Query psy549
Match_columns 253
No_of_seqs 161 out of 1889
Neff 9.9
Searched_HMMs 46136
Date Fri Aug 16 18:50:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy549.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/549hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084|consensus 100.0 6.3E-39 1.4E-43 239.3 19.8 172 45-218 5-179 (205)
2 KOG0092|consensus 100.0 2.5E-36 5.3E-41 224.6 17.6 167 47-215 3-171 (200)
3 KOG0094|consensus 100.0 5.6E-36 1.2E-40 222.7 17.8 168 46-215 19-189 (221)
4 KOG0078|consensus 100.0 5.2E-35 1.1E-39 221.4 21.6 171 45-217 8-180 (207)
5 KOG0394|consensus 100.0 1.5E-35 3.2E-40 218.3 16.2 169 46-215 6-182 (210)
6 cd04120 Rab12 Rab12 subfamily. 100.0 4.8E-34 1E-38 223.9 24.1 165 50-215 1-167 (202)
7 KOG0095|consensus 100.0 2.3E-35 4.9E-40 210.0 13.8 205 45-251 3-209 (213)
8 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 2.3E-33 5E-38 223.7 23.9 164 47-213 11-190 (232)
9 KOG0098|consensus 100.0 6.7E-34 1.5E-38 210.0 18.7 170 46-217 3-174 (216)
10 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 3.1E-33 6.8E-38 221.8 23.0 168 49-218 1-183 (222)
11 cd04121 Rab40 Rab40 subfamily. 100.0 3.9E-33 8.4E-38 216.8 22.2 166 47-215 4-171 (189)
12 KOG0079|consensus 100.0 6.9E-34 1.5E-38 202.1 14.0 164 48-214 7-172 (198)
13 KOG0087|consensus 100.0 2.4E-33 5.1E-38 211.5 17.6 171 45-217 10-182 (222)
14 PLN03110 Rab GTPase; Provision 100.0 3.2E-32 7E-37 216.6 24.1 167 47-215 10-178 (216)
15 cd04133 Rop_like Rop subfamily 100.0 1.1E-32 2.3E-37 212.1 20.0 159 50-210 2-172 (176)
16 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 1.3E-32 2.9E-37 212.7 20.5 163 47-211 3-180 (182)
17 cd04144 Ras2 Ras2 subfamily. 100.0 2.2E-32 4.7E-37 213.6 21.8 161 51-213 1-165 (190)
18 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 5.6E-32 1.2E-36 213.1 23.6 166 50-215 1-172 (201)
19 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 4.5E-32 9.7E-37 208.5 20.9 163 49-213 2-166 (172)
20 cd01875 RhoG RhoG subfamily. 100.0 7.5E-32 1.6E-36 210.6 21.0 161 49-211 3-177 (191)
21 cd04131 Rnd Rnd subfamily. Th 100.0 5.1E-32 1.1E-36 209.0 19.7 160 49-211 1-176 (178)
22 cd04109 Rab28 Rab28 subfamily. 100.0 1.7E-31 3.7E-36 212.4 22.1 163 50-213 1-168 (215)
23 cd04122 Rab14 Rab14 subfamily. 100.0 1.8E-31 3.9E-36 204.0 20.6 161 49-211 2-164 (166)
24 cd04126 Rab20 Rab20 subfamily. 100.0 2.5E-31 5.5E-36 210.8 22.0 158 50-213 1-192 (220)
25 cd04175 Rap1 Rap1 subgroup. T 100.0 1.8E-31 3.9E-36 203.5 20.3 161 49-211 1-163 (164)
26 cd04136 Rap_like Rap-like subf 100.0 2.1E-31 4.6E-36 202.7 20.1 160 49-210 1-162 (163)
27 KOG0091|consensus 100.0 1E-31 2.2E-36 194.2 17.1 168 48-216 7-178 (213)
28 PTZ00369 Ras-like protein; Pro 100.0 3.7E-31 8.1E-36 206.5 21.7 165 47-213 3-169 (189)
29 cd01874 Cdc42 Cdc42 subfamily. 100.0 2.7E-31 5.9E-36 204.6 20.4 159 50-210 2-174 (175)
30 KOG0080|consensus 100.0 1.9E-31 4.1E-36 192.2 17.2 166 46-213 8-176 (209)
31 cd04110 Rab35 Rab35 subfamily. 100.0 1.2E-30 2.5E-35 205.3 23.4 164 48-214 5-170 (199)
32 cd04125 RabA_like RabA-like su 100.0 1E-30 2.2E-35 203.9 22.5 162 50-213 1-164 (188)
33 cd04117 Rab15 Rab15 subfamily. 100.0 5.4E-31 1.2E-35 200.4 20.0 158 50-209 1-160 (161)
34 KOG0093|consensus 100.0 2.2E-31 4.7E-36 189.2 16.4 171 43-215 15-187 (193)
35 cd04138 H_N_K_Ras_like H-Ras/N 100.0 8.4E-31 1.8E-35 199.0 20.9 160 49-210 1-161 (162)
36 KOG0086|consensus 100.0 2.9E-31 6.3E-36 189.8 16.5 171 46-218 6-178 (214)
37 cd01871 Rac1_like Rac1-like su 100.0 7.4E-31 1.6E-35 202.0 19.9 159 49-209 1-173 (174)
38 cd04176 Rap2 Rap2 subgroup. T 100.0 8.3E-31 1.8E-35 199.7 19.9 160 49-210 1-162 (163)
39 cd01867 Rab8_Rab10_Rab13_like 100.0 1.3E-30 2.9E-35 199.4 20.9 163 48-212 2-166 (167)
40 cd04112 Rab26 Rab26 subfamily. 100.0 1.7E-30 3.7E-35 203.1 21.8 162 50-213 1-165 (191)
41 smart00173 RAS Ras subfamily o 100.0 1.5E-30 3.2E-35 198.4 21.0 160 50-211 1-162 (164)
42 PLN03071 GTP-binding nuclear p 100.0 1.3E-30 2.9E-35 207.5 21.5 165 46-214 10-175 (219)
43 cd04132 Rho4_like Rho4-like su 100.0 1.8E-30 3.8E-35 202.3 21.6 163 50-214 1-170 (187)
44 cd04111 Rab39 Rab39 subfamily. 100.0 4.3E-30 9.3E-35 203.6 23.7 166 49-215 2-170 (211)
45 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 1.9E-30 4E-35 198.3 20.8 161 49-211 2-164 (166)
46 cd04128 Spg1 Spg1p. Spg1p (se 100.0 1.4E-30 3.1E-35 201.7 20.3 160 50-212 1-167 (182)
47 cd01865 Rab3 Rab3 subfamily. 100.0 2.1E-30 4.5E-35 198.0 20.6 160 50-211 2-163 (165)
48 PF00071 Ras: Ras family; Int 100.0 2.6E-30 5.6E-35 196.7 19.9 159 51-211 1-161 (162)
49 cd04140 ARHI_like ARHI subfami 100.0 3.9E-30 8.5E-35 196.4 20.5 158 50-209 2-163 (165)
50 cd04145 M_R_Ras_like M-Ras/R-R 100.0 5.7E-30 1.2E-34 195.1 21.1 160 49-210 2-163 (164)
51 cd04134 Rho3 Rho3 subfamily. 100.0 2.9E-30 6.4E-35 201.4 20.0 160 50-211 1-174 (189)
52 cd04127 Rab27A Rab27a subfamil 100.0 4.6E-30 1E-34 198.7 20.8 165 48-213 3-179 (180)
53 PLN03108 Rab family protein; P 100.0 1.5E-29 3.3E-34 200.4 23.9 165 48-214 5-171 (210)
54 cd04119 RJL RJL (RabJ-Like) su 100.0 4.6E-30 9.9E-35 196.1 20.1 160 50-211 1-167 (168)
55 KOG0088|consensus 100.0 6.2E-31 1.4E-35 189.1 13.8 167 45-213 9-177 (218)
56 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 8.1E-30 1.7E-34 195.6 20.6 160 51-212 2-166 (170)
57 cd01864 Rab19 Rab19 subfamily. 100.0 7.6E-30 1.6E-34 194.8 19.9 161 48-209 2-164 (165)
58 cd04143 Rhes_like Rhes_like su 100.0 7.6E-30 1.6E-34 206.1 20.6 163 50-213 1-173 (247)
59 cd04116 Rab9 Rab9 subfamily. 100.0 9.1E-30 2E-34 195.3 20.1 161 48-209 4-169 (170)
60 cd01866 Rab2 Rab2 subfamily. 100.0 1.6E-29 3.5E-34 193.6 21.2 163 48-212 3-167 (168)
61 cd00877 Ran Ran (Ras-related n 100.0 1.4E-29 3E-34 193.6 20.8 159 50-212 1-160 (166)
62 cd04142 RRP22 RRP22 subfamily. 100.0 8.9E-30 1.9E-34 199.7 19.8 163 50-213 1-176 (198)
63 cd01868 Rab11_like Rab11-like. 100.0 1.3E-29 2.8E-34 193.4 20.2 160 49-210 3-164 (165)
64 cd04113 Rab4 Rab4 subfamily. 100.0 1.2E-29 2.7E-34 192.8 19.6 158 50-209 1-160 (161)
65 cd04103 Centaurin_gamma Centau 100.0 1.7E-29 3.8E-34 191.3 19.4 153 50-209 1-157 (158)
66 cd04118 Rab24 Rab24 subfamily. 100.0 8.2E-29 1.8E-33 193.9 23.2 161 50-213 1-168 (193)
67 cd04106 Rab23_lke Rab23-like s 100.0 2.6E-29 5.7E-34 191.1 19.5 157 50-209 1-161 (162)
68 smart00174 RHO Rho (Ras homolo 100.0 2.2E-29 4.8E-34 193.8 19.3 158 52-211 1-172 (174)
69 cd04147 Ras_dva Ras-dva subfam 100.0 3.8E-29 8.2E-34 196.5 20.9 195 51-253 1-198 (198)
70 cd04124 RabL2 RabL2 subfamily. 100.0 4.8E-29 1E-33 189.7 20.7 158 50-212 1-159 (161)
71 cd04177 RSR1 RSR1 subgroup. R 100.0 6.1E-29 1.3E-33 190.4 21.0 161 49-211 1-164 (168)
72 smart00176 RAN Ran (Ras-relate 100.0 3.4E-29 7.4E-34 196.2 19.6 155 55-213 1-156 (200)
73 cd04146 RERG_RasL11_like RERG/ 100.0 3.8E-29 8.2E-34 190.9 18.7 159 51-211 1-164 (165)
74 KOG0081|consensus 100.0 1E-30 2.2E-35 188.1 9.0 171 44-215 4-185 (219)
75 cd04115 Rab33B_Rab33A Rab33B/R 100.0 7.6E-29 1.7E-33 190.2 20.0 160 49-210 2-168 (170)
76 smart00175 RAB Rab subfamily o 100.0 9.3E-29 2E-33 188.3 20.3 161 50-212 1-163 (164)
77 cd01861 Rab6 Rab6 subfamily. 100.0 7.5E-29 1.6E-33 188.4 19.7 158 50-209 1-160 (161)
78 cd04135 Tc10 TC10 subfamily. 100.0 7.6E-29 1.6E-33 190.8 19.9 159 50-210 1-173 (174)
79 cd04101 RabL4 RabL4 (Rab-like4 100.0 1.1E-28 2.4E-33 188.1 20.3 159 50-210 1-163 (164)
80 cd04130 Wrch_1 Wrch-1 subfamil 100.0 9.1E-29 2E-33 190.3 19.4 157 50-208 1-171 (173)
81 cd01860 Rab5_related Rab5-rela 100.0 1.8E-28 4E-33 186.6 20.3 160 49-210 1-162 (163)
82 cd01873 RhoBTB RhoBTB subfamil 100.0 9.3E-29 2E-33 193.3 18.8 156 49-209 2-194 (195)
83 cd04139 RalA_RalB RalA/RalB su 100.0 2.4E-28 5.3E-33 185.9 20.4 160 50-211 1-162 (164)
84 PLN03118 Rab family protein; P 100.0 1.1E-27 2.3E-32 190.2 24.7 166 45-213 10-179 (211)
85 KOG0097|consensus 100.0 1.9E-28 4.1E-33 173.3 17.2 170 45-216 7-178 (215)
86 cd04123 Rab21 Rab21 subfamily. 100.0 5.6E-28 1.2E-32 183.4 20.4 159 50-210 1-161 (162)
87 KOG0395|consensus 100.0 2.3E-28 5E-33 190.1 18.5 167 48-216 2-170 (196)
88 cd01862 Rab7 Rab7 subfamily. 100.0 9.2E-28 2E-32 184.3 21.0 163 50-213 1-169 (172)
89 cd01870 RhoA_like RhoA-like su 100.0 6.4E-28 1.4E-32 185.8 19.7 159 50-210 2-174 (175)
90 cd01863 Rab18 Rab18 subfamily. 100.0 1E-27 2.2E-32 182.2 20.1 158 50-209 1-160 (161)
91 cd04114 Rab30 Rab30 subfamily. 100.0 1.6E-27 3.6E-32 182.5 21.3 162 47-210 5-168 (169)
92 cd01892 Miro2 Miro2 subfamily. 100.0 3.6E-28 7.8E-33 186.3 17.5 162 47-211 2-166 (169)
93 cd04148 RGK RGK subfamily. Th 100.0 1.4E-27 3E-32 190.5 21.0 161 50-214 1-166 (221)
94 KOG0083|consensus 100.0 4.8E-30 1E-34 179.5 5.6 158 54-213 2-162 (192)
95 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 9.8E-28 2.1E-32 186.2 19.2 168 49-218 3-177 (183)
96 cd00876 Ras Ras family. The R 100.0 1.6E-27 3.4E-32 180.6 19.0 157 51-209 1-159 (160)
97 cd04129 Rho2 Rho2 subfamily. 100.0 2.6E-27 5.7E-32 184.4 20.0 167 50-218 2-180 (187)
98 cd04137 RheB Rheb (Ras Homolog 100.0 5.3E-27 1.1E-31 181.6 20.8 162 50-213 2-165 (180)
99 cd00154 Rab Rab family. Rab G 100.0 5.9E-27 1.3E-31 176.8 19.2 156 50-207 1-158 (159)
100 cd00157 Rho Rho (Ras homology) 100.0 5.3E-27 1.1E-31 179.9 19.2 157 50-208 1-170 (171)
101 cd01893 Miro1 Miro1 subfamily. 100.0 8.4E-27 1.8E-31 178.2 19.6 159 50-211 1-164 (166)
102 cd04149 Arf6 Arf6 subfamily. 100.0 2.8E-27 6E-32 181.1 16.6 155 48-208 8-167 (168)
103 cd04150 Arf1_5_like Arf1-Arf5- 100.0 4.7E-27 1E-31 178.3 17.4 154 50-208 1-158 (159)
104 PTZ00133 ADP-ribosylation fact 100.0 4.7E-27 1E-31 182.1 17.7 163 47-214 15-181 (182)
105 PLN00223 ADP-ribosylation fact 100.0 7.5E-27 1.6E-31 180.8 18.0 162 47-213 15-180 (181)
106 cd04158 ARD1 ARD1 subfamily. 100.0 7.6E-27 1.7E-31 178.9 17.3 159 51-215 1-165 (169)
107 smart00177 ARF ARF-like small 100.0 1.6E-26 3.4E-31 178.1 18.2 158 48-210 12-173 (175)
108 cd04154 Arl2 Arl2 subfamily. 99.9 1.9E-26 4.1E-31 177.4 17.6 157 47-208 12-172 (173)
109 KOG0393|consensus 99.9 1.8E-27 3.9E-32 181.3 11.7 165 48-213 3-181 (198)
110 PTZ00132 GTP-binding nuclear p 99.9 1.6E-25 3.6E-30 178.1 22.3 166 44-213 4-170 (215)
111 cd04162 Arl9_Arfrp2_like Arl9/ 99.9 1.2E-26 2.6E-31 177.0 14.9 151 52-208 2-163 (164)
112 cd04102 RabL3 RabL3 (Rab-like3 99.9 2.6E-25 5.6E-30 174.2 19.8 147 50-197 1-176 (202)
113 cd04157 Arl6 Arl6 subfamily. 99.9 6.9E-26 1.5E-30 172.1 16.1 154 51-208 1-161 (162)
114 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.9 1.5E-25 3.2E-30 172.6 16.9 156 48-208 14-173 (174)
115 KOG4252|consensus 99.9 6.2E-27 1.3E-31 171.9 6.9 175 46-223 17-193 (246)
116 cd04156 ARLTS1 ARLTS1 subfamil 99.9 5.1E-25 1.1E-29 167.1 16.8 154 51-208 1-159 (160)
117 cd04151 Arl1 Arl1 subfamily. 99.9 3.8E-25 8.2E-30 167.6 16.1 153 51-208 1-157 (158)
118 cd04160 Arfrp1 Arfrp1 subfamil 99.9 4E-25 8.6E-30 168.9 16.3 155 51-208 1-166 (167)
119 cd04161 Arl2l1_Arl13_like Arl2 99.9 2.7E-25 5.9E-30 170.0 15.2 153 51-208 1-166 (167)
120 cd00879 Sar1 Sar1 subfamily. 99.9 1E-24 2.2E-29 170.3 16.9 157 47-209 17-189 (190)
121 smart00178 SAR Sar1p-like memb 99.9 1.7E-24 3.8E-29 168.1 17.2 158 47-209 15-183 (184)
122 cd00878 Arf_Arl Arf (ADP-ribos 99.9 2.7E-24 5.9E-29 162.8 17.7 153 51-208 1-157 (158)
123 cd01898 Obg Obg subfamily. Th 99.9 4.8E-24 1E-28 163.3 17.1 157 51-209 2-169 (170)
124 PLN00023 GTP-binding protein; 99.9 1E-23 2.2E-28 173.1 19.4 142 45-186 17-190 (334)
125 cd04159 Arl10_like Arl10-like 99.9 1.7E-23 3.7E-28 157.9 17.7 154 51-208 1-158 (159)
126 cd01897 NOG NOG1 is a nucleola 99.9 3.2E-23 6.9E-28 158.5 17.9 155 50-210 1-167 (168)
127 PRK12299 obgE GTPase CgtA; Rev 99.9 4.3E-23 9.3E-28 173.0 19.4 162 48-212 157-329 (335)
128 PF00025 Arf: ADP-ribosylation 99.9 1.8E-23 3.9E-28 161.0 14.5 160 46-210 11-175 (175)
129 KOG0073|consensus 99.9 7.6E-23 1.6E-27 148.4 16.6 162 46-213 13-180 (185)
130 cd01890 LepA LepA subfamily. 99.9 3.3E-23 7.1E-28 160.1 15.4 154 51-210 2-176 (179)
131 TIGR00231 small_GTP small GTP- 99.9 1.5E-22 3.3E-27 152.3 18.5 157 49-207 1-160 (161)
132 PTZ00099 rab6; Provisional 99.9 8.5E-23 1.8E-27 157.1 17.3 140 72-213 3-144 (176)
133 cd04155 Arl3 Arl3 subfamily. 99.9 1.2E-22 2.6E-27 156.1 17.2 157 47-208 12-172 (173)
134 cd01878 HflX HflX subfamily. 99.9 9.5E-23 2.1E-27 160.9 16.3 157 47-210 39-204 (204)
135 TIGR02729 Obg_CgtA Obg family 99.9 3.8E-22 8.2E-27 167.2 18.3 160 48-210 156-328 (329)
136 COG1100 GTPase SAR1 and relate 99.9 5.1E-22 1.1E-26 158.4 18.1 167 49-215 5-189 (219)
137 cd04171 SelB SelB subfamily. 99.9 4.5E-22 9.8E-27 151.3 16.2 151 50-208 1-163 (164)
138 TIGR02528 EutP ethanolamine ut 99.9 9.1E-23 2E-27 151.8 11.8 135 51-207 2-141 (142)
139 TIGR00436 era GTP-binding prot 99.9 7.3E-22 1.6E-26 162.2 18.2 153 51-211 2-164 (270)
140 TIGR03156 GTP_HflX GTP-binding 99.9 9.2E-22 2E-26 166.3 16.9 154 48-209 188-350 (351)
141 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 2.3E-21 4.9E-26 148.1 16.9 157 51-211 2-166 (168)
142 cd00882 Ras_like_GTPase Ras-li 99.9 3.1E-21 6.7E-26 143.8 16.9 152 54-207 1-156 (157)
143 PF02421 FeoB_N: Ferrous iron 99.9 4.2E-22 9.1E-27 148.2 10.9 147 50-206 1-156 (156)
144 cd01879 FeoB Ferrous iron tran 99.9 3.5E-21 7.6E-26 145.5 16.2 147 54-210 1-156 (158)
145 TIGR00450 mnmE_trmE_thdF tRNA 99.9 3.9E-21 8.4E-26 167.0 18.6 154 46-214 200-363 (442)
146 PRK03003 GTP-binding protein D 99.9 2.2E-21 4.9E-26 170.8 17.3 158 48-213 210-384 (472)
147 PRK15494 era GTPase Era; Provi 99.9 8.1E-21 1.8E-25 160.3 19.8 157 47-212 50-217 (339)
148 cd01881 Obg_like The Obg-like 99.9 3.1E-21 6.8E-26 148.4 15.4 153 54-209 1-175 (176)
149 KOG0070|consensus 99.9 1.5E-21 3.2E-26 145.3 12.9 162 46-212 14-179 (181)
150 KOG3883|consensus 99.9 1.2E-20 2.7E-25 135.3 16.9 165 48-213 8-177 (198)
151 cd04164 trmE TrmE (MnmE, ThdF, 99.9 8.6E-21 1.9E-25 143.0 16.7 145 50-210 2-156 (157)
152 PRK05291 trmE tRNA modificatio 99.9 3.9E-21 8.5E-26 167.8 16.9 148 48-212 214-371 (449)
153 PRK04213 GTP-binding protein; 99.9 7.3E-22 1.6E-26 155.5 11.3 153 47-211 7-192 (201)
154 cd01891 TypA_BipA TypA (tyrosi 99.9 6.5E-21 1.4E-25 149.3 15.6 148 50-202 3-173 (194)
155 PRK12298 obgE GTPase CgtA; Rev 99.9 2E-20 4.3E-25 159.9 18.7 163 49-213 159-335 (390)
156 cd01894 EngA1 EngA1 subfamily. 99.9 1.3E-20 2.9E-25 142.1 15.6 147 53-210 1-157 (157)
157 cd01889 SelB_euk SelB subfamil 99.9 9.4E-21 2E-25 148.1 15.1 157 50-210 1-185 (192)
158 PRK12297 obgE GTPase CgtA; Rev 99.9 6.4E-20 1.4E-24 157.7 21.5 158 50-213 159-329 (424)
159 TIGR03594 GTPase_EngA ribosome 99.9 3.3E-20 7.2E-25 162.3 19.3 160 47-213 170-346 (429)
160 PRK03003 GTP-binding protein D 99.9 2.3E-20 4.9E-25 164.5 17.8 154 48-212 37-200 (472)
161 cd00881 GTP_translation_factor 99.9 3.5E-20 7.6E-25 144.1 16.8 153 51-210 1-186 (189)
162 PRK12296 obgE GTPase CgtA; Rev 99.9 3.1E-20 6.7E-25 161.5 18.0 163 47-214 157-343 (500)
163 PRK15467 ethanolamine utilizat 99.9 3E-20 6.4E-25 140.6 14.9 143 51-214 3-150 (158)
164 PRK11058 GTPase HflX; Provisio 99.9 6.4E-20 1.4E-24 158.5 18.9 157 50-213 198-364 (426)
165 COG1159 Era GTPase [General fu 99.9 3.4E-20 7.4E-25 148.5 15.7 159 48-213 5-174 (298)
166 PF08477 Miro: Miro-like prote 99.8 1.3E-20 2.8E-25 135.9 11.6 113 51-165 1-119 (119)
167 cd01895 EngA2 EngA2 subfamily. 99.8 2.2E-19 4.7E-24 137.5 18.5 154 49-209 2-173 (174)
168 cd04163 Era Era subfamily. Er 99.8 1.2E-19 2.6E-24 137.9 16.1 154 49-209 3-167 (168)
169 PRK00089 era GTPase Era; Revie 99.8 1.4E-19 3E-24 150.6 17.5 157 49-212 5-172 (292)
170 cd04105 SR_beta Signal recogni 99.8 1.3E-19 2.8E-24 142.7 16.2 118 51-169 2-124 (203)
171 TIGR01393 lepA GTP-binding pro 99.8 1.2E-19 2.5E-24 163.0 17.9 157 49-211 3-180 (595)
172 COG0486 ThdF Predicted GTPase 99.8 1.6E-19 3.5E-24 152.7 16.0 155 46-213 214-378 (454)
173 PRK00093 GTP-binding protein D 99.8 2.8E-19 6E-24 156.7 17.9 146 50-209 2-160 (435)
174 KOG0075|consensus 99.8 4.9E-20 1.1E-24 131.4 9.8 161 47-211 18-182 (186)
175 TIGR00487 IF-2 translation ini 99.8 3.9E-19 8.5E-24 158.9 18.0 156 46-208 84-247 (587)
176 cd01888 eIF2_gamma eIF2-gamma 99.8 3E-19 6.5E-24 140.7 14.8 158 50-210 1-198 (203)
177 PRK09518 bifunctional cytidyla 99.8 6.2E-19 1.3E-23 162.3 19.0 159 48-213 449-623 (712)
178 PRK00093 GTP-binding protein D 99.8 7.6E-19 1.7E-23 153.9 17.9 160 47-213 171-346 (435)
179 PRK00454 engB GTP-binding prot 99.8 7.1E-19 1.5E-23 137.8 15.5 158 46-211 21-194 (196)
180 KOG0096|consensus 99.8 8.3E-20 1.8E-24 135.8 9.3 164 47-213 8-171 (216)
181 TIGR03594 GTPase_EngA ribosome 99.8 7.3E-19 1.6E-23 153.8 16.8 151 51-212 1-161 (429)
182 TIGR03598 GTPase_YsxC ribosome 99.8 5.2E-19 1.1E-23 136.7 14.1 145 46-200 15-179 (179)
183 CHL00189 infB translation init 99.8 7.3E-19 1.6E-23 159.5 17.1 159 46-210 241-409 (742)
184 KOG0071|consensus 99.8 7.3E-19 1.6E-23 124.5 13.2 159 48-211 16-178 (180)
185 PRK05306 infB translation init 99.8 1.1E-18 2.3E-23 159.7 17.8 156 46-209 287-450 (787)
186 KOG4423|consensus 99.8 1.2E-21 2.5E-26 145.1 -1.3 168 47-214 23-197 (229)
187 PF00009 GTP_EFTU: Elongation 99.8 8.8E-19 1.9E-23 136.5 14.5 158 48-210 2-186 (188)
188 COG1160 Predicted GTPases [Gen 99.8 1.6E-18 3.4E-23 146.3 16.6 151 50-211 4-165 (444)
189 KOG0076|consensus 99.8 2.1E-19 4.6E-24 131.8 9.9 165 46-213 14-189 (197)
190 KOG1673|consensus 99.8 2.5E-19 5.4E-24 129.0 10.0 163 46-211 17-186 (205)
191 PRK09518 bifunctional cytidyla 99.8 4E-18 8.7E-23 156.9 19.9 155 47-212 273-437 (712)
192 TIGR00437 feoB ferrous iron tr 99.8 1.1E-18 2.3E-23 156.9 15.6 145 56-210 1-154 (591)
193 TIGR00475 selB selenocysteine- 99.8 2.4E-18 5.2E-23 154.4 17.2 157 50-213 1-168 (581)
194 COG1160 Predicted GTPases [Gen 99.8 2.5E-18 5.3E-23 145.2 16.0 157 48-212 177-352 (444)
195 TIGR00491 aIF-2 translation in 99.8 3.1E-18 6.7E-23 152.9 17.5 156 49-211 4-216 (590)
196 COG2229 Predicted GTPase [Gene 99.8 7.6E-18 1.7E-22 125.4 16.2 159 46-209 7-176 (187)
197 cd00880 Era_like Era (E. coli 99.8 2.6E-18 5.6E-23 129.2 13.8 150 54-209 1-162 (163)
198 PRK05433 GTP-binding protein L 99.8 6.5E-18 1.4E-22 151.9 18.6 158 48-211 6-184 (600)
199 PRK09554 feoB ferrous iron tra 99.8 1.2E-17 2.6E-22 153.6 18.9 152 49-210 3-167 (772)
200 cd01896 DRG The developmentall 99.8 3.3E-17 7.1E-22 131.5 18.6 150 51-210 2-225 (233)
201 PRK10218 GTP-binding protein; 99.8 5.6E-17 1.2E-21 145.4 18.5 159 48-211 4-195 (607)
202 PRK04004 translation initiatio 99.7 1.1E-16 2.3E-21 143.7 18.3 157 47-210 4-217 (586)
203 PF10662 PduV-EutP: Ethanolami 99.7 2.2E-17 4.7E-22 120.3 11.3 136 51-207 3-142 (143)
204 TIGR01394 TypA_BipA GTP-bindin 99.7 4.9E-17 1.1E-21 145.8 15.6 157 50-211 2-191 (594)
205 TIGR03680 eif2g_arch translati 99.7 3.7E-17 8E-22 141.5 14.2 162 47-210 2-195 (406)
206 PRK12317 elongation factor 1-a 99.7 4.8E-17 1E-21 141.9 14.4 154 46-203 3-197 (425)
207 cd04166 CysN_ATPS CysN_ATPS su 99.7 7.1E-17 1.5E-21 127.7 13.9 146 51-202 1-185 (208)
208 KOG1423|consensus 99.7 5.7E-17 1.2E-21 129.6 13.0 163 44-212 67-272 (379)
209 TIGR00483 EF-1_alpha translati 99.7 5E-17 1.1E-21 141.8 14.0 154 45-203 3-199 (426)
210 cd04168 TetM_like Tet(M)-like 99.7 1.1E-16 2.3E-21 128.8 14.8 113 51-168 1-130 (237)
211 cd04165 GTPBP1_like GTPBP1-lik 99.7 1.8E-16 3.9E-21 126.3 15.5 154 51-208 1-220 (224)
212 cd01876 YihA_EngB The YihA (En 99.7 1.5E-16 3.4E-21 120.9 14.5 149 51-209 1-169 (170)
213 cd01884 EF_Tu EF-Tu subfamily. 99.7 3.7E-16 8.1E-21 121.9 16.3 144 49-199 2-171 (195)
214 PRK10512 selenocysteinyl-tRNA- 99.7 2.4E-16 5.1E-21 142.1 16.8 156 50-211 1-166 (614)
215 KOG0074|consensus 99.7 7.4E-17 1.6E-21 114.5 10.5 160 47-210 15-178 (185)
216 KOG1707|consensus 99.7 8.3E-17 1.8E-21 138.5 12.4 178 46-227 6-189 (625)
217 COG1084 Predicted GTPase [Gene 99.7 4.4E-16 9.6E-21 126.1 15.6 160 46-211 165-336 (346)
218 KOG1489|consensus 99.7 2.2E-16 4.9E-21 126.9 13.6 158 47-208 194-364 (366)
219 cd04167 Snu114p Snu114p subfam 99.7 2.9E-16 6.3E-21 124.7 14.2 113 51-167 2-136 (213)
220 PRK04000 translation initiatio 99.7 2.7E-16 5.9E-21 136.1 15.1 162 46-210 6-200 (411)
221 COG0370 FeoB Fe2+ transport sy 99.7 2.8E-16 6.1E-21 138.5 14.8 155 49-213 3-166 (653)
222 KOG0072|consensus 99.7 9.1E-17 2E-21 114.4 7.9 160 48-212 17-180 (182)
223 cd01883 EF1_alpha Eukaryotic e 99.7 3.2E-16 6.9E-21 124.9 11.4 144 51-200 1-194 (219)
224 cd01899 Ygr210 Ygr210 subfamil 99.7 3.1E-15 6.8E-20 124.6 17.0 158 52-212 1-270 (318)
225 COG1163 DRG Predicted GTPase [ 99.7 1.2E-15 2.6E-20 123.3 13.6 172 46-231 60-305 (365)
226 PF04670 Gtr1_RagA: Gtr1/RagA 99.7 1.9E-15 4.2E-20 119.9 13.7 157 51-210 1-175 (232)
227 COG0218 Predicted GTPase [Gene 99.7 4.9E-15 1.1E-19 112.9 15.3 157 45-212 20-198 (200)
228 cd04104 p47_IIGP_like p47 (47- 99.7 4.1E-15 8.8E-20 116.6 14.7 156 49-213 1-186 (197)
229 PRK12736 elongation factor Tu; 99.7 3.4E-15 7.3E-20 128.8 15.4 158 46-210 9-200 (394)
230 cd04169 RF3 RF3 subfamily. Pe 99.7 4.7E-15 1E-19 121.2 15.4 115 50-169 3-138 (267)
231 KOG1145|consensus 99.7 2.5E-15 5.4E-20 128.6 13.7 157 47-210 151-315 (683)
232 COG2262 HflX GTPases [General 99.6 1.8E-14 3.9E-19 120.2 18.1 161 47-214 190-359 (411)
233 cd01885 EF2 EF2 (for archaea a 99.6 7.7E-15 1.7E-19 116.5 14.3 113 51-167 2-138 (222)
234 TIGR00485 EF-Tu translation el 99.6 1.1E-14 2.4E-19 125.8 15.8 145 46-197 9-179 (394)
235 COG0536 Obg Predicted GTPase [ 99.6 2.4E-14 5.2E-19 116.7 15.9 163 50-214 160-336 (369)
236 CHL00071 tufA elongation facto 99.6 2.3E-14 5.1E-19 124.2 16.2 147 46-199 9-181 (409)
237 KOG0462|consensus 99.6 1.2E-14 2.6E-19 124.5 13.8 158 47-210 58-234 (650)
238 PRK12735 elongation factor Tu; 99.6 1.6E-14 3.5E-19 124.7 14.8 158 46-210 9-202 (396)
239 PRK09602 translation-associate 99.6 3.6E-14 7.8E-19 121.7 16.8 83 50-132 2-113 (396)
240 COG0532 InfB Translation initi 99.6 1.1E-14 2.3E-19 125.3 13.4 161 48-213 4-172 (509)
241 PRK00741 prfC peptide chain re 99.6 2.2E-14 4.8E-19 127.2 15.9 117 47-168 8-145 (526)
242 PF09439 SRPRB: Signal recogni 99.6 5.2E-15 1.1E-19 112.7 9.9 118 49-169 3-127 (181)
243 KOG1191|consensus 99.6 7E-15 1.5E-19 124.7 11.3 166 46-214 265-453 (531)
244 cd01886 EF-G Elongation factor 99.6 3.1E-14 6.6E-19 116.6 13.7 112 51-169 1-131 (270)
245 PRK13351 elongation factor G; 99.6 2.5E-14 5.5E-19 131.8 14.7 116 47-169 6-140 (687)
246 TIGR02034 CysN sulfate adenyly 99.6 2.2E-14 4.9E-19 124.2 13.4 146 50-201 1-187 (406)
247 PRK05124 cysN sulfate adenylyl 99.6 2.4E-14 5.1E-19 126.0 13.5 151 46-202 24-216 (474)
248 PLN03126 Elongation factor Tu; 99.6 6.6E-14 1.4E-18 122.8 15.8 146 46-198 78-249 (478)
249 PF01926 MMR_HSR1: 50S ribosom 99.6 6.2E-14 1.3E-18 100.5 12.8 105 51-163 1-116 (116)
250 PTZ00327 eukaryotic translatio 99.6 4.2E-14 9.1E-19 123.2 13.9 162 46-210 31-232 (460)
251 PRK00049 elongation factor Tu; 99.6 1.2E-13 2.5E-18 119.3 16.1 157 46-209 9-201 (396)
252 PTZ00141 elongation factor 1- 99.6 5.8E-14 1.3E-18 122.6 14.2 149 46-201 4-203 (446)
253 PLN00043 elongation factor 1-a 99.6 5.4E-14 1.2E-18 122.7 13.8 151 46-201 4-203 (447)
254 PLN03127 Elongation factor Tu; 99.6 2.3E-13 4.9E-18 118.8 17.4 158 46-210 58-251 (447)
255 cd04170 EF-G_bact Elongation f 99.6 6.9E-14 1.5E-18 114.9 13.4 123 51-181 1-142 (268)
256 PRK05506 bifunctional sulfate 99.6 6.7E-14 1.5E-18 127.7 13.8 150 46-201 21-211 (632)
257 cd01850 CDC_Septin CDC/Septin. 99.5 6.8E-14 1.5E-18 114.9 11.3 140 49-194 4-185 (276)
258 COG0481 LepA Membrane GTPase L 99.5 1.4E-13 3E-18 116.4 11.8 161 46-211 6-186 (603)
259 COG4917 EutP Ethanolamine util 99.5 5.6E-14 1.2E-18 98.0 7.6 139 50-209 2-144 (148)
260 COG3596 Predicted GTPase [Gene 99.5 2.7E-13 5.8E-18 107.7 12.1 162 46-212 36-223 (296)
261 TIGR00484 EF-G translation elo 99.5 3.7E-13 8.1E-18 123.9 14.7 116 47-169 8-142 (689)
262 KOG0077|consensus 99.5 9.9E-14 2.1E-18 101.4 8.5 159 46-209 17-191 (193)
263 KOG1490|consensus 99.5 3.2E-13 6.9E-18 114.8 10.6 165 45-214 164-344 (620)
