A A +L+
Sbjct: 35 FLAGTFIS----TVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLL 90
Query: 129 YAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEF-KDVRREIAETIALYDWQCG 187
Y V + +++D ++ +I V ++++GNK + + V+RE E +A ++
Sbjct: 91 YDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLA-KEYGLP 149
Query: 188 FVECSAKENYNIVQVFKELLAQAKVQYNLSP 218
F+E SAK N+ F + + K + +P
Sbjct: 150 FMETSAKTGLNVDLAFTAIAKELKRRSMKAP 180
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 80/165 (48%), Gaps = 11/165 (6%)
Query: 62 KSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIS 120
K++ + + L F +Y T+ E+H + G + ++ DT+G +F +R+
Sbjct: 23 KTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGP-IKFNVWDTAGQEKFGGLRDGYYI 81
Query: 121 TADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIA 180
A ++++ V T+ V + +V + +PIV+ GNK +++ + V+ A++I
Sbjct: 82 QAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKDRKVK---AKSIV 137
Query: 181 LY-DWQCGFVECSAKENYNIVQVF----KELLAQAKVQYNLSPAV 220
+ + + SAK NYN + F ++L+ +++ PA+
Sbjct: 138 FHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL 182
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 80/165 (48%), Gaps = 11/165 (6%)
Query: 62 KSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIS 120
K++ + + L F +Y T+ E+H + G + ++ DT+G +F +R+
Sbjct: 16 KTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGP-IKFNVWDTAGQEKFGGLRDGYYI 74
Query: 121 TADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIA 180
A ++++ V T+ V + +V + +PIV+ GNK +++ + V+ A++I
Sbjct: 75 QAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKDRKVK---AKSIV 130
Query: 181 LY-DWQCGFVECSAKENYNIVQVF----KELLAQAKVQYNLSPAV 220
+ + + SAK NYN + F ++L+ +++ PA+
Sbjct: 131 FHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL 175
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 80/165 (48%), Gaps = 11/165 (6%)
Query: 62 KSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIS 120
K++ + + L F +Y T+ E+H + G + ++ DT+G +F +R+
Sbjct: 28 KTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGP-IKFNVWDTAGQEKFGGLRDGYYI 86
Query: 121 TADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIA 180
A ++++ V T+ V + +V + +PIV+ GNK +++ + V+ A++I
Sbjct: 87 QAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKDRKVK---AKSIV 142
Query: 181 LY-DWQCGFVECSAKENYNIVQVF----KELLAQAKVQYNLSPAV 220
+ + + SAK NYN + F ++L+ +++ PA+
Sbjct: 143 FHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL 187
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 70/143 (48%), Gaps = 2/143 (1%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KSS++ +F+ +F + T++ + D + +I DT+G ++ ++ +
Sbjct: 18 KSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRG 77
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIA 180
A A ++VY + + T+ K+ +++ + + I + GNK +L K V + A+ A
Sbjct: 78 AQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYA 137
Query: 181 LYDWQCGFVECSAKENYNIVQVF 203
D F+E SAK N+ ++F
Sbjct: 138 -DDNSLLFMETSAKTAMNVNEIF 159
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 69/153 (45%), Gaps = 12/153 (7%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+ ++ + + F + Y TV + + DG+ + L + DT+G + +R LS
Sbjct: 19 KTCMLISYTGNTFPTDYVPTVFDNFSANVVV-DGSTVNLGLWDTAGQEDYNRLRPLSYRG 77
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELE-----FKDVRREIA 176
AD F+L +++ ++++ + + +PIV+VG K +L KD +
Sbjct: 78 ADVFLLAFSLISKASYENIHKKWLPELKHYAPGIPIVLVGTKLDLRDDKQFLKDHPGAAS 137
Query: 177 ETIALYD------WQCGFVECSAKENYNIVQVF 203
T A + ++ECS+K N+ VF
Sbjct: 138 ITTAQGEELRKMIGAVRYLECSSKTQQNVKAVF 170
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 80/165 (48%), Gaps = 11/165 (6%)
Query: 62 KSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIS 120
K++ + + L F +Y T+ E+H + G + ++ DT+G +F +R+
Sbjct: 23 KTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGP-IKFNVWDTAGQEKFGGLRDGYYI 81
Query: 121 TADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIA 180
A ++++ V T+ V + +V + +PIV+ GNK +++ + V+ A++I
Sbjct: 82 QAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKDRKVK---AKSIV 137
Query: 181 LY-DWQCGFVECSAKENYNIVQVF----KELLAQAKVQYNLSPAV 220
+ + + SAK NYN + F ++L+ +++ PA+
Sbjct: 138 FHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL 182
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 80/165 (48%), Gaps = 11/165 (6%)
Query: 62 KSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIS 120
K++ + + L F +Y T+ E+H + G + ++ DT+G +F +R+
Sbjct: 23 KTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGP-IKFNVWDTAGLEKFGGLRDGYYI 81
Query: 121 TADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIA 180
A ++++ V T+ V + +V + +PIV+ GNK +++ + V+ A++I
Sbjct: 82 QAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKDRKVK---AKSIV 137
Query: 181 LY-DWQCGFVECSAKENYNIVQVF----KELLAQAKVQYNLSPAV 220
+ + + SAK NYN + F ++L+ +++ PA+
Sbjct: 138 FHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL 182
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 76/179 (42%), Gaps = 17/179 (9%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+ ++ + + F Y TV + + + DG + L + DT+G + +R LS
Sbjct: 16 KTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGLEDYDRLRPLSYPQ 74
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCEL-EFKDVRREIAE--- 177
D F++ +++ ++++ V+ V PI++VG K +L + KD ++ E
Sbjct: 75 TDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKL 134
Query: 178 ---------TIALYDWQCGFVECSAKENYNIVQVFKELLAQAKVQYNLSPAVRRRRQSL 227
+A ++ECSA + VF E + P +R+R+ L
Sbjct: 135 TPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP---PPVKKRKRKCL 190
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 79/165 (47%), Gaps = 11/165 (6%)
Query: 62 KSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIS 120
K++ + + L F +Y T+ E+H + G + ++ DT+G +F +R+
Sbjct: 23 KTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGP-IKFNVWDTAGQEKFGGLRDGYYI 81
Query: 121 TADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIA 180
A ++ + V T+ V + +V + +PIV+ GNK +++ + V+ A++I
Sbjct: 82 QAQCAIIXFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKDRKVK---AKSIV 137
Query: 181 LY-DWQCGFVECSAKENYNIVQVF----KELLAQAKVQYNLSPAV 220
+ + + SAK NYN + F ++L+ +++ PA+
Sbjct: 138 FHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAXPAL 182
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 76/179 (42%), Gaps = 17/179 (9%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+ ++ + + F Y TV + + + DG + L + DT+G + +R LS
Sbjct: 16 KTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQEDYDRLRPLSYPQ 74
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCEL-EFKDVRREIAE--- 177
D F++ +++ ++++ V+ V PI++VG K +L + KD ++ E
Sbjct: 75 TDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKL 134
Query: 178 ---------TIALYDWQCGFVECSAKENYNIVQVFKELLAQAKVQYNLSPAVRRRRQSL 227
+A ++ECSA + VF E + P +R+R+ L
Sbjct: 135 TPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP---PPVKKRKRKCL 190
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 76/179 (42%), Gaps = 17/179 (9%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+ ++ + + F Y TV + + + DG + L + DT+G + +R LS
Sbjct: 16 KTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGLEDYDRLRPLSYPQ 74
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCEL-EFKDVRREIAE--- 177
D F++ +++ ++++ V+ V PI++VG K +L + KD ++ E
Sbjct: 75 TDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKL 134
Query: 178 ---------TIALYDWQCGFVECSAKENYNIVQVFKELLAQAKVQYNLSPAVRRRRQSL 227
+A ++ECSA + VF E + P +R+R+ L
Sbjct: 135 TPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP---PPVKKRKRKCL 190
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 67/153 (43%), Gaps = 12/153 (7%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+ ++ + + F + Y TV + + DG + L + DT+G + +R LS
Sbjct: 19 KTCMLISYTSNTFPTDYVPTVFDNFSANVVV-DGNTVNLGLWDTAGQEDYNRLRPLSYRG 77
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELE-----FKD------ 170
AD F+L +++ ++++ V + VPI++VG K +L F D
Sbjct: 78 ADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVP 137
Query: 171 VRREIAETIALYDWQCGFVECSAKENYNIVQVF 203
+ E + ++ECS+K N+ VF
Sbjct: 138 ITTNQGEELKKLIGSPIYIECSSKTQQNVKAVF 170
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 73/148 (49%), Gaps = 4/148 (2%)
Query: 62 KSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIS 120
KS+++S+F + F K T+ E E+ +G ++ I DT+G ++ A+
Sbjct: 26 KSNLLSRFTKNEFNMDSKSTIGVEFATRTLEI-EGKRIKAQIWDTAGQERYRAITSAYYR 84
Query: 121 TADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCEL-EFKDVRREIAETI 179
A ++VY + +S+++ ++ V + ++GNK +L + V E ++T
Sbjct: 85 GAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTF 144
Query: 180 ALYDWQCGFVECSAKENYNIVQVFKELL 207
A + Q F E SA + N+ + F+EL+
Sbjct: 145 AQEN-QLLFTETSALNSENVDKAFEELI 171
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 69/153 (45%), Gaps = 10/153 (6%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS+++S+F + F K T+ DG + I DT+G ++ A+
Sbjct: 42 KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRG 101
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEF-----KDVRREIA 176
A +LVY + T++ V+ +++ + + I++VGNK +L D R A
Sbjct: 102 AVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFA 161
Query: 177 ETIALYDWQCGFVECSAKENYNIVQVFKELLAQ 209
E L F+E SA ++ N+ F+ +L +
Sbjct: 162 EKNGL-----SFIETSALDSTNVEAAFQTILTE 189
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 69/153 (45%), Gaps = 10/153 (6%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS+++S+F + F K T+ DG + I DT+G ++ A+
Sbjct: 42 KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRG 101
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEF-----KDVRREIA 176
A +LVY + T++ V+ +++ + + I++VGNK +L D R A
Sbjct: 102 AVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFA 161
Query: 177 ETIALYDWQCGFVECSAKENYNIVQVFKELLAQ 209
E L F+E SA ++ N+ F+ +L +
Sbjct: 162 EKNGL-----SFIETSALDSTNVEAAFQTILTE 189
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 59/106 (55%), Gaps = 11/106 (10%)
Query: 114 MRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLM-VPIVVVGNKCEL-EFKDV 171
+R+ + T DAF++V++V D ++ V + ++ R +P+++VGNK +L ++V
Sbjct: 89 LRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREV 148
Query: 172 R----REIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQAKVQ 213
R +A T++ C +E SA ++N ++F+ + Q +++
Sbjct: 149 SLEEGRHLAGTLS-----CKHIETSAALHHNTRELFEGAVRQIRLR 189
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 64/118 (54%), Gaps = 10/118 (8%)
Query: 94 DGAQLTLDILDTSGAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGL 153
+G ++ L I DT+G +F ++ + +A+A +L Y + ++ + + +I
Sbjct: 71 NGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASN 130
Query: 154 MVPIVVVGNKCEL-EFKDVRREIAETIA----LYDWQCGFVECSAKENYNIVQVFKEL 206
V V+VGNK +L E ++V ++ AE + +Y ++E SAKE+ N+ ++F +L
Sbjct: 131 KVITVLVGNKIDLAERREVSQQRAEEFSEAQDMY-----YLETSAKESDNVEKLFLDL 183
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 6/99 (6%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K++++ F D F Y TV E + +E+ D ++ L + DTSG+ + +R LS
Sbjct: 41 KTALLHVFAKDCFPENYVPTVFENYTASFEI-DTQRIELSLWDTSGSPYYDNVRPLSYPD 99
Query: 122 ADAFVLVYAVDDASTWDVV-----KDLREQIVNKRGLMV 155
+DA ++ + + T D V +++E N + L+V
Sbjct: 100 SDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLV 138
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 78/163 (47%), Gaps = 11/163 (6%)
Query: 62 KSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIS 120
K++ + + L F +Y T+ E+H + G + ++ DT+G +F +R+
Sbjct: 25 KTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGP-IKFNVWDTAGLEKFGGLRDGYYI 83
Query: 121 TADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIA 180
A ++++ V T+ V + +V + +PIV+ GNK +++ + V+ A++I
Sbjct: 84 QAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKDRKVK---AKSIV 139
Query: 181 LY-DWQCGFVECSAKENYNIVQVF----KELLAQAKVQYNLSP 218
+ + + SAK NYN + F ++L+ +++ P
Sbjct: 140 FHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 182
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 78/163 (47%), Gaps = 11/163 (6%)
Query: 62 KSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIS 120
K++ + + L F +Y T+ E+H + G + ++ DT+G +F +R+
Sbjct: 19 KTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGP-IKFNVWDTAGLEKFGGLRDGYYI 77
Query: 121 TADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIA 180
A ++++ V T+ V + +V + +PIV+ GNK +++ + V+ A++I
Sbjct: 78 QAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKDRKVK---AKSIV 133
Query: 181 LY-DWQCGFVECSAKENYNIVQVF----KELLAQAKVQYNLSP 218
+ + + SAK NYN + F ++L+ +++ P
Sbjct: 134 FHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 176
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 6/99 (6%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K++++ F D F Y TV E + +E+ D ++ L + DTSG+ + +R LS
Sbjct: 36 KTALLHVFAKDCFPENYVPTVFENYTASFEI-DTQRIELSLWDTSGSPYYDNVRPLSYPD 94
Query: 122 ADAFVLVYAVDDASTWDVV-----KDLREQIVNKRGLMV 155
+DA ++ + + T D V +++E N + L+V
Sbjct: 95 SDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLV 133
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 69/153 (45%), Gaps = 10/153 (6%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS+++S+F + F K T+ DG + I DT+G ++ A+
Sbjct: 33 KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRG 92
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEF-----KDVRREIA 176
A +LVY + T++ V+ +++ + + I++VGNK +L D R A
Sbjct: 93 AVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFA 152
Query: 177 ETIALYDWQCGFVECSAKENYNIVQVFKELLAQ 209
E L F+E SA ++ N+ F+ +L +
Sbjct: 153 EKNGL-----SFIETSALDSTNVEAAFQTILTE 180
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 6/99 (6%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K++++ F D F Y TV E + +E+ D ++ L + DTSG+ + +R LS
Sbjct: 20 KTALLHVFAKDCFPENYVPTVFENYTASFEI-DTQRIELSLWDTSGSPYYDNVRPLSYPD 78
Query: 122 ADAFVLVYAVDDASTWDVV-----KDLREQIVNKRGLMV 155
+DA ++ + + T D V +++E N + L+V
Sbjct: 79 SDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLV 117
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 69/143 (48%), Gaps = 2/143 (1%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KSS++ +F+ +F + T+ + D + +I DT+G ++ ++ +
Sbjct: 18 KSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLERYHSLAPMYYRG 77
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIA 180