264 TIGR00503 prfC peptide chain r 99.5 6.9E-13 1.5E-17 117.8 13.2 118 47-169 9-147 (527)
265 cd01852 AIG1 AIG1 (avrRpt2-ind 99.5 4.3E-12 9.2E-17 99.5 16.0 158 50-213 1-186 (196)
266 PRK12739 elongation factor G; 99.5 2.8E-12 6E-17 118.2 17.1 116 47-169 6-140 (691)
267 KOG0090|consensus 99.5 1.4E-12 3.1E-17 99.5 12.0 155 49-209 38-237 (238)
268 PTZ00258 GTP-binding protein; 99.4 4.3E-12 9.4E-17 107.9 15.9 87 46-132 18-126 (390)
269 PRK09866 hypothetical protein; 99.4 1E-11 2.2E-16 109.8 17.3 108 99-208 231-350 (741)
270 PRK09435 membrane ATPase/prote 99.4 5.1E-12 1.1E-16 105.6 13.7 114 97-221 148-270 (332)
271 PRK13768 GTPase; Provisional 99.4 3.4E-12 7.3E-17 103.7 12.3 112 99-210 98-246 (253)
272 COG5256 TEF1 Translation elong 99.4 4E-12 8.8E-17 106.3 11.8 154 46-201 4-201 (428)
273 PRK12740 elongation factor G; 99.4 6.1E-12 1.3E-16 115.9 13.5 108 55-169 1-127 (668)
274 TIGR00101 ureG urease accessor 99.4 5.2E-12 1.1E-16 98.9 11.1 103 98-211 92-196 (199)
275 PRK14845 translation initiatio 99.4 1.6E-11 3.4E-16 115.5 15.3 144 61-211 473-673 (1049)
276 PRK00007 elongation factor G; 99.4 1E-11 2.2E-16 114.4 13.9 142 47-196 8-171 (693)
277 KOG1532|consensus 99.4 1.1E-11 2.3E-16 98.3 11.8 167 45-213 15-266 (366)
278 TIGR00490 aEF-2 translation el 99.4 7.4E-12 1.6E-16 115.7 12.7 117 47-168 17-152 (720)
279 KOG0705|consensus 99.3 3.4E-12 7.3E-17 109.6 8.3 203 9-231 2-209 (749)
280 cd01882 BMS1 Bms1. Bms1 is an 99.3 4.5E-11 9.8E-16 95.6 14.3 141 46-198 36-183 (225)
281 KOG1486|consensus 99.3 8.3E-11 1.8E-15 92.2 14.5 172 46-231 59-304 (364)
282 cd01853 Toc34_like Toc34-like 99.3 7.2E-11 1.6E-15 95.4 14.2 121 45-169 27-164 (249)
283 PRK09601 GTP-binding protein Y 99.3 1.4E-10 3.1E-15 97.6 16.0 83 50-132 3-107 (364)
284 smart00010 small_GTPase Small 99.3 2.8E-11 6E-16 87.4 10.3 113 50-200 1-115 (124)
285 PF03029 ATP_bind_1: Conserved 99.3 2.3E-12 4.9E-17 103.5 4.6 112 99-210 92-236 (238)
286 TIGR00157 ribosome small subun 99.3 1.5E-11 3.3E-16 99.4 9.1 96 108-208 23-120 (245)
287 cd01900 YchF YchF subfamily. 99.3 1.4E-10 2.9E-15 94.7 13.4 81 52-132 1-103 (274)
288 COG1217 TypA Predicted membran 99.3 1.1E-10 2.4E-15 98.8 12.9 161 48-213 4-197 (603)
289 cd00066 G-alpha G protein alph 99.3 1.3E-10 2.9E-15 97.4 13.2 117 97-213 160-313 (317)
290 TIGR00991 3a0901s02IAP34 GTP-b 99.3 1.4E-10 3.1E-15 95.3 12.8 119 46-167 35-166 (313)
291 PF03308 ArgK: ArgK protein; 99.3 1.3E-11 2.7E-16 98.1 6.5 160 48-218 28-237 (266)
292 COG1703 ArgK Putative periplas 99.2 1.9E-10 4.1E-15 92.7 13.1 159 48-217 50-260 (323)
293 KOG3905|consensus 99.2 6.8E-10 1.5E-14 90.2 15.2 165 46-213 49-292 (473)
294 COG0378 HypB Ni2+-binding GTPa 99.2 1.3E-10 2.9E-15 88.1 10.5 80 123-210 119-200 (202)
295 TIGR02836 spore_IV_A stage IV 99.2 8.7E-10 1.9E-14 93.2 15.9 154 48-206 16-232 (492)
296 TIGR00750 lao LAO/AO transport 99.2 2.9E-10 6.2E-15 94.8 13.1 106 97-213 126-240 (300)
297 KOG0461|consensus 99.2 2.5E-10 5.4E-15 93.4 12.2 159 48-210 6-192 (522)
298 TIGR00073 hypB hydrogenase acc 99.2 5.7E-10 1.2E-14 88.2 14.0 151 48-209 21-205 (207)
299 PRK07560 elongation factor EF- 99.2 4.6E-10 9.9E-15 104.2 15.3 117 47-168 18-153 (731)
300 KOG3886|consensus 99.2 3.3E-11 7.2E-16 93.2 6.2 146 49-197 4-165 (295)
301 PLN00116 translation elongatio 99.2 9.7E-11 2.1E-15 110.0 10.4 117 47-167 17-163 (843)
302 COG0012 Predicted GTPase, prob 99.2 2E-09 4.4E-14 89.7 15.8 85 49-133 2-109 (372)
303 PTZ00416 elongation factor 2; 99.2 1.6E-10 3.5E-15 108.3 10.1 117 47-167 17-157 (836)
304 COG5257 GCD11 Translation init 99.2 2.3E-10 4.9E-15 92.8 9.5 164 47-212 8-203 (415)
305 smart00275 G_alpha G protein a 99.2 5.4E-10 1.2E-14 94.5 12.2 116 98-213 184-336 (342)
306 KOG1707|consensus 99.2 7.5E-10 1.6E-14 96.2 13.1 163 45-214 421-586 (625)
307 PF04548 AIG1: AIG1 family; I 99.1 1.2E-09 2.5E-14 86.7 13.1 159 50-214 1-189 (212)
308 KOG1144|consensus 99.1 5.5E-10 1.2E-14 99.2 11.9 165 46-215 472-691 (1064)
309 PF05783 DLIC: Dynein light in 99.1 3.5E-09 7.5E-14 92.5 16.6 162 47-212 23-265 (472)
310 COG4108 PrfC Peptide chain rel 99.1 1.8E-10 3.8E-15 97.0 8.1 129 47-180 10-162 (528)
311 PF00350 Dynamin_N: Dynamin fa 99.1 9.4E-10 2E-14 83.9 9.4 63 99-164 102-168 (168)
312 COG3276 SelB Selenocysteine-sp 99.1 3E-09 6.5E-14 90.0 12.5 154 51-211 2-162 (447)
313 PRK10463 hydrogenase nickel in 99.1 1.1E-09 2.4E-14 89.4 9.7 55 155-209 231-287 (290)
314 PF05049 IIGP: Interferon-indu 99.1 1.3E-09 2.7E-14 92.1 10.2 154 48-212 34-219 (376)
315 COG0480 FusA Translation elong 99.0 4.1E-09 8.9E-14 96.0 12.4 119 46-169 7-143 (697)
316 KOG0468|consensus 99.0 4.3E-09 9.4E-14 92.7 9.9 116 47-166 126-261 (971)
317 smart00053 DYNc Dynamin, GTPas 98.9 2.5E-08 5.4E-13 79.9 12.9 69 98-169 125-207 (240)
318 KOG1487|consensus 98.9 4.2E-09 9E-14 83.1 8.0 172 48-233 58-299 (358)
319 COG2895 CysN GTPases - Sulfate 98.9 2.2E-08 4.8E-13 82.4 10.6 150 47-200 4-192 (431)
320 KOG0410|consensus 98.9 2.7E-08 5.8E-13 81.1 10.8 158 48-217 177-347 (410)
321 KOG0458|consensus 98.9 1.8E-08 4E-13 87.7 10.5 154 46-201 174-372 (603)
322 COG0050 TufB GTPases - transla 98.9 1.6E-08 3.5E-13 81.3 9.2 145 46-195 9-177 (394)
323 PF00735 Septin: Septin; Inte 98.9 2.7E-08 5.8E-13 82.0 10.8 115 49-169 4-157 (281)
324 cd01855 YqeH YqeH. YqeH is an 98.8 2.5E-08 5.5E-13 77.7 9.5 95 111-211 24-125 (190)
325 TIGR00993 3a0901s04IAP86 chlor 98.8 9.2E-08 2E-12 85.5 13.9 119 46-168 115-250 (763)
326 PRK12289 GTPase RsgA; Reviewed 98.8 2.6E-08 5.6E-13 84.4 9.4 93 113-210 81-174 (352)
327 cd01859 MJ1464 MJ1464. This f 98.8 5.1E-08 1.1E-12 73.5 9.0 95 112-212 3-97 (156)
328 cd01854 YjeQ_engC YjeQ/EngC. 98.8 5.9E-08 1.3E-12 80.4 9.7 87 117-208 74-161 (287)
329 COG5258 GTPBP1 GTPase [General 98.7 1.3E-07 2.8E-12 78.8 11.2 158 46-207 114-335 (527)
330 KOG0082|consensus 98.7 9.7E-08 2.1E-12 79.8 10.5 116 98-213 195-346 (354)
331 PRK00098 GTPase RsgA; Reviewed 98.7 6.8E-08 1.5E-12 80.5 8.8 86 118-208 77-164 (298)
332 KOG1491|consensus 98.7 8.8E-08 1.9E-12 78.6 8.8 88 46-133 17-126 (391)
333 PRK12288 GTPase RsgA; Reviewed 98.7 1.9E-07 4.1E-12 79.1 10.7 87 118-209 117-206 (347)
334 TIGR00092 GTP-binding protein 98.6 1.7E-07 3.7E-12 79.3 9.0 83 50-132 3-108 (368)
335 KOG3887|consensus 98.6 2.7E-07 5.9E-12 72.3 9.3 159 49-212 27-203 (347)
336 cd01857 HSR1_MMR1 HSR1/MMR1. 98.6 9E-08 1.9E-12 70.9 6.2 52 51-108 85-138 (141)
337 cd04178 Nucleostemin_like Nucl 98.6 9.6E-08 2.1E-12 73.0 6.2 56 47-108 115-172 (172)
338 COG5019 CDC3 Septin family pro 98.6 5.6E-07 1.2E-11 74.9 10.3 117 48-169 22-177 (373)
339 cd01858 NGP_1 NGP-1. Autoanti 98.6 1.3E-07 2.8E-12 71.4 5.9 55 48-108 101-157 (157)
340 cd01858 NGP_1 NGP-1. Autoanti 98.6 4.3E-07 9.4E-12 68.5 8.8 91 117-210 4-94 (157)
341 KOG2486|consensus 98.6 1.1E-07 2.4E-12 76.0 5.5 157 43-209 130-314 (320)
342 KOG1954|consensus 98.6 1E-06 2.2E-11 73.2 11.2 122 45-169 54-226 (532)
343 COG5192 BMS1 GTP-binding prote 98.5 1.6E-06 3.5E-11 75.7 12.6 139 46-195 66-210 (1077)
344 KOG2655|consensus 98.5 2E-06 4.2E-11 72.1 12.1 141 48-194 20-200 (366)
345 KOG1143|consensus 98.5 4E-07 8.8E-12 75.7 7.4 152 47-203 165-380 (591)
346 KOG0463|consensus 98.5 7.7E-07 1.7E-11 74.1 8.5 153 46-202 130-349 (641)
347 TIGR03597 GTPase_YqeH ribosome 98.5 7.6E-07 1.7E-11 76.1 8.6 95 108-209 50-151 (360)
348 cd01849 YlqF_related_GTPase Yl 98.4 1.5E-06 3.2E-11 65.4 8.9 84 123-210 1-84 (155)
349 cd01851 GBP Guanylate-binding 98.4 7.7E-06 1.7E-10 65.4 13.1 88 47-134 5-104 (224)
350 cd01855 YqeH YqeH. YqeH is an 98.4 3.5E-07 7.6E-12 71.2 5.1 55 48-108 126-190 (190)
351 TIGR03596 GTPase_YlqF ribosome 98.4 6.4E-07 1.4E-11 73.9 6.7 56 47-108 116-173 (276)
352 PRK09563 rbgA GTPase YlqF; Rev 98.4 7.8E-07 1.7E-11 73.8 7.0 58 47-110 119-178 (287)
353 cd01856 YlqF YlqF. Proteins o 98.4 1.1E-06 2.3E-11 67.3 6.5 55 48-108 114-170 (171)
354 KOG1547|consensus 98.4 3.5E-06 7.5E-11 66.2 9.2 61 48-108 45-114 (336)
355 cd01849 YlqF_related_GTPase Yl 98.4 1.1E-06 2.5E-11 66.0 6.5 56 47-108 98-155 (155)
356 KOG0460|consensus 98.4 1.3E-06 2.8E-11 71.9 7.1 146 45-194 50-218 (449)
357 KOG0464|consensus 98.4 3.2E-07 7E-12 77.2 3.6 126 39-169 27-169 (753)
358 PF09547 Spore_IV_A: Stage IV 98.3 3.8E-05 8.3E-10 65.5 15.3 153 48-205 16-231 (492)
359 COG1618 Predicted nucleotide k 98.3 4.6E-05 9.9E-10 56.5 12.9 148 47-211 3-176 (179)
360 cd01859 MJ1464 MJ1464. This f 98.3 3.1E-06 6.7E-11 63.7 7.1 55 48-108 100-156 (156)
361 KOG0448|consensus 98.3 2.5E-05 5.4E-10 69.9 13.5 144 47-194 107-309 (749)
362 PRK01889 GTPase RsgA; Reviewed 98.3 9.2E-06 2E-10 69.4 10.6 85 118-207 109-193 (356)
363 KOG0466|consensus 98.3 1.2E-06 2.6E-11 71.1 4.5 110 99-212 126-242 (466)
364 COG1161 Predicted GTPases [Gen 98.2 2E-06 4.3E-11 72.4 6.0 57 47-109 130-188 (322)
365 cd01856 YlqF YlqF. Proteins o 98.2 4.4E-06 9.5E-11 63.9 6.3 91 113-211 11-101 (171)
366 TIGR03596 GTPase_YlqF ribosome 98.2 1.5E-05 3.2E-10 65.9 9.6 91 115-213 15-105 (276)
367 cd01857 HSR1_MMR1 HSR1/MMR1. 98.2 8.2E-06 1.8E-10 60.3 7.3 77 116-198 6-84 (141)
368 KOG0467|consensus 98.2 9.6E-06 2.1E-10 73.1 8.8 114 47-165 7-135 (887)
369 PF00503 G-alpha: G-protein al 98.2 3.5E-06 7.6E-11 73.0 6.0 70 98-167 236-316 (389)
370 TIGR03348 VI_IcmF type VI secr 98.2 3.4E-05 7.3E-10 75.6 13.2 114 50-168 112-257 (1169)
371 PRK12288 GTPase RsgA; Reviewed 98.1 3.4E-06 7.4E-11 71.6 5.1 56 51-112 207-271 (347)
372 cd03112 CobW_like The function 98.1 4.4E-05 9.6E-10 57.6 9.9 22 51-72 2-23 (158)
373 PF03193 DUF258: Protein of un 98.1 3.9E-06 8.4E-11 62.9 3.7 24 50-73 36-59 (161)
374 PRK14974 cell division protein 98.0 2.4E-05 5.2E-10 66.0 8.0 95 98-204 223-323 (336)
375 COG0523 Putative GTPases (G3E 98.0 0.00033 7.1E-09 58.8 14.6 101 98-204 85-194 (323)
376 PRK12289 GTPase RsgA; Reviewed 98.0 1E-05 2.2E-10 68.7 5.6 55 51-111 174-237 (352)
377 PF02492 cobW: CobW/HypB/UreG, 98.0 1.7E-05 3.7E-10 61.1 6.2 87 98-189 85-177 (178)
378 TIGR03597 GTPase_YqeH ribosome 98.0 1.1E-05 2.3E-10 69.2 5.5 56 50-111 155-217 (360)
379 PRK10416 signal recognition pa 98.0 3.2E-05 7E-10 64.9 8.1 95 97-203 196-302 (318)
380 PRK09563 rbgA GTPase YlqF; Rev 98.0 4.9E-05 1.1E-09 63.1 9.1 91 115-213 18-108 (287)
381 PRK13796 GTPase YqeH; Provisio 98.0 5.6E-05 1.2E-09 64.9 9.3 84 119-209 66-157 (365)
382 TIGR00157 ribosome small subun 97.9 2.1E-05 4.6E-10 63.7 5.9 55 50-111 121-184 (245)
383 PRK13796 GTPase YqeH; Provisio 97.9 1.4E-05 3.1E-10 68.5 5.0 56 49-110 160-222 (365)
384 cd01854 YjeQ_engC YjeQ/EngC. 97.9 1.6E-05 3.4E-10 66.0 4.9 25 50-74 162-186 (287)
385 PF03266 NTPase_1: NTPase; In 97.9 0.00015 3.3E-09 55.2 9.7 135 51-199 1-163 (168)
386 TIGR00064 ftsY signal recognit 97.9 9.5E-05 2.1E-09 60.8 8.7 96 97-204 154-261 (272)
387 PRK11537 putative GTP-binding 97.8 0.00038 8.3E-09 58.5 12.1 97 98-203 91-196 (318)
388 KOG0469|consensus 97.8 0.0001 2.2E-09 63.9 8.6 118 45-166 15-162 (842)
389 cd03114 ArgK-like The function 97.8 0.00017 3.6E-09 53.8 8.7 58 97-165 91-148 (148)
390 KOG1424|consensus 97.8 3.6E-05 7.8E-10 66.8 5.3 57 47-109 312-370 (562)
391 COG1162 Predicted GTPases [Gen 97.8 4E-05 8.8E-10 62.8 5.2 58 51-112 166-230 (301)
392 PRK13695 putative NTPase; Prov 97.8 0.0012 2.6E-08 50.5 13.1 22 50-71 1-22 (174)
393 PRK00098 GTPase RsgA; Reviewed 97.8 3.9E-05 8.4E-10 64.0 5.2 25 49-73 164-188 (298)
394 TIGR01425 SRP54_euk signal rec 97.7 0.00059 1.3E-08 59.4 10.7 66 97-168 182-253 (429)
395 COG3640 CooC CO dehydrogenase 97.6 0.00091 2E-08 52.8 10.0 49 116-167 150-198 (255)
396 COG1162 Predicted GTPases [Gen 97.6 0.00063 1.4E-08 56.0 9.3 94 113-210 71-166 (301)
397 TIGR02475 CobW cobalamin biosy 97.6 0.0034 7.3E-08 53.4 13.9 102 98-205 93-224 (341)
398 PRK12727 flagellar biosynthesi 97.5 0.0017 3.6E-08 57.8 12.1 137 47-193 348-519 (559)
399 KOG0465|consensus 97.5 0.0002 4.2E-09 63.5 6.3 118 46-169 36-171 (721)
400 KOG0085|consensus 97.5 0.00018 3.9E-09 56.5 5.4 118 97-214 198-352 (359)
401 KOG3859|consensus 97.5 0.0002 4.3E-09 57.7 5.4 60 48-107 41-104 (406)
402 PRK14722 flhF flagellar biosyn 97.5 0.0016 3.4E-08 55.8 11.2 24 48-71 136-159 (374)
403 KOG0459|consensus 97.5 0.00018 4E-09 60.8 5.4 157 46-204 76-279 (501)
404 KOG1534|consensus 97.5 0.00087 1.9E-08 52.0 8.5 119 99-218 99-258 (273)
405 KOG0099|consensus 97.5 0.00053 1.2E-08 54.9 7.3 71 97-167 201-282 (379)
406 KOG2484|consensus 97.4 0.00018 4E-09 60.6 4.3 59 46-108 249-307 (435)
407 cd03115 SRP The signal recogni 97.4 0.0018 4E-08 49.4 9.4 66 98-169 83-154 (173)
408 PF06858 NOG1: Nucleolar GTP-b 97.4 0.0017 3.6E-08 39.5 6.9 47 118-165 10-58 (58)
409 COG1419 FlhF Flagellar GTP-bin 97.4 0.0028 6.1E-08 54.2 10.8 113 49-168 203-352 (407)
410 PRK14721 flhF flagellar biosyn 97.3 0.0015 3.2E-08 56.9 9.0 24 48-71 190-213 (420)
411 COG3523 IcmF Type VI protein s 97.3 0.0023 4.9E-08 62.0 10.9 113 51-168 127-270 (1188)
412 PRK11889 flhF flagellar biosyn 97.3 0.0026 5.5E-08 54.7 10.1 22 49-70 241-262 (436)
413 PF05621 TniB: Bacterial TniB 97.3 0.0025 5.4E-08 52.6 9.5 63 4-74 24-86 (302)
414 PF13207 AAA_17: AAA domain; P 97.3 0.00025 5.4E-09 50.7 3.1 22 51-72 1-22 (121)
415 KOG0447|consensus 97.3 0.0092 2E-07 52.8 13.0 68 99-169 413-494 (980)
416 cd01983 Fer4_NifH The Fer4_Nif 97.3 0.004 8.7E-08 42.1 9.1 69 52-134 2-71 (99)
417 cd00009 AAA The AAA+ (ATPases 97.2 0.0023 5.1E-08 46.6 8.3 26 49-74 19-44 (151)
418 TIGR00959 ffh signal recogniti 97.2 0.0017 3.7E-08 56.7 8.0 65 98-168 183-253 (428)
419 cd02042 ParA ParA and ParB of 97.2 0.0046 1E-07 42.8 8.8 82 52-145 2-84 (104)
420 PRK08118 topology modulation p 97.2 0.00036 7.8E-09 53.1 3.3 23 50-72 2-24 (167)
421 cd02038 FleN-like FleN is a me 97.2 0.0053 1.1E-07 45.2 9.4 103 53-166 4-109 (139)
422 COG0563 Adk Adenylate kinase a 97.1 0.00041 8.9E-09 53.3 3.2 23 50-72 1-23 (178)
423 PRK07261 topology modulation p 97.1 0.00044 9.4E-09 52.9 3.2 22 51-72 2-23 (171)
424 PF13555 AAA_29: P-loop contai 97.1 0.00057 1.2E-08 42.5 3.1 21 51-71 25-45 (62)
425 PRK10867 signal recognition pa 97.1 0.0026 5.6E-08 55.6 8.0 65 98-168 184-254 (433)
426 KOG4273|consensus 97.1 0.0029 6.3E-08 50.4 7.5 117 48-169 3-124 (418)
427 PF13671 AAA_33: AAA domain; P 97.0 0.00052 1.1E-08 50.5 2.9 21 52-72 2-22 (143)
428 TIGR00150 HI0065_YjeE ATPase, 97.0 0.0023 5E-08 46.5 6.2 25 49-73 22-46 (133)
429 COG1116 TauB ABC-type nitrate/ 97.0 0.00054 1.2E-08 54.7 3.0 22 51-72 31-52 (248)
430 PRK00771 signal recognition pa 97.0 0.0017 3.6E-08 56.9 6.3 23 48-70 94-116 (437)
431 cd02019 NK Nucleoside/nucleoti 97.0 0.00074 1.6E-08 43.3 3.2 21 52-72 2-22 (69)
432 KOG1533|consensus 97.0 0.0007 1.5E-08 53.4 3.4 69 98-168 97-177 (290)
433 PRK12726 flagellar biosynthesi 97.0 0.0027 5.9E-08 54.3 6.9 24 48-71 205-228 (407)
434 cd03222 ABC_RNaseL_inhibitor T 97.0 0.007 1.5E-07 46.5 8.6 26 48-73 24-49 (177)
435 PF13521 AAA_28: AAA domain; P 96.9 0.00054 1.2E-08 51.8 2.4 22 51-72 1-22 (163)
436 PF03215 Rad17: Rad17 cell cyc 96.9 0.0097 2.1E-07 53.4 10.4 22 51-72 47-68 (519)
437 COG1136 SalX ABC-type antimicr 96.9 0.00075 1.6E-08 53.5 3.0 23 50-72 32-54 (226)
438 PF00005 ABC_tran: ABC transpo 96.9 0.00078 1.7E-08 49.2 2.9 25 49-73 11-35 (137)
439 COG1126 GlnQ ABC-type polar am 96.9 0.0011 2.4E-08 51.8 3.7 40 173-213 145-186 (240)
440 KOG2485|consensus 96.9 0.0025 5.5E-08 52.3 5.9 62 45-109 139-207 (335)
441 cd04178 Nucleostemin_like Nucl 96.9 0.003 6.4E-08 48.3 5.9 57 123-181 1-57 (172)
442 PRK14738 gmk guanylate kinase; 96.9 0.0025 5.5E-08 50.2 5.7 26 47-72 11-36 (206)
443 KOG2423|consensus 96.8 0.00087 1.9E-08 56.7 2.9 57 45-107 303-361 (572)
444 PRK12724 flagellar biosynthesi 96.8 0.022 4.8E-07 49.5 11.3 23 49-71 223-245 (432)
445 PRK06995 flhF flagellar biosyn 96.8 0.017 3.6E-07 51.3 10.6 22 50-71 257-278 (484)
446 PRK05480 uridine/cytidine kina 96.8 0.0015 3.3E-08 51.5 3.9 26 47-72 4-29 (209)
447 PF00004 AAA: ATPase family as 96.8 0.0013 2.9E-08 47.4 3.3 22 52-73 1-22 (132)
448 PF00437 T2SE: Type II/IV secr 96.8 0.0022 4.8E-08 52.7 4.8 25 48-72 126-150 (270)
449 cd03111 CpaE_like This protein 96.8 0.015 3.3E-07 40.5 8.4 99 55-163 6-106 (106)
450 cd01131 PilT Pilus retraction 96.7 0.012 2.5E-07 46.2 8.5 23 51-73 3-25 (198)
451 PF03205 MobB: Molybdopterin g 96.7 0.0014 3.1E-08 48.3 3.1 22 51-72 2-23 (140)
452 PF04665 Pox_A32: Poxvirus A32 96.7 0.0014 3E-08 52.6 3.2 27 46-72 10-36 (241)
453 PRK06217 hypothetical protein; 96.7 0.0014 3E-08 50.7 3.1 23 50-72 2-24 (183)
454 smart00382 AAA ATPases associa 96.7 0.0016 3.5E-08 47.0 3.3 25 50-74 3-27 (148)
455 TIGR00235 udk uridine kinase. 96.7 0.0017 3.7E-08 51.2 3.7 25 48-72 5-29 (207)
456 COG3840 ThiQ ABC-type thiamine 96.7 0.0016 3.4E-08 49.7 3.1 27 48-74 24-50 (231)
457 PRK05703 flhF flagellar biosyn 96.7 0.02 4.4E-07 50.2 10.5 86 98-193 300-392 (424)
458 PF13238 AAA_18: AAA domain; P 96.7 0.0014 3.1E-08 47.0 2.9 21 52-72 1-21 (129)
459 cd00820 PEPCK_HprK Phosphoenol 96.7 0.0016 3.5E-08 45.4 2.8 22 49-70 15-36 (107)
460 cd02023 UMPK Uridine monophosp 96.7 0.0016 3.4E-08 51.0 3.1 21 52-72 2-22 (198)
461 TIGR02322 phosphon_PhnN phosph 96.7 0.0016 3.5E-08 50.0 3.2 22 51-72 3-24 (179)
462 PRK10078 ribose 1,5-bisphospho 96.7 0.0017 3.6E-08 50.3 3.2 22 51-72 4-25 (186)
463 cd00071 GMPK Guanosine monopho 96.7 0.0017 3.7E-08 47.6 3.1 21 52-72 2-22 (137)
464 cd03238 ABC_UvrA The excision 96.6 0.0018 3.9E-08 49.7 3.2 25 47-71 19-43 (176)
465 PRK14530 adenylate kinase; Pro 96.6 0.0019 4.1E-08 51.3 3.4 22 50-71 4-25 (215)
466 KOG1970|consensus 96.6 0.022 4.8E-07 50.5 10.1 86 124-210 196-283 (634)
467 PRK10646 ADP-binding protein; 96.6 0.01 2.3E-07 44.2 7.1 23 50-72 29-51 (153)
468 PRK05541 adenylylsulfate kinas 96.6 0.0027 5.9E-08 48.6 4.1 28 45-72 3-30 (176)
469 PRK14737 gmk guanylate kinase; 96.6 0.0043 9.3E-08 48.1 5.1 25 49-73 4-28 (186)
470 COG1120 FepC ABC-type cobalami 96.6 0.0017 3.7E-08 52.5 3.0 22 50-71 29-50 (258)
471 COG0194 Gmk Guanylate kinase [ 96.6 0.0022 4.7E-08 49.0 3.3 26 48-73 3-28 (191)
472 PRK03839 putative kinase; Prov 96.6 0.0021 4.5E-08 49.5 3.3 22 51-72 2-23 (180)
473 PRK06731 flhF flagellar biosyn 96.6 0.0075 1.6E-07 49.5 6.6 115 48-168 74-225 (270)
474 PRK08233 hypothetical protein; 96.6 0.0024 5.3E-08 49.0 3.6 24 49-72 3-26 (182)
475 cd02036 MinD Bacterial cell di 96.6 0.11 2.3E-06 39.6 12.7 84 99-189 64-147 (179)
476 TIGR03263 guanyl_kin guanylate 96.5 0.0021 4.6E-08 49.3 3.1 22 51-72 3-24 (180)
477 COG1117 PstB ABC-type phosphat 96.5 0.0018 4E-08 50.5 2.6 22 50-71 34-55 (253)
478 TIGR01360 aden_kin_iso1 adenyl 96.5 0.0026 5.6E-08 49.1 3.5 23 49-71 3-25 (188)
479 PRK01889 GTPase RsgA; Reviewed 96.5 0.0029 6.3E-08 54.2 4.1 25 49-73 195-219 (356)
480 cd02025 PanK Pantothenate kina 96.5 0.0021 4.6E-08 51.2 3.0 21 52-72 2-22 (220)
481 PF07728 AAA_5: AAA domain (dy 96.5 0.0024 5.1E-08 46.9 3.0 21 51-71 1-21 (139)
482 cd01130 VirB11-like_ATPase Typ 96.5 0.015 3.3E-07 44.9 7.7 26 48-73 24-49 (186)
483 COG3839 MalK ABC-type sugar tr 96.5 0.0021 4.6E-08 54.1 3.0 22 51-72 31-52 (338)
484 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.5 0.0024 5.2E-08 50.7 3.2 26 48-73 29-54 (218)
485 COG3638 ABC-type phosphate/pho 96.5 0.0023 5E-08 50.7 2.9 22 50-71 31-52 (258)
486 PRK00300 gmk guanylate kinase; 96.5 0.0032 6.9E-08 49.5 3.9 25 48-72 4-28 (205)
487 PRK04195 replication factor C 96.5 0.04 8.7E-07 49.3 11.2 25 49-73 39-63 (482)
488 PRK10751 molybdopterin-guanine 96.5 0.0029 6.4E-08 48.2 3.4 24 49-72 6-29 (173)
489 cd03225 ABC_cobalt_CbiO_domain 96.5 0.0025 5.5E-08 50.3 3.2 26 48-73 26-51 (211)
490 TIGR01166 cbiO cobalt transpor 96.5 0.0026 5.6E-08 49.4 3.2 24 50-73 19-42 (190)
491 TIGR00960 3a0501s02 Type II (G 96.5 0.0026 5.5E-08 50.5 3.2 26 48-73 28-53 (216)
492 PRK13900 type IV secretion sys 96.5 0.021 4.6E-07 48.4 8.8 26 48-73 159-184 (332)
493 PRK14723 flhF flagellar biosyn 96.5 0.012 2.7E-07 54.8 7.8 22 50-71 186-207 (767)
494 cd03264 ABC_drug_resistance_li 96.4 0.0028 6.1E-08 50.0 3.3 24 49-73 26-49 (211)
495 PRK13949 shikimate kinase; Pro 96.4 0.003 6.6E-08 48.1 3.3 21 51-71 3-23 (169)
496 COG1121 ZnuC ABC-type Mn/Zn tr 96.4 0.0026 5.6E-08 51.3 3.0 22 50-71 31-52 (254)
497 TIGR02673 FtsE cell division A 96.4 0.0028 6E-08 50.2 3.2 26 48-73 27-52 (214)
498 cd03226 ABC_cobalt_CbiO_domain 96.4 0.0028 6.2E-08 49.8 3.2 26 48-73 25-50 (205)
499 PRK13851 type IV secretion sys 96.4 0.022 4.8E-07 48.5 8.7 27 47-73 160-186 (344)
500 cd03261 ABC_Org_Solvent_Resist 96.4 0.0028 6.1E-08 50.9 3.2 25 49-73 26-50 (235)
No 1
>KOG0084|consensus
Probab=100.00 E-value=6.3e-39 Score=239.28 Aligned_cols=172 Identities=28% Similarity=0.420 Sum_probs=160.8
Q ss_pred CCCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCC
Q psy549 45 LQKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTAD 123 (253)
Q Consensus 45 ~~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 123 (253)
.....+||+++|++|||||+|+.||.++.|+..+..|++ ++....+.+ +|+.+++++|||+|+++|+.....+|++|+
T Consensus 5 ~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~-~gk~iKlQIWDTAGQERFrtit~syYR~ah 83 (205)
T KOG0084|consen 5 EYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVEL-DGKTIKLQIWDTAGQERFRTITSSYYRGAH 83 (205)
T ss_pred ccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeee-cceEEEEEeeeccccHHHhhhhHhhccCCC
Confidence 356789999999999999999999999999999999998 888888999 999999999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCc-EEEeccCCCCCHHH
Q psy549 124 AFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCG-FVECSAKENYNIVQ 201 (253)
Q Consensus 124 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~ 201 (253)
++|+|||+++.+||.++..|+.++..+...++|.++||||+|+.+. .+..+.++.++. ..+++ ++++||+++.|+++
T Consensus 84 Gii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~-~~~~~~f~ETSAK~~~NVe~ 162 (205)
T KOG0084|consen 84 GIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFAD-ELGIPIFLETSAKDSTNVED 162 (205)
T ss_pred eEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHH-hcCCcceeecccCCccCHHH
Confidence 9999999999999999999999999999899999999999999887 888999999999 66777 99999999999999
Q ss_pred HHHHHHHHHHHhcccCh
Q psy549 202 VFKELLAQAKVQYNLSP 218 (253)
Q Consensus 202 l~~~l~~~~~~~~~~~~ 218 (253)
.|..|+..+..++....
T Consensus 163 ~F~~la~~lk~~~~~~~ 179 (205)
T KOG0084|consen 163 AFLTLAKELKQRKGLHV 179 (205)
T ss_pred HHHHHHHHHHHhcccCC
Confidence 99999999988765543
No 2
>KOG0092|consensus
Probab=100.00 E-value=2.5e-36 Score=224.58 Aligned_cols=167 Identities=24% Similarity=0.390 Sum_probs=155.1
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEE
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAF 125 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 125 (253)
...+||+++|+.+||||||+-||..+.|.....+|++ .+....+.+ +...++|.||||+|+++|.++-+.+|++|+++
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~-~~~~ikfeIWDTAGQERy~slapMYyRgA~AA 81 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTV-DDNTIKFEIWDTAGQERYHSLAPMYYRGANAA 81 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEe-CCcEEEEEEEEcCCcccccccccceecCCcEE
Confidence 4578999999999999999999999999887777877 888888888 77799999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHH
Q psy549 126 VLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFK 204 (253)
Q Consensus 126 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 204 (253)
|+|||+++.+||..+..|...+.....+++-+.+||||+|+.+. ++..++++.+++ ..+..++++||++|.|++++|.
T Consensus 82 ivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe-~~gll~~ETSAKTg~Nv~~if~ 160 (200)
T KOG0092|consen 82 IVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAE-SQGLLFFETSAKTGENVNEIFQ 160 (200)
T ss_pred EEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHH-hcCCEEEEEecccccCHHHHHH
Confidence 99999999999999999999999998888999999999999984 899999999999 7889999999999999999999
Q ss_pred HHHHHHHHhcc
Q psy549 205 ELLAQAKVQYN 215 (253)
Q Consensus 205 ~l~~~~~~~~~ 215 (253)
.|++.+.....
T Consensus 161 ~Ia~~lp~~~~ 171 (200)
T KOG0092|consen 161 AIAEKLPCSDP 171 (200)
T ss_pred HHHHhccCccc
Confidence 99999965533
No 3
>KOG0094|consensus
Probab=100.00 E-value=5.6e-36 Score=222.70 Aligned_cols=168 Identities=29% Similarity=0.454 Sum_probs=154.6
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCE
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADA 124 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 124 (253)
....+|++|+|+.+|||||||++|+.+.|...|..|++ ++..+++.+ .+..+++++|||+|+++|+++.+.+++++++
T Consensus 19 ~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l-~d~~vrLQlWDTAGQERFrslipsY~Rds~v 97 (221)
T KOG0094|consen 19 PLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 97 (221)
T ss_pred cceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEE-cCcEEEEEEEecccHHHHhhhhhhhccCCeE
Confidence 34559999999999999999999999999999999998 999999988 8889999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCC-CCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHH
Q psy549 125 FVLVYAVDDASTWDVVKDLREQIVNKRGL-MVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQV 202 (253)
Q Consensus 125 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 202 (253)
+|+|||+++..||+...+|++.+...++. ++-+++||||.||.+. ++..+.++..++ ..+..|+++||+.|.||.++
T Consensus 98 aviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAk-el~a~f~etsak~g~NVk~l 176 (221)
T KOG0094|consen 98 AVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAK-ELNAEFIETSAKAGENVKQL 176 (221)
T ss_pred EEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHH-HhCcEEEEecccCCCCHHHH
Confidence 99999999999999999999999997766 4888999999999887 888888888888 67779999999999999999
Q ss_pred HHHHHHHHHHhcc
Q psy549 203 FKELLAQAKVQYN 215 (253)
Q Consensus 203 ~~~l~~~~~~~~~ 215 (253)
|..|+..+.....
T Consensus 177 FrrIaa~l~~~~~ 189 (221)
T KOG0094|consen 177 FRRIAAALPGMEV 189 (221)
T ss_pred HHHHHHhccCccc
Confidence 9998888866644
No 4
>KOG0078|consensus
Probab=100.00 E-value=5.2e-35 Score=221.45 Aligned_cols=171 Identities=27% Similarity=0.437 Sum_probs=160.8
Q ss_pred CCCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCC
Q psy549 45 LQKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTAD 123 (253)
Q Consensus 45 ~~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 123 (253)
.....+||+++|+++||||+|+.+|..+.|...+..|.+ ++....+.+ ++..+.+++|||+|+++|+.+...+|++|+
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l-~g~~i~lQiWDtaGQerf~ti~~sYyrgA~ 86 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIEL-DGKKIKLQIWDTAGQERFRTITTAYYRGAM 86 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEe-CCeEEEEEEEEcccchhHHHHHHHHHhhcC
Confidence 567789999999999999999999999999999999988 888888888 889999999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHH
Q psy549 124 AFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQV 202 (253)
Q Consensus 124 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 202 (253)
++++|||+++..||+++..|+..+..+....+|.++||||+|+... ++..+.++.++. ..++.++||||++|.||.+.
T Consensus 87 gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~-e~G~~F~EtSAk~~~NI~ea 165 (207)
T KOG0078|consen 87 GILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAR-EYGIKFFETSAKTNFNIEEA 165 (207)
T ss_pred eeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHH-HhCCeEEEccccCCCCHHHH
Confidence 9999999999999999999999999999889999999999999886 899999999999 67999999999999999999
Q ss_pred HHHHHHHHHHhcccC
Q psy549 203 FKELLAQAKVQYNLS 217 (253)
Q Consensus 203 ~~~l~~~~~~~~~~~ 217 (253)
|..|++.++.+....
T Consensus 166 F~~La~~i~~k~~~~ 180 (207)
T KOG0078|consen 166 FLSLARDILQKLEDA 180 (207)
T ss_pred HHHHHHHHHhhcchh
Confidence 999999998754443
No 5
>KOG0394|consensus
Probab=100.00 E-value=1.5e-35 Score=218.34 Aligned_cols=169 Identities=27% Similarity=0.474 Sum_probs=157.0
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCE
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADA 124 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 124 (253)
....+||+|+|++|+|||||+|++.+.+|...+-.|+. ++..+.+.+ |+..+.++||||+|+++|+++...+|+++|+
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~V-d~~~vtlQiWDTAGQERFqsLg~aFYRgaDc 84 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQV-DDRSVTLQIWDTAGQERFQSLGVAFYRGADC 84 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEE-cCeEEEEEEEecccHHHhhhcccceecCCce
Confidence 45679999999999999999999999999888888887 999999999 8899999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCC----CCCEEEEEecCCCCC---ccccHHHHHHHHHhcCCCcEEEeccCCCC
Q psy549 125 FVLVYAVDDASTWDVVKDLREQIVNKRGL----MVPIVVVGNKCELEF---KDVRREIAETIALYDWQCGFVECSAKENY 197 (253)
Q Consensus 125 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 197 (253)
+++|||++++.||+.+..|..++.....+ .-|+||+|||+|+.+ .++....++.++....++||||+|||...
T Consensus 85 Cvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~ 164 (210)
T KOG0394|consen 85 CVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEAT 164 (210)
T ss_pred EEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccc
Confidence 99999999999999999999999986653 379999999999977 48999999999998999999999999999
Q ss_pred CHHHHHHHHHHHHHHhcc
Q psy549 198 NIVQVFKELLAQAKVQYN 215 (253)
Q Consensus 198 ~i~~l~~~l~~~~~~~~~ 215 (253)
||.+.|..+++.++....
T Consensus 165 NV~~AFe~ia~~aL~~E~ 182 (210)
T KOG0394|consen 165 NVDEAFEEIARRALANED 182 (210)
T ss_pred cHHHHHHHHHHHHHhccc
Confidence 999999999999987754
No 6
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=4.8e-34 Score=223.91 Aligned_cols=165 Identities=27% Similarity=0.422 Sum_probs=145.4
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEE
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLV 128 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 128 (253)
+.|+++|+.|||||||+++|..+.|...+..|.. ++....+.+ ++..+.+++||++|+++|..++..+++++|++|+|
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~-~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlV 79 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVEL-RGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILV 79 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEE-CCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEE
Confidence 3689999999999999999999999887777766 666677788 77889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHHHHH
Q psy549 129 YAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELL 207 (253)
Q Consensus 129 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 207 (253)
||++++.+|+.+..|+..+......++|+++|+||+|+... ++..+.++.+++...++.+++|||++|.||+++|.+|+
T Consensus 80 fDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~ 159 (202)
T cd04120 80 YDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLV 159 (202)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHH
Confidence 99999999999999999877666667999999999999654 67777788888744578899999999999999999999
Q ss_pred HHHHHhcc
Q psy549 208 AQAKVQYN 215 (253)
Q Consensus 208 ~~~~~~~~ 215 (253)
+.+.....
T Consensus 160 ~~~~~~~~ 167 (202)
T cd04120 160 DDILKKMP 167 (202)
T ss_pred HHHHHhCc
Confidence 98876533
No 7
>KOG0095|consensus
Probab=100.00 E-value=2.3e-35 Score=210.04 Aligned_cols=205 Identities=23% Similarity=0.317 Sum_probs=180.7
Q ss_pred CCCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCC
Q psy549 45 LQKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTAD 123 (253)
Q Consensus 45 ~~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 123 (253)
..+.-+||+++|+.|+|||+|+++|..+-|++....|++ ++..+++.+ ++..+++++|||+|+++|++.+..+|+.++
T Consensus 3 dykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev-~gekiklqiwdtagqerfrsitqsyyrsah 81 (213)
T KOG0095|consen 3 DYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEV-NGEKIKLQIWDTAGQERFRSITQSYYRSAH 81 (213)
T ss_pred ccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEE-CCeEEEEEEeeccchHHHHHHHHHHhhhcc
Confidence 345678999999999999999999999999888888887 889999999 999999999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHH
Q psy549 124 AFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQV 202 (253)
Q Consensus 124 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 202 (253)
++|+|||++...+|+.+..|+.++..+...++--++|+||+|+.+. ++.+++++.+.+ ....-++++||++..|++.+
T Consensus 82 alilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~-~qdmyfletsakea~nve~l 160 (213)
T KOG0095|consen 82 ALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSE-AQDMYFLETSAKEADNVEKL 160 (213)
T ss_pred eEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHH-hhhhhhhhhcccchhhHHHH
Confidence 9999999999999999999999999988777888999999999887 899999999998 56777899999999999999
Q ss_pred HHHHHHHHHHhcccChhhccccccCCCCcCCCCCCCCCCcccccCCCcc
Q psy549 203 FKELLAQAKVQYNLSPAVRRRRQSLPNYIGTTGSASSKGRYMLKRNSCT 251 (253)
Q Consensus 203 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~ 251 (253)
|..++-.+.......-....-+...+++.+.+++.......+.+...||
T Consensus 161 f~~~a~rli~~ar~~d~v~~~~a~a~~~~seg~si~l~s~aqt~~~~cc 209 (213)
T KOG0095|consen 161 FLDLACRLISEARQNDLVNNVSAPAPNSSSEGKSIKLISYAQTQLLTCC 209 (213)
T ss_pred HHHHHHHHHHHHHhccchhhccccCccccCCCCcccchhHHHHHHhccc
Confidence 9999888776666555566667777777766777766666666666666
No 8
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=2.3e-33 Score=223.65 Aligned_cols=164 Identities=23% Similarity=0.344 Sum_probs=145.4
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEE
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFV 126 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 126 (253)
...+||+++|++|||||+|+++|..+.|...+.+|....+...+.+ ++..+.++||||+|+++|..++..+++++|++|
T Consensus 11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~-~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vI 89 (232)
T cd04174 11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLET-EEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL 89 (232)
T ss_pred eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEE-CCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEE
Confidence 4568999999999999999999999999888888887666667777 888999999999999999999999999999999
Q ss_pred EEEECCChhhHHH-HHHHHHHHHHhcCCCCCEEEEEecCCCCC-------------ccccHHHHHHHHHhcCCC-cEEEe
Q psy549 127 LVYAVDDASTWDV-VKDLREQIVNKRGLMVPIVVVGNKCELEF-------------KDVRREIAETIALYDWQC-GFVEC 191 (253)
Q Consensus 127 ~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~-------------~~~~~~~~~~~~~~~~~~-~~~~~ 191 (253)
+|||++++.+|+. +..|+..+.... +..|+++|+||+|+.. ..+..+.++.+++ ..++ +|++|
T Consensus 90 lVyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~-~~~~~~~~Et 167 (232)
T cd04174 90 LCFDISRPETVDSALKKWKAEIMDYC-PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAK-QLGAEVYLEC 167 (232)
T ss_pred EEEECCChHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHH-HcCCCEEEEc
Confidence 9999999999998 478998887654 5789999999999864 3577888999998 5666 69999
Q ss_pred ccCCCC-CHHHHHHHHHHHHHHh
Q psy549 192 SAKENY-NIVQVFKELLAQAKVQ 213 (253)
Q Consensus 192 Sa~~~~-~i~~l~~~l~~~~~~~ 213 (253)
||++|. ||+++|..++..+.+.
T Consensus 168 SAktg~~~V~e~F~~~~~~~~~~ 190 (232)
T cd04174 168 SAFTSEKSIHSIFRSASLLCLNK 190 (232)
T ss_pred cCCcCCcCHHHHHHHHHHHHHHh
Confidence 999997 8999999999988764
No 9
>KOG0098|consensus
Probab=100.00 E-value=6.7e-34 Score=209.96 Aligned_cols=170 Identities=24% Similarity=0.333 Sum_probs=158.1
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCE
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADA 124 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 124 (253)
....+|++++|+.|||||+|+.+|+...|.+.+..|.+ ++....+++ |++++++++|||+|++.|++.+..+|+.+.+
T Consensus 3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~i-d~k~IKlqiwDtaGqe~frsv~~syYr~a~G 81 (216)
T KOG0098|consen 3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTI-DGKQIKLQIWDTAGQESFRSVTRSYYRGAAG 81 (216)
T ss_pred ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEE-cCceEEEEEEecCCcHHHHHHHHHHhccCcc
Confidence 34679999999999999999999999999888888887 777778888 9999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHH
Q psy549 125 FVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVF 203 (253)
Q Consensus 125 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 203 (253)
+|+|||++.+++|..+..|+..+.+...++.-+++++||+|+... .+..++.+.+++ ..++.++++||+++.|++|.|
T Consensus 82 alLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~-ehgLifmETSakt~~~VEEaF 160 (216)
T KOG0098|consen 82 ALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAR-EHGLIFMETSAKTAENVEEAF 160 (216)
T ss_pred eEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHH-HcCceeehhhhhhhhhHHHHH
Confidence 999999999999999999999999988899999999999999887 899999999999 689999999999999999999
Q ss_pred HHHHHHHHHhcccC
Q psy549 204 KELLAQAKVQYNLS 217 (253)
Q Consensus 204 ~~l~~~~~~~~~~~ 217 (253)
...+..+....+..
T Consensus 161 ~nta~~Iy~~~q~g 174 (216)
T KOG0098|consen 161 INTAKEIYRKIQDG 174 (216)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999888765543
No 10
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=3.1e-33 Score=221.82 Aligned_cols=168 Identities=23% Similarity=0.366 Sum_probs=143.1
Q ss_pred cceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEE
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLV 128 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 128 (253)
.+||+|+|++|||||||+++|..+.++..+.+|....+...+.+ ++..+.+.||||+|+++|..++..+++++|++|+|
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~-~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illv 79 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEI-DKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLIC 79 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEE-CCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEE
Confidence 37999999999999999999999999888888888777677777 88899999999999999999999999999999999
Q ss_pred EECCChhhHHHHH-HHHHHHHHhcCCCCCEEEEEecCCCCCc-------------cccHHHHHHHHHhcCCCcEEEeccC
Q psy549 129 YAVDDASTWDVVK-DLREQIVNKRGLMVPIVVVGNKCELEFK-------------DVRREIAETIALYDWQCGFVECSAK 194 (253)
Q Consensus 129 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~-------------~~~~~~~~~~~~~~~~~~~~~~Sa~ 194 (253)
||++++++|+.+. .|...+ ....+++|+++|+||+|+..+ .+..+.+..+++....++|+||||+
T Consensus 80 fdis~~~Sf~~i~~~w~~~~-~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk 158 (222)
T cd04173 80 FDISRPETLDSVLKKWQGET-QEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSR 158 (222)
T ss_pred EECCCHHHHHHHHHHHHHHH-HhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCC
Confidence 9999999999985 455544 434477999999999998652 2566788888885544699999999
Q ss_pred CCCC-HHHHHHHHHHHHHHhcccCh
Q psy549 195 ENYN-IVQVFKELLAQAKVQYNLSP 218 (253)
Q Consensus 195 ~~~~-i~~l~~~l~~~~~~~~~~~~ 218 (253)
++.+ |+++|..++..+..+.+...
T Consensus 159 ~~~~~V~~~F~~~~~~~~~~~~~~~ 183 (222)
T cd04173 159 SSERSVRDVFHVATVASLGRGHRQL 183 (222)
T ss_pred cCCcCHHHHHHHHHHHHHhccCCcc
Confidence 9885 99999999998776555443
No 11
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=3.9e-33 Score=216.81 Aligned_cols=166 Identities=26% Similarity=0.353 Sum_probs=145.1
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEE
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAF 125 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 125 (253)
...+||+|+|+.|||||||+++|.++.+...+.++.. +.....+.+ ++..+.+++||++|+++|..++..+++++|++
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~-~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~i 82 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILL-DGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGI 82 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEE-CCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence 3568999999999999999999999888766655544 555566777 78889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHH
Q psy549 126 VLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFK 204 (253)
Q Consensus 126 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 204 (253)
|+|||++++.+|+.+..|+..+.... +++|+++|+||.|+.+. .+..+.++.+++ ..++++++|||++|.||+++|+
T Consensus 83 llVfD~t~~~Sf~~~~~w~~~i~~~~-~~~piilVGNK~DL~~~~~v~~~~~~~~a~-~~~~~~~e~SAk~g~~V~~~F~ 160 (189)
T cd04121 83 ILVYDITNRWSFDGIDRWIKEIDEHA-PGVPKILVGNRLHLAFKRQVATEQAQAYAE-RNGMTFFEVSPLCNFNITESFT 160 (189)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccchhccCCCHHHHHHHHH-HcCCEEEEecCCCCCCHHHHHH
Confidence 99999999999999999999997654 68999999999999764 677888889988 5678999999999999999999
Q ss_pred HHHHHHHHhcc
Q psy549 205 ELLAQAKVQYN 215 (253)
Q Consensus 205 ~l~~~~~~~~~ 215 (253)
+|++.+..+..
T Consensus 161 ~l~~~i~~~~~ 171 (189)
T cd04121 161 ELARIVLMRHG 171 (189)
T ss_pred HHHHHHHHhcC
Confidence 99998865544
No 12
>KOG0079|consensus
Probab=100.00 E-value=6.9e-34 Score=202.05 Aligned_cols=164 Identities=29% Similarity=0.409 Sum_probs=152.8
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEE
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFV 126 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 126 (253)
.-++.+|+|++|+|||+|+.+|..+.|...|+.|++ ++...++.+ +|..++++|||++|+++|+.+...++++.++++
T Consensus 7 hLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i-~G~~VkLqIwDtAGqErFrtitstyyrgthgv~ 85 (198)
T KOG0079|consen 7 HLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDI-NGDRVKLQIWDTAGQERFRTITSTYYRGTHGVI 85 (198)
T ss_pred HHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeec-CCcEEEEEEeecccHHHHHHHHHHHccCCceEE
Confidence 346889999999999999999999999999998888 888889999 899999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHHH
Q psy549 127 LVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFKE 205 (253)
Q Consensus 127 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 205 (253)
+|||+++.+||.++.+|++.+.... +.+|-++|+||.|.++. .+..+.++.++. ..++.+|++|+++..|++..|.-
T Consensus 86 vVYDVTn~ESF~Nv~rWLeei~~nc-dsv~~vLVGNK~d~~~RrvV~t~dAr~~A~-~mgie~FETSaKe~~NvE~mF~c 163 (198)
T KOG0079|consen 86 VVYDVTNGESFNNVKRWLEEIRNNC-DSVPKVLVGNKNDDPERRVVDTEDARAFAL-QMGIELFETSAKENENVEAMFHC 163 (198)
T ss_pred EEEECcchhhhHhHHHHHHHHHhcC-ccccceecccCCCCccceeeehHHHHHHHH-hcCchheehhhhhcccchHHHHH
Confidence 9999999999999999999988866 57899999999999887 788889999999 88999999999999999999999
Q ss_pred HHHHHHHhc
Q psy549 206 LLAQAKVQY 214 (253)
Q Consensus 206 l~~~~~~~~ 214 (253)
|.++++...
T Consensus 164 it~qvl~~k 172 (198)
T KOG0079|consen 164 ITKQVLQAK 172 (198)
T ss_pred HHHHHHHHH
Confidence 999988765
No 13
>KOG0087|consensus
Probab=100.00 E-value=2.4e-33 Score=211.50 Aligned_cols=171 Identities=24% Similarity=0.331 Sum_probs=158.2
Q ss_pred CCCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCC
Q psy549 45 LQKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTAD 123 (253)
Q Consensus 45 ~~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 123 (253)
.....+||+++|++++|||-|+.+|..++|..+.-+|++ .+....+.+ +++.++.+||||+|+++|+..+..+|+++-
T Consensus 10 ~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~v-d~k~vkaqIWDTAGQERyrAitSaYYrgAv 88 (222)
T KOG0087|consen 10 EYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNV-DGKTVKAQIWDTAGQERYRAITSAYYRGAV 88 (222)
T ss_pred ccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceee-cCcEEEEeeecccchhhhccccchhhcccc
Confidence 356789999999999999999999999999777777777 888888888 999999999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHH
Q psy549 124 AFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQV 202 (253)
Q Consensus 124 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 202 (253)
++++|||++...+|+.+.+|+.++..+.++++++++|+||+||.+. .+..+.++.+++ ..++.++++||.++.|+++.
T Consensus 89 GAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae-~~~l~f~EtSAl~~tNVe~a 167 (222)
T KOG0087|consen 89 GALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAE-KEGLFFLETSALDATNVEKA 167 (222)
T ss_pred eeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHH-hcCceEEEecccccccHHHH
Confidence 9999999999999999999999999999999999999999999876 788999999999 78899999999999999999
Q ss_pred HHHHHHHHHHhcccC
Q psy549 203 FKELLAQAKVQYNLS 217 (253)
Q Consensus 203 ~~~l~~~~~~~~~~~ 217 (253)
|..++..+.......
T Consensus 168 F~~~l~~I~~~vs~k 182 (222)
T KOG0087|consen 168 FERVLTEIYKIVSKK 182 (222)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999887765544
No 14
>PLN03110 Rab GTPase; Provisional
Probab=100.00 E-value=3.2e-32 Score=216.57 Aligned_cols=167 Identities=25% Similarity=0.372 Sum_probs=146.2
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEE
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAF 125 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 125 (253)
...+||+|+|++|||||||+++|.+..+...+.+|.. ++....+.+ ++..+.++|||++|++++..++..+++.++++
T Consensus 10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~-~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ 88 (216)
T PLN03110 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQV-EGKTVKAQIWDTAGQERYRAITSAYYRGAVGA 88 (216)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEE-CCEEEEEEEEECCCcHHHHHHHHHHhCCCCEE
Confidence 3568999999999999999999999888666656655 666677777 77889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHH
Q psy549 126 VLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFK 204 (253)
Q Consensus 126 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 204 (253)
|+|||++++.+|+.+..|+..+......++|+++|+||+|+... .+..+.+..++. ..+++++++||++|.|++++|+
T Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~-~~~~~~~e~SA~~g~~v~~lf~ 167 (216)
T PLN03110 89 LLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAE-KEGLSFLETSALEATNVEKAFQ 167 (216)
T ss_pred EEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHH-HcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999888776678999999999998655 566777888887 5688999999999999999999
Q ss_pred HHHHHHHHhcc
Q psy549 205 ELLAQAKVQYN 215 (253)
Q Consensus 205 ~l~~~~~~~~~ 215 (253)
+|+..+.....
T Consensus 168 ~l~~~i~~~~~ 178 (216)
T PLN03110 168 TILLEIYHIIS 178 (216)
T ss_pred HHHHHHHHHhh
Confidence 99999877543
No 15
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=1.1e-32 Score=212.06 Aligned_cols=159 Identities=26% Similarity=0.431 Sum_probs=141.2
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEEE
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLVY 129 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 129 (253)
+||+++|++|+|||+|+.+|..+.|...+.+|..+.+...+.+ ++..+.+++|||+|+++|..++..+++++|++|+||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~-~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSV-DGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEE-CCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 6899999999999999999999999888888888777777777 888899999999999999999999999999999999
Q ss_pred ECCChhhHHHH-HHHHHHHHHhcCCCCCEEEEEecCCCCCc-----------cccHHHHHHHHHhcCCCcEEEeccCCCC
Q psy549 130 AVDDASTWDVV-KDLREQIVNKRGLMVPIVVVGNKCELEFK-----------DVRREIAETIALYDWQCGFVECSAKENY 197 (253)
Q Consensus 130 d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 197 (253)
|++++.||+.+ ..|+..+.... .++|+++|+||+|+.+. .+..+.++.+++..+..++++|||++|.
T Consensus 81 d~~~~~Sf~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~ 159 (176)
T cd04133 81 SLISRASYENVLKKWVPELRHYA-PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ 159 (176)
T ss_pred EcCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence 99999999998 68998887654 57999999999999653 3678888899884333369999999999
Q ss_pred CHHHHHHHHHHHH
Q psy549 198 NIVQVFKELLAQA 210 (253)
Q Consensus 198 ~i~~l~~~l~~~~ 210 (253)
||+++|+.+++.+
T Consensus 160 nV~~~F~~~~~~~ 172 (176)
T cd04133 160 NVKAVFDAAIKVV 172 (176)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999999876
No 16
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=1.3e-32 Score=212.74 Aligned_cols=163 Identities=26% Similarity=0.395 Sum_probs=144.0
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEE
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFV 126 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 126 (253)
...+||+++|++|||||||+++|..+.+...+.+|....+...+.+ ++..+.+++|||+|+++|..++..+++++|++|
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~-~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i 81 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEI-DTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 81 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEE-CCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence 4568999999999999999999999999888888888777777777 888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHH-HHHHHHHHHhcCCCCCEEEEEecCCCCC-------------ccccHHHHHHHHHhcCCCcEEEec
Q psy549 127 LVYAVDDASTWDVV-KDLREQIVNKRGLMVPIVVVGNKCELEF-------------KDVRREIAETIALYDWQCGFVECS 192 (253)
Q Consensus 127 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~-------------~~~~~~~~~~~~~~~~~~~~~~~S 192 (253)
+|||++++.+|+.+ ..|+..+.... +++|+++|+||+|+.. ..+..+.++.+++....++|++||
T Consensus 82 lvyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~S 160 (182)
T cd04172 82 ICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS 160 (182)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECC
Confidence 99999999999997 78998887754 6799999999999864 147788899999844335899999
Q ss_pred cCCCCC-HHHHHHHHHHHHH
Q psy549 193 AKENYN-IVQVFKELLAQAK 211 (253)
Q Consensus 193 a~~~~~-i~~l~~~l~~~~~ 211 (253)
|++|.| |+++|..+++.+.
T Consensus 161 Ak~~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 161 ALQSENSVRDIFHVATLACV 180 (182)
T ss_pred cCCCCCCHHHHHHHHHHHHh
Confidence 999998 9999999998653
No 17
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=2.2e-32 Score=213.60 Aligned_cols=161 Identities=34% Similarity=0.623 Sum_probs=139.0
Q ss_pred eEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEEEE
Q psy549 51 RVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLVYA 130 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 130 (253)
||+|+|++|||||||+++|..+.+...+.+|..+.+...+.+ ++..+.+++|||+|+++|..++..+++.+|++|+|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVV-DGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEE-CCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 689999999999999999999998877888877666666666 7778899999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhc---CCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHHHH
Q psy549 131 VDDASTWDVVKDLREQIVNKR---GLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFKEL 206 (253)
Q Consensus 131 ~~~~~s~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 206 (253)
+++..+|+.+..|+..+.... ..++|+++|+||+|+... .+....+..++. ..+++++++||++|.|++++|.++
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~-~~~~~~~e~SAk~~~~v~~l~~~l 158 (190)
T cd04144 80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALAR-RLGCEFIEASAKTNVNVERAFYTL 158 (190)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHH-HhCCEEEEecCCCCCCHHHHHHHH
Confidence 999999999999988876643 256899999999998654 555556666666 456789999999999999999999
Q ss_pred HHHHHHh
Q psy549 207 LAQAKVQ 213 (253)
Q Consensus 207 ~~~~~~~ 213 (253)
++.+...
T Consensus 159 ~~~l~~~ 165 (190)
T cd04144 159 VRALRQQ 165 (190)
T ss_pred HHHHHHh
Confidence 9887544
No 18
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=5.6e-32 Score=213.14 Aligned_cols=166 Identities=25% Similarity=0.383 Sum_probs=141.5
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEE
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLV 128 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 128 (253)
+||+|+|++|||||||+++|+++.+...+.+|.. ++....+.+.++..+.+.+||++|+++|..++..+++++|++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 5899999999999999999999988777777766 555566777337889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhc----CCCCCEEEEEecCCCCC-ccccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHH
Q psy549 129 YAVDDASTWDVVKDLREQIVNKR----GLMVPIVVVGNKCELEF-KDVRREIAETIALYDWQCGFVECSAKENYNIVQVF 203 (253)
Q Consensus 129 ~d~~~~~s~~~~~~~~~~~~~~~----~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 203 (253)
||++++.+|+.+..|+..+.... ...+|+++|+||+|+.. ..+..+.+..++......+++++||++|.|++++|
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f 160 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAM 160 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHH
Confidence 99999999999999988876532 35689999999999974 35667777788774444789999999999999999
Q ss_pred HHHHHHHHHhcc
Q psy549 204 KELLAQAKVQYN 215 (253)
Q Consensus 204 ~~l~~~~~~~~~ 215 (253)
++|++.+....+
T Consensus 161 ~~l~~~l~~~~~ 172 (201)
T cd04107 161 RFLVKNILANDK 172 (201)
T ss_pred HHHHHHHHHhch
Confidence 999998876533
No 19
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=4.5e-32 Score=208.48 Aligned_cols=163 Identities=29% Similarity=0.509 Sum_probs=143.9
Q ss_pred cceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEE
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLV 128 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 128 (253)
.+||+|+|++|||||||+++|.++.+...+.+|.+..+...+.+ ++..+.+++||++|+++|..++..+++.+|++++|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARI-DNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEE-CCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 47999999999999999999999999877888887666667777 78889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHh-cCCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHHHH
Q psy549 129 YAVDDASTWDVVKDLREQIVNK-RGLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFKEL 206 (253)
Q Consensus 129 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 206 (253)
||++++.+|..+..|+..+... ...++|+++|+||+|+.+. .+..+.+..+++ ..++++++|||++|.||+++|++|
T Consensus 81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~-~~~~~~~e~Sa~~~~~v~~~f~~l 159 (172)
T cd04141 81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAR-EFNCPFFETSAALRHYIDDAFHGL 159 (172)
T ss_pred EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHH-HhCCEEEEEecCCCCCHHHHHHHH
Confidence 9999999999999888877764 3357999999999998654 567777888887 567899999999999999999999
Q ss_pred HHHHHHh
Q psy549 207 LAQAKVQ 213 (253)
Q Consensus 207 ~~~~~~~ 213 (253)
++.+...
T Consensus 160 ~~~~~~~ 166 (172)
T cd04141 160 VREIRRK 166 (172)
T ss_pred HHHHHHh
Confidence 9988654
No 20
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=7.5e-32 Score=210.63 Aligned_cols=161 Identities=23% Similarity=0.433 Sum_probs=140.0
Q ss_pred cceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEE
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLV 128 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 128 (253)
.+||+++|+.|||||||+++|..+.|...+.+|..+.+...+.+ ++..+.+++|||+|+++|..++..+++++|++|+|
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAV-DGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEE-CCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 48999999999999999999999999888888887766666777 78889999999999999999999999999999999
Q ss_pred EECCChhhHHHHH-HHHHHHHHhcCCCCCEEEEEecCCCCCc-------------cccHHHHHHHHHhcCCCcEEEeccC
Q psy549 129 YAVDDASTWDVVK-DLREQIVNKRGLMVPIVVVGNKCELEFK-------------DVRREIAETIALYDWQCGFVECSAK 194 (253)
Q Consensus 129 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~-------------~~~~~~~~~~~~~~~~~~~~~~Sa~ 194 (253)
||++++.+|+.+. .|+..+.... +++|+++|+||.|+.+. .+..+.++.+++....+++++|||+
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk 160 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHHC-PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSAL 160 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCC
Confidence 9999999999986 5777666543 67999999999999653 2455677888874444789999999
Q ss_pred CCCCHHHHHHHHHHHHH
Q psy549 195 ENYNIVQVFKELLAQAK 211 (253)
Q Consensus 195 ~~~~i~~l~~~l~~~~~ 211 (253)
+|.||+++|.++++.+.
T Consensus 161 ~g~~v~e~f~~l~~~~~ 177 (191)
T cd01875 161 NQDGVKEVFAEAVRAVL 177 (191)
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999998773
No 21
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=5.1e-32 Score=209.02 Aligned_cols=160 Identities=26% Similarity=0.387 Sum_probs=140.9
Q ss_pred cceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEE
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLV 128 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 128 (253)
.+||+++|++|||||||+++|.++.+...+.+|....+...+.+ ++..+.+++|||+|+++|..++..+++++|++|+|
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~-~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv 79 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEI-DEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC 79 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEE-CCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence 37999999999999999999999999888888887666677777 78889999999999999999999999999999999
Q ss_pred EECCChhhHHHH-HHHHHHHHHhcCCCCCEEEEEecCCCCC-------------ccccHHHHHHHHHhcCC-CcEEEecc
Q psy549 129 YAVDDASTWDVV-KDLREQIVNKRGLMVPIVVVGNKCELEF-------------KDVRREIAETIALYDWQ-CGFVECSA 193 (253)
Q Consensus 129 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~-------------~~~~~~~~~~~~~~~~~-~~~~~~Sa 193 (253)
||++++.||+.+ ..|+..+.... +.+|+++|+||+|+.. ..+..+.++.+++ ..+ .++++|||
T Consensus 80 fdit~~~Sf~~~~~~w~~~i~~~~-~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~-~~~~~~~~E~SA 157 (178)
T cd04131 80 FDISRPETLDSVLKKWRGEIQEFC-PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAK-QLGAEIYLECSA 157 (178)
T ss_pred EECCChhhHHHHHHHHHHHHHHHC-CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHH-HhCCCEEEECcc
Confidence 999999999995 78998887754 6799999999999864 1477888999998 455 48999999
Q ss_pred CCCCC-HHHHHHHHHHHHH
Q psy549 194 KENYN-IVQVFKELLAQAK 211 (253)
Q Consensus 194 ~~~~~-i~~l~~~l~~~~~ 211 (253)
++|.+ |+++|..+++.+.
T Consensus 158 ~~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 158 FTSEKSVRDIFHVATMACL 176 (178)
T ss_pred CcCCcCHHHHHHHHHHHHh
Confidence 99995 9999999998653
No 22
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=100.00 E-value=1.7e-31 Score=212.40 Aligned_cols=163 Identities=26% Similarity=0.340 Sum_probs=142.4
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEE
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLV 128 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 128 (253)
+||+|+|++|||||||+++|.++.+...+.+|.. +++...+.++++..+.+.|||++|++.+..++..+++++|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999999887777776 666777777555689999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcC---CCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHH
Q psy549 129 YAVDDASTWDVVKDLREQIVNKRG---LMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFK 204 (253)
Q Consensus 129 ~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 204 (253)
||++++++|+.+..|+..+..... .++|+++|+||+|+.+. .+..+....++. ..+++++++||++|.|++++|+
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~-~~~~~~~~iSAktg~gv~~lf~ 159 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQ-ANGMESCLVSAKTGDRVNLLFQ 159 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHH-HcCCEEEEEECCCCCCHHHHHH
Confidence 999999999999999998887542 35789999999999743 666777788887 4668899999999999999999
Q ss_pred HHHHHHHHh
Q psy549 205 ELLAQAKVQ 213 (253)
Q Consensus 205 ~l~~~~~~~ 213 (253)
++++.+...
T Consensus 160 ~l~~~l~~~ 168 (215)
T cd04109 160 QLAAELLGV 168 (215)
T ss_pred HHHHHHHhc
Confidence 999988764
No 23
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=1.8e-31 Score=204.00 Aligned_cols=161 Identities=28% Similarity=0.400 Sum_probs=140.8
Q ss_pred cceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEE
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVL 127 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 127 (253)
.+||+++|++|||||||+++|.++.+...+++|.. +.....+.+ ++..+.+.+||++|++++...+..+++++|++|+
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 80 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEV-NGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 80 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEE-CCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 37999999999999999999999998877777765 444455666 7778999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHHHH
Q psy549 128 VYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFKEL 206 (253)
Q Consensus 128 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 206 (253)
|||++++.+|+.+..|+..+.....++.|+++|+||+|+... .+..+.+..++. ..+.+++++||++|.|+.++|.++
T Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~e~Sa~~~~~i~e~f~~l 159 (166)
T cd04122 81 VYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFAD-ENGLLFLECSAKTGENVEDAFLET 159 (166)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHH-HcCCEEEEEECCCCCCHHHHHHHH
Confidence 999999999999999999887766677999999999999765 456677777777 567899999999999999999999
Q ss_pred HHHHH
Q psy549 207 LAQAK 211 (253)
Q Consensus 207 ~~~~~ 211 (253)
+..+.
T Consensus 160 ~~~~~ 164 (166)
T cd04122 160 AKKIY 164 (166)
T ss_pred HHHHh
Confidence 98774
No 24
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=2.5e-31 Score=210.78 Aligned_cols=158 Identities=25% Similarity=0.314 Sum_probs=132.1
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEE
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLV 128 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 128 (253)
+||+|+|.+|||||||+++|+.+.+.. +.+|.. +..... ...+.+.+||++|++.|..++..+++.+|++|+|
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~-----~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV 74 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQ-----WGPYNISIWDTAGREQFHGLGSMYCRGAAAVILT 74 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEE-----eeEEEEEEEeCCCcccchhhHHHHhccCCEEEEE
Confidence 589999999999999999999999864 344443 322221 2357899999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCC--------------------ccccHHHHHHHHHhcC----
Q psy549 129 YAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEF--------------------KDVRREIAETIALYDW---- 184 (253)
Q Consensus 129 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~--------------------~~~~~~~~~~~~~~~~---- 184 (253)
||++++.+|..+..|+..+......++|+++|+||+|+.+ ..+..+.+..+++...