A A ++VY + + T+ K+ +++ + + I + GNK +L K V + A+ A
Sbjct: 78 AQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYA 137
Query: 181 LYDWQCGFVECSAKENYNIVQVF 203
D F+E SAK N+ ++F
Sbjct: 138 -DDNSLLFMETSAKTAMNVNEIF 159
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 70/144 (48%), Gaps = 7/144 (4%)
Query: 62 KSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIS 120
K++ + + L F +Y T+ E+H + G + ++ DT+G +F +R+
Sbjct: 23 KTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGP-IKFNVWDTAGQEKFGGLRDGYYI 81
Query: 121 TADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIA 180
A ++++ V T+ V + +V + +PIV+ GNK +++ + V+ A++I
Sbjct: 82 QAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKDRKVK---AKSIV 137
Query: 181 LY-DWQCGFVECSAKENYNIVQVF 203
+ + + SAK NYN + F
Sbjct: 138 FHRKKNLQYYDISAKSNYNFEKPF 161
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 49/105 (46%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS ++ +F D + Y T+ + DG + L I DT+G +F +
Sbjct: 11 KSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRG 70
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCEL 166
A ++VY V D +++ VK ++I V ++VGNKC+L
Sbjct: 71 AHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 115
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 70/144 (48%), Gaps = 7/144 (4%)
Query: 62 KSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIS 120
K++ + + L F +Y T+ E+H + G + ++ DT+G +F +R+
Sbjct: 23 KTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGP-IKFNVWDTAGQEKFGGLRDGYYI 81
Query: 121 TADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIA 180
A ++++ V T+ V + +V + +PIV+ GNK +++ + V+ A++I
Sbjct: 82 QAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKDRKVK---AKSIV 137
Query: 181 LY-DWQCGFVECSAKENYNIVQVF 203
+ + + SAK NYN + F
Sbjct: 138 FHRKKNLQYYDISAKSNYNFEKPF 161
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 80/165 (48%), Gaps = 11/165 (6%)
Query: 62 KSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIS 120
K++ + + L F +Y T+ E+H + G + ++ DT+G ++ +R+
Sbjct: 23 KTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGP-IKFNVWDTAGQEKYGGLRDGYYI 81
Query: 121 TADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIA 180
A ++++ V T+ V + +V + +PIV+ GNK +++ + V+ A++I
Sbjct: 82 QAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKDRKVK---AKSIV 137
Query: 181 LY-DWQCGFVECSAKENYNIVQVF----KELLAQAKVQYNLSPAV 220
+ + + SAK NYN + F ++L+ +++ PA+
Sbjct: 138 FHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL 182
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 69/143 (48%), Gaps = 2/143 (1%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KSS++ +F+ +F + T+ + D + +I DT+G ++ ++ +
Sbjct: 16 KSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRG 75
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIA 180
A A ++VY + + T+ K+ +++ + + I + GNK +L K V + A+ A
Sbjct: 76 AQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYA 135
Query: 181 LYDWQCGFVECSAKENYNIVQVF 203
D F+E SAK N+ ++F
Sbjct: 136 -DDNSLLFMETSAKTAMNVNEIF 157
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 69/153 (45%), Gaps = 10/153 (6%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS+++S+F + F K T+ DG + I DT+G ++ +
Sbjct: 18 KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRG 77
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEF-----KDVRREIA 176
A +LVY + T++ V+ +++ + + I++VGNK +L D R A
Sbjct: 78 AVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFA 137
Query: 177 ETIALYDWQCGFVECSAKENYNIVQVFKELLAQ 209
E L F+E SA ++ N+ + FK +L +
Sbjct: 138 EKNNL-----SFIETSALDSTNVEEAFKNILTE 165
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 69/153 (45%), Gaps = 10/153 (6%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS+++S+F + F K T+ DG + I DT+G ++ A+
Sbjct: 21 KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRG 80
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEF-----KDVRREIA 176
A +LVY + T++ V+ +++ + + I++VGNK +L D R A
Sbjct: 81 AVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFA 140
Query: 177 ETIALYDWQCGFVECSAKENYNIVQVFKELLAQ 209
E L F+E SA ++ N+ F+ +L +
Sbjct: 141 EKNGL-----SFIETSALDSTNVEAAFQTILTE 168
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 79/165 (47%), Gaps = 11/165 (6%)
Query: 62 KSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIS 120
K++ + + L F +Y T+ E+H + G + ++ DT+G +F +R+
Sbjct: 23 KTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGP-IKFNVWDTAGQEKFGGLRDGYYI 81
Query: 121 TADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIA 180
A ++++ V T+ V + +V + +PIV+ GNK +++ + V+ A++I
Sbjct: 82 QAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKDRKVK---AKSIV 137
Query: 181 LY-DWQCGFVECSAKENYNIVQVF----KELLAQAKVQYNLSPAV 220
+ + + SAK NYN + F ++L+ +++ P +
Sbjct: 138 FHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPCL 182
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 68/153 (44%), Gaps = 10/153 (6%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS+++S+F + F K T+ DG + I DT+G ++ A+
Sbjct: 24 KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRG 83
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEF-----KDVRREIA 176
A +LVY + T++ V+ +++ + + I +VGNK +L D R A
Sbjct: 84 AVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDLRHLRAVPTDEARAFA 143
Query: 177 ETIALYDWQCGFVECSAKENYNIVQVFKELLAQ 209
E L F+E SA ++ N+ F+ +L +
Sbjct: 144 EKNGL-----SFIETSALDSTNVEAAFQTILTE 171
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 67/143 (46%), Gaps = 2/143 (1%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KSS++ +F+ +F + T+ + D + +I DT+G ++ ++ +
Sbjct: 21 KSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRG 80
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKD-VRREIAETIA 180
A A ++VY + + T+ K +++ + + I + GNK +L K V E A+ A
Sbjct: 81 AQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANKRMVEYEEAQAYA 140
Query: 181 LYDWQCGFVECSAKENYNIVQVF 203
D F+E SAK N+ +F
Sbjct: 141 -DDNSLLFMETSAKTAMNVNDLF 162
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 69/159 (43%), Gaps = 14/159 (8%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+ ++ + + F Y TV + + + DG + L + DT+G + +R LS
Sbjct: 16 KTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQEDYDRLRPLSYPQ 74
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCEL-EFKDVRREIAE--- 177
D F++ +++ ++++ V+ V PI++VG K +L + KD ++ E
Sbjct: 75 TDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKL 134
Query: 178 ---------TIALYDWQCGFVECSAKENYNIVQVFKELL 207
+A ++ECSA + VF E +
Sbjct: 135 TPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 79/165 (47%), Gaps = 11/165 (6%)
Query: 62 KSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIS 120
K++ + + L F +Y T+ E+H + G + ++ DT+G +F + +
Sbjct: 23 KTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGP-IKFNVWDTAGQEKFGGLEDGYYI 81
Query: 121 TADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIA 180
A ++++ V T+ V + +V + +PIV+ GNK +++ + V+ A++I
Sbjct: 82 QAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKDRKVK---AKSIV 137
Query: 181 LY-DWQCGFVECSAKENYNIVQVF----KELLAQAKVQYNLSPAV 220
+ + + SAK NYN + F ++L+ +++ PA+