T Consensus 75 ~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~ 154 (220)
T cd04126 75 YDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKM 154 (220)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCcccc
Confidence 9999999999999988887776556799999999999865 2666778888887433
Q ss_pred ---------CCcEEEeccCCCCCHHHHHHHHHHHHHHh
Q psy549 185 ---------QCGFVECSAKENYNIVQVFKELLAQAKVQ 213 (253)
Q Consensus 185 ---------~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 213 (253)
.++|++|||++|.||+++|..+++.+...
T Consensus 155 ~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~ 192 (220)
T cd04126 155 LDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPL 192 (220)
T ss_pred ccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHH
Confidence 16899999999999999999999988654
No 25
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=1.8e-31 Score=203.53 Aligned_cols=161 Identities=41% Similarity=0.714 Sum_probs=140.8
Q ss_pred cceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEE
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLV 128 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 128 (253)
++||+++|++|||||||++++..+.+...+.+|+.+.+...+.+ ++..+.+++||++|++++..++..+++++|++++|
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEV-DGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV 79 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEE-CCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence 47999999999999999999999988888888888777777777 77788999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHh-cCCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHHHH
Q psy549 129 YAVDDASTWDVVKDLREQIVNK-RGLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFKEL 206 (253)
Q Consensus 129 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 206 (253)
||+++..+|+.+..|+..+... ...++|+++|+||+|+.+. ....+..+.+++ ..+++++++||++|.|+.++|.++
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~~~~~~l 158 (164)
T cd04175 80 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLAR-QWGCAFLETSAKAKINVNEIFYDL 158 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHH-HhCCEEEEeeCCCCCCHHHHHHHH
Confidence 9999999999999999888764 3467999999999999765 445555666765 566899999999999999999999
Q ss_pred HHHHH
Q psy549 207 LAQAK 211 (253)
Q Consensus 207 ~~~~~ 211 (253)
++.+.
T Consensus 159 ~~~l~ 163 (164)
T cd04175 159 VRQIN 163 (164)
T ss_pred HHHhh
Confidence 98764
No 26
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=2.1e-31 Score=202.74 Aligned_cols=160 Identities=44% Similarity=0.729 Sum_probs=139.5
Q ss_pred cceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEE
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLV 128 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 128 (253)
.+||+|+|++|||||||++++..+.+...+.+|+.+.+...+.+ ++..+.+++||++|+++|..++..+++++|++++|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 79 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEV-DGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEE-CCEEEEEEEEECCCccccchHHHHHhhcCCEEEEE
Confidence 37999999999999999999999998887888877777777777 77788999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHHHH
Q psy549 129 YAVDDASTWDVVKDLREQIVNKR-GLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFKEL 206 (253)
Q Consensus 129 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 206 (253)
||++++.+|+.+..|+..+.... ..++|+++|+||+|+.+. .+..+....++. .++.+++++||++|.|+.++|+++
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~~l~~~l 158 (163)
T cd04136 80 YSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALAR-QWGCPFYETSAKSKINVDEVFADL 158 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHH-HcCCeEEEecCCCCCCHHHHHHHH
Confidence 99999999999999998887743 357999999999998654 455556666766 456899999999999999999999
Q ss_pred HHHH
Q psy549 207 LAQA 210 (253)
Q Consensus 207 ~~~~ 210 (253)
++.+
T Consensus 159 ~~~~ 162 (163)
T cd04136 159 VRQI 162 (163)
T ss_pred HHhc
Confidence 8765
No 27
>KOG0091|consensus
Probab=100.00 E-value=1e-31 Score=194.16 Aligned_cols=168 Identities=26% Similarity=0.377 Sum_probs=151.0
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEE
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFV 126 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 126 (253)
..++.++||++-+|||+|+++|..+++..-..+|.+ +++...+.+.+|..+++++|||+|+++|++.+..+|++.-+++
T Consensus 7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvl 86 (213)
T KOG0091|consen 7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVL 86 (213)
T ss_pred EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceE
Confidence 457999999999999999999999999776667766 8888888888899999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcC-CC-CCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHH
Q psy549 127 LVYAVDDASTWDVVKDLREQIVNKRG-LM-VPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVF 203 (253)
Q Consensus 127 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~-~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 203 (253)
+|||+++.+||+.++.|..+...... |. +-+.+|++|+||... ++..+.++.++. .+++.++|||+++|.|+++.|
T Consensus 87 lvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa-~hgM~FVETSak~g~NVeEAF 165 (213)
T KOG0091|consen 87 LVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAA-SHGMAFVETSAKNGCNVEEAF 165 (213)
T ss_pred EEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHH-hcCceEEEecccCCCcHHHHH
Confidence 99999999999999999988777544 44 455789999999877 899999999999 899999999999999999999
Q ss_pred HHHHHHHHHhccc
Q psy549 204 KELLAQAKVQYNL 216 (253)
Q Consensus 204 ~~l~~~~~~~~~~ 216 (253)
+.+.+.+......
T Consensus 166 ~mlaqeIf~~i~q 178 (213)
T KOG0091|consen 166 DMLAQEIFQAIQQ 178 (213)
T ss_pred HHHHHHHHHHHhc
Confidence 9999988776443
No 28
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=3.7e-31 Score=206.47 Aligned_cols=165 Identities=33% Similarity=0.589 Sum_probs=143.0
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEE
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFV 126 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 126 (253)
...+||+|+|++|||||||+++|.++.+...+.+|....+...+.+ ++..+.+++|||+|+++|..++..+++.+|+++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~ii 81 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVI-DEETCLLDILDTAGQEEYSAMRDQYMRTGQGFL 81 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEE-CCEEEEEEEEeCCCCccchhhHHHHhhcCCEEE
Confidence 3469999999999999999999999998877878877777777777 777889999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHH
Q psy549 127 LVYAVDDASTWDVVKDLREQIVNKR-GLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFK 204 (253)
Q Consensus 127 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 204 (253)
+|||++++.+|+.+..|+..+.... ..++|+++|+||+|+... .+..+.+..++. ..+.+++++||++|.|+.++|.
T Consensus 82 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~-~~~~~~~e~Sak~~~gi~~~~~ 160 (189)
T PTZ00369 82 CVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAK-SFGIPFLETSAKQRVNVDEAFY 160 (189)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHH-HhCCEEEEeeCCCCCCHHHHHH
Confidence 9999999999999999998887643 357899999999998654 455556666665 4567899999999999999999
Q ss_pred HHHHHHHHh
Q psy549 205 ELLAQAKVQ 213 (253)
Q Consensus 205 ~l~~~~~~~ 213 (253)
+|++.+...
T Consensus 161 ~l~~~l~~~ 169 (189)
T PTZ00369 161 ELVREIRKY 169 (189)
T ss_pred HHHHHHHHH
Confidence 999988654
No 29
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=2.7e-31 Score=204.64 Aligned_cols=159 Identities=27% Similarity=0.427 Sum_probs=137.6
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEEE
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLVY 129 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 129 (253)
+||+++|++|||||||+++|.++.+...+.+|....+...+.+ ++..+.+.+||++|+++|..++..+++++|++|+||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~ 80 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMI-GGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 80 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEE-CCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence 6999999999999999999999999888888888777667777 778899999999999999999999999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHHhcCCCCCEEEEEecCCCCCc-------------cccHHHHHHHHHhcCCCcEEEeccCC
Q psy549 130 AVDDASTWDVVK-DLREQIVNKRGLMVPIVVVGNKCELEFK-------------DVRREIAETIALYDWQCGFVECSAKE 195 (253)
Q Consensus 130 d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~-------------~~~~~~~~~~~~~~~~~~~~~~Sa~~ 195 (253)
|++++.+|+.+. .|+..+.... +++|+++|+||+|+... .+..+.++.+++....+.+++|||++
T Consensus 81 d~~~~~s~~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~t 159 (175)
T cd01874 81 SVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALT 159 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCC
Confidence 999999999986 4877766543 57999999999998653 35566677777744457899999999
Q ss_pred CCCHHHHHHHHHHHH
Q psy549 196 NYNIVQVFKELLAQA 210 (253)
Q Consensus 196 ~~~i~~l~~~l~~~~ 210 (253)
|.|++++|+.+++.+
T Consensus 160 g~~v~~~f~~~~~~~ 174 (175)
T cd01874 160 QKGLKNVFDEAILAA 174 (175)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998854
No 30
>KOG0080|consensus
Probab=100.00 E-value=1.9e-31 Score=192.23 Aligned_cols=166 Identities=27% Similarity=0.378 Sum_probs=151.7
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCE
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADA 124 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 124 (253)
....+||++||++|+|||+|+-+|..+.|....+.|++ ++..+.+.+ +|..+++.||||+|+++|+.+++.+|+++.+
T Consensus 8 ~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~v-dg~~~KlaiWDTAGqErFRtLTpSyyRgaqG 86 (209)
T KOG0080|consen 8 YDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQV-DGKRLKLAIWDTAGQERFRTLTPSYYRGAQG 86 (209)
T ss_pred cceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEE-cCceEEEEEEeccchHhhhccCHhHhccCce
Confidence 45669999999999999999999999999887777776 888888898 9999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHH
Q psy549 125 FVLVYAVDDASTWDVVKDLREQIVNKRG-LMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQV 202 (253)
Q Consensus 125 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 202 (253)
+|+|||++.+++|..+..|+.++..+.. +++-.++|+||+|..+. .+..+....+++ ...+-++++||++..++...
T Consensus 87 iIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr-~h~~LFiE~SAkt~~~V~~~ 165 (209)
T KOG0080|consen 87 IILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFAR-KHRCLFIECSAKTRENVQCC 165 (209)
T ss_pred eEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHH-hhCcEEEEcchhhhccHHHH
Confidence 9999999999999999999999988643 56788999999998754 888899999999 78888999999999999999
Q ss_pred HHHHHHHHHHh
Q psy549 203 FKELLAQAKVQ 213 (253)
Q Consensus 203 ~~~l~~~~~~~ 213 (253)
|+.++..+.+.
T Consensus 166 FeelveKIi~t 176 (209)
T KOG0080|consen 166 FEELVEKIIET 176 (209)
T ss_pred HHHHHHHHhcC
Confidence 99999999765
No 31
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=100.00 E-value=1.2e-30 Score=205.27 Aligned_cols=164 Identities=26% Similarity=0.340 Sum_probs=140.5
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEE
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFV 126 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 126 (253)
..++|+|+|++|||||||+++|.+..+...+.+|.. +.....+.+ ++..+.+.|||+||++.+..++..+++++++++
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii 83 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEI-NGERVKLQIWDTAGQERFRTITSTYYRGTHGVI 83 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEE-CCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence 468999999999999999999999988766666665 445556666 677789999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHHH
Q psy549 127 LVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFKE 205 (253)
Q Consensus 127 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 205 (253)
+|||++++.+|..+..|+..+.... ..+|+++|+||+|+... .+..+.+..++. ..+.+++++|+++|.||+++|++
T Consensus 84 lv~D~~~~~s~~~~~~~~~~i~~~~-~~~piivVgNK~Dl~~~~~~~~~~~~~~~~-~~~~~~~e~Sa~~~~gi~~lf~~ 161 (199)
T cd04110 84 VVYDVTNGESFVNVKRWLQEIEQNC-DDVCKVLVGNKNDDPERKVVETEDAYKFAG-QMGISLFETSAKENINVEEMFNC 161 (199)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccccCHHHHHHHHH-HcCCEEEEEECCCCcCHHHHHHH
Confidence 9999999999999999998876643 57899999999999765 455666677776 45688999999999999999999
Q ss_pred HHHHHHHhc
Q psy549 206 LLAQAKVQY 214 (253)
Q Consensus 206 l~~~~~~~~ 214 (253)
|.+.+....
T Consensus 162 l~~~~~~~~ 170 (199)
T cd04110 162 ITELVLRAK 170 (199)
T ss_pred HHHHHHHhh
Confidence 999987653
No 32
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1e-30 Score=203.90 Aligned_cols=162 Identities=27% Similarity=0.365 Sum_probs=140.4
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEE
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLV 128 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 128 (253)
+||+|+|++|||||||+++|.++.+...+.+|.. +.....+.+ ++..+.+++||++|.+++...+..+++++|++++|
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv 79 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYI-ENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLV 79 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEE-CCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEE
Confidence 5899999999999999999999998765666655 455566666 77789999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHHHHH
Q psy549 129 YAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELL 207 (253)
Q Consensus 129 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 207 (253)
||++++.+|..+..|+..+.......+|+++|+||+|+.+. .+..+.+..++. ..+++++++||++|.|++++|.+++
T Consensus 80 ~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~-~~~~~~~evSa~~~~~i~~~f~~l~ 158 (188)
T cd04125 80 YDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCD-SLNIPFFETSAKQSINVEEAFILLV 158 (188)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHH-HcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 99999999999999999888766667899999999998754 556677777776 4567999999999999999999999
Q ss_pred HHHHHh
Q psy549 208 AQAKVQ 213 (253)
Q Consensus 208 ~~~~~~ 213 (253)
+.+...
T Consensus 159 ~~~~~~ 164 (188)
T cd04125 159 KLIIKR 164 (188)
T ss_pred HHHHHH
Confidence 998654
No 33
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=5.4e-31 Score=200.40 Aligned_cols=158 Identities=24% Similarity=0.396 Sum_probs=139.3
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEE
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLV 128 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 128 (253)
++|+++|++|+|||||+++|+++.+...+.+|.. +.....+.+ ++..+.+++||++|++++..++..+++.+|++++|
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEV-DGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLV 79 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEE-CCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEE
Confidence 5899999999999999999999998777766665 455567777 67788999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHHHHH
Q psy549 129 YAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELL 207 (253)
Q Consensus 129 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 207 (253)
||++++.+|+.+..|+..+......++|+++|+||.|+... .+..+.+..+++ .++.++++|||++|.|++++|.+|+
T Consensus 80 ~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~-~~~~~~~e~Sa~~~~~v~~~f~~l~ 158 (161)
T cd04117 80 YDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAK-EYGMDFFETSACTNSNIKESFTRLT 158 (161)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHH-HcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 99999999999999999887765557999999999999765 566778888887 5678999999999999999999998
Q ss_pred HH
Q psy549 208 AQ 209 (253)
Q Consensus 208 ~~ 209 (253)
+.
T Consensus 159 ~~ 160 (161)
T cd04117 159 EL 160 (161)
T ss_pred hh
Confidence 64
No 34
>KOG0093|consensus
Probab=100.00 E-value=2.2e-31 Score=189.15 Aligned_cols=171 Identities=25% Similarity=0.376 Sum_probs=153.1
Q ss_pred CCCCCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhccc
Q psy549 43 VGLQKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121 (253)
Q Consensus 43 ~~~~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~ 121 (253)
.+.....+|+.|+|++.+|||+|+.++.++.|...+..|.+ ++..+++.- ..+.+++++|||+|+++|+.++..+|++
T Consensus 15 dqnFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr-~~kRiklQiwDTagqEryrtiTTayyRg 93 (193)
T KOG0093|consen 15 DQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYR-SDKRIKLQIWDTAGQERYRTITTAYYRG 93 (193)
T ss_pred cccccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeee-cccEEEEEEEecccchhhhHHHHHHhhc
Confidence 34456678999999999999999999999999888888877 655555554 6678999999999999999999999999
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHH
Q psy549 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIV 200 (253)
Q Consensus 122 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 200 (253)
++++|++||+++.+||..+..|...+....-.+.|+++|+||||+.+. .+..+....+++ ..+..+||+||+.+.|++
T Consensus 94 amgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~-~LGfefFEtSaK~NinVk 172 (193)
T KOG0093|consen 94 AMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLAD-QLGFEFFETSAKENINVK 172 (193)
T ss_pred cceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHH-HhChHHhhhcccccccHH
Confidence 999999999999999999999999999888889999999999999887 777888899998 788899999999999999
Q ss_pred HHHHHHHHHHHHhcc
Q psy549 201 QVFKELLAQAKVQYN 215 (253)
Q Consensus 201 ~l~~~l~~~~~~~~~ 215 (253)
++|+.+...+-+.+.
T Consensus 173 ~~Fe~lv~~Ic~kms 187 (193)
T KOG0093|consen 173 QVFERLVDIICDKMS 187 (193)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999998876644
No 35
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=100.00 E-value=8.4e-31 Score=199.01 Aligned_cols=160 Identities=31% Similarity=0.570 Sum_probs=139.9
Q ss_pred cceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEE
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLV 128 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 128 (253)
.+||+|+|++|||||||+++|.++.+...+.+|..+.+...+.+ ++..+.+++||++|++++..++..+++.+|++++|
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v 79 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 79 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEE-CCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence 37999999999999999999999998878888877777777777 77778899999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEecCCCCCccccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHHHHH
Q psy549 129 YAVDDASTWDVVKDLREQIVNKR-GLMVPIVVVGNKCELEFKDVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELL 207 (253)
Q Consensus 129 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 207 (253)
||+++..+|..+..|+..+.... ..++|+++|+||+|+............+.. ..+.+++++||++|.|++++|++++
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~l~~~l~ 158 (162)
T cd04138 80 FAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAK-SYGIPYIETSAKTRQGVEEAFYTLV 158 (162)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHH-HhCCeEEEecCCCCCCHHHHHHHHH
Confidence 99999999999999988887753 357899999999999876666666667766 5677999999999999999999998
Q ss_pred HHH
Q psy549 208 AQA 210 (253)
Q Consensus 208 ~~~ 210 (253)
+.+
T Consensus 159 ~~~ 161 (162)
T cd04138 159 REI 161 (162)
T ss_pred HHh
Confidence 754
No 36
>KOG0086|consensus
Probab=99.98 E-value=2.9e-31 Score=189.76 Aligned_cols=171 Identities=20% Similarity=0.286 Sum_probs=156.0
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCE
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADA 124 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 124 (253)
...-+|++++|+.|+|||+|+++|...+|..+...|.+ ++-...+.+ +++.++++||||+|+++|++....+|+++.+
T Consensus 6 YDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinV-GgK~vKLQIWDTAGQErFRSVtRsYYRGAAG 84 (214)
T KOG0086|consen 6 YDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNV-GGKTVKLQIWDTAGQERFRSVTRSYYRGAAG 84 (214)
T ss_pred hhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeee-cCcEEEEEEeecccHHHHHHHHHHHhccccc
Confidence 45678999999999999999999999999888878877 666667777 9999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHH
Q psy549 125 FVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVF 203 (253)
Q Consensus 125 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 203 (253)
+++|||++++++|+.+..|+..+.....+++.+++++||.|+.+. ++....+..++. ...+.++++|+++|.|++|.|
T Consensus 85 AlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~Faq-Enel~flETSa~TGeNVEEaF 163 (214)
T KOG0086|consen 85 ALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQ-ENELMFLETSALTGENVEEAF 163 (214)
T ss_pred eEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhc-ccceeeeeecccccccHHHHH
Confidence 999999999999999999999999999999999999999999887 888889999998 566789999999999999999
Q ss_pred HHHHHHHHHhcccCh
Q psy549 204 KELLAQAKVQYNLSP 218 (253)
Q Consensus 204 ~~l~~~~~~~~~~~~ 218 (253)
-...+.+..+....+
T Consensus 164 l~c~~tIl~kIE~GE 178 (214)
T KOG0086|consen 164 LKCARTILNKIESGE 178 (214)
T ss_pred HHHHHHHHHHHhhcC
Confidence 999998888766554
No 37
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.98 E-value=7.4e-31 Score=202.02 Aligned_cols=159 Identities=23% Similarity=0.391 Sum_probs=137.9
Q ss_pred cceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEE
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLV 128 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 128 (253)
.+||+|+|++|||||||+.+++++.+...+.+|..+.+...+.+ ++..+.+++|||+|++.|..++..+++++|++|+|
T Consensus 1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (174)
T cd01871 1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 79 (174)
T ss_pred CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEE-CCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEE
Confidence 37999999999999999999999999888888887777767777 88889999999999999999999999999999999
Q ss_pred EECCChhhHHHHH-HHHHHHHHhcCCCCCEEEEEecCCCCCc-------------cccHHHHHHHHHhcCCCcEEEeccC
Q psy549 129 YAVDDASTWDVVK-DLREQIVNKRGLMVPIVVVGNKCELEFK-------------DVRREIAETIALYDWQCGFVECSAK 194 (253)
Q Consensus 129 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~-------------~~~~~~~~~~~~~~~~~~~~~~Sa~ 194 (253)
||++++++|..+. .|+..+.... +++|+++|+||+|+.+. .+..+.+..+++..+.+++++|||+
T Consensus 80 ~d~~~~~sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 158 (174)
T cd01871 80 FSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 158 (174)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccc
Confidence 9999999999985 5777666543 57999999999998642 3667778888885554699999999
Q ss_pred CCCCHHHHHHHHHHH
Q psy549 195 ENYNIVQVFKELLAQ 209 (253)
Q Consensus 195 ~~~~i~~l~~~l~~~ 209 (253)
+|.|++++|+.+++.
T Consensus 159 ~~~~i~~~f~~l~~~ 173 (174)
T cd01871 159 TQKGLKTVFDEAIRA 173 (174)
T ss_pred ccCCHHHHHHHHHHh
Confidence 999999999998864
No 38
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.98 E-value=8.3e-31 Score=199.65 Aligned_cols=160 Identities=38% Similarity=0.668 Sum_probs=138.7
Q ss_pred cceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEE
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLV 128 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 128 (253)
++||+++|++|+|||||++++.++.+...+.+|..+.+...+.+ ++..+.++|||++|+++|..++..+++++|++++|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 79 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEV-DSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEE-CCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence 47999999999999999999999999877777777777777887 77888999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHHHH
Q psy549 129 YAVDDASTWDVVKDLREQIVNKR-GLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFKEL 206 (253)
Q Consensus 129 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 206 (253)
||++++.+|..+..|+..+.... ..++|+++|+||+|+... .+.......++. ..+++++++||+++.|+.++|.++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~~l~~~l 158 (163)
T cd04176 80 YSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAE-EWGCPFMETSAKSKTMVNELFAEI 158 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHH-HhCCEEEEecCCCCCCHHHHHHHH
Confidence 99999999999999988887743 357999999999998654 444555666665 456799999999999999999999
Q ss_pred HHHH
Q psy549 207 LAQA 210 (253)
Q Consensus 207 ~~~~ 210 (253)
++.+
T Consensus 159 ~~~l 162 (163)
T cd04176 159 VRQM 162 (163)
T ss_pred HHhc
Confidence 8754
No 39
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.98 E-value=1.3e-30 Score=199.42 Aligned_cols=163 Identities=29% Similarity=0.464 Sum_probs=141.1
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEE
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFV 126 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 126 (253)
..+||+++|++|+|||||+++|.++.+...+.++.. +.....+.+ ++..+.+++||++|++.+...+..+++++|+++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i 80 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIEL-DGKKIKLQIWDTAGQERFRTITTAYYRGAMGII 80 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEE-CCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEE
Confidence 358999999999999999999999998777776666 444556666 667789999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHHH
Q psy549 127 LVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFKE 205 (253)
Q Consensus 127 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 205 (253)
+|||++++.+|..+..|+..+......++|+++|+||+|+.+. .+..+.+..++. ..+.+++++||++|.|++++|.+
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~~~~~~ 159 (167)
T cd01867 81 LVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALAD-EYGIKFLETSAKANINVEEAFFT 159 (167)
T ss_pred EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHH-HcCCEEEEEeCCCCCCHHHHHHH
Confidence 9999999999999999999888766567999999999999854 456666777776 56789999999999999999999
Q ss_pred HHHHHHH
Q psy549 206 LLAQAKV 212 (253)
Q Consensus 206 l~~~~~~ 212 (253)
+++.+..
T Consensus 160 i~~~~~~ 166 (167)
T cd01867 160 LAKDIKK 166 (167)
T ss_pred HHHHHHh
Confidence 9998853
No 40
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.98 E-value=1.7e-30 Score=203.08 Aligned_cols=162 Identities=25% Similarity=0.443 Sum_probs=138.8
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCCCC-CCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEE
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDRFI-SRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVL 127 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~~~-~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 127 (253)
+||+++|++|||||||+++|.++.+. ..+.+|+. +.....+.+ ++..+.+.|||+||++++...+..+++.+|++|+
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~ 79 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTV-DGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLL 79 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEE-CCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEE
Confidence 58999999999999999999998874 35556665 444445666 7778999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHHHH
Q psy549 128 VYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFKEL 206 (253)
Q Consensus 128 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 206 (253)
|||+++..+|+.+..|+..+.......+|+++|+||+|+... .+..+..+.+.. ..+.+++++||++|.|++++|.+|
T Consensus 80 v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~-~~~~~~~e~Sa~~~~~v~~l~~~l 158 (191)
T cd04112 80 LYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAK-EYGVPFMETSAKTGLNVELAFTAV 158 (191)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHH-HcCCeEEEEeCCCCCCHHHHHHHH
Confidence 999999999999999998888766567999999999999643 555566777776 567899999999999999999999
Q ss_pred HHHHHHh
Q psy549 207 LAQAKVQ 213 (253)
Q Consensus 207 ~~~~~~~ 213 (253)
++.+...
T Consensus 159 ~~~~~~~ 165 (191)
T cd04112 159 AKELKHR 165 (191)
T ss_pred HHHHHHh
Confidence 9998665
No 41
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.98 E-value=1.5e-30 Score=198.41 Aligned_cols=160 Identities=40% Similarity=0.694 Sum_probs=139.5
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEEE
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLVY 129 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 129 (253)
+||+|+|++|||||||+++|.++.+...+.++..+.+...+.+ ++..+.+.+||+||++++..++..+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEI-DGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEE-CCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence 5899999999999999999999998877778877777777777 777899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHh-cCCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHHHHH
Q psy549 130 AVDDASTWDVVKDLREQIVNK-RGLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELL 207 (253)
Q Consensus 130 d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 207 (253)
|++++++|+.+..|+..+... ...++|+++|+||+|+... ....+....++. ..+.+++++||++|.|++++|++|+
T Consensus 80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~l~~~l~ 158 (164)
T smart00173 80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELAR-QWGCPFLETSAKERVNVDEAFYDLV 158 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHH-HcCCEEEEeecCCCCCHHHHHHHHH
Confidence 999999999999998887764 3346899999999999764 455566666766 4568999999999999999999999
Q ss_pred HHHH
Q psy549 208 AQAK 211 (253)
Q Consensus 208 ~~~~ 211 (253)
+.+.
T Consensus 159 ~~~~ 162 (164)
T smart00173 159 REIR 162 (164)
T ss_pred HHHh
Confidence 8764
No 42
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.98 E-value=1.3e-30 Score=207.53 Aligned_cols=165 Identities=21% Similarity=0.344 Sum_probs=141.7
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCE
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADA 124 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 124 (253)
....+||+++|++|||||||+++++.+.+...+.+|.+ +.....+.. ++..+.+.+||++|+++|..++..+++++|+
T Consensus 10 ~~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 88 (219)
T PLN03071 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (219)
T ss_pred CCCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEE-CCeEEEEEEEECCCchhhhhhhHHHcccccE
Confidence 46779999999999999999999999998877777775 555556666 6667899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHH
Q psy549 125 FVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIALYDWQCGFVECSAKENYNIVQVFK 204 (253)
Q Consensus 125 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 204 (253)
+|+|||++++.+|..+..|+..+.... .++|+++|+||+|+....+..+.. .+.. ..++++++|||++|.|+.++|.
T Consensus 89 ~ilvfD~~~~~s~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~~~v~~~~~-~~~~-~~~~~~~e~SAk~~~~i~~~f~ 165 (219)
T PLN03071 89 AIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQV-TFHR-KKNLQYYEISAKSNYNFEKPFL 165 (219)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEEchhhhhccCCHHHH-HHHH-hcCCEEEEcCCCCCCCHHHHHH
Confidence 999999999999999999999887654 679999999999997655555444 4555 5678899999999999999999
Q ss_pred HHHHHHHHhc
Q psy549 205 ELLAQAKVQY 214 (253)
Q Consensus 205 ~l~~~~~~~~ 214 (253)
+|++.+....
T Consensus 166 ~l~~~~~~~~ 175 (219)
T PLN03071 166 YLARKLAGDP 175 (219)
T ss_pred HHHHHHHcCc
Confidence 9999986553
No 43
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.98 E-value=1.8e-30 Score=202.33 Aligned_cols=163 Identities=28% Similarity=0.433 Sum_probs=138.2
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEEE
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLVY 129 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 129 (253)
+||+|+|++|||||||+++|.++.+...+.++....+...+...++..+.+.+|||+|++++..++..+++.+|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 80 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY 80 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence 58999999999999999999999998888777776666666664477889999999999999999999999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHHhcCCCCCEEEEEecCCCCCc-----cccHHHHHHHHHhcCCC-cEEEeccCCCCCHHHH
Q psy549 130 AVDDASTWDVVK-DLREQIVNKRGLMVPIVVVGNKCELEFK-----DVRREIAETIALYDWQC-GFVECSAKENYNIVQV 202 (253)
Q Consensus 130 d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~-----~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l 202 (253)
|++++.+|+.+. .|+..+... .+++|+++|+||+|+... .+..+.++.++. ..+. +++++||++|.|+.++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~-~~~~~~~~e~Sa~~~~~v~~~ 158 (187)
T cd04132 81 AVDNPTSLDNVEDKWFPEVNHF-CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAK-KQGAFAYLECSAKTMENVEEV 158 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHH-HcCCcEEEEccCCCCCCHHHH
Confidence 999999999986 477666543 367999999999998653 355667777777 4445 8999999999999999
Q ss_pred HHHHHHHHHHhc
Q psy549 203 FKELLAQAKVQY 214 (253)
Q Consensus 203 ~~~l~~~~~~~~ 214 (253)
|..+++.+....
T Consensus 159 f~~l~~~~~~~~ 170 (187)
T cd04132 159 FDTAIEEALKKE 170 (187)
T ss_pred HHHHHHHHHhhh
Confidence 999999986553
No 44
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.98 E-value=4.3e-30 Score=203.57 Aligned_cols=166 Identities=27% Similarity=0.436 Sum_probs=142.7
Q ss_pred cceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEE
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVL 127 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 127 (253)
.+||+|+|++|||||||+++|.++.+...+.+|.. ++....+.+.++..+.+++||++|++++..++..+++++|++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 48999999999999999999999988766655554 66666676656778999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHHH
Q psy549 128 VYAVDDASTWDVVKDLREQIVNKRG-LMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFKE 205 (253)
Q Consensus 128 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 205 (253)
|||++++.+|+.+..|+..+..... ..+|+++|+||+|+... .+..+....+++ ..+++++++||++|.|++++|++
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~-~~~~~~~e~Sak~g~~v~e~f~~ 160 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAK-DLGMKYIETSARTGDNVEEAFEL 160 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHH-HhCCEEEEEeCCCCCCHHHHHHH
Confidence 9999999999999999998876543 35788999999998764 566777788887 56689999999999999999999
Q ss_pred HHHHHHHhcc
Q psy549 206 LLAQAKVQYN 215 (253)
Q Consensus 206 l~~~~~~~~~ 215 (253)
|++.+.+..+
T Consensus 161 l~~~~~~~~~ 170 (211)
T cd04111 161 LTQEIYERIK 170 (211)
T ss_pred HHHHHHHHhh
Confidence 9998877644
No 45
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.98 E-value=1.9e-30 Score=198.33 Aligned_cols=161 Identities=29% Similarity=0.439 Sum_probs=140.2
Q ss_pred cceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEE
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVL 127 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 127 (253)
.+||+|+|++|||||||+++|.++.+...+.++.. +.....+.+ ++..+.+++||+||++++..++..+++++|++++
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~ 80 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII 80 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEE
Confidence 37999999999999999999999888666655554 555566777 7778899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHHHH
Q psy549 128 VYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFKEL 206 (253)
Q Consensus 128 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 206 (253)
|||++++++|..+..|+..+......++|+++|+||+|+... .+..+.+..++. ..+++++++||++|.|++++|.+|
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~~~~~~i 159 (166)
T cd01869 81 VYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFAD-ELGIPFLETSAKNATNVEQAFMTM 159 (166)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHH-HcCCeEEEEECCCCcCHHHHHHHH
Confidence 999999999999999999887765567999999999998655 566677777777 567899999999999999999999
Q ss_pred HHHHH
Q psy549 207 LAQAK 211 (253)
Q Consensus 207 ~~~~~ 211 (253)
++.+.
T Consensus 160 ~~~~~ 164 (166)
T cd01869 160 AREIK 164 (166)
T ss_pred HHHHH
Confidence 98874
No 46
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.98 E-value=1.4e-30 Score=201.71 Aligned_cols=160 Identities=23% Similarity=0.391 Sum_probs=136.4
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEE
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLV 128 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 128 (253)
+||+++|+.|||||||+++|.++.+...+.+|.. +.....+.+ ++..+.+++||++|+++|..++..+++++|++++|
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~-~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv 79 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISI-RGTEITFSIWDLGGQREFINMLPLVCNDAVAILFM 79 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEE-CCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEE
Confidence 5899999999999999999999999887888876 555567777 77889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc------cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHH
Q psy549 129 YAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK------DVRREIAETIALYDWQCGFVECSAKENYNIVQV 202 (253)
Q Consensus 129 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 202 (253)
||++++.+|+.+..|+..+.......+| ++|+||+|+... ....+.++.+++ ..+.++++|||++|.|++++
T Consensus 80 ~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~-~~~~~~~e~SAk~g~~v~~l 157 (182)
T cd04128 80 FDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAK-AMKAPLIFCSTSHSINVQKI 157 (182)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHH-HcCCEEEEEeCCCCCCHHHH
Confidence 9999999999999999988776545566 678999998532 122345566766 45689999999999999999
Q ss_pred HHHHHHHHHH
Q psy549 203 FKELLAQAKV 212 (253)
Q Consensus 203 ~~~l~~~~~~ 212 (253)
|+++++.+..
T Consensus 158 f~~l~~~l~~ 167 (182)
T cd04128 158 FKIVLAKAFD 167 (182)
T ss_pred HHHHHHHHHh
Confidence 9999998865
No 47
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.98 E-value=2.1e-30 Score=197.97 Aligned_cols=160 Identities=28% Similarity=0.435 Sum_probs=137.0
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEE
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLV 128 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 128 (253)
+||+|+|++|||||||+++|.++.+...+.+|.. +.....+.. ++..+.+++||++|++++..++..+++++|++++|
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v 80 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFR-NDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILM 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEE-CCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEE
Confidence 7999999999999999999999998777666665 333444555 67778999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHHHHH
Q psy549 129 YAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELL 207 (253)
Q Consensus 129 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 207 (253)
||+++..+|+.+..|+..+.......+|+++|+||+|+... ....+.+..++. ..+.+++++||++|.|+.++|++|+
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gv~~l~~~l~ 159 (165)
T cd01865 81 YDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLAD-QLGFEFFEASAKENINVKQVFERLV 159 (165)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHH-HcCCEEEEEECCCCCCHHHHHHHHH
Confidence 99999999999999999887766567999999999999765 445566666766 5667899999999999999999999
Q ss_pred HHHH
Q psy549 208 AQAK 211 (253)
Q Consensus 208 ~~~~ 211 (253)
+.+.
T Consensus 160 ~~~~ 163 (165)
T cd01865 160 DIIC 163 (165)
T ss_pred HHHH
Confidence 8764
No 48
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.97 E-value=2.6e-30 Score=196.69 Aligned_cols=159 Identities=31% Similarity=0.542 Sum_probs=146.4
Q ss_pred eEEEECCCCCCHHHHHHHHHhCCCCCCccccc-eeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEEE
Q psy549 51 RVVVMGGARVGKSSIISQFLYDRFISRYKETV-EELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLVY 129 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 129 (253)
||+++|+++||||||+++|.++.+...+.+|. .+.....+.+ ++..+.+++||++|+++|..+...+++++|++|+||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~f 79 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSI-DGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVF 79 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEE-TTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999988888887 5788888888 788999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCC-ccccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHHHHHH
Q psy549 130 AVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEF-KDVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLA 208 (253)
Q Consensus 130 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 208 (253)
|++++.||+.+..|+..+......++|+++|+||.|+.. ..+..+.++.++. ..+.+++++|++++.||.++|..+++
T Consensus 80 d~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~-~~~~~~~e~Sa~~~~~v~~~f~~~i~ 158 (162)
T PF00071_consen 80 DVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAK-ELGVPYFEVSAKNGENVKEIFQELIR 158 (162)
T ss_dssp ETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHH-HTTSEEEEEBTTTTTTHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHH-HhCCEEEEEECCCCCCHHHHHHHHHH
Confidence 999999999999999999988766799999999999986 4788888899998 55599999999999999999999999
Q ss_pred HHH
Q psy549 209 QAK 211 (253)
Q Consensus 209 ~~~ 211 (253)
.+.
T Consensus 159 ~i~ 161 (162)
T PF00071_consen 159 KIL 161 (162)
T ss_dssp HHH
T ss_pred HHh
Confidence 874
No 49
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.97 E-value=3.9e-30 Score=196.43 Aligned_cols=158 Identities=40% Similarity=0.631 Sum_probs=135.9
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEEE
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLVY 129 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 129 (253)
+||+++|++|||||||+++++++.+...+.++....+...+.. +...+.+.+||++|++++..++..+++.+|++++||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISC-SKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEE-CCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 7999999999999999999999998777777777666666666 667789999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhc---CCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHHH
Q psy549 130 AVDDASTWDVVKDLREQIVNKR---GLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFKE 205 (253)
Q Consensus 130 d~~~~~s~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 205 (253)
|++++.+|+.+..|+..+.... ..++|+++|+||+|+... .+..+.+..++. .+.++++++||++|.|++++|++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-~~~~~~~e~SA~~g~~v~~~f~~ 159 (165)
T cd04140 81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACAT-EWNCAFMETSAKTNHNVQELFQE 159 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHH-HhCCcEEEeecCCCCCHHHHHHH
Confidence 9999999999999988776643 256999999999999763 555666666766 56788999999999999999999
Q ss_pred HHHH
Q psy549 206 LLAQ 209 (253)
Q Consensus 206 l~~~ 209 (253)
|+..
T Consensus 160 l~~~ 163 (165)
T cd04140 160 LLNL 163 (165)
T ss_pred HHhc
Confidence 8754
No 50
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.97 E-value=5.7e-30 Score=195.07 Aligned_cols=160 Identities=35% Similarity=0.602 Sum_probs=138.5
Q ss_pred cceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEE
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLV 128 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 128 (253)
.+||+++|++|+|||||+++++++.+...+.++..+.+...+.+ ++..+.+++|||||++++..++..+++.+|++++|
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEI-DGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEE-CCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 47999999999999999999999988777777777666666777 77788999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHh-cCCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHHHH
Q psy549 129 YAVDDASTWDVVKDLREQIVNK-RGLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFKEL 206 (253)
Q Consensus 129 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 206 (253)
||+++..+|+.+..|+..+... ...++|+++|+||+|+... .+..+....++. ..+.+++++||++|.|+.++|+++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~l~~~l 159 (164)
T cd04145 81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELAR-KLKIPYIETSAKDRLNVDKAFHDL 159 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHH-HcCCcEEEeeCCCCCCHHHHHHHH
Confidence 9999999999999999888764 3457899999999999765 345556666666 456799999999999999999999
Q ss_pred HHHH
Q psy549 207 LAQA 210 (253)
Q Consensus 207 ~~~~ 210 (253)
++.+
T Consensus 160 ~~~~ 163 (164)
T cd04145 160 VRVI 163 (164)
T ss_pred HHhh
Confidence 8765
No 51
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.97 E-value=2.9e-30 Score=201.38 Aligned_cols=160 Identities=29% Similarity=0.411 Sum_probs=135.8
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEEE
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLVY 129 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 129 (253)
.||+|+|++|||||||+++|.++.+...+.+|....+...+.+ ++..+.+.|||++|+++|..++..+++.+|++|+||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~-~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~ 79 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFV-DGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF 79 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEE-CCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence 3899999999999999999999999877777777666666666 777889999999999999999989999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHHhcCCCCCEEEEEecCCCCCcc-------------ccHHHHHHHHHhcCCCcEEEeccCC
Q psy549 130 AVDDASTWDVVK-DLREQIVNKRGLMVPIVVVGNKCELEFKD-------------VRREIAETIALYDWQCGFVECSAKE 195 (253)
Q Consensus 130 d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~-------------~~~~~~~~~~~~~~~~~~~~~Sa~~ 195 (253)
|++++.+|+.+. .|+..+.... .+.|+++|+||+|+.... +..+.+..++.....+++++|||++
T Consensus 80 dv~~~~sf~~~~~~~~~~i~~~~-~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~ 158 (189)
T cd04134 80 SVDSPDSLENVESKWLGEIREHC-PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKL 158 (189)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCc
Confidence 999999999886 5877776543 579999999999987642 3344556666644557899999999
Q ss_pred CCCHHHHHHHHHHHHH
Q psy549 196 NYNIVQVFKELLAQAK 211 (253)
Q Consensus 196 ~~~i~~l~~~l~~~~~ 211 (253)
|.|++++|.++++.+.
T Consensus 159 ~~~v~e~f~~l~~~~~ 174 (189)
T cd04134 159 NRGVNEAFTEAARVAL 174 (189)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999999885
No 52
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.97 E-value=4.6e-30 Score=198.71 Aligned_cols=165 Identities=22% Similarity=0.366 Sum_probs=139.5
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCC---------CcEEEEEEEeCCCCCCChhhHHH
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPD---------GAQLTLDILDTSGAYQFPAMREL 117 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~---------~~~~~~~l~D~~g~~~~~~~~~~ 117 (253)
..+||+++|++|||||||++++.++.+...+.+|.. +.....+.+.. +..+.+.+||++|++++..++..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 458999999999999999999999988777766665 44444454421 45689999999999999999999
Q ss_pred hcccCCEEEEEEECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCC
Q psy549 118 SISTADAFVLVYAVDDASTWDVVKDLREQIVNKR-GLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKE 195 (253)
Q Consensus 118 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~ 195 (253)
+++++|++++|||++++.+|..+..|+..+.... ..++|+++|+||+|+.+. .+..+.+..++. ..+++++++||++
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~-~~~~~~~e~Sak~ 161 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALAD-KYGIPYFETSAAT 161 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHH-HcCCeEEEEeCCC
Confidence 9999999999999999999999999998887643 356899999999999764 566677788887 5678999999999
Q ss_pred CCCHHHHHHHHHHHHHHh
Q psy549 196 NYNIVQVFKELLAQAKVQ 213 (253)
Q Consensus 196 ~~~i~~l~~~l~~~~~~~ 213 (253)
|.|++++|++|++.+.++
T Consensus 162 ~~~v~~l~~~l~~~~~~~ 179 (180)
T cd04127 162 GTNVEKAVERLLDLVMKR 179 (180)
T ss_pred CCCHHHHHHHHHHHHHhh
Confidence 999999999999887543
No 53
>PLN03108 Rab family protein; Provisional
Probab=99.97 E-value=1.5e-29 Score=200.37 Aligned_cols=165 Identities=25% Similarity=0.365 Sum_probs=142.3
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEE
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFV 126 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 126 (253)
..+||+|+|++|||||||+++|.+..+...+.++.. ++....+.+ ++..+.+.+||++|++.+..++..+++.+|++|
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~-~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v 83 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI-DNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEE-CCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 458999999999999999999999888665555554 555566777 777889999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHHH
Q psy549 127 LVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFKE 205 (253)
Q Consensus 127 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 205 (253)
+|||+++..+|..+..|+..+.......+|+++|+||+|+.+. .+..+.++.++. ..+++++++|++++.|++++|.+
T Consensus 84 lv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~e~Sa~~~~~v~e~f~~ 162 (210)
T PLN03108 84 LVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAK-EHGLIFMEASAKTAQNVEEAFIK 162 (210)
T ss_pred EEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHH-HcCCEEEEEeCCCCCCHHHHHHH
Confidence 9999999999999999998887766667999999999999765 566677777777 56789999999999999999999
Q ss_pred HHHHHHHhc
Q psy549 206 LLAQAKVQY 214 (253)
Q Consensus 206 l~~~~~~~~ 214 (253)
+++.+.+..
T Consensus 163 l~~~~~~~~ 171 (210)
T PLN03108 163 TAAKIYKKI 171 (210)
T ss_pred HHHHHHHHh
Confidence 999887653
No 54
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.97 E-value=4.6e-30 Score=196.11 Aligned_cols=160 Identities=23% Similarity=0.375 Sum_probs=137.9
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEE
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLV 128 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 128 (253)
+||+++|++|||||||+++|+++.+...+.++.. +.....+.+ ++..+.+++||++|++++..++..+++.+|++|+|
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSV-RNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLV 79 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEE-CCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEE
Confidence 5899999999999999999999998777777665 444556666 67889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcC-----CCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHH
Q psy549 129 YAVDDASTWDVVKDLREQIVNKRG-----LMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQV 202 (253)
Q Consensus 129 ~d~~~~~s~~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 202 (253)
||++++.+|..+..|+..+..... .++|+++|+||+|+... ....+....++. ..+.+++++||+++.|+.++
T Consensus 80 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~l 158 (168)
T cd04119 80 YDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAE-SKGFKYFETSACTGEGVNEM 158 (168)
T ss_pred EECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHH-HcCCeEEEEECCCCCCHHHH
Confidence 999999999999999998887543 46899999999999743 556666666766 45688999999999999999
Q ss_pred HHHHHHHHH
Q psy549 203 FKELLAQAK 211 (253)
Q Consensus 203 ~~~l~~~~~ 211 (253)
|++|++.+.
T Consensus 159 ~~~l~~~l~ 167 (168)
T cd04119 159 FQTLFSSIV 167 (168)
T ss_pred HHHHHHHHh
Confidence 999998764
No 55
>KOG0088|consensus
Probab=99.97 E-value=6.2e-31 Score=189.11 Aligned_cols=167 Identities=26% Similarity=0.411 Sum_probs=153.1
Q ss_pred CCCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCC
Q psy549 45 LQKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTAD 123 (253)
Q Consensus 45 ~~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 123 (253)
.....+||+++|..-+|||+|+=+++.++|.....+|.. .+..+.+.+ ++....+.||||+|+++|..+.+.+|++.+
T Consensus 9 g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~-ed~ra~L~IWDTAGQErfHALGPIYYRgSn 87 (218)
T KOG0088|consen 9 GKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNV-EDCRADLHIWDTAGQERFHALGPIYYRGSN 87 (218)
T ss_pred CCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhccccc-ccceeeeeeeeccchHhhhccCceEEeCCC
Confidence 456789999999999999999999999999776666665 788888888 668899999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHH
Q psy549 124 AFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQV 202 (253)
Q Consensus 124 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 202 (253)
++++|||++|+.||+.+..|..++.......+.+++|+||+|+... ++..+.++.++. ..+..++++||+++.||.++
T Consensus 88 GalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAe-svGA~y~eTSAk~N~Gi~el 166 (218)
T KOG0088|consen 88 GALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAE-SVGALYMETSAKDNVGISEL 166 (218)
T ss_pred ceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHH-hhchhheecccccccCHHHH
Confidence 9999999999999999999999999988888999999999999876 888899999998 78889999999999999999
Q ss_pred HHHHHHHHHHh
Q psy549 203 FKELLAQAKVQ 213 (253)
Q Consensus 203 ~~~l~~~~~~~ 213 (253)
|..+...+.+.
T Consensus 167 Fe~Lt~~MiE~ 177 (218)
T KOG0088|consen 167 FESLTAKMIEH 177 (218)
T ss_pred HHHHHHHHHHH
Confidence 99999988765
No 56
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.97 E-value=8.1e-30 Score=195.57 Aligned_cols=160 Identities=24% Similarity=0.387 Sum_probs=136.4
Q ss_pred eEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEEE
Q psy549 51 RVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLVY 129 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 129 (253)
||+++|++|||||||+++|.++.+...+.+|.. ++....+.+ ++..+.+++||++|+++|..++..+++++|++++||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 80 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEI-LGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVF 80 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEE-CCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEE
Confidence 799999999999999999999999888877776 545566777 778899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEecCCCCCc-c--ccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHHH
Q psy549 130 AVDDASTWDVVKDLREQIVNKR-GLMVPIVVVGNKCELEFK-D--VRREIAETIALYDWQCGFVECSAKENYNIVQVFKE 205 (253)
Q Consensus 130 d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~-~--~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 205 (253)
|++++.+|..+..|+..+.... ....|+++|+||+|+... . ...+.+..++. ..+.+++++||++|.|++++|+.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~e~Sa~~g~~v~~lf~~ 159 (170)
T cd04108 81 DLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAA-EMQAEYWSVSALSGENVREFFFR 159 (170)
T ss_pred ECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHH-HcCCeEEEEECCCCCCHHHHHHH
Confidence 9999999999999999886643 335789999999998654 2 23455566665 45678999999999999999999
Q ss_pred HHHHHHH
Q psy549 206 LLAQAKV 212 (253)
Q Consensus 206 l~~~~~~ 212 (253)
|++.+.+
T Consensus 160 l~~~~~~ 166 (170)
T cd04108 160 VAALTFE 166 (170)
T ss_pred HHHHHHH
Confidence 9988743
No 57
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=7.6e-30 Score=194.79 Aligned_cols=161 Identities=25% Similarity=0.415 Sum_probs=137.5
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEE
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFV 126 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 126 (253)
..+||+|+|++|+|||||++++.++.+...+..+.. +.....+.+ ++..+.+.+||+||++++...+..+++.+|+++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~l 80 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEI-EGKRVKLQIWDTAGQERFRTITQSYYRSANGAI 80 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEE-CCEEEEEEEEECCChHHHHHHHHHHhccCCEEE
Confidence 358999999999999999999999888766655554 445566666 677789999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHHH
Q psy549 127 LVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFKE 205 (253)
Q Consensus 127 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 205 (253)
+|||++++.+|..+..|+..+......++|+++|+||+|+... ....+.+..++.......++++|+++|.|++++|.+
T Consensus 81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~ 160 (165)
T cd01864 81 IAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLL 160 (165)
T ss_pred EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHH
Confidence 9999999999999999999988766678999999999998765 555666777777445567899999999999999999
Q ss_pred HHHH
Q psy549 206 LLAQ 209 (253)
Q Consensus 206 l~~~ 209 (253)
|++.
T Consensus 161 l~~~ 164 (165)
T cd01864 161 MATE 164 (165)
T ss_pred HHHh
Confidence 9865
No 58
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.97 E-value=7.6e-30 Score=206.08 Aligned_cols=163 Identities=42% Similarity=0.748 Sum_probs=139.8
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEEE
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLVY 129 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 129 (253)
+||+++|++|||||||+++|+++.+...+.+|+.+.+...+.+ ++..+.++||||+|++.|..++..++..+|++|+||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i-~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSI-RGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEE-CCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 5899999999999999999999999888888888777788888 788899999999999999998888899999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHh---------cCCCCCEEEEEecCCCCC-ccccHHHHHHHHHhcCCCcEEEeccCCCCCH
Q psy549 130 AVDDASTWDVVKDLREQIVNK---------RGLMVPIVVVGNKCELEF-KDVRREIAETIALYDWQCGFVECSAKENYNI 199 (253)
Q Consensus 130 d~~~~~s~~~~~~~~~~~~~~---------~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 199 (253)
|+++.++|+.+..|+..+... ...++|+++|+||+|+.. ..+..+.+..+......+.++++||+++.|+
T Consensus 80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI 159 (247)
T cd04143 80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNL 159 (247)
T ss_pred eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCH
Confidence 999999999999998888753 234689999999999975 3455555555544345678999999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy549 200 VQVFKELLAQAKVQ 213 (253)
Q Consensus 200 ~~l~~~l~~~~~~~ 213 (253)
+++|++|+..+...
T Consensus 160 ~elf~~L~~~~~~p 173 (247)
T cd04143 160 DEMFRALFSLAKLP 173 (247)
T ss_pred HHHHHHHHHHhccc
Confidence 99999999876433
No 59
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.97 E-value=9.1e-30 Score=195.27 Aligned_cols=161 Identities=27% Similarity=0.460 Sum_probs=137.9
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEE
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFV 126 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 126 (253)
..+||+++|++|||||||+++|.++.+...+.++.. +.....+.+ ++..+.+++||+||++++..++..+++.+|+++
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 82 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEV-DGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL 82 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEE-CCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence 458999999999999999999999988766655554 444566667 788899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhc----CCCCCEEEEEecCCCCCccccHHHHHHHHHhcCCCcEEEeccCCCCCHHHH
Q psy549 127 LVYAVDDASTWDVVKDLREQIVNKR----GLMVPIVVVGNKCELEFKDVRREIAETIALYDWQCGFVECSAKENYNIVQV 202 (253)
Q Consensus 127 ~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 202 (253)
+|||++++.+|+.+..|+..+.... ..++|+++|+||+|+....+..+.++.++......+++++||++|.|+.++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~ 162 (170)
T cd04116 83 LTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRENGDYPYFETSAKDATNVAAA 162 (170)
T ss_pred EEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHHH
Confidence 9999999999999999998777643 246899999999999866677777777877444568999999999999999
Q ss_pred HHHHHHH
Q psy549 203 FKELLAQ 209 (253)
Q Consensus 203 ~~~l~~~ 209 (253)
|+++++.
T Consensus 163 ~~~~~~~ 169 (170)
T cd04116 163 FEEAVRR 169 (170)
T ss_pred HHHHHhh
Confidence 9999865
No 60
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.97 E-value=1.6e-29 Score=193.63 Aligned_cols=163 Identities=27% Similarity=0.383 Sum_probs=139.8
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEE
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFV 126 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 126 (253)
..+||+|+|++|||||||++++.+..+...+..+.. +.....+.+ ++..+.+.+||++|++++..+...+++.+|+++
T Consensus 3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il 81 (168)
T cd01866 3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI-DGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 81 (168)
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 458999999999999999999999887665555544 555566666 677789999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHHH
Q psy549 127 LVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFKE 205 (253)
Q Consensus 127 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 205 (253)
+|||++++.+|..+..|+..+.....+++|+++|+||.|+... .+..+..+.++. ..+++++++|++++.|++++|.+
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~e~Sa~~~~~i~~~~~~ 160 (168)
T cd01866 82 LVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAK-EHGLIFMETSAKTASNVEEAFIN 160 (168)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHH-HcCCEEEEEeCCCCCCHHHHHHH
Confidence 9999999999999999999888766678999999999998744 556666777766 46789999999999999999999
Q ss_pred HHHHHHH
Q psy549 206 LLAQAKV 212 (253)
Q Consensus 206 l~~~~~~ 212 (253)
+++.+.+
T Consensus 161 ~~~~~~~ 167 (168)
T cd01866 161 TAKEIYE 167 (168)
T ss_pred HHHHHHh
Confidence 9988743
No 61
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.97 E-value=1.4e-29 Score=193.58 Aligned_cols=159 Identities=23% Similarity=0.405 Sum_probs=135.0
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEE
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLV 128 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 128 (253)
+||+++|++|||||||+++++.+.+...+.+|.. +.....+.. ++..+.+.+|||+|++++..++..++..+|++|+|
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 79 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHT-NRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIM 79 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEE-CCEEEEEEEEECCCChhhccccHHHhcCCCEEEEE
Confidence 5899999999999999999998888766666665 444445555 67789999999999999999989999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHHHHHH
Q psy549 129 YAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLA 208 (253)
Q Consensus 129 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 208 (253)
||++++.+|..+..|+..+..... ++|+++|+||+|+.......+. ..+.. ....+++++||++|.|++++|++|++
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~~~~~~~~-~~~~~-~~~~~~~e~Sa~~~~~v~~~f~~l~~ 156 (166)
T cd00877 80 FDVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIKDRKVKAKQ-ITFHR-KKNLQYYEISAKSNYNFEKPFLWLAR 156 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhcccccCCHHH-HHHHH-HcCCEEEEEeCCCCCChHHHHHHHHH
Confidence 999999999999999998887653 7999999999999865554433 34554 46788999999999999999999999
Q ss_pred HHHH
Q psy549 209 QAKV 212 (253)
Q Consensus 209 ~~~~ 212 (253)
.+..
T Consensus 157 ~~~~ 160 (166)
T cd00877 157 KLLG 160 (166)
T ss_pred HHHh
Confidence 8864
No 62
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.97 E-value=8.9e-30 Score=199.66 Aligned_cols=163 Identities=37% Similarity=0.609 Sum_probs=133.1
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChh--------hHHHhcc
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPA--------MRELSIS 120 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------~~~~~~~ 120 (253)
+||+|+|++|||||||+++|.++.+...+.+++. +.+...+.+ ++..+.+++|||||...+.. .....++
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~-~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~ 79 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVL-SGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLR 79 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEE-CCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhc
Confidence 5899999999999999999999998777777765 445556666 77888999999999765421 1233578
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHHHhc---CCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCC
Q psy549 121 TADAFVLVYAVDDASTWDVVKDLREQIVNKR---GLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKEN 196 (253)
Q Consensus 121 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 196 (253)
.+|++|+|||++++.+|+.+..|+..+.... ..++|+++|+||+|+... .+..+..+.++...+++++++|||++|
T Consensus 80 ~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g 159 (198)
T cd04142 80 NSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYN 159 (198)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCC
Confidence 9999999999999999999999998887754 467999999999999664 445555666655467889999999999
Q ss_pred CCHHHHHHHHHHHHHHh
Q psy549 197 YNIVQVFKELLAQAKVQ 213 (253)
Q Consensus 197 ~~i~~l~~~l~~~~~~~ 213 (253)
.|++++|+.+++.+..+
T Consensus 160 ~~v~~lf~~i~~~~~~~ 176 (198)
T cd04142 160 WHILLLFKELLISATTR 176 (198)
T ss_pred CCHHHHHHHHHHHhhcc
Confidence 99999999999887644
No 63
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.97 E-value=1.3e-29 Score=193.44 Aligned_cols=160 Identities=28% Similarity=0.424 Sum_probs=138.0
Q ss_pred cceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEE
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVL 127 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 127 (253)
.+||+++|++|||||||++++.++.+...+.++.. +.....+.+ ++..+.+.+||+||++++..++..+++.++++|+
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 81 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQI-DGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEE-CCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence 47999999999999999999999887655555554 556667777 7777899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHHHH
Q psy549 128 VYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFKEL 206 (253)
Q Consensus 128 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 206 (253)
|||++++.+|..+..|+..+......++|+++|+||+|+... ....+....++. ..+++++++||++|.|++++|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~~l~~~l 160 (165)
T cd01868 82 VYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAE-KNGLSFIETSALDGTNVEEAFKQL 160 (165)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHH-HcCCEEEEEECCCCCCHHHHHHHH
Confidence 999999999999999999888776556999999999998764 556666777776 467899999999999999999999
Q ss_pred HHHH
Q psy549 207 LAQA 210 (253)
Q Consensus 207 ~~~~ 210 (253)
+..+
T Consensus 161 ~~~i 164 (165)
T cd01868 161 LTEI 164 (165)
T ss_pred HHHh
Confidence 8765
No 64
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.97 E-value=1.2e-29 Score=192.77 Aligned_cols=158 Identities=21% Similarity=0.333 Sum_probs=136.4
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEE
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLV 128 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 128 (253)
+||+|+|++|||||||++++.++.+...+..+.. +.....+.+ ++..+.+++||+||++++...+..+++++|++++|
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v 79 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRV-GGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLV 79 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEE-CCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEE
Confidence 5899999999999999999999988666655554 445556666 67778999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHHHHH
Q psy549 129 YAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELL 207 (253)
Q Consensus 129 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 207 (253)
||++++.+|..+..|+..+.....+++|+++|+||+|+... .+..+.+..++. ..+++++++|++++.|+.++|++++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~~~~~~~ 158 (161)
T cd04113 80 YDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQ-ENGLLFLETSALTGENVEEAFLKCA 158 (161)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHH-HcCCEEEEEECCCCCCHHHHHHHHH
Confidence 99999999999999999887766678999999999998754 555666777777 4558999999999999999999998
Q ss_pred HH
Q psy549 208 AQ 209 (253)
Q Consensus 208 ~~ 209 (253)
+.
T Consensus 159 ~~ 160 (161)
T cd04113 159 RS 160 (161)
T ss_pred Hh
Confidence 75
No 65
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.97 E-value=1.7e-29 Score=191.30 Aligned_cols=153 Identities=21% Similarity=0.360 Sum_probs=128.1
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEEE
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLVY 129 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 129 (253)
+||+++|++|||||||+.+++.+.+...+.++ ...+...+.+ ++..+.+.+||++|++. ..+++++|++++||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~~~~i~~-~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~ 73 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRFKKEVLV-DGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF 73 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccceEEEEEE-CCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence 58999999999999999999998887665544 3334567777 77888999999999975 24567899999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEecCCCCC---ccccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHHH
Q psy549 130 AVDDASTWDVVKDLREQIVNKRG-LMVPIVVVGNKCELEF---KDVRREIAETIALYDWQCGFVECSAKENYNIVQVFKE 205 (253)
Q Consensus 130 d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 205 (253)
|++++.+|+.+..|+..+..... .++|+++|+||.|+.. ..+..+.++.+++....+++++|||++|.||+++|..
T Consensus 74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~ 153 (158)
T cd04103 74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE 153 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence 99999999999999998877643 5689999999999853 3677777788887455689999999999999999999
Q ss_pred HHHH
Q psy549 206 LLAQ 209 (253)
Q Consensus 206 l~~~ 209 (253)
+++.
T Consensus 154 ~~~~ 157 (158)
T cd04103 154 AAQK 157 (158)
T ss_pred HHhh
Confidence 8864
No 66
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.97 E-value=8.2e-29 Score=193.89 Aligned_cols=161 Identities=23% Similarity=0.366 Sum_probs=135.2
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCCCCC-Ccccccee-eeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEE
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDRFIS-RYKETVEE-LHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVL 127 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~~~~-~~~~t~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 127 (253)
+||+|+|++|||||||+++|+++.+.. .+.+|... +....+.+ ++..+.+.+||++|++++..++..+++++|++++
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iil 79 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVV-GERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIV 79 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEE-CCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEE
Confidence 589999999999999999999998853 56666654 44556777 7788999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc-----cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHH
Q psy549 128 VYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-----DVRREIAETIALYDWQCGFVECSAKENYNIVQV 202 (253)
Q Consensus 128 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 202 (253)
|||+++..+|+.+..|+..+.... .++|+++|+||+|+... .+..+.+..++. ..+.+++++||+++.|++++
T Consensus 80 v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~Sa~~~~gv~~l 157 (193)
T cd04118 80 CYDLTDSSSFERAKFWVKELQNLE-EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFAD-EIKAQHFETSSKTGQNVDEL 157 (193)
T ss_pred EEECCCHHHHHHHHHHHHHHHhcC-CCCCEEEEEEcccccccccccCccCHHHHHHHHH-HcCCeEEEEeCCCCCCHHHH
Confidence 999999999999988998876643 57899999999998643 334455666665 45678999999999999999
Q ss_pred HHHHHHHHHHh
Q psy549 203 FKELLAQAKVQ 213 (253)
Q Consensus 203 ~~~l~~~~~~~ 213 (253)
|+++++.+...
T Consensus 158 ~~~i~~~~~~~ 168 (193)
T cd04118 158 FQKVAEDFVSR 168 (193)
T ss_pred HHHHHHHHHHh
Confidence 99999988654
No 67
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.97 E-value=2.6e-29 Score=191.05 Aligned_cols=157 Identities=27% Similarity=0.451 Sum_probs=133.8
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCC--CcEEEEEEEeCCCCCCChhhHHHhcccCCEEE
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPD--GAQLTLDILDTSGAYQFPAMRELSISTADAFV 126 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~--~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 126 (253)
+||+++|++|+|||||+++|.++.+...+.+|.. +.....+.+ + +..+.+++||+||++++..++..+++++|+++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v 79 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFL-RQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACI 79 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEE-cCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEE
Confidence 5899999999999999999999988776666665 444455555 4 66789999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHHH
Q psy549 127 LVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFKE 205 (253)
Q Consensus 127 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 205 (253)
+|||++++++|..+..|+..+.... .++|+++|+||+|+... .+..+.+..++. ..+++++++|++++.|++++|++
T Consensus 80 ~v~d~~~~~s~~~l~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~~l~~~ 157 (162)
T cd04106 80 LVFSTTDRESFEAIESWKEKVEAEC-GDIPMVLVQTKIDLLDQAVITNEEAEALAK-RLQLPLFRTSVKDDFNVTELFEY 157 (162)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhcccccCCCHHHHHHHHH-HcCCeEEEEECCCCCCHHHHHHH
Confidence 9999999999999999998876543 57999999999998654 555666777777 56789999999999999999999
Q ss_pred HHHH
Q psy549 206 LLAQ 209 (253)
Q Consensus 206 l~~~ 209 (253)
|...
T Consensus 158 l~~~ 161 (162)
T cd04106 158 LAEK 161 (162)
T ss_pred HHHh
Confidence 8764
No 68
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.97 E-value=2.2e-29 Score=193.79 Aligned_cols=158 Identities=28% Similarity=0.456 Sum_probs=135.9
Q ss_pred EEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEEEEC
Q psy549 52 VVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLVYAV 131 (253)
Q Consensus 52 I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 131 (253)
|+|+|++|||||||+++|.++.+...+.++....+...+.+ ++..+.+.+|||+|+++|..++..+++.+|++|+|||+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEV-DGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEE-CCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 68999999999999999999999877777777777677777 77888999999999999999999999999999999999
Q ss_pred CChhhHHHHH-HHHHHHHHhcCCCCCEEEEEecCCCCCc-------------cccHHHHHHHHHhcCCCcEEEeccCCCC
Q psy549 132 DDASTWDVVK-DLREQIVNKRGLMVPIVVVGNKCELEFK-------------DVRREIAETIALYDWQCGFVECSAKENY 197 (253)
Q Consensus 132 ~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~-------------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 197 (253)
+++.+|+.+. .|+..+.... +++|+++|+||+|+... .+..+.+..++......++++|||++|.
T Consensus 80 ~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 158 (174)
T smart00174 80 DSPASFENVKEKWYPEVKHFC-PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE 158 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhhC-CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 9999999985 5887776643 67999999999998653 2556667778874444589999999999
Q ss_pred CHHHHHHHHHHHHH
Q psy549 198 NIVQVFKELLAQAK 211 (253)
Q Consensus 198 ~i~~l~~~l~~~~~ 211 (253)
|++++|+.+++.+.
T Consensus 159 ~v~~lf~~l~~~~~ 172 (174)
T smart00174 159 GVREVFEEAIRAAL 172 (174)
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999998763
No 69
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.97 E-value=3.8e-29 Score=196.52 Aligned_cols=195 Identities=56% Similarity=0.904 Sum_probs=154.2
Q ss_pred eEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEEEE
Q psy549 51 RVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLVYA 130 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 130 (253)
||+++|++|||||||+++|+++.+...+..+........+.+ ++..+.+++||++|+..|..++..++..+|++|+|||
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEV-GGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEE-CCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence 689999999999999999999998777777776666667777 6777899999999999999998899999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEecCCCCCc--cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHHHHH
Q psy549 131 VDDASTWDVVKDLREQIVNKRG-LMVPIVVVGNKCELEFK--DVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELL 207 (253)
Q Consensus 131 ~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 207 (253)
++++.+|+.+..|+..+..... .++|+++|+||+|+... .+..+.........++.+++++||++|.|++++|++|+
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 159 (198)
T cd04147 80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL 159 (198)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence 9999999999999888777543 56999999999998653 33333333333334567899999999999999999999
Q ss_pred HHHHHhcccChhhccccccCCCCcCCCCCCCCCCcccccCCCcccC
Q psy549 208 AQAKVQYNLSPAVRRRRQSLPNYIGTTGSASSKGRYMLKRNSCTVA 253 (253)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~ 253 (253)
+.+.......+...++..+.+ ..+.++..+-+...|.++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~ 198 (198)
T cd04147 160 RQANLPYNLSPALRRRRESLP-------SEIQRRPPMNKTNSCSVS 198 (198)
T ss_pred HHhhcccccchhhHHHHhhcc-------HhhhcCCCCCCCCccccC
Confidence 988765555554444433332 224556666777778764
No 70
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.97 E-value=4.8e-29 Score=189.68 Aligned_cols=158 Identities=25% Similarity=0.399 Sum_probs=131.7
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEE
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLV 128 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 128 (253)
+||+++|++|||||||++++.++.+...+.++.. ..+...+.+ ++..+.+.+|||+|+++|..++..+++++|++|+|
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 79 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKF-EGKTILVDFWDTAGQERFQTMHASYYHKAHACILV 79 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEE-CCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEE
Confidence 5899999999999999999999988766655544 444455566 77889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHHHHHH
Q psy549 129 YAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLA 208 (253)
Q Consensus 129 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 208 (253)
||++++.++..+..|+..+.... +++|+++|+||+|+... . .+....++. ..+++++++||++|.|++++|+.+++
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~-~~~p~ivv~nK~Dl~~~-~-~~~~~~~~~-~~~~~~~~~Sa~~~~gv~~l~~~l~~ 155 (161)
T cd04124 80 FDVTRKITYKNLSKWYEELREYR-PEIPCIVVANKIDLDPS-V-TQKKFNFAE-KHNLPLYYVSAADGTNVVKLFQDAIK 155 (161)
T ss_pred EECCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEECccCchh-H-HHHHHHHHH-HcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999998886643 56899999999998542 2 223344554 45688999999999999999999998
Q ss_pred HHHH
Q psy549 209 QAKV 212 (253)
Q Consensus 209 ~~~~ 212 (253)
.+..
T Consensus 156 ~~~~ 159 (161)
T cd04124 156 LAVS 159 (161)
T ss_pred HHHh
Confidence 8754
No 71
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.97 E-value=6.1e-29 Score=190.40 Aligned_cols=161 Identities=40% Similarity=0.641 Sum_probs=138.8
Q ss_pred cceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEE
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLV 128 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 128 (253)
++||+++|++|||||||+++|.++.+...+.++....+...+.+ ++..+.+++||+||+++|..++..+++.++++++|
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv 79 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEI-DGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLV 79 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEE-CCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEE
Confidence 47999999999999999999999998777777877666677777 77778999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHh-cCCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCC-CcEEEeccCCCCCHHHHHHH
Q psy549 129 YAVDDASTWDVVKDLREQIVNK-RGLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQ-CGFVECSAKENYNIVQVFKE 205 (253)
Q Consensus 129 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~ 205 (253)
||++++++++.+..|...+... ...++|+++|+||.|+... ....+....++. .++ ++++++||+++.|++++|++
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~~SA~~~~~i~~~f~~ 158 (168)
T cd04177 80 YSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQ-QWGNVPFYETSARKRTNVDEVFID 158 (168)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHH-HcCCceEEEeeCCCCCCHHHHHHH
Confidence 9999999999999998888763 3357999999999998654 445555666666 444 88999999999999999999
Q ss_pred HHHHHH
Q psy549 206 LLAQAK 211 (253)
Q Consensus 206 l~~~~~ 211 (253)
+++.+.
T Consensus 159 i~~~~~ 164 (168)
T cd04177 159 LVRQII 164 (168)
T ss_pred HHHHHh
Confidence 998663
No 72
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.97 E-value=3.4e-29 Score=196.16 Aligned_cols=155 Identities=22% Similarity=0.370 Sum_probs=134.4
Q ss_pred ECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEEEECCC
Q psy549 55 MGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLVYAVDD 133 (253)
Q Consensus 55 iG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~ 133 (253)
+|++|||||||+++|+.+.+...+.+|.+ +.....+.+ ++..+.+.|||++|+++|..++..+++++|++|+|||+++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~-~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~ 79 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT-NRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTA 79 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEE-CCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCC
Confidence 69999999999999999888777777775 566666777 7788999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHHHHHHHHHHh
Q psy549 134 ASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQAKVQ 213 (253)
Q Consensus 134 ~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 213 (253)
+.+|..+..|+..+.... .++|+++|+||+|+....+..+.. .++. ..++++++|||++|.||.++|.+|++.+...
T Consensus 80 ~~S~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~~~v~~~~~-~~~~-~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~ 156 (200)
T smart00176 80 RVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDVKDRKVKAKSI-TFHR-KKNLQYYDISAKSNYNFEKPFLWLARKLIGD 156 (200)
T ss_pred hHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccCCHHHH-HHHH-HcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 999999999999888754 579999999999987655544443 4555 5678999999999999999999999988664
No 73
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.97 E-value=3.8e-29 Score=190.94 Aligned_cols=159 Identities=38% Similarity=0.632 Sum_probs=134.0
Q ss_pred eEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCC-ChhhHHHhcccCCEEEEEE
Q psy549 51 RVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQ-FPAMRELSISTADAFVLVY 129 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-~~~~~~~~~~~~d~~i~v~ 129 (253)
||+++|++|||||||+++++++.+...+.++....+...+.+ ++..+.+++||+||+++ +......+++.+|++|+||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTI-DGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEE-CCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 689999999999999999999888777777776666666667 78888999999999985 3455667889999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhc--CCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCC-CHHHHHHH
Q psy549 130 AVDDASTWDVVKDLREQIVNKR--GLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENY-NIVQVFKE 205 (253)
Q Consensus 130 d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~l~~~ 205 (253)
|++++.+|+.+..|+..+.... ..++|+++|+||+|+... .+..+.+..++. ..+.+++++|++++. |++++|..