Sbjct: 138 FHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL 182
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 69/159 (43%), Gaps = 14/159 (8%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+ ++ + + F Y TV + + + DG + L + DT+G + +R LS
Sbjct: 16 KTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQEDYDRLRPLSYPQ 74
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCEL-EFKDVRREIAE--- 177
D F++ +++ ++++ V+ V PI++VG K +L + KD ++ E
Sbjct: 75 TDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKL 134
Query: 178 ---------TIALYDWQCGFVECSAKENYNIVQVFKELL 207
+A ++ECSA + VF E +
Sbjct: 135 TPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 69/159 (43%), Gaps = 14/159 (8%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+ ++ + + F Y TV + + + DG + L + DT+G + +R LS
Sbjct: 43 KTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQEDYDRLRPLSYPQ 101
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCEL-EFKDVRREIAE--- 177
D F++ +++ ++++ V+ V PI++VG K +L + KD ++ E
Sbjct: 102 TDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKL 161
Query: 178 ---------TIALYDWQCGFVECSAKENYNIVQVFKELL 207
+A ++ECSA + VF E +
Sbjct: 162 TPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 200
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 68/153 (44%), Gaps = 10/153 (6%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS+++S+F + F K T+ DG + I DT+G ++ A+
Sbjct: 18 KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRG 77
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEF-----KDVRREIA 176
A +LVY + T++ V+ +++ + + I +VGNK +L D R A
Sbjct: 78 AVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDLRHLRAVPTDEARAFA 137
Query: 177 ETIALYDWQCGFVECSAKENYNIVQVFKELLAQ 209
E L F+E SA ++ N+ F+ +L +
Sbjct: 138 EKNGL-----SFIETSALDSTNVEAAFQTILTE 165
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 69/159 (43%), Gaps = 14/159 (8%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+ ++ + + F Y TV + + + DG + L + DT+G + +R LS
Sbjct: 16 KTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQEDYDRLRPLSYPQ 74
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCEL-EFKDVRREIAE--- 177
D F++ +++ ++++ V+ V PI++VG K +L + KD ++ E
Sbjct: 75 TDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKL 134
Query: 178 ---------TIALYDWQCGFVECSAKENYNIVQVFKELL 207
+A ++ECSA + VF E +
Sbjct: 135 TPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 71/143 (49%), Gaps = 2/143 (1%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KSS++ +F+ +F + T+ + D + +I DT+G ++ ++ +
Sbjct: 19 KSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRG 78
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIA 180
A A ++VY + + ++ K+ +++ + + I + GNK +L K V + A++ A
Sbjct: 79 AQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYA 138
Query: 181 LYDWQCGFVECSAKENYNIVQVF 203
D F+E SAK + N+ ++F
Sbjct: 139 -DDNSLLFMETSAKTSMNVNEIF 160
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 71/159 (44%), Gaps = 14/159 (8%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+ ++ + + F Y TV + + + DG + L + DT+G + +R LS
Sbjct: 17 KTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQEDYDRLRPLSYPQ 75
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCEL-EFKD-VRREIAETI 179
D F++ +++ ++++ V+ V PI++VG K +L + KD + R + +
Sbjct: 76 TDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDKDTIERLRDKKL 135
Query: 180 ALYDWQCG-----------FVECSAKENYNIVQVFKELL 207
A + G ++ECSA + VF E +
Sbjct: 136 APITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAI 174
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 71/143 (49%), Gaps = 2/143 (1%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KSS++ +F+ +F + T+ + D + +I DT+G ++ ++ +
Sbjct: 19 KSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRG 78
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIA 180
A A ++VY + + ++ K+ +++ + + I + GNK +L K V + A++ A
Sbjct: 79 AQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYA 138
Query: 181 LYDWQCGFVECSAKENYNIVQVF 203
D F+E SAK + N+ ++F
Sbjct: 139 -DDNSLLFMETSAKTSMNVNEIF 160
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 71/143 (49%), Gaps = 2/143 (1%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KSS++ +F+ +F + T+ + D + +I DT+G ++ ++ +
Sbjct: 19 KSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRG 78
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIA 180
A A ++VY + + ++ K+ +++ + + I + GNK +L K V + A++ A
Sbjct: 79 AQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYA 138
Query: 181 LYDWQCGFVECSAKENYNIVQVF 203
D F+E SAK + N+ ++F
Sbjct: 139 -DDNSLLFMETSAKTSMNVNEIF 160
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 69/159 (43%), Gaps = 14/159 (8%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+ ++ + + F Y TV + + + DG + L + DT+G + +R LS
Sbjct: 23 KNCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQEDYDRLRPLSYPQ 81
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCEL-EFKDVRREIAE--- 177
D F++ +++ ++++ V+ V PI++VG K +L + KD ++ E
Sbjct: 82 TDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKL 141
Query: 178 ---------TIALYDWQCGFVECSAKENYNIVQVFKELL 207
+A ++ECSA + VF E +
Sbjct: 142 TPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 180
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 68/157 (43%), Gaps = 14/157 (8%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+ ++ + + F Y TV + + + DG + L + DT+G + +R LS
Sbjct: 43 KTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGLEDYDRLRPLSYPQ 101
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCEL-EFKDVRREIAE--- 177
D F++ +++ ++++ V+ V PI++VG K +L + KD ++ E
Sbjct: 102 TDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKL 161
Query: 178 ---------TIALYDWQCGFVECSAKENYNIVQVFKE 205
+A ++ECSA + VF E
Sbjct: 162 TPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 198
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 69/159 (43%), Gaps = 14/159 (8%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+ ++ + + F Y TV + + + DG + L + DT+G + +R LS
Sbjct: 19 KTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGLEDYDRLRPLSYPQ 77
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCEL-EFKDVRREIAE--- 177
D F++ +++ ++++ V+ V PI++VG K +L + KD ++ E
Sbjct: 78 TDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKL 137
Query: 178 ---------TIALYDWQCGFVECSAKENYNIVQVFKELL 207
+A ++ECSA + VF E +
Sbjct: 138 TPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 176
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 69/159 (43%), Gaps = 14/159 (8%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+ ++ + + F Y TV + + + DG + L + DT+G + +R LS
Sbjct: 16 KTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQEDYDRLRPLSYPQ 74
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCEL-EFKDVRREIAE--- 177
D F++ +++ ++++ V+ V PI++VG K +L + KD ++ E
Sbjct: 75 TDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKL 134
Query: 178 ---------TIALYDWQCGFVECSAKENYNIVQVFKELL 207
+A ++ECSA + VF E +
Sbjct: 135 TPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 71/159 (44%), Gaps = 14/159 (8%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+ ++ + + F Y TV + + + DG + L + DT+G + +R LS