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-~~~~~~~e~Sa~~~~~~v~~~f~~ 158 (165)
T cd04146 80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLAS-ELGCLFFEVSAAEDYDGVHSVFHE 158 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHH-HcCCEEEEeCCCCCchhHHHHHHH
Confidence 9999999999999988877754 357999999999998654 556667777776 456899999999995 99999999
Q ss_pred HHHHHH
Q psy549 206 LLAQAK 211 (253)
Q Consensus 206 l~~~~~ 211 (253)
+++.+.
T Consensus 159 l~~~~~ 164 (165)
T cd04146 159 LCREVR 164 (165)
T ss_pred HHHHHh
Confidence 998764
No 74
>KOG0081|consensus
Probab=99.97 E-value=1e-30 Score=188.13 Aligned_cols=171 Identities=22% Similarity=0.321 Sum_probs=150.4
Q ss_pred CCCCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcC--------CCcEEEEEEEeCCCCCCChhh
Q psy549 44 GLQKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELP--------DGAQLTLDILDTSGAYQFPAM 114 (253)
Q Consensus 44 ~~~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~--------~~~~~~~~l~D~~g~~~~~~~ 114 (253)
+....-++.+.+|++|+||||++.++..++|....+.|.+ ++..+.+.+. .+..+.+++|||+|+++|+++
T Consensus 4 GdydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSL 83 (219)
T KOG0081|consen 4 GDYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSL 83 (219)
T ss_pred ccHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHH
Confidence 3455668899999999999999999999999888887776 6666666552 134688999999999999999
Q ss_pred HHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHh-cCCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEec
Q psy549 115 RELSISTADAFVLVYAVDDASTWDVVKDLREQIVNK-RGLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECS 192 (253)
Q Consensus 115 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~S 192 (253)
+..++++|-+++++||+++..||-++..|+..+..+ ...++-|++++||+|+.+. ++.+..+..++. ..++|||++|
T Consensus 84 TTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~-kyglPYfETS 162 (219)
T KOG0081|consen 84 TTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALAD-KYGLPYFETS 162 (219)
T ss_pred HHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHH-HhCCCeeeec
Confidence 999999999999999999999999999999988773 4567889999999999887 788888999999 7899999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHhcc
Q psy549 193 AKENYNIVQVFKELLAQAKVQYN 215 (253)
Q Consensus 193 a~~~~~i~~l~~~l~~~~~~~~~ 215 (253)
|-+|.||++..+.+..++.++..
T Consensus 163 A~tg~Nv~kave~LldlvM~Rie 185 (219)
T KOG0081|consen 163 ACTGTNVEKAVELLLDLVMKRIE 185 (219)
T ss_pred cccCcCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888754
No 75
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.97 E-value=7.6e-29 Score=190.22 Aligned_cols=160 Identities=26% Similarity=0.453 Sum_probs=136.7
Q ss_pred cceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCCh-hhHHHhcccCCEEE
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFP-AMRELSISTADAFV 126 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-~~~~~~~~~~d~~i 126 (253)
.++|+++|++|||||||+++|+++.+...+..+.. +.....+.+ ++..+.+.+||++|++++. .++..+++++|+++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i 80 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEI-DGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVV 80 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEE-CCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEE
Confidence 47999999999999999999999888766655554 555566777 7778899999999999886 56788899999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCC---CCCHHH
Q psy549 127 LVYAVDDASTWDVVKDLREQIVNKR-GLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKE---NYNIVQ 201 (253)
Q Consensus 127 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~i~~ 201 (253)
+|||++++.+|..+..|+..+.... ..++|+++|+||+|+... .+..+.++.++. ...+++++|||++ +.++++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~e~Sa~~~~~~~~i~~ 159 (170)
T cd04115 81 FVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFAD-AHSMPLFETSAKDPSENDHVEA 159 (170)
T ss_pred EEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHH-HcCCcEEEEeccCCcCCCCHHH
Confidence 9999999999999999998887743 356999999999998765 566777888887 5678999999999 889999
Q ss_pred HHHHHHHHH
Q psy549 202 VFKELLAQA 210 (253)
Q Consensus 202 l~~~l~~~~ 210 (253)
+|..+++.+
T Consensus 160 ~f~~l~~~~ 168 (170)
T cd04115 160 IFMTLAHKL 168 (170)
T ss_pred HHHHHHHHh
Confidence 999998876
No 76
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.97 E-value=9.3e-29 Score=188.27 Aligned_cols=161 Identities=31% Similarity=0.484 Sum_probs=138.0
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEE
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLV 128 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 128 (253)
+||+++|++|||||||+++|.+..+...+..+.. +.....+.+ ++..+.+.+||+||++++...+..+++.+|++++|
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv 79 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEV-DGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLV 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEE-CCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEE
Confidence 5899999999999999999999887655555544 444555666 77778999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHHHHH
Q psy549 129 YAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELL 207 (253)
Q Consensus 129 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 207 (253)
||++++.+++.+..|+..+.....+++|+++|+||+|+... ....+.++.+.. ..+++++++|++++.|++++|++|+
T Consensus 80 ~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~e~Sa~~~~~i~~l~~~i~ 158 (164)
T smart00175 80 YDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAE-EHGLPFFETSAKTNTNVEEAFEELA 158 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHH-HcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 99999999999999999888876678999999999998764 556667777776 5678899999999999999999999
Q ss_pred HHHHH
Q psy549 208 AQAKV 212 (253)
Q Consensus 208 ~~~~~ 212 (253)
+.+.+
T Consensus 159 ~~~~~ 163 (164)
T smart00175 159 REILK 163 (164)
T ss_pred HHHhh
Confidence 98754
No 77
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.97 E-value=7.5e-29 Score=188.36 Aligned_cols=158 Identities=30% Similarity=0.509 Sum_probs=135.0
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEE
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLV 128 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 128 (253)
+||+++|++|||||||+++|++..+...+.++.. +.....+.+ ++..+.+.+||+||++++..++..+++.+|++++|
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v 79 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYL-EDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 79 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEE-CCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence 4899999999999999999999887554444443 677777777 66778899999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHHHHH
Q psy549 129 YAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELL 207 (253)
Q Consensus 129 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 207 (253)
||++++.+|..+..|+..+......+.|+++|+||+|+... ....+....+.. ..+++++++|++++.|++++|++++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~~l~~~i~ 158 (161)
T cd01861 80 YDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAK-ELNAMFIETSAKAGHNVKELFRKIA 158 (161)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHH-HhCCEEEEEeCCCCCCHHHHHHHHH
Confidence 99999999999999999887765557999999999999544 556666677766 4568899999999999999999998
Q ss_pred HH
Q psy549 208 AQ 209 (253)
Q Consensus 208 ~~ 209 (253)
+.
T Consensus 159 ~~ 160 (161)
T cd01861 159 SA 160 (161)
T ss_pred Hh
Confidence 75
No 78
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.97 E-value=7.6e-29 Score=190.82 Aligned_cols=159 Identities=26% Similarity=0.398 Sum_probs=135.4
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEEE
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLVY 129 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 129 (253)
+||+++|++|+|||||+++|.++.+...+.++..+.+...+.+ ++..+.+.+||++|++.|...+..+++.+|++++||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTV-GGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEE-CCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 5899999999999999999999998877777777666667777 777888999999999999999999999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHHhcCCCCCEEEEEecCCCCCc-------------cccHHHHHHHHHhcCCCcEEEeccCC
Q psy549 130 AVDDASTWDVVK-DLREQIVNKRGLMVPIVVVGNKCELEFK-------------DVRREIAETIALYDWQCGFVECSAKE 195 (253)
Q Consensus 130 d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~-------------~~~~~~~~~~~~~~~~~~~~~~Sa~~ 195 (253)
|++++.+|+.+. .|...+... .+++|+++|+||+|+.+. .+..+.++.+++.....++++|||++
T Consensus 80 ~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 158 (174)
T cd04135 80 SVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT 158 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence 999999999885 576666554 577999999999998653 34456677777744445799999999
Q ss_pred CCCHHHHHHHHHHHH
Q psy549 196 NYNIVQVFKELLAQA 210 (253)
Q Consensus 196 ~~~i~~l~~~l~~~~ 210 (253)
|.|++++|+.+++.+
T Consensus 159 ~~gi~~~f~~~~~~~ 173 (174)
T cd04135 159 QKGLKTVFDEAILAI 173 (174)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998875
No 79
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.97 E-value=1.1e-28 Score=188.09 Aligned_cols=159 Identities=24% Similarity=0.332 Sum_probs=134.6
Q ss_pred ceEEEECCCCCCHHHHHHHHHhC--CCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEE
Q psy549 50 RRVVVMGGARVGKSSIISQFLYD--RFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFV 126 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~--~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 126 (253)
+||+++|++|||||||+++|..+ .+...+..+.. +.....+.+.++..+.+.+||++|++.+..++..+++.+|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999864 57777777765 5555666664567899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHHH
Q psy549 127 LVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFKE 205 (253)
Q Consensus 127 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 205 (253)
+|||++++.+|..+..|+..+.... .++|+++|+||+|+.+. .+....++.+.. ..+.+++++|++++.|++++|+.
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~l~~~ 158 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLADKAEVTDAQAQAFAQ-ANQLKFFKTSALRGVGYEEPFES 158 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccCCCHHHHHHHHH-HcCCeEEEEeCCCCCChHHHHHH
Confidence 9999999999999999998877654 56899999999998655 455555566665 55688999999999999999999
Q ss_pred HHHHH
Q psy549 206 LLAQA 210 (253)
Q Consensus 206 l~~~~ 210 (253)
|++.+
T Consensus 159 l~~~~ 163 (164)
T cd04101 159 LARAF 163 (164)
T ss_pred HHHHh
Confidence 98865
No 80
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.97 E-value=9.1e-29 Score=190.34 Aligned_cols=157 Identities=25% Similarity=0.448 Sum_probs=135.3
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEEE
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLVY 129 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 129 (253)
+||+++|++|+|||||++++.++.+...+.+|..+.+...+.+ ++..+.+++||++|++++..++..+++++|++|+||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLV-DGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEE-CCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 5899999999999999999999999888888887777777777 777889999999999999999999999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHHhcCCCCCEEEEEecCCCCCc-------------cccHHHHHHHHHhcCCCcEEEeccCC
Q psy549 130 AVDDASTWDVVK-DLREQIVNKRGLMVPIVVVGNKCELEFK-------------DVRREIAETIALYDWQCGFVECSAKE 195 (253)
Q Consensus 130 d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~-------------~~~~~~~~~~~~~~~~~~~~~~Sa~~ 195 (253)
|++++.+|+.+. .|+..+... ..++|+++|+||+|+... .+..+.+..++...+..+++++||++
T Consensus 80 d~~~~~sf~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~ 158 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEIRKH-NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT 158 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence 999999999875 587776653 356899999999998642 45667788888744445899999999
Q ss_pred CCCHHHHHHHHHH
Q psy549 196 NYNIVQVFKELLA 208 (253)
Q Consensus 196 ~~~i~~l~~~l~~ 208 (253)
|.|++++|+.++-
T Consensus 159 ~~~v~~lf~~~~~ 171 (173)
T cd04130 159 QKNLKEVFDTAIL 171 (173)
T ss_pred CCCHHHHHHHHHh
Confidence 9999999998764
No 81
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.97 E-value=1.8e-28 Score=186.59 Aligned_cols=160 Identities=26% Similarity=0.412 Sum_probs=137.5
Q ss_pred cceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEE
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVL 127 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 127 (253)
.+||+++|++|||||||+++++++.+...+..+.. .+....+.+ ++..+.+.+||+||++++...+..+++++|++++
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 79 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNL-DDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEE
Confidence 47999999999999999999999998765555555 455667777 7778899999999999999999889999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHHHH
Q psy549 128 VYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFKEL 206 (253)
Q Consensus 128 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 206 (253)
|||++++.+|.....|+..+.....+.+|+++|+||+|+... ....+....+.. ..+++++++|+++|.|+.++|+++
T Consensus 80 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~~l~~~l 158 (163)
T cd01860 80 VYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYAD-ENGLLFFETSAKTGENVNELFTEI 158 (163)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHH-HcCCEEEEEECCCCCCHHHHHHHH
Confidence 999999999999999999888876677999999999998743 455556666666 455889999999999999999999
Q ss_pred HHHH
Q psy549 207 LAQA 210 (253)
Q Consensus 207 ~~~~ 210 (253)
++.+
T Consensus 159 ~~~l 162 (163)
T cd01860 159 AKKL 162 (163)
T ss_pred HHHh
Confidence 9875
No 82
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=9.3e-29 Score=193.27 Aligned_cols=156 Identities=22% Similarity=0.324 Sum_probs=125.3
Q ss_pred cceEEEECCCCCCHHHHHH-HHHhCC-----CCCCccccce--eeeeee--------EEcCCCcEEEEEEEeCCCCCCCh
Q psy549 49 KRRVVVMGGARVGKSSIIS-QFLYDR-----FISRYKETVE--ELHRGE--------YELPDGAQLTLDILDTSGAYQFP 112 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~-~l~~~~-----~~~~~~~t~~--~~~~~~--------~~~~~~~~~~~~l~D~~g~~~~~ 112 (253)
.+||+++|++|||||||+. ++.++. +...+.+|.. +.+... +.+ ++..+.+++|||+|++++
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~-~~~~v~l~iwDTaG~~~~- 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVV-DGVSVSLRLWDTFGDHDK- 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceee-CCEEEEEEEEeCCCChhh-
Confidence 4799999999999999995 665543 3455666653 222222 134 788999999999999763
Q ss_pred hhHHHhcccCCEEEEEEECCChhhHHHHH-HHHHHHHHhcCCCCCEEEEEecCCCCC--------------------ccc
Q psy549 113 AMRELSISTADAFVLVYAVDDASTWDVVK-DLREQIVNKRGLMVPIVVVGNKCELEF--------------------KDV 171 (253)
Q Consensus 113 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~--------------------~~~ 171 (253)
+...+++++|++|+|||++++.||+.+. .|+..+.... +++|+++|+||+|+.. ..+
T Consensus 80 -~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V 157 (195)
T cd01873 80 -DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADIL 157 (195)
T ss_pred -hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhccccccchhhhcccccccccccCCcc
Confidence 4556889999999999999999999986 5888776644 5789999999999863 366
Q ss_pred cHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHHHHHHH
Q psy549 172 RREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQ 209 (253)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 209 (253)
..+.++.+++ ..+++|++|||++|.||+++|+.+++.
T Consensus 158 ~~~e~~~~a~-~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 158 PPETGRAVAK-ELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred CHHHHHHHHH-HhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 7888999998 567899999999999999999998864
No 83
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.97 E-value=2.4e-28 Score=185.90 Aligned_cols=160 Identities=35% Similarity=0.648 Sum_probs=139.4
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEEE
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLVY 129 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 129 (253)
+||+++|++|||||||++++++..+...+.+++.+.+.....+ ++..+.+.+||+||++++...+..+++.+|++++||
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVL-DGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEE-CCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 5899999999999999999999998888887777777777777 778899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEecCCCCC-ccccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHHHHH
Q psy549 130 AVDDASTWDVVKDLREQIVNKR-GLMVPIVVVGNKCELEF-KDVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELL 207 (253)
Q Consensus 130 d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 207 (253)
|++++.+|..+..|+..+.... ..++|+++|+||+|+.. ..........+.. .++.+++++|++++.|++++|++++
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~l~~~l~ 158 (164)
T cd04139 80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLAR-QWGVPYVETSAKTRQNVEKAFYDLV 158 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHH-HhCCeEEEeeCCCCCCHHHHHHHHH
Confidence 9999999999999988888753 35799999999999976 3455555566666 5678999999999999999999999
Q ss_pred HHHH
Q psy549 208 AQAK 211 (253)
Q Consensus 208 ~~~~ 211 (253)
+.+.
T Consensus 159 ~~~~ 162 (164)
T cd04139 159 REIR 162 (164)
T ss_pred HHHH
Confidence 8774
No 84
>PLN03118 Rab family protein; Provisional
Probab=99.97 E-value=1.1e-27 Score=190.17 Aligned_cols=166 Identities=27% Similarity=0.401 Sum_probs=134.6
Q ss_pred CCCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCC
Q psy549 45 LQKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTAD 123 (253)
Q Consensus 45 ~~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 123 (253)
.....+||+|+|++|||||||+++|++..+.. +.++.. +.....+.+ ++..+.+.|||+||++++..++..+++.+|
T Consensus 10 ~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 87 (211)
T PLN03118 10 GYDLSFKILLIGDSGVGKSSLLVSFISSSVED-LAPTIGVDFKIKQLTV-GGKRLKLTIWDTAGQERFRTLTSSYYRNAQ 87 (211)
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHHhCCCCC-cCCCceeEEEEEEEEE-CCEEEEEEEEECCCchhhHHHHHHHHhcCC
Confidence 34567999999999999999999999987743 344443 455556666 677789999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHH-HHHHHHHhc-CCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHH
Q psy549 124 AFVLVYAVDDASTWDVVKD-LREQIVNKR-GLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIV 200 (253)
Q Consensus 124 ~~i~v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 200 (253)
++|+|||++++++|..+.. |...+.... ..+.|+++|+||+|+... .+..+....++. ..+++++++||+++.|++
T Consensus 88 ~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~-~~~~~~~e~SAk~~~~v~ 166 (211)
T PLN03118 88 GIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAK-EHGCLFLECSAKTRENVE 166 (211)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHH-HcCCEEEEEeCCCCCCHH
Confidence 9999999999999999876 544444332 245899999999998754 445566666666 456889999999999999
Q ss_pred HHHHHHHHHHHHh
Q psy549 201 QVFKELLAQAKVQ 213 (253)
Q Consensus 201 ~l~~~l~~~~~~~ 213 (253)
++|++|++.+...
T Consensus 167 ~l~~~l~~~~~~~ 179 (211)
T PLN03118 167 QCFEELALKIMEV 179 (211)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998664
No 85
>KOG0097|consensus
Probab=99.96 E-value=1.9e-28 Score=173.27 Aligned_cols=170 Identities=26% Similarity=0.335 Sum_probs=154.7
Q ss_pred CCCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCC
Q psy549 45 LQKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTAD 123 (253)
Q Consensus 45 ~~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 123 (253)
..+..+|.+|+|+-|+|||+|++.|...+|..+.+.|+. .+-...+.+ .|+.+++++|||+|+++|+..+..+|+++.
T Consensus 7 nysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriiev-sgqkiklqiwdtagqerfravtrsyyrgaa 85 (215)
T KOG0097|consen 7 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEV-SGQKIKLQIWDTAGQERFRAVTRSYYRGAA 85 (215)
T ss_pred chhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEe-cCcEEEEEEeecccHHHHHHHHHHHhcccc
Confidence 356778999999999999999999999999999999988 555566666 899999999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHH
Q psy549 124 AFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQV 202 (253)
Q Consensus 124 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 202 (253)
++++|||++.+..+..+..|+........++..+++++||.|+... ++..+.++.++. ..++-++++|+++|.++++.
T Consensus 86 galmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~fae-engl~fle~saktg~nveda 164 (215)
T KOG0097|consen 86 GALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAE-ENGLMFLEASAKTGQNVEDA 164 (215)
T ss_pred ceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHh-hcCeEEEEecccccCcHHHH
Confidence 9999999999999999999999988888899999999999999876 889999999999 78899999999999999999
Q ss_pred HHHHHHHHHHhccc
Q psy549 203 FKELLAQAKVQYNL 216 (253)
Q Consensus 203 ~~~l~~~~~~~~~~ 216 (253)
|-..++.+......
T Consensus 165 fle~akkiyqniqd 178 (215)
T KOG0097|consen 165 FLETAKKIYQNIQD 178 (215)
T ss_pred HHHHHHHHHHhhhc
Confidence 98888888766443
No 86
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.96 E-value=5.6e-28 Score=183.45 Aligned_cols=159 Identities=29% Similarity=0.467 Sum_probs=134.6
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEE
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLV 128 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 128 (253)
+||+|+|++|+|||||+++|+++.+...+..++. ......+.+ ++..+.+.+||++|++.+..++..+++.+|++++|
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNI-GGKRIDLAIWDTAGQERYHALGPIYYRDADGAILV 79 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEE-CCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEE
Confidence 5899999999999999999999888655555554 445556666 56778899999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHHHHH
Q psy549 129 YAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELL 207 (253)
Q Consensus 129 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 207 (253)
||++++.++..+..|+..+......++|+++|+||+|+... ....+..+.+.. ..+.+++++|++++.|++++|++|+
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~gi~~~~~~l~ 158 (162)
T cd04123 80 YDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAK-SVGAKHFETSAKTGKGIEELFLSLA 158 (162)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHH-HcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 99999999999999998888766567999999999998754 455555666665 5678899999999999999999998
Q ss_pred HHH
Q psy549 208 AQA 210 (253)
Q Consensus 208 ~~~ 210 (253)
+.+
T Consensus 159 ~~~ 161 (162)
T cd04123 159 KRM 161 (162)
T ss_pred HHh
Confidence 765
No 87
>KOG0395|consensus
Probab=99.96 E-value=2.3e-28 Score=190.07 Aligned_cols=167 Identities=44% Similarity=0.730 Sum_probs=154.1
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEE
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVL 127 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 127 (253)
..+||+++|.+|+|||+|+.+|+.+.|...|.+|+++.+.+.+.+ ++..+.+.|+||+|+++|..+...+++.+|++++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v-~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l 80 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTV-DGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL 80 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEE-CCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence 468999999999999999999999999999999999999999999 7899999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHH-hcCCCCCEEEEEecCCCCC-ccccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHHH
Q psy549 128 VYAVDDASTWDVVKDLREQIVN-KRGLMVPIVVVGNKCELEF-KDVRREIAETIALYDWQCGFVECSAKENYNIVQVFKE 205 (253)
Q Consensus 128 v~d~~~~~s~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 205 (253)
||++++..||+.+..++..+.+ .....+|+++||||+|+.. ..+..+.++.++. .|.++++|+||+...+++++|..
T Consensus 81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~-~~~~~f~E~Sak~~~~v~~~F~~ 159 (196)
T KOG0395|consen 81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALAR-SWGCAFIETSAKLNYNVDEVFYE 159 (196)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHH-hcCCcEEEeeccCCcCHHHHHHH
Confidence 9999999999999999999955 3335689999999999988 4899999999988 89999999999999999999999
Q ss_pred HHHHHHHhccc
Q psy549 206 LLAQAKVQYNL 216 (253)
Q Consensus 206 l~~~~~~~~~~ 216 (253)
|.+.+...+..
T Consensus 160 L~r~~~~~~~~ 170 (196)
T KOG0395|consen 160 LVREIRLPREG 170 (196)
T ss_pred HHHHHHhhhcc
Confidence 99998764343
No 88
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.96 E-value=9.2e-28 Score=184.25 Aligned_cols=163 Identities=29% Similarity=0.481 Sum_probs=134.9
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEE
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLV 128 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 128 (253)
+||+++|++|||||||++++.+..+...+..+.. +.....+.+ ++..+.+.+||+||++.+..++..+++++|++|+|
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 79 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTV-DDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLV 79 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEE-CCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEE
Confidence 5899999999999999999999887665555544 555566667 66778899999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcC----CCCCEEEEEecCCCCC-ccccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHH
Q psy549 129 YAVDDASTWDVVKDLREQIVNKRG----LMVPIVVVGNKCELEF-KDVRREIAETIALYDWQCGFVECSAKENYNIVQVF 203 (253)
Q Consensus 129 ~d~~~~~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 203 (253)
||++++.++..+..|...+..... .++|+++|+||+|+.. .....+..+.+.......+++++|+++|.|++++|
T Consensus 80 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 159 (172)
T cd01862 80 YDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAF 159 (172)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHH
Confidence 999999999988888877655432 3689999999999974 34445555666663445899999999999999999
Q ss_pred HHHHHHHHHh
Q psy549 204 KELLAQAKVQ 213 (253)
Q Consensus 204 ~~l~~~~~~~ 213 (253)
+++++.+.+.
T Consensus 160 ~~i~~~~~~~ 169 (172)
T cd01862 160 ETIARKALEQ 169 (172)
T ss_pred HHHHHHHHhc
Confidence 9999988665
No 89
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.96 E-value=6.4e-28 Score=185.82 Aligned_cols=159 Identities=28% Similarity=0.453 Sum_probs=132.3
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEEE
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLVY 129 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 129 (253)
.||+|+|++|||||||+++|.++.+...+.+|....+...+.+ ++..+.+.+|||+|+++|...+...+.++|++++||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEV-DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEE-CCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 6899999999999999999999998877777777666667777 777889999999999999888888899999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHHhcCCCCCEEEEEecCCCCCc-------------cccHHHHHHHHHhcCCCcEEEeccCC
Q psy549 130 AVDDASTWDVVK-DLREQIVNKRGLMVPIVVVGNKCELEFK-------------DVRREIAETIALYDWQCGFVECSAKE 195 (253)
Q Consensus 130 d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~-------------~~~~~~~~~~~~~~~~~~~~~~Sa~~ 195 (253)
|+++..+|+.+. .|...+... ..++|+++|+||+|+... .+.....+.++......++++|||++
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKT 159 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecccc
Confidence 999999998875 476666543 357899999999998643 12345566666644456899999999
Q ss_pred CCCHHHHHHHHHHHH
Q psy549 196 NYNIVQVFKELLAQA 210 (253)
Q Consensus 196 ~~~i~~l~~~l~~~~ 210 (253)
|.|++++|+++++.+
T Consensus 160 ~~~v~~lf~~l~~~~ 174 (175)
T cd01870 160 KEGVREVFEMATRAA 174 (175)
T ss_pred CcCHHHHHHHHHHHh
Confidence 999999999998764
No 90
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.96 E-value=1e-27 Score=182.20 Aligned_cols=158 Identities=27% Similarity=0.405 Sum_probs=134.2
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEE
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLV 128 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 128 (253)
+||+++|++|||||||+++|.+..+...+.++.. +.....+.+ ++..+.+.+||+||++.+......+++.+|++++|
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 79 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTV-DGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILV 79 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEE-CCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEE
Confidence 5899999999999999999999887655555554 444445556 66778999999999999998888899999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEecCCCCCccccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHHHHH
Q psy549 129 YAVDDASTWDVVKDLREQIVNKR-GLMVPIVVVGNKCELEFKDVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELL 207 (253)
Q Consensus 129 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 207 (253)
||++++.+|..+..|+..+.... ..++|+++|+||+|+.......+....+.. ..+++++++|+++|.|+++++++++
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~~~~~~~ 158 (161)
T cd01863 80 YDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFAR-KHNMLFIETSAKTRDGVQQAFEELV 158 (161)
T ss_pred EECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHH-HcCCEEEEEecCCCCCHHHHHHHHH
Confidence 99999999999999988887753 467999999999999866666667777777 5688999999999999999999988
Q ss_pred HH
Q psy549 208 AQ 209 (253)
Q Consensus 208 ~~ 209 (253)
+.
T Consensus 159 ~~ 160 (161)
T cd01863 159 EK 160 (161)
T ss_pred Hh
Confidence 75
No 91
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.96 E-value=1.6e-27 Score=182.46 Aligned_cols=162 Identities=24% Similarity=0.382 Sum_probs=137.3
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEE
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAF 125 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 125 (253)
...++|+++|++|||||||++++.++.+...+..+.. +.....+.+ ++..+.+.+||++|++.+...+..++..+|++
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 83 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEI-KGEKIKLQIWDTAGQERFRSITQSYYRSANAL 83 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEE-CCEEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence 4568999999999999999999998877655544444 566666777 77778899999999999999888999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHH
Q psy549 126 VLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFK 204 (253)
Q Consensus 126 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 204 (253)
++|||++++.+|..+..|+..+......++|+++|+||+|+.+. ++..+..+.+.. ....+++++|+++|.|+.++|+
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~-~~~~~~~~~Sa~~~~gv~~l~~ 162 (169)
T cd04114 84 ILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSD-AQDMYYLETSAKESDNVEKLFL 162 (169)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHH-HcCCeEEEeeCCCCCCHHHHHH
Confidence 99999999999999999998887766567999999999998754 556666777776 4458899999999999999999
Q ss_pred HHHHHH
Q psy549 205 ELLAQA 210 (253)
Q Consensus 205 ~l~~~~ 210 (253)
++++.+
T Consensus 163 ~i~~~~ 168 (169)
T cd04114 163 DLACRL 168 (169)
T ss_pred HHHHHh
Confidence 998764
No 92
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.96 E-value=3.6e-28 Score=186.28 Aligned_cols=162 Identities=17% Similarity=0.195 Sum_probs=131.7
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCCCC-CCccccceee-eeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCE
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDRFI-SRYKETVEEL-HRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADA 124 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~~~-~~~~~t~~~~-~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 124 (253)
.+.+||+++|++|||||||+++|+++.+. ..+.+|.... ....+.+ ++..+.+.+||++|.+.+..++..+++++|+
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~-~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~ 80 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEV-YGQEKYLILREVGEDEVAILLNDAELAACDV 80 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEE-CCeEEEEEEEecCCcccccccchhhhhcCCE
Confidence 46789999999999999999999999987 7787777643 3455666 7777889999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHH
Q psy549 125 FVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVF 203 (253)
Q Consensus 125 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 203 (253)
+++|||++++.+|+.+..|+..+.. ..++|+++|+||+|+.+. .......+.+++......++++||+++.|++++|
T Consensus 81 ~llv~d~~~~~s~~~~~~~~~~~~~--~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf 158 (169)
T cd01892 81 ACLVYDSSDPKSFSYCAEVYKKYFM--LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELF 158 (169)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHhcc--CCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHH
Confidence 9999999999999988888875532 246899999999998654 2222334555553322346999999999999999
Q ss_pred HHHHHHHH
Q psy549 204 KELLAQAK 211 (253)
Q Consensus 204 ~~l~~~~~ 211 (253)
+.+++.+.
T Consensus 159 ~~l~~~~~ 166 (169)
T cd01892 159 TKLATAAQ 166 (169)
T ss_pred HHHHHHhh
Confidence 99998874
No 93
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.96 E-value=1.4e-27 Score=190.50 Aligned_cols=161 Identities=29% Similarity=0.448 Sum_probs=132.5
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCCCC-CCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcc-cCCEEE
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDRFI-SRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIS-TADAFV 126 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~~~-~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~-~~d~~i 126 (253)
+||+++|++|||||||+++|+++.+. ..+.++.. +.+...+.+ ++..+.+.+||++|++ ......++. ++|+++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~-~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~ii 77 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSV-DGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFV 77 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEE-CCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEE
Confidence 58999999999999999999988875 55555554 666677777 7778899999999998 233445566 899999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHH
Q psy549 127 LVYAVDDASTWDVVKDLREQIVNKR-GLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFK 204 (253)
Q Consensus 127 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 204 (253)
+|||++++.+|..+..|+..+.... ..++|+++|+||+|+... .+..+.+..++. ..+++++++||+++.||+++|+
T Consensus 78 lV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~-~~~~~~~e~SA~~~~gv~~l~~ 156 (221)
T cd04148 78 VVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAV-VFDCKFIETSAGLQHNVDELLE 156 (221)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHH-HcCCeEEEecCCCCCCHHHHHH
Confidence 9999999999999999988877643 356999999999998654 555666677776 4567899999999999999999
Q ss_pred HHHHHHHHhc
Q psy549 205 ELLAQAKVQY 214 (253)
Q Consensus 205 ~l~~~~~~~~ 214 (253)
++++.+....
T Consensus 157 ~l~~~~~~~~ 166 (221)
T cd04148 157 GIVRQIRLRR 166 (221)
T ss_pred HHHHHHHhhh
Confidence 9999886543
No 94
>KOG0083|consensus
Probab=99.96 E-value=4.8e-30 Score=179.54 Aligned_cols=158 Identities=25% Similarity=0.455 Sum_probs=143.5
Q ss_pred EECCCCCCHHHHHHHHHhCCC-CCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEEEEC
Q psy549 54 VMGGARVGKSSIISQFLYDRF-ISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLVYAV 131 (253)
Q Consensus 54 iiG~~~~GKSsLi~~l~~~~~-~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 131 (253)
++|++++|||+|+-+|..+.| ..+.++|.+ ++..+.+.. ++..+++++|||+|+++|++.+..+|+++|+.+++||+
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~-~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDM-DDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceecc-CCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 689999999999999988776 556666766 666667777 88999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy549 132 DDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQA 210 (253)
Q Consensus 132 ~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 210 (253)
.+..||+++..|+.++..+....+.+.+++||+|+.+. .+..+..+.+++ ..++|++++||++|.|++..|..|++.+
T Consensus 81 ankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~-~y~ipfmetsaktg~nvd~af~~ia~~l 159 (192)
T KOG0083|consen 81 ANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAE-AYGIPFMETSAKTGFNVDLAFLAIAEEL 159 (192)
T ss_pred ccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHH-HHCCCceeccccccccHhHHHHHHHHHH
Confidence 99999999999999999988788999999999999764 788889999999 7899999999999999999999999988
Q ss_pred HHh
Q psy549 211 KVQ 213 (253)
Q Consensus 211 ~~~ 213 (253)
...
T Consensus 160 ~k~ 162 (192)
T KOG0083|consen 160 KKL 162 (192)
T ss_pred HHh
Confidence 665
No 95
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.96 E-value=9.8e-28 Score=186.20 Aligned_cols=168 Identities=15% Similarity=0.198 Sum_probs=129.5
Q ss_pred cceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEE
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVL 127 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 127 (253)
.+||+++|++|||||||++++..+.+.... +|.. +.....+...++..+.+.+|||+|++++..++..+++++|++++
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNTV-PTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCcC-CccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence 489999999999999999999998876543 3332 34444454435567899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHh-cCCCCCEEEEEecCCCCCccccHHHHHHHHH---h--cCCCcEEEeccCCCCCHHH
Q psy549 128 VYAVDDASTWDVVKDLREQIVNK-RGLMVPIVVVGNKCELEFKDVRREIAETIAL---Y--DWQCGFVECSAKENYNIVQ 201 (253)
Q Consensus 128 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~---~--~~~~~~~~~Sa~~~~~i~~ 201 (253)
|+|+++..++.....|+..+... ...++|+++|+||+|+... ...+....+.. . ....+++++||+++.|+++
T Consensus 82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 160 (183)
T cd04152 82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNA-LSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQE 160 (183)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCcccc-CCHHHHHHHhCccccCCCCceEEEEeecccCCCHHH
Confidence 99999999888888887776653 2356899999999998653 22232333321 0 1135688999999999999
Q ss_pred HHHHHHHHHHHhcccCh
Q psy549 202 VFKELLAQAKVQYNLSP 218 (253)
Q Consensus 202 l~~~l~~~~~~~~~~~~ 218 (253)
+|++|++.+....+..+
T Consensus 161 l~~~l~~~l~~~~~~~~ 177 (183)
T cd04152 161 GLEKLYEMILKRRKMLR 177 (183)
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 99999999976655443
No 96
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.96 E-value=1.6e-27 Score=180.59 Aligned_cols=157 Identities=45% Similarity=0.767 Sum_probs=137.6
Q ss_pred eEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEEEE
Q psy549 51 RVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLVYA 130 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 130 (253)
||+|+|++|||||||++++++..+...+.+++.+.+...+.+ ++..+.+++||+||++.+...+..+++.+|++++|||
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVV-DGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEE-CCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 699999999999999999999888888888877777777777 6667899999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHHHHHH
Q psy549 131 VDDASTWDVVKDLREQIVNKRG-LMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLA 208 (253)
Q Consensus 131 ~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 208 (253)
+++++++..+..|+..+..... ..+|+++|+||+|+... ....+.+..+.. ..+.+++++|++++.|+.++|++|++
T Consensus 80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~S~~~~~~i~~l~~~l~~ 158 (160)
T cd00876 80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAK-EWGCPFIETSAKDNINIDEVFKLLVR 158 (160)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHH-HcCCcEEEeccCCCCCHHHHHHHHHh
Confidence 9999999999999888887544 57999999999998873 556666777766 45589999999999999999999987
Q ss_pred H
Q psy549 209 Q 209 (253)
Q Consensus 209 ~ 209 (253)
.
T Consensus 159 ~ 159 (160)
T cd00876 159 E 159 (160)
T ss_pred h
Confidence 5
No 97
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.96 E-value=2.6e-27 Score=184.43 Aligned_cols=167 Identities=27% Similarity=0.388 Sum_probs=136.8
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEEE
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLVY 129 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 129 (253)
.||+|+|++|+|||||+++|..+.+...+..+....+...+.+ ++..+.+.+||++|++.+.......+..+|++++||
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRV-DGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEE-CCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 5899999999999999999998888766666666666666777 667788999999999988877777889999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHHhcCCCCCEEEEEecCCCCCc-----------cccHHHHHHHHHhcCCCcEEEeccCCCC
Q psy549 130 AVDDASTWDVVK-DLREQIVNKRGLMVPIVVVGNKCELEFK-----------DVRREIAETIALYDWQCGFVECSAKENY 197 (253)
Q Consensus 130 d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 197 (253)
++++.++|+.+. .|+..+.... +++|+++|+||+|+... .+..+.+..+++.....++++|||++|.
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 159 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRYC-PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGE 159 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCC
Confidence 999999999986 5888776644 56999999999998542 2334566777774444589999999999
Q ss_pred CHHHHHHHHHHHHHHhcccCh
Q psy549 198 NIVQVFKELLAQAKVQYNLSP 218 (253)
Q Consensus 198 ~i~~l~~~l~~~~~~~~~~~~ 218 (253)
|++++|+++.+.+...++.+|
T Consensus 160 ~v~~~f~~l~~~~~~~~~~~~ 180 (187)
T cd04129 160 GVDDVFEAATRAALLVRKSEP 180 (187)
T ss_pred CHHHHHHHHHHHHhcccCccc
Confidence 999999999998866655443
No 98
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.96 E-value=5.3e-27 Score=181.60 Aligned_cols=162 Identities=31% Similarity=0.538 Sum_probs=137.8
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEEE
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLVY 129 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 129 (253)
.||+|+|++|+|||||+++|.+..+...+.+++...+...+.+ ++..+.+.+||+||++++...+..++..++++++||
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRY-KGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEE-CCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 6899999999999999999999888777777776666667777 666788999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHHHHH
Q psy549 130 AVDDASTWDVVKDLREQIVNKR-GLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELL 207 (253)
Q Consensus 130 d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 207 (253)
|+++..+++.+..|+..+.... ..+.|+++|+||+|+... ....+....+.. .++.+++++|++++.|+.++|.+++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gv~~l~~~l~ 159 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAE-SWGAAFLESSARENENVEEAFELLI 159 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHH-HcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 9999999999999888877743 356899999999998754 344445566665 5668899999999999999999999
Q ss_pred HHHHHh
Q psy549 208 AQAKVQ 213 (253)
Q Consensus 208 ~~~~~~ 213 (253)
+.+...
T Consensus 160 ~~~~~~ 165 (180)
T cd04137 160 EEIEKV 165 (180)
T ss_pred HHHHHh
Confidence 988655
No 99
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.96 E-value=5.9e-27 Score=176.78 Aligned_cols=156 Identities=28% Similarity=0.479 Sum_probs=134.3
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEE
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLV 128 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 128 (253)
+||+++|++|||||||++++.+..+...+..|.. +.....+.. ++..+.+.+||+||+..+...+..+++++|++++|
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v 79 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEI-DGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILV 79 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEE-CCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEE
Confidence 5899999999999999999999998766555544 555566666 56678899999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCC-CccccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHHHHH
Q psy549 129 YAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELE-FKDVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELL 207 (253)
Q Consensus 129 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 207 (253)
+|++++.++..+..|+..+.......+|+++|+||+|+. ......+..+.+.. .+..+++++|++++.|+.++|++|+
T Consensus 80 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 80 YDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAK-ENGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHH-HcCCeEEEEecCCCCCHHHHHHHHh
Confidence 999999999999999998888765779999999999996 33556667777776 4688999999999999999999986
No 100
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.96 E-value=5.3e-27 Score=179.85 Aligned_cols=157 Identities=29% Similarity=0.481 Sum_probs=129.7
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEEE
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLVY 129 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 129 (253)
+||+++|++|||||||+++|+++.+...+.++..+.....+.. ++..+.+++||+||++++.......++.+|++++||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTV-DGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEE-CCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 5899999999999999999999998777777777666667777 677889999999999998888888889999999999
Q ss_pred ECCChhhHHHHHH-HHHHHHHhcCCCCCEEEEEecCCCCCccc------------cHHHHHHHHHhcCCCcEEEeccCCC
Q psy549 130 AVDDASTWDVVKD-LREQIVNKRGLMVPIVVVGNKCELEFKDV------------RREIAETIALYDWQCGFVECSAKEN 196 (253)
Q Consensus 130 d~~~~~s~~~~~~-~~~~~~~~~~~~~piilv~nK~Dl~~~~~------------~~~~~~~~~~~~~~~~~~~~Sa~~~ 196 (253)
|++++.+|..... |+..+.... .++|+++|+||+|+..... ..+.+..+.......+++++|+++|
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~ 158 (171)
T cd00157 80 SVDSPSSFENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQ 158 (171)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCC
Confidence 9999999887554 666555543 5799999999999876532 3455566666344448999999999
Q ss_pred CCHHHHHHHHHH
Q psy549 197 YNIVQVFKELLA 208 (253)
Q Consensus 197 ~~i~~l~~~l~~ 208 (253)
.|+.++|+++++
T Consensus 159 ~gi~~l~~~i~~ 170 (171)
T cd00157 159 EGVKEVFEEAIR 170 (171)
T ss_pred CCHHHHHHHHhh
Confidence 999999999875
No 101
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.95 E-value=8.4e-27 Score=178.19 Aligned_cols=159 Identities=28% Similarity=0.309 Sum_probs=123.8
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEEE
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLVY 129 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 129 (253)
+||+|+|++|||||||+++|.++.+...++.+.. .......+ ++..+.+.+||++|.+++...+..++..+|++++||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLP-EITIPADV-TPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCccc-ceEeeeee-cCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence 4899999999999999999999998765544433 23344445 567789999999999988888888889999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHHhcCCCCCEEEEEecCCCCCcccc---HHHHHHHHHhcCC-CcEEEeccCCCCCHHHHHH
Q psy549 130 AVDDASTWDVVK-DLREQIVNKRGLMVPIVVVGNKCELEFKDVR---REIAETIALYDWQ-CGFVECSAKENYNIVQVFK 204 (253)
Q Consensus 130 d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~ 204 (253)
|++++.+|+.+. .|...+.... .++|+++|+||+|+.+.... .+....+...... .++++|||+++.|++++|+
T Consensus 79 d~~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~ 157 (166)
T cd01893 79 SVDRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY 157 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHH
Confidence 999999999875 5666665543 57999999999999765332 2223333322222 4799999999999999999
Q ss_pred HHHHHHH
Q psy549 205 ELLAQAK 211 (253)
Q Consensus 205 ~l~~~~~ 211 (253)
.+.+.+.
T Consensus 158 ~~~~~~~ 164 (166)
T cd01893 158 YAQKAVL 164 (166)
T ss_pred HHHHHhc
Confidence 9988774
No 102
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.95 E-value=2.8e-27 Score=181.14 Aligned_cols=155 Identities=14% Similarity=0.146 Sum_probs=119.6
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEE
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVL 127 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 127 (253)
..++|+++|++|||||||+++|..+.+.. +.+|..... ..+.. ..+.+++||++|++++..++..+++++|++|+
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~-~~~~~---~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~ 82 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNV-ETVTY---KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 82 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccce-EEEEE---CCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 46899999999999999999999877753 334443222 22222 35789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHh-cCCCCCEEEEEecCCCCCccccHHHHHHHHH----hcCCCcEEEeccCCCCCHHHH
Q psy549 128 VYAVDDASTWDVVKDLREQIVNK-RGLMVPIVVVGNKCELEFKDVRREIAETIAL----YDWQCGFVECSAKENYNIVQV 202 (253)
Q Consensus 128 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~i~~l 202 (253)
|||++++.+|.....|+..+... ...++|+++|+||+|+... +..+.++.... ....++++++||++|.|+.++
T Consensus 83 v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~ 161 (168)
T cd04149 83 VVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDA-MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEG 161 (168)
T ss_pred EEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccC-CCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHH
Confidence 99999999998888877766542 2356899999999998753 33333333322 112347899999999999999
Q ss_pred HHHHHH
Q psy549 203 FKELLA 208 (253)
Q Consensus 203 ~~~l~~ 208 (253)
|++|++
T Consensus 162 ~~~l~~ 167 (168)
T cd04149 162 LTWLSS 167 (168)
T ss_pred HHHHhc
Confidence 999864
No 103
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.95 E-value=4.7e-27 Score=178.31 Aligned_cols=154 Identities=13% Similarity=0.190 Sum_probs=119.0
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEEE
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLVY 129 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 129 (253)
+||+++|.+|||||||++++..+.+.. +.+|..... ..+.. ..+.+.+||++|++++..++..+++++|++|+||
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~-~~pt~g~~~-~~~~~---~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~ 75 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVEY---KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcc-cCCCCCcce-EEEEE---CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 589999999999999999998887764 444544222 22333 3578999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHh-cCCCCCEEEEEecCCCCCccccHHHHHHHHH---hcCCCcEEEeccCCCCCHHHHHHH
Q psy549 130 AVDDASTWDVVKDLREQIVNK-RGLMVPIVVVGNKCELEFKDVRREIAETIAL---YDWQCGFVECSAKENYNIVQVFKE 205 (253)
Q Consensus 130 d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~~~i~~l~~~ 205 (253)
|+++..+|.....|+..+... ....+|+++|+||+|+.+.....+....+.. ....+.++++||++|.|++++|++
T Consensus 76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~ 155 (159)
T cd04150 76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDW 155 (159)
T ss_pred eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHH
Confidence 999999999888877766542 2245899999999999764333444444432 122346789999999999999999
Q ss_pred HHH
Q psy549 206 LLA 208 (253)
Q Consensus 206 l~~ 208 (253)
|.+
T Consensus 156 l~~ 158 (159)
T cd04150 156 LSN 158 (159)
T ss_pred Hhc
Confidence 864
No 104
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.95 E-value=4.7e-27 Score=182.10 Aligned_cols=163 Identities=16% Similarity=0.214 Sum_probs=124.5
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEE
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFV 126 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 126 (253)
...+||+++|++|||||||++++..+.+.. +.+|....+ ..+.. ..+.+++||++|++++..++..+++++|++|
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~-~~~~~---~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI 89 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNV-ETVEY---KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLI 89 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccce-EEEEE---CCEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 346899999999999999999998877754 444444222 23333 3478999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHh-cCCCCCEEEEEecCCCCCccccHHHHHHHHHh---cCCCcEEEeccCCCCCHHHH
Q psy549 127 LVYAVDDASTWDVVKDLREQIVNK-RGLMVPIVVVGNKCELEFKDVRREIAETIALY---DWQCGFVECSAKENYNIVQV 202 (253)
Q Consensus 127 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~~~i~~l 202 (253)
+|||++++.+|.....++..+... ...++|+++|+||.|+.......+....+... ...+.++++||++|.|+.++
T Consensus 90 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~ 169 (182)
T PTZ00133 90 FVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEG 169 (182)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHHH
Confidence 999999999998887777666442 22468999999999987643333444444321 11235779999999999999
Q ss_pred HHHHHHHHHHhc
Q psy549 203 FKELLAQAKVQY 214 (253)
Q Consensus 203 ~~~l~~~~~~~~ 214 (253)
|++|++.+...+
T Consensus 170 ~~~l~~~i~~~~ 181 (182)
T PTZ00133 170 LDWLSANIKKSM 181 (182)
T ss_pred HHHHHHHHHHhc
Confidence 999999886653
No 105
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.95 E-value=7.5e-27 Score=180.77 Aligned_cols=162 Identities=14% Similarity=0.180 Sum_probs=123.0
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEE
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFV 126 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 126 (253)
...+||+++|+++||||||++++..+.+.. +.+|.... ...+.. ..+.+++||++|++++..++..+++++|++|
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~-~~pt~g~~-~~~~~~---~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI 89 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN-VETVEY---KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCcc-ccCCccee-EEEEEE---CCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 356899999999999999999999877753 44444322 222333 4578999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHh-cCCCCCEEEEEecCCCCCccccHHHHHHHHHhc---CCCcEEEeccCCCCCHHHH
Q psy549 127 LVYAVDDASTWDVVKDLREQIVNK-RGLMVPIVVVGNKCELEFKDVRREIAETIALYD---WQCGFVECSAKENYNIVQV 202 (253)
Q Consensus 127 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~l 202 (253)
+|||+++..++.....++..+... ...++|+++|+||+|+.+....++..+.+.... ..+.++++||++|.|+.++
T Consensus 90 ~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~ 169 (181)
T PLN00223 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCceEEEeccCCCCCCHHHH
Confidence 999999999998877776665432 225689999999999977543333333332210 1234668999999999999
Q ss_pred HHHHHHHHHHh
Q psy549 203 FKELLAQAKVQ 213 (253)
Q Consensus 203 ~~~l~~~~~~~ 213 (253)
|++|++.+.++
T Consensus 170 ~~~l~~~~~~~ 180 (181)
T PLN00223 170 LDWLSNNIANK 180 (181)
T ss_pred HHHHHHHHhhc
Confidence 99999887553
No 106
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.95 E-value=7.6e-27 Score=178.95 Aligned_cols=159 Identities=16% Similarity=0.151 Sum_probs=124.0
Q ss_pred eEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEEEE
Q psy549 51 RVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLVYA 130 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 130 (253)
||+++|+++||||||+++|.+..+.. +.+|..... ..+.+ ..+.+.+||+||++++...+..+++.+|++++|+|
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~-~~~~~---~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 75 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNV-ETVEY---KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD 75 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeE-EEEEE---CCEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence 68999999999999999999987654 444443222 23333 34789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEecCCCCCccccHHHHHHHHHhcC-----CCcEEEeccCCCCCHHHHHH
Q psy549 131 VDDASTWDVVKDLREQIVNKR-GLMVPIVVVGNKCELEFKDVRREIAETIALYDW-----QCGFVECSAKENYNIVQVFK 204 (253)
Q Consensus 131 ~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~i~~l~~ 204 (253)
++++.++.....|+..+.... ..+.|+++|+||+|+... +..+....+..... .+.+++|||++|.||.++|+
T Consensus 76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~ 154 (169)
T cd04158 76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGA-LSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLD 154 (169)
T ss_pred CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccC-CCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHH
Confidence 999999999888888877532 245899999999999753 44444444433111 23688999999999999999
Q ss_pred HHHHHHHHhcc
Q psy549 205 ELLAQAKVQYN 215 (253)
Q Consensus 205 ~l~~~~~~~~~ 215 (253)
+|++.+.....
T Consensus 155 ~l~~~~~~~~~ 165 (169)
T cd04158 155 WLSRQLVAAGV 165 (169)
T ss_pred HHHHHHhhccc
Confidence 99988766533
No 107
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.95 E-value=1.6e-26 Score=178.13 Aligned_cols=158 Identities=15% Similarity=0.183 Sum_probs=121.4
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEE
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVL 127 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 127 (253)
..+||+++|++|||||||+++|..+.+.. +.+|..... ..+.. ..+.+.+||++|++++..++..+++++|++|+
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~~-~~~t~~~~~-~~~~~---~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~ 86 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGESVT-TIPTIGFNV-ETVTY---KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIF 86 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCCC-cCCccccce-EEEEE---CCEEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence 46999999999999999999998777743 444544222 23333 34789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHh-cCCCCCEEEEEecCCCCCccccHHHHHHHHHh---cCCCcEEEeccCCCCCHHHHH
Q psy549 128 VYAVDDASTWDVVKDLREQIVNK-RGLMVPIVVVGNKCELEFKDVRREIAETIALY---DWQCGFVECSAKENYNIVQVF 203 (253)
Q Consensus 128 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~~~i~~l~ 203 (253)
|||++++.++.....|+..+... ...++|+++|+||+|+.+.....+..+.+... ...+.++++||++|.|+.++|
T Consensus 87 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~ 166 (175)
T smart00177 87 VVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGL 166 (175)
T ss_pred EEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHHH
Confidence 99999999998888887776542 22568999999999997643333333333210 123457789999999999999
Q ss_pred HHHHHHH
Q psy549 204 KELLAQA 210 (253)
Q Consensus 204 ~~l~~~~ 210 (253)
+||.+.+
T Consensus 167 ~~l~~~~ 173 (175)
T smart00177 167 TWLSNNL 173 (175)
T ss_pred HHHHHHh
Confidence 9998775
No 108
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.95 E-value=1.9e-26 Score=177.42 Aligned_cols=157 Identities=20% Similarity=0.275 Sum_probs=121.1
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEE
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFV 126 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 126 (253)
...++|+++|++|||||||+++|.+..+. .+.+|.+ .....+.+ + .+.+.+||+||++.+..++..+++.+|+++
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~~-~~~~t~g-~~~~~~~~-~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 86 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDID-TISPTLG-FQIKTLEY-E--GYKLNIWDVGGQKTLRPYWRNYFESTDALI 86 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCC-CcCCccc-cceEEEEE-C--CEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 45689999999999999999999987553 3334433 33334445 3 368899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHh-cCCCCCEEEEEecCCCCCccccHHHHHHHHH---hcCCCcEEEeccCCCCCHHHH
Q psy549 127 LVYAVDDASTWDVVKDLREQIVNK-RGLMVPIVVVGNKCELEFKDVRREIAETIAL---YDWQCGFVECSAKENYNIVQV 202 (253)
Q Consensus 127 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~~~i~~l 202 (253)
+|||++++.+|.....|+..+... ...++|+++|+||+|+.+.....+..+.+.. ....++++++||++|.|++++
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 166 (173)
T cd04154 87 WVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQG 166 (173)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCCCcCHHHH
Confidence 999999999998888887776542 3357999999999999764332333233321 124568999999999999999
Q ss_pred HHHHHH
Q psy549 203 FKELLA 208 (253)
Q Consensus 203 ~~~l~~ 208 (253)
|+++++
T Consensus 167 ~~~l~~ 172 (173)
T cd04154 167 IDWLVD 172 (173)
T ss_pred HHHHhc
Confidence 999864
No 109
>KOG0393|consensus
Probab=99.95 E-value=1.8e-27 Score=181.27 Aligned_cols=165 Identities=26% Similarity=0.403 Sum_probs=148.4
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEE
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVL 127 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 127 (253)
..+||+|||+.++|||+|+-.+..+.|+..|.+|..+.+...+.+.|+..+.+.+|||+|+++|+.+++..|.++|.+++
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~ 82 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLL 82 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEEE
Confidence 45899999999999999999999999999999999999999999944999999999999999999999889999999999
Q ss_pred EEECCChhhHHHH-HHHHHHHHHhcCCCCCEEEEEecCCCCCc-------------cccHHHHHHHHHhcCCCcEEEecc
Q psy549 128 VYAVDDASTWDVV-KDLREQIVNKRGLMVPIVVVGNKCELEFK-------------DVRREIAETIALYDWQCGFVECSA 193 (253)
Q Consensus 128 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~-------------~~~~~~~~~~~~~~~~~~~~~~Sa 193 (253)
+|++.++.||+++ ..|+.++..+. ++.|+++||+|.||.++ .+..+.+..+++..+...|+||||
T Consensus 83 cfsv~~p~S~~nv~~kW~pEi~~~c-p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcSa 161 (198)
T KOG0393|consen 83 CFSVVSPESFENVKSKWIPEIKHHC-PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECSA 161 (198)
T ss_pred EEEcCChhhHHHHHhhhhHHHHhhC-CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeehh
Confidence 9999999999995 55877766655 89999999999999853 466778888998777789999999
Q ss_pred CCCCCHHHHHHHHHHHHHHh
Q psy549 194 KENYNIVQVFKELLAQAKVQ 213 (253)
Q Consensus 194 ~~~~~i~~l~~~l~~~~~~~ 213 (253)
++..|+.++|+..+..+...
T Consensus 162 ~tq~~v~~vF~~a~~~~l~~ 181 (198)
T KOG0393|consen 162 LTQKGVKEVFDEAIRAALRP 181 (198)
T ss_pred hhhCCcHHHHHHHHHHHhcc
Confidence 99999999999999988554
No 110
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.95 E-value=1.6e-25 Score=178.10 Aligned_cols=166 Identities=22% Similarity=0.362 Sum_probs=137.2
Q ss_pred CCCCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccC
Q psy549 44 GLQKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTA 122 (253)
Q Consensus 44 ~~~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~ 122 (253)
......+||+++|++|||||||+++++.+.+...+.+|.. +.....+.. ++..+.+.+||++|++++..++..++..+
T Consensus 4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~ 82 (215)
T PTZ00132 4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYT-NCGPICFNVWDTAGQEKFGGLRDGYYIKG 82 (215)
T ss_pred ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEE-CCeEEEEEEEECCCchhhhhhhHHHhccC
Confidence 3456679999999999999999999998888777766665 444444445 66789999999999999999999999999
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHHhcCCCcEEEeccCCCCCHHHH
Q psy549 123 DAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIALYDWQCGFVECSAKENYNIVQV 202 (253)
Q Consensus 123 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 202 (253)
+++++|||+++..+|..+..|+..+.... .++|+++|+||+|+.......+.. .+.. ..++.++++|+++|.|++++
T Consensus 83 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~i~lv~nK~Dl~~~~~~~~~~-~~~~-~~~~~~~e~Sa~~~~~v~~~ 159 (215)
T PTZ00132 83 QCAIIMFDVTSRITYKNVPNWHRDIVRVC-ENIPIVLVGNKVDVKDRQVKARQI-TFHR-KKNLQYYDISAKSNYNFEKP 159 (215)
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccCccccCCHHHH-HHHH-HcCCEEEEEeCCCCCCHHHH
Confidence 99999999999999999999998887654 568999999999987654444443 3444 45678999999999999999
Q ss_pred HHHHHHHHHHh
Q psy549 203 FKELLAQAKVQ 213 (253)
Q Consensus 203 ~~~l~~~~~~~ 213 (253)
|.+|++.+...
T Consensus 160 f~~ia~~l~~~ 170 (215)
T PTZ00132 160 FLWLARRLTND 170 (215)
T ss_pred HHHHHHHHhhc
Confidence 99999988654
No 111
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.95 E-value=1.2e-26 Score=176.98 Aligned_cols=151 Identities=17% Similarity=0.257 Sum_probs=121.4
Q ss_pred EEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEEEEC
Q psy549 52 VVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLVYAV 131 (253)
Q Consensus 52 I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 131 (253)
|+++|++|||||||+++|.+..+...+.+|.... ...+ ++..+.+.+||++|++++..++..+++++|++++|||.
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~---~~~i-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 77 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFN---SVAI-PTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDS 77 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcc---eEEE-eeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEEC
Confidence 7999999999999999999988776666665422 2334 44568899999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHH-----HHHHHHhcCCCcEEEeccCC------CCCHH
Q psy549 132 DDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREI-----AETIALYDWQCGFVECSAKE------NYNIV 200 (253)
Q Consensus 132 ~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~-----~~~~~~~~~~~~~~~~Sa~~------~~~i~ 200 (253)
++..+|.....|+..+.... .++|+++|+||+|+.......++ +..++. ..++++++|||++ +.||.
T Consensus 78 t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~Sa~~~~s~~~~~~v~ 155 (164)
T cd04162 78 ADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARSVQEIHKELELEPIAR-GRRWILQGTSLDDDGSPSRMEAVK 155 (164)
T ss_pred CCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcC-CCceEEEEeeecCCCChhHHHHHH
Confidence 99999988888887776433 67999999999998765322221 233443 4567889999988 99999
Q ss_pred HHHHHHHH
Q psy549 201 QVFKELLA 208 (253)
Q Consensus 201 ~l~~~l~~ 208 (253)
++|+.++.
T Consensus 156 ~~~~~~~~ 163 (164)
T cd04162 156 DLLSQLIN 163 (164)
T ss_pred HHHHHHhc
Confidence 99998763
No 112
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.94 E-value=2.6e-25 Score=174.19 Aligned_cols=147 Identities=17% Similarity=0.257 Sum_probs=119.0
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcC----CCcEEEEEEEeCCCCCCChhhHHHhcccCCE
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELP----DGAQLTLDILDTSGAYQFPAMRELSISTADA 124 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~----~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 124 (253)
+||+++|+++||||||+++|+++.+...+.+|.. +.....+.+. ++..+.++|||++|+++|..++..+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 5899999999999999999999998877777765 4444445542 3567899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhc-------------------CCCCCEEEEEecCCCCCc-cccH----HHHHHHH
Q psy549 125 FVLVYAVDDASTWDVVKDLREQIVNKR-------------------GLMVPIVVVGNKCELEFK-DVRR----EIAETIA 180 (253)
Q Consensus 125 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-------------------~~~~piilv~nK~Dl~~~-~~~~----~~~~~~~ 180 (253)
+|+|||++++.||+.+..|+..+.... ..++|+++|+||.|+.+. .+.. .....++
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia 160 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA 160 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence 999999999999999999999887632 246899999999998654 2222 1234555
Q ss_pred HhcCCCcEEEeccCCCC
Q psy549 181 LYDWQCGFVECSAKENY 197 (253)
Q Consensus 181 ~~~~~~~~~~~Sa~~~~ 197 (253)
+ ..+.+.++.++.++.
T Consensus 161 ~-~~~~~~i~~~c~~~~ 176 (202)
T cd04102 161 E-QGNAEEINLNCTNGR 176 (202)
T ss_pred H-hcCCceEEEecCCcc
Confidence 5 678888888887654
No 113
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.94 E-value=6.9e-26 Score=172.15 Aligned_cols=154 Identities=23% Similarity=0.229 Sum_probs=116.8
Q ss_pred eEEEECCCCCCHHHHHHHHHhCCC-CCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEEE
Q psy549 51 RVVVMGGARVGKSSIISQFLYDRF-ISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLVY 129 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 129 (253)
+|+++|++|||||||+++|.+..+ ...+.+|.... ...+. ...+.+++||+||++++..++..+++++|++|+|+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~-~~~~~---~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 76 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFN-VESFE---KGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccc-eEEEE---ECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence 589999999999999999998753 44455554421 12222 23578899999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhc---CCCCCEEEEEecCCCCCccccHHHHHHHHHh---cCCCcEEEeccCCCCCHHHHH
Q psy549 130 AVDDASTWDVVKDLREQIVNKR---GLMVPIVVVGNKCELEFKDVRREIAETIALY---DWQCGFVECSAKENYNIVQVF 203 (253)
Q Consensus 130 d~~~~~s~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~~~i~~l~ 203 (253)
|++++.++.....|+..+.... ..++|+++|+||+|+.......+....+... ....+++++||++|.|++++|
T Consensus 77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~ 156 (162)
T cd04157 77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGV 156 (162)
T ss_pred eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHH
Confidence 9999999888777877665532 2569999999999987643323333332211 123468999999999999999
Q ss_pred HHHHH
Q psy549 204 KELLA 208 (253)
Q Consensus 204 ~~l~~ 208 (253)
++|.+
T Consensus 157 ~~l~~ 161 (162)
T cd04157 157 QWLQA 161 (162)
T ss_pred HHHhc
Confidence 99864
No 114
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.94 E-value=1.5e-25 Score=172.61 Aligned_cols=156 Identities=19% Similarity=0.256 Sum_probs=120.0
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEE
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVL 127 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 127 (253)
..++|+++|++|+|||||++++..+.+... .+|.... ...+.+ + .+.+.+||+||++.+...+..+++++|++++
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~~-~~t~~~~-~~~~~~-~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~ 88 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVHT-SPTIGSN-VEEIVY-K--NIRFLMWDIGGQESLRSSWNTYYTNTDAVIL 88 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCCc-CCccccc-eEEEEE-C--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence 358999999999999999999998887643 3343322 233444 2 4689999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEecCCCCCccccHHHHHHHHH---hcCCCcEEEeccCCCCCHHHHH
Q psy549 128 VYAVDDASTWDVVKDLREQIVNKR-GLMVPIVVVGNKCELEFKDVRREIAETIAL---YDWQCGFVECSAKENYNIVQVF 203 (253)
Q Consensus 128 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~~~i~~l~ 203 (253)
|+|++++.++.....++..+.... ..++|+++|+||+|+.+....+++.+.+.. ....++++++||++|.|++++|
T Consensus 89 V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~ 168 (174)
T cd04153 89 VIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGL 168 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecccCCCCCHHHHH
Confidence 999999998887777666665432 246899999999998764333334444431 1234578999999999999999
Q ss_pred HHHHH
Q psy549 204 KELLA 208 (253)
Q Consensus 204 ~~l~~ 208 (253)
++|++
T Consensus 169 ~~l~~ 173 (174)
T cd04153 169 DWIAS 173 (174)
T ss_pred HHHhc
Confidence 99875
No 115
>KOG4252|consensus
Probab=99.94 E-value=6.2e-27 Score=171.95 Aligned_cols=175 Identities=23% Similarity=0.342 Sum_probs=152.9
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCE
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADA 124 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 124 (253)
....+|++|+|..++||+|+|++++.+-|..++..|+. ++....+.+ ++..+.+.+||++|+++|+..+..+|++|.+
T Consensus 17 ~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v-~~Edvr~mlWdtagqeEfDaItkAyyrgaqa 95 (246)
T KOG4252|consen 17 YERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKV-LIEDVRSMLWDTAGQEEFDAITKAYYRGAQA 95 (246)
T ss_pred hhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHh-hHHHHHHHHHHhccchhHHHHHHHHhccccc
Confidence 45678999999999999999999999999998888877 666666666 6667788999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHH
Q psy549 125 FVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVF 203 (253)
Q Consensus 125 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 203 (253)
.++||+.+|..||+.+..|++.+.... .++|.++|-||+|+.++ ++.....+.+++ .....++.+|++...|+..+|
T Consensus 96 ~vLVFSTTDr~SFea~~~w~~kv~~e~-~~IPtV~vqNKIDlveds~~~~~evE~lak-~l~~RlyRtSvked~NV~~vF 173 (246)
T KOG4252|consen 96 SVLVFSTTDRYSFEATLEWYNKVQKET-ERIPTVFVQNKIDLVEDSQMDKGEVEGLAK-KLHKRLYRTSVKEDFNVMHVF 173 (246)
T ss_pred eEEEEecccHHHHHHHHHHHHHHHHHh-ccCCeEEeeccchhhHhhhcchHHHHHHHH-HhhhhhhhhhhhhhhhhHHHH
Confidence 999999999999999999999988744 67999999999999877 677777888887 677888999999999999999
Q ss_pred HHHHHHHHHhcccChhhccc
Q psy549 204 KELLAQAKVQYNLSPAVRRR 223 (253)
Q Consensus 204 ~~l~~~~~~~~~~~~~~~~~ 223 (253)
.+|++.+....+.+.....+
T Consensus 174 ~YLaeK~~q~~kq~~~~~~~ 193 (246)
T KOG4252|consen 174 AYLAEKLTQQKKQSLNANER 193 (246)
T ss_pred HHHHHHHHHHHHHHhhhchh
Confidence 99999998876665443433
No 116
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.93 E-value=5.1e-25 Score=167.12 Aligned_cols=154 Identities=21% Similarity=0.326 Sum_probs=117.0
Q ss_pred eEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEEEE
Q psy549 51 RVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLVYA 130 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 130 (253)
+|+|+|++|||||||+++|.++.+... .+|.+ .....+.. + ..+.+.+||++|++.+...+..++..+|++++|+|
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~~-~~~~~~~~-~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D 76 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVG-FNVEMLQL-E-KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD 76 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccc-cCccC-cceEEEEe-C-CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 689999999999999999999887543 33333 22233333 2 34789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEecCCCCCccccHHHHHHHHHh----cCCCcEEEeccCCCCCHHHHHHH
Q psy549 131 VDDASTWDVVKDLREQIVNKR-GLMVPIVVVGNKCELEFKDVRREIAETIALY----DWQCGFVECSAKENYNIVQVFKE 205 (253)
Q Consensus 131 ~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~i~~l~~~ 205 (253)
.+++.++.....|+..+.... ..++|+++|+||+|+.......+....+... ..++++++|||++|.|++++|++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~ 156 (160)
T cd04156 77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRK 156 (160)
T ss_pred CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHH
Confidence 999998888888877766532 2569999999999986532223333222110 12357899999999999999999
Q ss_pred HHH
Q psy549 206 LLA 208 (253)
Q Consensus 206 l~~ 208 (253)
|.+
T Consensus 157 i~~ 159 (160)
T cd04156 157 LAS 159 (160)
T ss_pred Hhc
Confidence 864
No 117
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.93 E-value=3.8e-25 Score=167.62 Aligned_cols=153 Identities=17% Similarity=0.201 Sum_probs=113.8
Q ss_pred eEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEEEE
Q psy549 51 RVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLVYA 130 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 130 (253)
||+++|++++|||||++++..+.+... .+|..... ..+. ...+.+++||+||++.+..++..++..+|++|+|+|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~-~~t~~~~~-~~~~---~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d 75 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTT-IPTIGFNV-ETVT---YKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD 75 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCc-CCccCcCe-EEEE---ECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence 689999999999999999988776532 33332211 2222 345789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHH-hcCCCCCEEEEEecCCCCCccccHHHHHHHHHh---cCCCcEEEeccCCCCCHHHHHHHH
Q psy549 131 VDDASTWDVVKDLREQIVN-KRGLMVPIVVVGNKCELEFKDVRREIAETIALY---DWQCGFVECSAKENYNIVQVFKEL 206 (253)
Q Consensus 131 ~~~~~s~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~~~i~~l~~~l 206 (253)
++++.++.....++..+.. ....++|+++|+||+|+.+.....+....+... ....+++++||++|.|++++|++|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 155 (158)
T cd04151 76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWL 155 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHH
Confidence 9998887766665554433 223568999999999987543233333333211 123469999999999999999998
Q ss_pred HH
Q psy549 207 LA 208 (253)
Q Consensus 207 ~~ 208 (253)
++
T Consensus 156 ~~ 157 (158)
T cd04151 156 VN 157 (158)
T ss_pred hc
Confidence 75
No 118
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.93 E-value=4e-25 Score=168.90 Aligned_cols=155 Identities=19% Similarity=0.213 Sum_probs=115.4
Q ss_pred eEEEECCCCCCHHHHHHHHHhCCCC-----CCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEE
Q psy549 51 RVVVMGGARVGKSSIISQFLYDRFI-----SRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAF 125 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~~~~~-----~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 125 (253)
+|+|+|++|+|||||+++|.+.... .....++.......+.+ + .+.+.+||+||++.+..++..+++.+|++
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~-~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 77 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEV-G--NARLKFWDLGGQESLRSLWDKYYAECHAI 77 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEE-C--CEEEEEEECCCChhhHHHHHHHhCCCCEE
Confidence 6899999999999999999864321 11111222222334445 3 36889999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHh-cCCCCCEEEEEecCCCCCccccHHHHHHHHHh-----cCCCcEEEeccCCCCCH
Q psy549 126 VLVYAVDDASTWDVVKDLREQIVNK-RGLMVPIVVVGNKCELEFKDVRREIAETIALY-----DWQCGFVECSAKENYNI 199 (253)
Q Consensus 126 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i 199 (253)
++|+|+++..++.....|+..+... ...++|+++|+||+|+.......+..+.+... ...++++++||++|.|+
T Consensus 78 v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv 157 (167)
T cd04160 78 IYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGV 157 (167)
T ss_pred EEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeCCCCcCH
Confidence 9999999998888887787776653 23569999999999987653333333333221 13458999999999999
Q ss_pred HHHHHHHHH
Q psy549 200 VQVFKELLA 208 (253)
Q Consensus 200 ~~l~~~l~~ 208 (253)
++++++|++
T Consensus 158 ~e~~~~l~~ 166 (167)
T cd04160 158 REGIEWLVE 166 (167)
T ss_pred HHHHHHHhc
Confidence 999999875
No 119
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.93 E-value=2.7e-25 Score=169.97 Aligned_cols=153 Identities=22% Similarity=0.273 Sum_probs=118.9
Q ss_pred eEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEEEE
Q psy549 51 RVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLVYA 130 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 130 (253)
+|+++|++|||||||+++|.+. +...+.+|.... ...+.+ ..+.+++||++|++++..++..+++++|++++|||
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~-~~~~~~---~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D 75 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT-PTKLRL---DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD 75 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce-EEEEEE---CCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence 4899999999999999999976 555555554432 334444 34789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEecCCCCCccccHHHHHHH-----HHh-cCCCcEEEeccCCC------C
Q psy549 131 VDDASTWDVVKDLREQIVNKR-GLMVPIVVVGNKCELEFKDVRREIAETI-----ALY-DWQCGFVECSAKEN------Y 197 (253)
Q Consensus 131 ~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~-----~~~-~~~~~~~~~Sa~~~------~ 197 (253)
+++..++..+..|+..+.... ..++|+++|+||+|+.+.....++.+.+ +.. ...+++++|||++| .