Sbjct: 17 KTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQEDYDRLRPLSYPQ 75
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCEL-EFKD-VRREIAETI 179
D F++ +++ ++++ V+ V PI++VG K +L + KD + R + +
Sbjct: 76 TDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDKDTIERLRDKKL 135
Query: 180 ALYDWQCG-----------FVECSAKENYNIVQVFKELL 207
A + G ++ECSA + VF E +
Sbjct: 136 APITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAI 174
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 69/159 (43%), Gaps = 14/159 (8%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+ ++ + + F Y TV + + + DG + L + DT+G + +R LS
Sbjct: 16 KTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQEDYDRLRPLSYPQ 74
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCEL-EFKDVRREIAE--- 177
D F++ +++ ++++ V+ V PI++VG K +L + KD ++ E
Sbjct: 75 TDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKL 134
Query: 178 ---------TIALYDWQCGFVECSAKENYNIVQVFKELL 207
+A ++ECSA + VF E +
Sbjct: 135 TPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 71/143 (49%), Gaps = 2/143 (1%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KSS++ +F+ +F + T+ + D + +I DT+G ++ ++ +
Sbjct: 19 KSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRG 78
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIA 180
A A ++VY + + ++ K+ +++ + + I + GNK +L K V + A++ A
Sbjct: 79 AQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYA 138
Query: 181 LYDWQCGFVECSAKENYNIVQVF 203
D F+E SAK + N+ ++F
Sbjct: 139 -DDNSLLFMETSAKTSMNVNEIF 160
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 71/143 (49%), Gaps = 2/143 (1%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KSS++ +F+ +F + T+ + D + +I DT+G ++ ++ +
Sbjct: 19 KSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRG 78
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIA 180
A A ++VY + + ++ K+ +++ + + I + GNK +L K V + A++ A
Sbjct: 79 AQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYA 138
Query: 181 LYDWQCGFVECSAKENYNIVQVF 203
D F+E SAK + N+ ++F
Sbjct: 139 -DDNSLLFMETSAKTSMNVNEIF 160
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 71/143 (49%), Gaps = 2/143 (1%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KSS++ +F+ +F + T+ + D + +I DT+G ++ ++ +
Sbjct: 19 KSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRG 78
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIA 180
A A ++VY + + ++ K+ +++ + + I + GNK +L K V + A++ A
Sbjct: 79 AQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYA 138
Query: 181 LYDWQCGFVECSAKENYNIVQVF 203
D F+E SAK + N+ ++F
Sbjct: 139 -DDNSLLFMETSAKTSMNVNEIF 160
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 71/143 (49%), Gaps = 2/143 (1%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KSS++ +F+ +F + T+ + D + +I DT+G ++ ++ +
Sbjct: 20 KSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRG 79
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIA 180
A A ++VY + + ++ K+ +++ + + I + GNK +L K V + A++ A
Sbjct: 80 AQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYA 139
Query: 181 LYDWQCGFVECSAKENYNIVQVF 203
D F+E SAK + N+ ++F
Sbjct: 140 -DDNSLLFMETSAKTSMNVNEIF 161
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 69/159 (43%), Gaps = 14/159 (8%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+ ++ + + F Y TV + + + DG + L + DT+G + +R LS
Sbjct: 26 KTCLLISYTTNAFSGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQEDYDRLRPLSYPQ 84
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCEL-EFKDVRREIAE--- 177
D F++ +++ ++++ V+ V PI++VG K +L + KD ++ E
Sbjct: 85 TDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKL 144
Query: 178 ---------TIALYDWQCGFVECSAKENYNIVQVFKELL 207
+A ++ECSA + VF E +
Sbjct: 145 TPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 183
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 69/159 (43%), Gaps = 14/159 (8%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+ ++ + + F Y TV + + + DG + L + DT+G + +R LS
Sbjct: 35 KTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQEDYDRLRPLSYPQ 93
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCEL-EFKDVRREIAE--- 177
D F++ +++ ++++ V+ V PI++VG K +L + KD ++ E
Sbjct: 94 TDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKL 153
Query: 178 ---------TIALYDWQCGFVECSAKENYNIVQVFKELL 207
+A ++ECSA + VF E +
Sbjct: 154 TPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 192
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 50/105 (47%), Gaps = 1/105 (0%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+ ++ + + F Y TV + + + DG + L + DT+G + +R LS
Sbjct: 16 KTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQEDYDRLRPLSYPQ 74
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCEL 166
D F++ +++ ++++ V+ V PI++VG K +L
Sbjct: 75 TDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDL 119
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 71/143 (49%), Gaps = 2/143 (1%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KSS++ +F+ +F + T+ + D + +I DT+G ++ ++ +
Sbjct: 18 KSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLERYHSLAPMYYRG 77
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIA 180
A A ++VY + + ++ K+ +++ + + I + GNK +L K V + A++ A
Sbjct: 78 AQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYA 137
Query: 181 LYDWQCGFVECSAKENYNIVQVF 203
D F+E SAK + N+ ++F
Sbjct: 138 -DDNSLLFMETSAKTSMNVNEIF 159
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 68/159 (42%), Gaps = 14/159 (8%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+ ++ + + F Y TV + + + DG + L + DT+G + +R LS
Sbjct: 168 KTCLLISYTTNAFPGEYIPTVFDNYSANV-MVDGKPVNLGLWDTAGLEDYDRLRPLSYPQ 226
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCEL-EFKDVRREIAE--- 177
D F++ +++ +++ V+ V PI++VG K +L + KD ++ E
Sbjct: 227 TDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKL 286
Query: 178 ---------TIALYDWQCGFVECSAKENYNIVQVFKELL 207
+A ++ECSA + VF E +
Sbjct: 287 TPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 325
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 68/159 (42%), Gaps = 14/159 (8%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+ ++ + + F Y TV + + + DG + L + DT+G + +R LS
Sbjct: 168 KTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGLEDYDRLRPLSYPQ 226
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCEL-EFKDVRREIAE--- 177
D F++ +++ +++ V+ V PI++VG K +L + KD ++ E
Sbjct: 227 TDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKL 286
Query: 178 ---------TIALYDWQCGFVECSAKENYNIVQVFKELL 207
+A ++ECSA + VF E +
Sbjct: 287 TPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 325
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 68/159 (42%), Gaps = 14/159 (8%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+ ++ + + F Y TV + + + DG + L + DT+G + +R LS
Sbjct: 168 KTCLLISYTTNAFPGEYIPTVFDNYSANV-MVDGKPVNLGLWDTAGLEDYDRLRPLSYPQ 226
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCEL-EFKDVRREIAE--- 177
D F++ +++ +++ V+ V PI++VG K +L + KD ++ E
Sbjct: 227 TDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKL 286
Query: 178 ---------TIALYDWQCGFVECSAKENYNIVQVFKELL 207
+A ++ECSA + VF E +
Sbjct: 287 TPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 325
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 79/165 (47%), Gaps = 11/165 (6%)
Query: 62 KSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIS 120
K++ + + L +Y T+ E+H + G + ++ DT+G +F +R+
Sbjct: 28 KTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGP-IKFNVWDTAGQEKFGGLRDGYYI 86
Query: 121 TADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIA 180
A ++++ V T+ V + +V + +PIV+ GNK +++ + V+ A++I
Sbjct: 87 QAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKDRKVK---AKSIV 142
Query: 181 LY-DWQCGFVECSAKENYNIVQVF----KELLAQAKVQYNLSPAV 220
+ + + SAK NYN + F ++L+ +++ PA+
Sbjct: 143 FHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL 187
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 70/159 (44%), Gaps = 14/159 (8%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+ ++ + + F Y TV + + + D + L + DT+G + +R LS
Sbjct: 16 KTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DSKPVNLGLWDTAGQEDYDRLRPLSYPQ 74
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCEL-EFKDVRREIAE-TI 179
D F++ +++ ++++ V+ V PI++VG K +L + KD ++ E +
Sbjct: 75 TDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDKDTIEKLKEKKL 134
Query: 180 ALYDWQCG-----------FVECSAKENYNIVQVFKELL 207
A + G ++ECSA + VF E +
Sbjct: 135 APITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAI 173
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/179 (21%), Positives = 76/179 (42%), Gaps = 17/179 (9%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+ ++ + + F Y TV + + + DG + L + DT+G + +R LS
Sbjct: 16 KTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQEDYDRLRPLSYPQ 74
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCEL-EFKDVRREIAE--- 177
D ++ +++ ++++ V+ V PI++VG K +L + KD ++ E
Sbjct: 75 TDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKL 134
Query: 178 ---------TIALYDWQCGFVECSAKENYNIVQVFKELLAQAKVQYNLSPAVRRRRQSL 227
+A ++ECSA + VF E + + P +R+R+ L
Sbjct: 135 TPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI---RAVLCPPPVKKRKRKCL 190
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 56/101 (55%), Gaps = 11/101 (10%)
Query: 119 ISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLM-VPIVVVGNKCEL-EFKDVR---- 172
+ T DAF++V++V D ++ V + ++ R +P+++VGNK +L ++V
Sbjct: 83 LQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEG 142
Query: 173 REIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQAKVQ 213
R +A T++ C +E SA ++N ++F+ + Q +++
Sbjct: 143 RHLAGTLS-----CKHIETSAALHHNTRELFEGAVRQIRLR 178
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 59/106 (55%), Gaps = 11/106 (10%)
Query: 114 MRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLM-VPIVVVGNKCEL-EFKDV 171
+++ + T DAF++V++V D ++ V + ++ R +P+++VGNK +L ++V
Sbjct: 68 LQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREV 127
Query: 172 R----REIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQAKVQ 213
R +A T++ C +E SA ++N ++F+ + Q +++
Sbjct: 128 SLEEGRHLAGTLS-----CKHIETSAALHHNTRELFEGAVRQIRLR 168
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 70/159 (44%), Gaps = 14/159 (8%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+ ++ + + F Y TV + + + D + L + DT+G + +R LS
Sbjct: 22 KTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DSKPVNLGLWDTAGQEDYDRLRPLSYPQ 80
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCEL-EFKDVRREIAE-TI 179
D F++ +++ ++++ V+ V PI++VG K +L + KD ++ E +
Sbjct: 81 TDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDKDTIEKLKEKKL 140
Query: 180 ALYDWQCG-----------FVECSAKENYNIVQVFKELL 207
A + G ++ECSA + VF E +
Sbjct: 141 APITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAI 179
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 70/159 (44%), Gaps = 14/159 (8%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+ ++ + + F Y TV + + + D + L + DT+G + +R LS
Sbjct: 23 KTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DSKPVNLGLWDTAGQEDYDRLRPLSYPQ 81
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCEL-EFKDVRREIAE-TI 179
D F++ +++ ++++ V+ V PI++VG K +L + KD ++ E +
Sbjct: 82 TDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDKDTIEKLKEKKL 141
Query: 180 ALYDWQCG-----------FVECSAKENYNIVQVFKELL 207
A + G ++ECSA + VF E +
Sbjct: 142 APITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAI 180
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 72/148 (48%), Gaps = 4/148 (2%)
Query: 62 KSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIS 120
KS+++S+F D F K T+ E E+ + ++ I DT+G ++ A+
Sbjct: 23 KSNLLSRFTTDEFNIESKSTIGVEFATRTIEVEN-KKIKAQIWDTAGLERYRAITSAYYR 81
Query: 121 TADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCEL-EFKDVRREIAETI 179
A ++VY + +S+++ ++ V + ++GNK +L + V + A+
Sbjct: 82 GAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSDLAHLRAVPTDEAKNF 141
Query: 180 ALYDWQCGFVECSAKENYNIVQVFKELL 207
A+ + Q F E SA + N+ + F+EL+
Sbjct: 142 AMEN-QMLFTETSALNSDNVDKAFRELI 168
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 34/159 (21%), Positives = 68/159 (42%), Gaps = 14/159 (8%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+ ++ + + Y TV + + + DG + L + DT+G + +R LS
Sbjct: 43 KTCLLISYTTNALPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQEDYDRLRPLSYPQ 101
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCEL-EFKDVRREIAE--- 177
D F++ +++ ++++ V+ V PI++VG K +L + KD ++ E
Sbjct: 102 TDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKL 161
Query: 178 ---------TIALYDWQCGFVECSAKENYNIVQVFKELL 207
+A ++ECSA + VF E +
Sbjct: 162 TPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 200
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 70/146 (47%), Gaps = 2/146 (1%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KSS++ +F+ +F + T+ + D + +I DT+G ++ ++
Sbjct: 20 KSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPXYYRG 79
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIA 180
A A ++VY + + ++ K+ +++ + + I + GNK +L K V + A++ A
Sbjct: 80 AQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYA 139
Query: 181 LYDWQCGFVECSAKENYNIVQVFKEL 206
D F E SAK + N+ ++F +
Sbjct: 140 -DDNSLLFXETSAKTSXNVNEIFXAI 164
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 75/164 (45%), Gaps = 25/164 (15%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYEL-----PDGA-----QLTLDILDTSGAYQF 111
K+S++ Q+ +F S++ TV R + + PDGA ++ L + DT+G +F
Sbjct: 24 KTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERF 83
Query: 112 PAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVP-IVVVGNKCELEFKD 170
++ A F+L++ + + ++ V++ Q+ P IV+ GNK +LE D
Sbjct: 84 RSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLE--D 141
Query: 171 VR-------REIAETIALYDWQCGFVECSAKENYNIVQVFKELL 207
R RE+AE + + E SA NI + LL
Sbjct: 142 QRAVKEEEARELAEKYGI-----PYFETSAANGTNISHAIEMLL 180
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 76/162 (46%), Gaps = 19/162 (11%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQF-PAMRELSIS 120
K+ + +F RF R + T+ R DG ++ + + DT+G +F +M +
Sbjct: 33 KTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYR 92
Query: 121 TADAFVLVYAVDDASTWDVVKDLREQIVNKRGLM---VPIVVVGNKCELEF-----KDVR 172
A V VY + + +++ + E+ K+ L+ +P ++VGNKC+L D+
Sbjct: 93 NVHAVVFVYDMTNMASFHSLPAWIEEC--KQHLLANDIPRILVGNKCDLRSAIQVPTDLA 150
Query: 173 REIAETIALYDWQCGFVECSAK---ENYNIVQVFKELLAQAK 211
++ A+T ++ E SAK +N ++ +F L + K
Sbjct: 151 QKFADTHSM-----PLFETSAKNPNDNDHVEAIFMTLAHKLK 187
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 35.8 bits (81), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 34/159 (21%), Positives = 68/159 (42%), Gaps = 14/159 (8%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+ ++ + + F Y TV + + + DG + L + DT+G + +R LS
Sbjct: 20 KTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQEDYDRLRPLSYPQ 78
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCEL-EFKDVRREIAE--- 177
D ++ +++ ++++ V+ V PI++VG K +L + KD ++ E
Sbjct: 79 TDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKL 138
Query: 178 ---------TIALYDWQCGFVECSAKENYNIVQVFKELL 207
+A ++ECSA + VF E +
Sbjct: 139 TPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 177
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 35.8 bits (81), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 34/159 (21%), Positives = 68/159 (42%), Gaps = 14/159 (8%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+ ++ + + F Y TV + + + DG + L + DT+G + +R LS
Sbjct: 18 KTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQEDYDRLRPLSYPQ 76
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCEL-EFKDVRREIAE--- 177
D ++ +++ ++++ V+ V PI++VG K +L + KD ++ E
Sbjct: 77 TDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKL 136
Query: 178 ---------TIALYDWQCGFVECSAKENYNIVQVFKELL 207
+A ++ECSA + VF E +
Sbjct: 137 TPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 175
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 34/159 (21%), Positives = 68/159 (42%), Gaps = 14/159 (8%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K+ ++ + + F Y TV + + + DG + L + DT+G + +R LS
Sbjct: 16 KTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQEDYDRLRPLSYPQ 74
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCEL-EFKDVRREIAE--- 177
D ++ +++ ++++ V+ V PI++VG K +L + KD ++ E
Sbjct: 75 TDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKL 134
Query: 178 ---------TIALYDWQCGFVECSAKENYNIVQVFKELL 207
+A ++ECSA + VF E +
Sbjct: 135 TPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 35.4 bits (80), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 66/152 (43%), Gaps = 17/152 (11%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KSSI+ +F+ + F + T+ + + + +I DT+G +F ++
Sbjct: 16 KSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRN 75
Query: 122 ADAFVLVYAVDD------ASTWDVVKDLREQIVNKRGLMVPIVVVGNKC----ELEFKDV 171
A A ++VY V A W VK+L EQ + I +VGNK E + V
Sbjct: 76 AQAALVVYDVTKPQSFIKARHW--VKELHEQASKD----IIIALVGNKIDXLQEGGERKV 129
Query: 172 RREIAETIALYDWQCGFVECSAKENYNIVQVF 203
RE E +A + F E SAK N+ VF
Sbjct: 130 AREEGEKLA-EEKGLLFFETSAKTGENVNDVF 160
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 35.0 bits (79), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 6/109 (5%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQF-PAMRELSIS 120
K+ + +F RF R + T+ R DG ++ + + DT+G +F +M +
Sbjct: 42 KTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYR 101
Query: 121 TADAFVLVYAVDDASTWDVVKDLREQIVNKRGLM---VPIVVVGNKCEL 166
A V VY + +++ + E+ K+ L+ +P ++VGNKC+L
Sbjct: 102 NVHAVVFVYDXTNXASFHSLPAWIEEC--KQHLLANDIPRILVGNKCDL 148
>pdb|2LKC|A Chain A, Free B.St If2-G2
pdb|2LKD|A Chain A, If2-G2 Gdp Complex
Length = 178
Score = 34.7 bits (78), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Query: 100 LDILDTSGAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVV 159
+ LDT G F MR D +LV A DD V+ E I + + VPI+V
Sbjct: 57 ITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDG----VMPQTVEAINHAKAANVPIIV 112
Query: 160 VGNKCE 165
NK +
Sbjct: 113 AINKMD 118
>pdb|1ZO1|I Chain I, If2, If1, And Trna Fitted To Cryo-Em Data Of E. Coli 70s
Initiation Complex
Length = 501
Score = 33.9 bits (76), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 60/131 (45%), Gaps = 7/131 (5%)
Query: 86 HRGEYEL-PDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLR 144
H G Y + + +T LDT G F +MR D VLV A DD ++ ++
Sbjct: 40 HIGAYHVETENGMITF--LDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQ 97
Query: 145 EQIVNKRGLMVPIVVVGNKCELEFKDVRREIAE-TIALYDW--QCGFVECSAKENYNIVQ 201
+ ++V + + +K E + V+ E+++ I +W + FV SAK I +
Sbjct: 98 HAKAAQVPVVVAVNKI-DKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDE 156
Query: 202 VFKELLAQAKV 212
+ +L QA+V
Sbjct: 157 LLDAILLQAEV 167
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 33.9 bits (76), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 6/110 (5%)
Query: 96 AQLTLDILDTSGAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLM- 154
+T+ + D G +F +M E A V + D + K+ +++K L
Sbjct: 65 GNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQG 124
Query: 155 VPIVVVGNKCELEFKDVRREIAETIALYDWQ-----CGFVECSAKENYNI 199
+P++V+GNK +L +E+ E + L Q C + C K+N +I
Sbjct: 125 IPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDI 174
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 75/155 (48%), Gaps = 4/155 (2%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K++++S+F + F + T+ + A + I DT+G ++ A+
Sbjct: 38 KTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRG 97
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCEL-EFKDVRREIAETIA 180
A +LV+ + T+ VV+ +++ + + +++VGNK +L + ++V E A A
Sbjct: 98 AVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFA 157
Query: 181 LYDWQCGFVECSAKENYNIVQVFKELLAQ--AKVQ 213
+ F+E SA ++ N+ F+ +L + AKV
Sbjct: 158 ENNGLL-FLETSALDSTNVELAFETVLKEIFAKVS 191
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 75/154 (48%), Gaps = 4/154 (2%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K++++S+F + F + T+ + A + I DT+G ++ A+
Sbjct: 23 KTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRG 82
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCEL-EFKDVRREIAETIA 180
A +LV+ + T+ VV+ +++ + + +++VGNK +L + ++V E A A
Sbjct: 83 AVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFA 142
Query: 181 LYDWQCGFVECSAKENYNIVQVFKELLAQ--AKV 212
+ F+E SA ++ N+ F+ +L + AKV
Sbjct: 143 ENNGLL-FLETSALDSTNVELAFETVLKEIFAKV 175
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 64/149 (42%), Gaps = 14/149 (9%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS ++ QF+ ++F T+ G + L I DT+G +F ++
Sbjct: 38 KSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRG 97
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVV---GNKCELEFKDVRREI--- 175
A +LVY + T++ L + + R L P +VV GNK +L D RE+
Sbjct: 98 AAGALLVYDITSRETYN---SLAAWLTDARTLASPNIVVILCGNKKDL---DPEREVTFL 151
Query: 176 -AETIALYDWQCGFVECSAKENYNIVQVF 203
A A + + F+E SA N+ + F
Sbjct: 152 EASRFAQEN-ELMFLETSALTGENVEEAF 179
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 6/110 (5%)
Query: 96 AQLTLDILDTSGAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLM- 154
+T+ + D G +F +M E A V + D + K+ +++K L
Sbjct: 74 GNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQG 133
Query: 155 VPIVVVGNKCELEFKDVRREIAETIALYDWQ-----CGFVECSAKENYNI 199
+P++V+GNK +L +E+ E + L Q C + C K+N +I
Sbjct: 134 IPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDI 183
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 31.6 bits (70), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 66/157 (42%), Gaps = 18/157 (11%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KSS++ +F D F T+ + + DG + L I DT+G +F +
Sbjct: 28 KSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRG 87
Query: 122 ADAFVLVYAVDDASTW----DVVKDL-----REQIVNKRGLMVPIVVVGNKCELEFKDVR 172
A +LVY V T+ + + +L R IVN +VGNK + E ++V
Sbjct: 88 AQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNX--------LVGNKIDKENREVD 139
Query: 173 REIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQ 209
R A F+E SAK + F+EL+ +
Sbjct: 140 RNEGLKFARKHSXL-FIEASAKTCDGVQCAFEELVEK 175
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 31.6 bits (70), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 37/70 (52%)
Query: 97 QLTLDILDTSGAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVP 156
+ L + DT+G ++ +R LS + +D +L +AV++ +++D + E +
Sbjct: 70 EFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAK 129
Query: 157 IVVVGNKCEL 166
V+VG K +L
Sbjct: 130 TVLVGLKVDL 139
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 31.6 bits (70), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 37/70 (52%)
Query: 97 QLTLDILDTSGAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVP 156
+ L + DT+G ++ +R LS + +D +L +AV++ +++D + E +
Sbjct: 69 EFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAK 128
Query: 157 IVVVGNKCEL 166
V+VG K +L
Sbjct: 129 TVLVGLKVDL 138
>pdb|2I1S|A Chain A, Crystal Structure Of Protein Of Unknown Function Mm3350
From Methanosarcina Mazei Go1
pdb|2I1S|B Chain B, Crystal Structure Of Protein Of Unknown Function Mm3350
From Methanosarcina Mazei Go1
Length = 188
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 9/91 (9%)
Query: 83 EELHRGEYELPDGAQLTLDILDTSG----AYQFPAMRELSISTADAFVL-----VYAVDD 133
E+ H E+E+ + LD + G A+ P + E +D F L +Y D
Sbjct: 48 EDYHLHEFEMVNPKTGMLDKIGAEGDDFDAFGGPLVSEKKAKLSDYFTLENKEALYTYDF 107
Query: 134 ASTWDVVKDLREQIVNKRGLMVPIVVVGNKC 164
W V L + + K G+ PI G +
Sbjct: 108 GDNWQVKVRLEKILPRKEGVEYPICTAGKRA 138
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 36/178 (20%), Positives = 70/178 (39%), Gaps = 33/178 (18%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSI-- 119
K+ ++ + + F Y TV + + + DG + L + DT+G + +R LS
Sbjct: 18 KTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQEDYDRLRPLSYPQ 76
Query: 120 -----------------STADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGN 162
AD F++ +++ ++++ V+ V PI++VG
Sbjct: 77 TVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGT 136
Query: 163 KCEL-EFKDVRREIAE------------TIALYDWQCGFVECSAKENYNIVQVFKELL 207
K +L + KD ++ E +A ++ECSA + VF E +
Sbjct: 137 KLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 194
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K++++ D + Y TV E + E + ++ L + DTSG+ + +R L S
Sbjct: 40 KTAMLQVLAKDCYPETYVPTVFENYTACLET-EEQRVELSLWDTSGSPYYDNVRPLCYSD 98
Query: 122 ADAFVLVYAVDDASTWD-VVKDLREQIVN 149
+DA +L + + T D +K R +I++
Sbjct: 99 SDAVLLCFDISRPETVDSALKKWRTEILD 127
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K++++ D + Y TV E + E + ++ L + DTSG+ + +R L S
Sbjct: 23 KTAMLQVLAKDCYPETYVPTVFENYTACLET-EEQRVELSLWDTSGSPYYDNVRPLCYSD 81
Query: 122 ADAFVLVYAVDDASTWD-VVKDLREQIVN 149
+DA +L + + T D +K R +I++
Sbjct: 82 SDAVLLCFDISRPETVDSALKKWRTEILD 110
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
K++++ D + Y TV E + E + ++ L + DTSG+ + +R L S
Sbjct: 24 KTAMLQVLAKDCYPETYVPTVFENYTACLET-EEQRVELSLWDTSGSPYYDNVRPLCYSD 82
Query: 122 ADAFVLVYAVDDASTWD-VVKDLREQIVN 149
+DA +L + + T D +K R +I++
Sbjct: 83 SDAVLLCFDISRPETVDSALKKWRTEILD 111
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 64/149 (42%), Gaps = 14/149 (9%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS ++ QF+ +F T+ + G + L I DT+G +F ++
Sbjct: 23 KSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRG 82
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLM---VPIVVVGNKCELEFKDVRREI--- 175
A +LVY + T++ L + + R L + I++ GNK +L D RE+
Sbjct: 83 AAGALLVYDITSRETYNA---LTNWLTDARMLASQNIVIILCGNKKDL---DADREVTFL 136
Query: 176 -AETIALYDWQCGFVECSAKENYNIVQVF 203
A A + + F+E SA N+ + F
Sbjct: 137 EASRFAQEN-ELMFLETSALTGENVEEAF 164
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 9/117 (7%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS ++ QF+ +F T+ + G + L I DT+G +F ++
Sbjct: 24 KSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRG 83
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLM---VPIVVVGNKCELEFKDVRREI 175
A +LVY + T++ L + + R L + I++ GNK +L D RE+
Sbjct: 84 AAGALLVYDITSRETYNA---LTNWLTDARMLASQNIVIILCGNKKDL---DADREV 134
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 9/117 (7%)
Query: 62 KSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121
KS ++ QF+ +F T+ + G + L I DT+G +F ++
Sbjct: 21 KSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGLERFRSVTRSYYRG 80
Query: 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLM---VPIVVVGNKCELEFKDVRREI 175
A +LVY + T++ L + + R L + I++ GNK +L D RE+
Sbjct: 81 AAGALLVYDITSRETYNA---LTNWLTDARMLASQNIVIILCGNKKDL---DADREV 131
>pdb|1AXI|A Chain A, Structural Plasticity At The Hgh:hghbp Interface
Length = 191
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 127 LVYAVDDASTWDVVKDLREQIVNKRGLMV 155
LVY D++ +D++KDL E+I G +
Sbjct: 101 LVYGASDSNVYDLLKDLEERIQTLMGRLT 129
>pdb|1HWH|A Chain A, 1:1 Complex Of Human Growth Hormone Mutant G120r With Its
Soluble Binding Protein
pdb|1BP3|A Chain A, The Xray Structure Of A Growth Hormone-Prolactin Receptor
Complex
pdb|1A22|A Chain A, Human Growth Hormone Bound To Single Receptor
Length = 191
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 127 LVYAVDDASTWDVVKDLREQIVNKRG 152
LVY D++ +D++KDL E+I G
Sbjct: 101 LVYGASDSNVYDLLKDLEERIQTLMG 126
>pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
pdb|2FA9|B Chain B, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
Length = 189
Score = 26.9 bits (58), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 51/129 (39%), Gaps = 3/129 (2%)
Query: 77 RYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFV-LVYAVDDAS 135
R + V LH EL A +T D G Q + + + + V LV D
Sbjct: 40 RLGQHVPTLHPTSEELTI-AGMTFTTFDLGGGIQARRVWKNYLPAINGIVFLVDCADHER 98
Query: 136 TWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIALYDWQCGFVECSAKE 195
+ ++L + ++ VPI+++GNK + + E LY G S KE
Sbjct: 99 LLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKE 158
Query: 196 -NYNIVQVF 203
N ++VF
Sbjct: 159 LNARPLEVF 167
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,178,838
Number of Sequences: 62578
Number of extensions: 214038
Number of successful extensions: 1142
Number of sequences better than 100.0: 295
Number of HSP's better than 100.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 649
Number of HSP's gapped (non-prelim): 295
length of query: 253
length of database: 14,973,337
effective HSP length: 97
effective length of query: 156
effective length of database: 8,903,271
effective search space: 1388910276
effective search space used: 1388910276
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)