T Consensus 76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~ 155 (167)
T cd04161 76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDP 155 (167)
T ss_pred CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcccc
Confidence 999999999888888776542 2568999999999997754333333322 211 23457888999998 8
Q ss_pred CHHHHHHHHHH
Q psy549 198 NIVQVFKELLA 208 (253)
Q Consensus 198 ~i~~l~~~l~~ 208 (253)
|+.+.|+||.+
T Consensus 156 g~~~~~~wl~~ 166 (167)
T cd04161 156 SIVEGLRWLLA 166 (167)
T ss_pred CHHHHHHHHhc
Confidence 99999999974
No 120
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.93 E-value=1e-24 Score=170.29 Aligned_cols=157 Identities=17% Similarity=0.238 Sum_probs=121.4
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEE
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFV 126 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 126 (253)
...++|+|+|++|||||||++++.++.+. .+.+|.. .....+.+ ++ +.+.+||+||+..+...+..+++.+|+++
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~-~~~~~i~~-~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~ii 91 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLH-PTSEELTI-GN--IKFKTFDLGGHEQARRLWKDYFPEVDGIV 91 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccC-cceEEEEE-CC--EEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 45799999999999999999999988764 2333332 23345555 43 67899999999999888889999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEecCCCCCccccHHHHHHHHHh---------------cCCCcEEE
Q psy549 127 LVYAVDDASTWDVVKDLREQIVNKR-GLMVPIVVVGNKCELEFKDVRREIAETIALY---------------DWQCGFVE 190 (253)
Q Consensus 127 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~---------------~~~~~~~~ 190 (253)
+|+|+++..++.....|+..+.... ..+.|+++|+||+|+... +..+..+..... ...+++++
T Consensus 92 lV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (190)
T cd00879 92 FLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGA-VSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFM 170 (190)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCC-cCHHHHHHHhCcccccccccccccccCceeEEEEE
Confidence 9999999988888777777776532 256999999999998753 333333333321 12356899
Q ss_pred eccCCCCCHHHHHHHHHHH
Q psy549 191 CSAKENYNIVQVFKELLAQ 209 (253)
Q Consensus 191 ~Sa~~~~~i~~l~~~l~~~ 209 (253)
|||++|.|+.++|++|++.
T Consensus 171 ~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 171 CSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred eEecCCCChHHHHHHHHhh
Confidence 9999999999999999875
No 121
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.93 E-value=1.7e-24 Score=168.09 Aligned_cols=158 Identities=16% Similarity=0.261 Sum_probs=120.5
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEE
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFV 126 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 126 (253)
...++|+++|.+|||||||++++.++.+.. +.+| .......+.+ + .+.+.+||+||++.+...+..++.++|+++
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t-~~~~~~~~~~-~--~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii 89 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPT-QHPTSEELAI-G--NIKFTTFDLGGHQQARRLWKDYFPEVNGIV 89 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCc-cccceEEEEE-C--CEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 456999999999999999999999887642 2222 2222333444 3 367899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHh-cCCCCCEEEEEecCCCCCccccHHHHHHHHHhc----------CCCcEEEeccCC
Q psy549 127 LVYAVDDASTWDVVKDLREQIVNK-RGLMVPIVVVGNKCELEFKDVRREIAETIALYD----------WQCGFVECSAKE 195 (253)
Q Consensus 127 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~----------~~~~~~~~Sa~~ 195 (253)
+|+|++++.++.....++..+... ...++|+++|+||+|+......+++.+.+.... ....+++|||++
T Consensus 90 ~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~ 169 (184)
T smart00178 90 YLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVR 169 (184)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCceeEEEEeeccc
Confidence 999999999888877777666542 225689999999999876433444444442211 244589999999
Q ss_pred CCCHHHHHHHHHHH
Q psy549 196 NYNIVQVFKELLAQ 209 (253)
Q Consensus 196 ~~~i~~l~~~l~~~ 209 (253)
+.|++++++||...
T Consensus 170 ~~g~~~~~~wl~~~ 183 (184)
T smart00178 170 RMGYGEGFKWLSQY 183 (184)
T ss_pred CCChHHHHHHHHhh
Confidence 99999999999764
No 122
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.93 E-value=2.7e-24 Score=162.83 Aligned_cols=153 Identities=17% Similarity=0.276 Sum_probs=118.6
Q ss_pred eEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEEEE
Q psy549 51 RVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLVYA 130 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 130 (253)
||+++|.+|||||||++++++..+.. +..+.. .....+.+ + .+.+.+||+||++.+...+..++..+|++++|||
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~-~~~t~~-~~~~~~~~-~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D 75 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVT-TIPTIG-FNVETVEY-K--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD 75 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCcC-cceEEEEE-C--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence 68999999999999999999987432 223332 22223333 2 4689999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEecCCCCCccccHHHHHHHHH---hcCCCcEEEeccCCCCCHHHHHHHH
Q psy549 131 VDDASTWDVVKDLREQIVNKR-GLMVPIVVVGNKCELEFKDVRREIAETIAL---YDWQCGFVECSAKENYNIVQVFKEL 206 (253)
Q Consensus 131 ~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~~~i~~l~~~l 206 (253)
++++.++.....|+..+.... ..+.|+++|+||+|+.......+....+.. ....++++++|+++|.|++++|++|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l 155 (158)
T cd00878 76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWL 155 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHH
Confidence 999999988888777666632 357899999999998765433334443332 1345689999999999999999998
Q ss_pred HH
Q psy549 207 LA 208 (253)
Q Consensus 207 ~~ 208 (253)
..
T Consensus 156 ~~ 157 (158)
T cd00878 156 LQ 157 (158)
T ss_pred hh
Confidence 75
No 123
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.92 E-value=4.8e-24 Score=163.31 Aligned_cols=157 Identities=18% Similarity=0.178 Sum_probs=115.5
Q ss_pred eEEEECCCCCCHHHHHHHHHhCCC-CCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCC----ChhhHHHh---cccC
Q psy549 51 RVVVMGGARVGKSSIISQFLYDRF-ISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQ----FPAMRELS---ISTA 122 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----~~~~~~~~---~~~~ 122 (253)
+|+|+|.+|||||||+++|.+... +...+.++.......+.+ ++ ...+.+|||||..+ +..+...+ +..+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~-~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRV-DD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIERT 79 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEc-CC-CCeEEEEecCcccCcccccCCchHHHHHHHHhC
Confidence 689999999999999999997654 233344444444445555 32 24789999999642 22223333 4469
Q ss_pred CEEEEEEECCCh-hhHHHHHHHHHHHHHhcC--CCCCEEEEEecCCCCCccccHHHHHHHHHhcCCCcEEEeccCCCCCH
Q psy549 123 DAFVLVYAVDDA-STWDVVKDLREQIVNKRG--LMVPIVVVGNKCELEFKDVRREIAETIALYDWQCGFVECSAKENYNI 199 (253)
Q Consensus 123 d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 199 (253)
|++++|+|++++ .+++.+..|.+.+..... ..+|+++|+||+|+.......+....+.......+++++|++++.|+
T Consensus 80 d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 159 (170)
T cd01898 80 RLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKELWGKPVFPISALTGEGL 159 (170)
T ss_pred CEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhhCCCCCEEEEecCCCCCH
Confidence 999999999999 788888888888776532 36899999999999765444444444444234678999999999999
Q ss_pred HHHHHHHHHH
Q psy549 200 VQVFKELLAQ 209 (253)
Q Consensus 200 ~~l~~~l~~~ 209 (253)
+++|++|.+.
T Consensus 160 ~~l~~~i~~~ 169 (170)
T cd01898 160 DELLRKLAEL 169 (170)
T ss_pred HHHHHHHHhh
Confidence 9999998865
No 124
>PLN00023 GTP-binding protein; Provisional
Probab=99.92 E-value=1e-23 Score=173.08 Aligned_cols=142 Identities=20% Similarity=0.270 Sum_probs=117.2
Q ss_pred CCCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcC------------CCcEEEEEEEeCCCCCCC
Q psy549 45 LQKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELP------------DGAQLTLDILDTSGAYQF 111 (253)
Q Consensus 45 ~~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~------------~~~~~~~~l~D~~g~~~~ 111 (253)
+....+||+|+|+.|||||||+++|+++.+...+..|.. ++..+.+.+. ++..+.++|||++|+++|
T Consensus 17 ~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErf 96 (334)
T PLN00023 17 PPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERY 96 (334)
T ss_pred CCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhh
Confidence 345669999999999999999999999998777777776 4445555552 135788999999999999
Q ss_pred hhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcC------------CCCCEEEEEecCCCCCcc-------cc
Q psy549 112 PAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRG------------LMVPIVVVGNKCELEFKD-------VR 172 (253)
Q Consensus 112 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~------------~~~piilv~nK~Dl~~~~-------~~ 172 (253)
..++..++++++++|+|||+++..+|+.+..|+..+..... .++|++||+||+|+.... +.
T Consensus 97 rsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~ 176 (334)
T PLN00023 97 KDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNL 176 (334)
T ss_pred hhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccccccccccccc
Confidence 99999999999999999999999999999999999987531 258999999999996541 35
Q ss_pred HHHHHHHHHhcCCC
Q psy549 173 REIAETIALYDWQC 186 (253)
Q Consensus 173 ~~~~~~~~~~~~~~ 186 (253)
.+.++.+++...-+
T Consensus 177 ~e~a~~~A~~~g~l 190 (334)
T PLN00023 177 VDAARQWVEKQGLL 190 (334)
T ss_pred HHHHHHHHHHcCCC
Confidence 78888888854333
No 125
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.92 E-value=1.7e-23 Score=157.88 Aligned_cols=154 Identities=24% Similarity=0.285 Sum_probs=118.7
Q ss_pred eEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEEEE
Q psy549 51 RVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLVYA 130 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 130 (253)
.|+|+|++|||||||+++|.+..+...+.++...... .+.. + .+.+.+||+||+..+...+..++..+|++++|+|
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~-~~~~-~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 76 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR-KVTK-G--NVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVD 76 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE-EEEE-C--CEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEE
Confidence 3899999999999999999999887766666553222 3333 3 2789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHh-cCCCCCEEEEEecCCCCCccccHHHHHHHHH---hcCCCcEEEeccCCCCCHHHHHHHH
Q psy549 131 VDDASTWDVVKDLREQIVNK-RGLMVPIVVVGNKCELEFKDVRREIAETIAL---YDWQCGFVECSAKENYNIVQVFKEL 206 (253)
Q Consensus 131 ~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~~~i~~l~~~l 206 (253)
+++..++.....|+..+... ...++|+++|+||+|+.+.....+..+.+.. ....++++++|++++.|+++++++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 156 (159)
T cd04159 77 AADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWL 156 (159)
T ss_pred CCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHH
Confidence 99998888777776665542 2256899999999998764332233333321 1234678999999999999999998
Q ss_pred HH
Q psy549 207 LA 208 (253)
Q Consensus 207 ~~ 208 (253)
.+
T Consensus 157 ~~ 158 (159)
T cd04159 157 IK 158 (159)
T ss_pred hh
Confidence 75
No 126
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.92 E-value=3.2e-23 Score=158.48 Aligned_cols=155 Identities=19% Similarity=0.191 Sum_probs=109.2
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCCCC-CCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCCh---------hhHHHhc
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDRFI-SRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFP---------AMRELSI 119 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~---------~~~~~~~ 119 (253)
.+|+++|++|+|||||+++|.+..+. ..++.++.......+.. ..+.+++|||||..... .......
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 77 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDY---KYLRWQVIDTPGLLDRPLEERNTIEMQAITALA 77 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEcc---CceEEEEEECCCcCCccccCCchHHHHHHHHHH
Confidence 47999999999999999999998763 33344444444444443 24689999999974211 1111112
Q ss_pred ccCCEEEEEEECCChhhH--HHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHHhcCCCcEEEeccCCCC
Q psy549 120 STADAFVLVYAVDDASTW--DVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIALYDWQCGFVECSAKENY 197 (253)
Q Consensus 120 ~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 197 (253)
..+|++++|+|+++..++ .....|+..+.... .++|+++|+||+|+.......+ .+.+.. ....++++|||++|.
T Consensus 78 ~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~-~~~~~~-~~~~~~~~~Sa~~~~ 154 (168)
T cd01897 78 HLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNKIDLLTFEDLSE-IEEEEE-LEGEEVLKISTLTEE 154 (168)
T ss_pred hccCcEEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEccccCchhhHHH-HHHhhh-hccCceEEEEecccC
Confidence 346899999999987653 45556777665432 4689999999999876432222 344444 456789999999999
Q ss_pred CHHHHHHHHHHHH
Q psy549 198 NIVQVFKELLAQA 210 (253)
Q Consensus 198 ~i~~l~~~l~~~~ 210 (253)
|++++|+++.+.+
T Consensus 155 gi~~l~~~l~~~~ 167 (168)
T cd01897 155 GVDEVKNKACELL 167 (168)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998876
No 127
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.91 E-value=4.3e-23 Score=173.02 Aligned_cols=162 Identities=17% Similarity=0.132 Sum_probs=125.2
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCCC-CCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCC----hhhHH---Hhc
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDRF-ISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQF----PAMRE---LSI 119 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~----~~~~~---~~~ 119 (253)
-...|+|+|.||||||||+++|.+... +.+++.||.......+.+.++ ..+.+||+||..+- ..+.. ..+
T Consensus 157 ~~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~--~~~~i~D~PGli~ga~~~~gLg~~flrhi 234 (335)
T PRK12299 157 LLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDY--KSFVIADIPGLIEGASEGAGLGHRFLKHI 234 (335)
T ss_pred ccCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCC--cEEEEEeCCCccCCCCccccHHHHHHHHh
Confidence 345789999999999999999998653 577888888888888877443 35789999997542 12322 345
Q ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHHhcC--CCCCEEEEEecCCCCCcc-ccHHHHHHHHHhcCCCcEEEeccCCC
Q psy549 120 STADAFVLVYAVDDASTWDVVKDLREQIVNKRG--LMVPIVVVGNKCELEFKD-VRREIAETIALYDWQCGFVECSAKEN 196 (253)
Q Consensus 120 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~ 196 (253)
+.++++|+|+|+++..+++.+..|..++..+.. .++|+++|+||+|+.... ......+.+.. ....+++++||+++
T Consensus 235 e~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~-~~~~~i~~iSAktg 313 (335)
T PRK12299 235 ERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELA-ALGGPVFLISAVTG 313 (335)
T ss_pred hhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHH-hcCCCEEEEEcCCC
Confidence 679999999999988788888889888877543 468999999999987653 23333333333 34578999999999
Q ss_pred CCHHHHHHHHHHHHHH
Q psy549 197 YNIVQVFKELLAQAKV 212 (253)
Q Consensus 197 ~~i~~l~~~l~~~~~~ 212 (253)
.|+++++++|.+.+..
T Consensus 314 ~GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 314 EGLDELLRALWELLEE 329 (335)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999988754
No 128
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.91 E-value=1.8e-23 Score=160.96 Aligned_cols=160 Identities=20% Similarity=0.305 Sum_probs=124.3
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEE
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAF 125 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 125 (253)
....++|+|+|+.|||||||++++..+.... ..+|. .+....+.+ + .+.+.+||.+|+..++..|..++.++|++
T Consensus 11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~-g~~~~~i~~-~--~~~~~~~d~gG~~~~~~~w~~y~~~~~~i 85 (175)
T PF00025_consen 11 KKKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTI-GFNIEEIKY-K--GYSLTIWDLGGQESFRPLWKSYFQNADGI 85 (175)
T ss_dssp TTSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEES-SEEEEEEEE-T--TEEEEEEEESSSGGGGGGGGGGHTTESEE
T ss_pred cCcEEEEEEECCCccchHHHHHHhhhccccc-cCccc-ccccceeee-C--cEEEEEEeccccccccccceeecccccee
Confidence 3678999999999999999999999876533 22332 233344445 3 36789999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHh-cCCCCCEEEEEecCCCCCccccHHHHHHHHHh----cCCCcEEEeccCCCCCHH
Q psy549 126 VLVYAVDDASTWDVVKDLREQIVNK-RGLMVPIVVVGNKCELEFKDVRREIAETIALY----DWQCGFVECSAKENYNIV 200 (253)
Q Consensus 126 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~i~ 200 (253)
|+|+|.++.+.+......+..+... ...++|+++++||.|+.+.....++...+... ...+.++.||+.+|.|+.
T Consensus 86 IfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~ 165 (175)
T PF00025_consen 86 IFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGVD 165 (175)
T ss_dssp EEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTHH
T ss_pred EEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeeeccCCcCHH
Confidence 9999999998887766666665552 33569999999999998764445454444332 245568999999999999
Q ss_pred HHHHHHHHHH
Q psy549 201 QVFKELLAQA 210 (253)
Q Consensus 201 ~l~~~l~~~~ 210 (253)
+.|+||.+.+
T Consensus 166 e~l~WL~~~~ 175 (175)
T PF00025_consen 166 EGLEWLIEQI 175 (175)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhcC
Confidence 9999999865
No 129
>KOG0073|consensus
Probab=99.91 E-value=7.6e-23 Score=148.41 Aligned_cols=162 Identities=19% Similarity=0.252 Sum_probs=127.4
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEE
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAF 125 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 125 (253)
...+++|.|+|..|+||||++++|.+... +....+.-+..+.+.+ ..+.+++||++|+..+++.|..||+.+|++
T Consensus 13 kerE~riLiLGLdNsGKTti~~kl~~~~~--~~i~pt~gf~Iktl~~---~~~~L~iwDvGGq~~lr~~W~nYfestdgl 87 (185)
T KOG0073|consen 13 KEREVRILILGLDNSGKTTIVKKLLGEDT--DTISPTLGFQIKTLEY---KGYTLNIWDVGGQKTLRSYWKNYFESTDGL 87 (185)
T ss_pred hhheeEEEEEecCCCCchhHHHHhcCCCc--cccCCccceeeEEEEe---cceEEEEEEcCCcchhHHHHHHhhhccCeE
Confidence 34589999999999999999999998762 2223334455555555 347899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHH-hcCCCCCEEEEEecCCCCCccccHHHH-----HHHHHhcCCCcEEEeccCCCCCH
Q psy549 126 VLVYAVDDASTWDVVKDLREQIVN-KRGLMVPIVVVGNKCELEFKDVRREIA-----ETIALYDWQCGFVECSAKENYNI 199 (253)
Q Consensus 126 i~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~~i 199 (253)
|+|+|.+|+..++.....+..+.. .+-.+.|+++++||.|++..-..+++. +.+.+ ...++++.||+.+|.++
T Consensus 88 IwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~k-s~~~~l~~cs~~tge~l 166 (185)
T KOG0073|consen 88 IWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAK-SHHWRLVKCSAVTGEDL 166 (185)
T ss_pred EEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhcc-ccCceEEEEeccccccH
Confidence 999999999988886665554444 333568999999999998653333332 33333 56789999999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy549 200 VQVFKELLAQAKVQ 213 (253)
Q Consensus 200 ~~l~~~l~~~~~~~ 213 (253)
.+-++|++..+..+
T Consensus 167 ~~gidWL~~~l~~r 180 (185)
T KOG0073|consen 167 LEGIDWLCDDLMSR 180 (185)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988763
No 130
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.91 E-value=3.3e-23 Score=160.08 Aligned_cols=154 Identities=15% Similarity=0.241 Sum_probs=110.1
Q ss_pred eEEEECCCCCCHHHHHHHHHhCC-------CCCCccccce-------eeeee--eEEc--CCCcEEEEEEEeCCCCCCCh
Q psy549 51 RVVVMGGARVGKSSIISQFLYDR-------FISRYKETVE-------ELHRG--EYEL--PDGAQLTLDILDTSGAYQFP 112 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~~~-------~~~~~~~t~~-------~~~~~--~~~~--~~~~~~~~~l~D~~g~~~~~ 112 (253)
+|+++|++++|||||+++|++.. +...+..+.+ ..... .+.+ .++..+.+.||||||++++.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 79999999999999999999742 1112211110 11111 1111 14566889999999999999
Q ss_pred hhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHHhcCCC---cEE
Q psy549 113 AMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIALYDWQC---GFV 189 (253)
Q Consensus 113 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~~ 189 (253)
..+..+++.+|++|+|+|+++..++..+..|+... . .++|+++|+||+|+.+.. .....+.+++. .+. .++
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~-~---~~~~iiiv~NK~Dl~~~~-~~~~~~~~~~~-~~~~~~~~~ 155 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL-E---NNLEIIPVINKIDLPSAD-PERVKQQIEDV-LGLDPSEAI 155 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH-H---cCCCEEEEEECCCCCcCC-HHHHHHHHHHH-hCCCcccEE
Confidence 99999999999999999999877766666554332 1 468999999999986532 22233444442 222 489
Q ss_pred EeccCCCCCHHHHHHHHHHHH
Q psy549 190 ECSAKENYNIVQVFKELLAQA 210 (253)
Q Consensus 190 ~~Sa~~~~~i~~l~~~l~~~~ 210 (253)
++||++|.|++++|++|.+.+
T Consensus 156 ~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 156 LVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred EeeccCCCCHHHHHHHHHhhC
Confidence 999999999999999998764
No 131
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.91 E-value=1.5e-22 Score=152.31 Aligned_cols=157 Identities=25% Similarity=0.376 Sum_probs=123.6
Q ss_pred cceEEEECCCCCCHHHHHHHHHhCCCCCCccccc-eeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEE
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYDRFISRYKETV-EELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVL 127 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 127 (253)
.+||+++|.+|+|||||++++.+..+...+..++ .+.....+.. ++..+.+.+||+||+.++..++......++.++.
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 79 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEE-DGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLR 79 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEE-CCEEEEEEEEECCCcccchHHHHHHHhhhhEEEE
Confidence 3799999999999999999999988655444343 3555555666 6656789999999999999999888999999999
Q ss_pred EEECCCh-hhHHHHH-HHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHHH
Q psy549 128 VYAVDDA-STWDVVK-DLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIALYDWQCGFVECSAKENYNIVQVFKE 205 (253)
Q Consensus 128 v~d~~~~-~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 205 (253)
++|.... .++.... .|...+......+.|+++|+||+|+............+.. ....+++++||+++.|+.++|++
T Consensus 80 ~~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-~~~~~~~~~sa~~~~gv~~~~~~ 158 (161)
T TIGR00231 80 VFDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAKLKTHVAFLFAK-LNGEPIIPLSAETGKNIDSAFKI 158 (161)
T ss_pred EEEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcchhhHHHHHHHhh-ccCCceEEeecCCCCCHHHHHHH
Confidence 9999877 6666544 5665555544337899999999999776555555555555 55678999999999999999988
Q ss_pred HH
Q psy549 206 LL 207 (253)
Q Consensus 206 l~ 207 (253)
|-
T Consensus 159 l~ 160 (161)
T TIGR00231 159 VE 160 (161)
T ss_pred hh
Confidence 63
No 132
>PTZ00099 rab6; Provisional
Probab=99.91 E-value=8.5e-23 Score=157.07 Aligned_cols=140 Identities=28% Similarity=0.385 Sum_probs=119.0
Q ss_pred CCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHh
Q psy549 72 DRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNK 150 (253)
Q Consensus 72 ~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~ 150 (253)
+.|...+.+|.+ ++....+.+ ++..+.+.||||+|++++..++..+++++|++|+|||++++.+|+.+..|+..+...
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~-~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~ 81 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYL-DEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNE 81 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEE-CCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 346667777776 666667777 778899999999999999999999999999999999999999999999999988776
Q ss_pred cCCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHHHHHHHHHHh
Q psy549 151 RGLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQAKVQ 213 (253)
Q Consensus 151 ~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 213 (253)
....+|+++|+||+|+... .+..+.+..++. ..+..+++|||++|.||+++|++|++.+.+.
T Consensus 82 ~~~~~piilVgNK~DL~~~~~v~~~e~~~~~~-~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~ 144 (176)
T PTZ00099 82 RGKDVIIALVGNKTDLGDLRKVTYEEGMQKAQ-EYNTMFHETSAKAGHNIKVLFKKIAAKLPNL 144 (176)
T ss_pred cCCCCeEEEEEECcccccccCCCHHHHHHHHH-HcCCEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 5567899999999999653 556666667766 5577899999999999999999999988553
No 133
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.90 E-value=1.2e-22 Score=156.06 Aligned_cols=157 Identities=20% Similarity=0.294 Sum_probs=115.7
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEE
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFV 126 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 126 (253)
...++|+|+|++|||||||++++.+..+.. +.++.. .....+.+ ++ ..+.+||++|+..+...+..+++.+|+++
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~t~g-~~~~~i~~-~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 86 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDISH-ITPTQG-FNIKTVQS-DG--FKLNVWDIGGQRAIRPYWRNYFENTDCLI 86 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCcc-cCCCCC-cceEEEEE-CC--EEEEEEECCCCHHHHHHHHHHhcCCCEEE
Confidence 347999999999999999999999876532 222222 22234444 33 57899999999988888888999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHh-cCCCCCEEEEEecCCCCCccccHHHHHHHHHhc---CCCcEEEeccCCCCCHHHH
Q psy549 127 LVYAVDDASTWDVVKDLREQIVNK-RGLMVPIVVVGNKCELEFKDVRREIAETIALYD---WQCGFVECSAKENYNIVQV 202 (253)
Q Consensus 127 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~l 202 (253)
+|+|+.+..++.....|+..+... ...++|+++++||+|+.......+..+.+.... ...+++++||++|.|++++
T Consensus 87 ~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~ 166 (173)
T cd04155 87 YVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQACSAKTGEGLQEG 166 (173)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCCeEEEEEeECCCCCCHHHH
Confidence 999999988888777776655542 234689999999999866432333333332111 1125789999999999999
Q ss_pred HHHHHH
Q psy549 203 FKELLA 208 (253)
Q Consensus 203 ~~~l~~ 208 (253)
|+||++
T Consensus 167 ~~~l~~ 172 (173)
T cd04155 167 MNWVCK 172 (173)
T ss_pred HHHHhc
Confidence 999975
No 134
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.90 E-value=9.5e-23 Score=160.91 Aligned_cols=157 Identities=17% Similarity=0.151 Sum_probs=114.0
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCCC-CCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCC-h-hhH------HH
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDRF-ISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQF-P-AMR------EL 117 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-~-~~~------~~ 117 (253)
.+.++|+|+|++|||||||++++++..+ ......++.+.....+.+.+. ..+.+|||||..+. . ... ..
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 116 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG--REVLLTDTVGFIRDLPHQLVEAFRSTLE 116 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC--ceEEEeCCCccccCCCHHHHHHHHHHHH
Confidence 3458999999999999999999999774 333334444445555555332 26889999997432 1 111 11
Q ss_pred hcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHHhcCCCcEEEeccCCCC
Q psy549 118 SISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIALYDWQCGFVECSAKENY 197 (253)
Q Consensus 118 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 197 (253)
.+..+|++++|+|++++.++.....|...+......++|+++|+||+|+....... .... ....+++++||+++.
T Consensus 117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~----~~~~-~~~~~~~~~Sa~~~~ 191 (204)
T cd01878 117 EVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE----ERLE-AGRPDAVFISAKTGE 191 (204)
T ss_pred HHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH----HHhh-cCCCceEEEEcCCCC
Confidence 36689999999999998888777777776665544568999999999986642221 2222 456789999999999
Q ss_pred CHHHHHHHHHHHH
Q psy549 198 NIVQVFKELLAQA 210 (253)
Q Consensus 198 ~i~~l~~~l~~~~ 210 (253)
|+.+++++|.+.+
T Consensus 192 gi~~l~~~L~~~~ 204 (204)
T cd01878 192 GLDELLEAIEELL 204 (204)
T ss_pred CHHHHHHHHHhhC
Confidence 9999999988653
No 135
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.90 E-value=3.8e-22 Score=167.23 Aligned_cols=160 Identities=17% Similarity=0.121 Sum_probs=123.9
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCCC-CCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCCh----hhHHHh---c
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDRF-ISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFP----AMRELS---I 119 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~----~~~~~~---~ 119 (253)
-...|+|+|.||||||||+++|.+... +..++.|+.......+.+.+ ...+.+||+||..+.. .+...+ +
T Consensus 156 ~~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~--~~~~~i~D~PGli~~a~~~~gLg~~flrhi 233 (329)
T TIGR02729 156 LLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD--GRSFVIADIPGLIEGASEGAGLGHRFLKHI 233 (329)
T ss_pred ccccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC--ceEEEEEeCCCcccCCcccccHHHHHHHHH
Confidence 446889999999999999999998663 56777888877777777733 2467999999975422 233333 4
Q ss_pred ccCCEEEEEEECCCh---hhHHHHHHHHHHHHHhcC--CCCCEEEEEecCCCCCccccHHHHHHHHHhcCCCcEEEeccC
Q psy549 120 STADAFVLVYAVDDA---STWDVVKDLREQIVNKRG--LMVPIVVVGNKCELEFKDVRREIAETIALYDWQCGFVECSAK 194 (253)
Q Consensus 120 ~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 194 (253)
+.++++++|+|+++. .+++.+..|.+++..+.. ..+|+++|+||+|+.......+..+.+.. ..+.+++++||+
T Consensus 234 erad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~-~~~~~vi~iSAk 312 (329)
T TIGR02729 234 ERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKK-ALGKPVFPISAL 312 (329)
T ss_pred HhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHH-HcCCcEEEEEcc
Confidence 579999999999976 677778888877766432 46899999999999776444555566665 345789999999
Q ss_pred CCCCHHHHHHHHHHHH
Q psy549 195 ENYNIVQVFKELLAQA 210 (253)
Q Consensus 195 ~~~~i~~l~~~l~~~~ 210 (253)
++.|+++++++|.+.+
T Consensus 313 tg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 313 TGEGLDELLYALAELL 328 (329)
T ss_pred CCcCHHHHHHHHHHHh
Confidence 9999999999998765
No 136
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.90 E-value=5.1e-22 Score=158.35 Aligned_cols=167 Identities=25% Similarity=0.349 Sum_probs=133.1
Q ss_pred cceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEE
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLV 128 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 128 (253)
.+||+++|++|||||||+++|.++.+...+..|....+.......++..+.+.+|||+|+++|+.++..++.+++++++|
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~ 84 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV 84 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 38999999999999999999999999888888877666655555455578899999999999999999999999999999
Q ss_pred EECCC-hhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccc-------------cHHHHHHHHHh--cCCCcEEEec
Q psy549 129 YAVDD-ASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDV-------------RREIAETIALY--DWQCGFVECS 192 (253)
Q Consensus 129 ~d~~~-~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-------------~~~~~~~~~~~--~~~~~~~~~S 192 (253)
||..+ ..+++....|...+........|+++|+||+|+..... ........... .....++++|
T Consensus 85 ~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 164 (219)
T COG1100 85 YDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETS 164 (219)
T ss_pred EecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEee
Confidence 99999 45555577788887776656799999999999987621 11111111111 1233489999
Q ss_pred cC--CCCCHHHHHHHHHHHHHHhcc
Q psy549 193 AK--ENYNIVQVFKELLAQAKVQYN 215 (253)
Q Consensus 193 a~--~~~~i~~l~~~l~~~~~~~~~ 215 (253)
++ .+.++.++|..+...+.....
T Consensus 165 ~~~~~~~~v~~~~~~~~~~~~~~~~ 189 (219)
T COG1100 165 AKSLTGPNVNELFKELLRKLLEEIE 189 (219)
T ss_pred cccCCCcCHHHHHHHHHHHHHHhhh
Confidence 99 999999999999998866533
No 137
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.89 E-value=4.5e-22 Score=151.25 Aligned_cols=151 Identities=21% Similarity=0.157 Sum_probs=103.6
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCC---CCCCc-cccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEE
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDR---FISRY-KETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAF 125 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~---~~~~~-~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 125 (253)
+.|+++|++|||||||+++|.+.. +...+ ..++.+.....+.+.++ ..+.+|||||+++|......+++++|++
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~ad~i 78 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSG--KRLGFIDVPGHEKFIKNMLAGAGGIDLV 78 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCC--cEEEEEECCChHHHHHHHHhhhhcCCEE
Confidence 368999999999999999999643 32222 23334444445555223 4789999999998877777788999999
Q ss_pred EEEEECCC---hhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCcc----ccHHHHHHHHHh-cCCCcEEEeccCCCC
Q psy549 126 VLVYAVDD---ASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKD----VRREIAETIALY-DWQCGFVECSAKENY 197 (253)
Q Consensus 126 i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~----~~~~~~~~~~~~-~~~~~~~~~Sa~~~~ 197 (253)
++|+|+++ ..++..+. .+... ...|+++|+||+|+.+.. ...+..+.+... ....+++++|++++.
T Consensus 79 i~V~d~~~~~~~~~~~~~~----~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 152 (164)
T cd04171 79 LLVVAADEGIMPQTREHLE----ILELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGE 152 (164)
T ss_pred EEEEECCCCccHhHHHHHH----HHHHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCc
Confidence 99999987 33332221 12111 124999999999987642 112223333321 146789999999999
Q ss_pred CHHHHHHHHHH
Q psy549 198 NIVQVFKELLA 208 (253)
Q Consensus 198 ~i~~l~~~l~~ 208 (253)
|++++++.+.+
T Consensus 153 ~v~~l~~~l~~ 163 (164)
T cd04171 153 GIEELKEYLDE 163 (164)
T ss_pred CHHHHHHHHhh
Confidence 99999998754
No 138
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.89 E-value=9.1e-23 Score=151.76 Aligned_cols=135 Identities=21% Similarity=0.284 Sum_probs=97.8
Q ss_pred eEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCC-----CChhhHHHhcccCCEE
Q psy549 51 RVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAY-----QFPAMRELSISTADAF 125 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~-----~~~~~~~~~~~~~d~~ 125 (253)
||+++|++|||||||+++|.+..+. +..|. .+.+ .-.+|||||.. .+..+.. .++++|++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~------~~~~------~~~~iDt~G~~~~~~~~~~~~~~-~~~~ad~v 66 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQ------AVEY------NDGAIDTPGEYVENRRLYSALIV-TAADADVI 66 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--cccce------eEEE------cCeeecCchhhhhhHHHHHHHHH-HhhcCCEE
Confidence 8999999999999999999987652 11221 1222 11689999973 2333333 47899999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHHH
Q psy549 126 VLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIALYDWQCGFVECSAKENYNIVQVFKE 205 (253)
Q Consensus 126 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 205 (253)
++|||++++.++.. ..|.... ..|+++|+||+|+.+.....+..+.+.+.....+++++||++|.|++++|++
T Consensus 67 ilv~d~~~~~s~~~-~~~~~~~------~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 139 (142)
T TIGR02528 67 ALVQSATDPESRFP-PGFASIF------VKPVIGLVTKIDLAEADVDIERAKELLETAGAEPIFEISSVDEQGLEALVDY 139 (142)
T ss_pred EEEecCCCCCcCCC-hhHHHhc------cCCeEEEEEeeccCCcccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHH
Confidence 99999999988755 3343321 2499999999999765445555556555344458999999999999999998
Q ss_pred HH
Q psy549 206 LL 207 (253)
Q Consensus 206 l~ 207 (253)
++
T Consensus 140 l~ 141 (142)
T TIGR02528 140 LN 141 (142)
T ss_pred Hh
Confidence 74
No 139
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.89 E-value=7.3e-22 Score=162.19 Aligned_cols=153 Identities=20% Similarity=0.190 Sum_probs=112.2
Q ss_pred eEEEECCCCCCHHHHHHHHHhCCC--CCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCCh-h-------hHHHhcc
Q psy549 51 RVVVMGGARVGKSSIISQFLYDRF--ISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFP-A-------MRELSIS 120 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-~-------~~~~~~~ 120 (253)
+|+++|.+|||||||+|+|++..+ ++..+.|+++........ ++ ..+.||||||..... . ....++.
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~-~~--~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~ 78 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTT-GA--SQIIFIDTPGFHEKKHSLNRLMMKEARSAIG 78 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEc-CC--cEEEEEECcCCCCCcchHHHHHHHHHHHHHh
Confidence 689999999999999999999875 466777888766655554 33 357899999976532 1 1234578
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHHhcCCCcEEEeccCCCCCHH
Q psy549 121 TADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIALYDWQCGFVECSAKENYNIV 200 (253)
Q Consensus 121 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 200 (253)
++|++++|+|+++..++. ..++..+.. .+.|+++|+||+|+............+.......+++++||++|.|++
T Consensus 79 ~aDvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gi~ 153 (270)
T TIGR00436 79 GVDLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFKDIVPISALTGDNTS 153 (270)
T ss_pred hCCEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCCceEEEecCCCCCHH
Confidence 999999999999876654 333333333 468999999999987543333334444442333479999999999999
Q ss_pred HHHHHHHHHHH
Q psy549 201 QVFKELLAQAK 211 (253)
Q Consensus 201 ~l~~~l~~~~~ 211 (253)
++++++.+.+.
T Consensus 154 ~L~~~l~~~l~ 164 (270)
T TIGR00436 154 FLAAFIEVHLP 164 (270)
T ss_pred HHHHHHHHhCC
Confidence 99999988763
No 140
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.89 E-value=9.2e-22 Score=166.28 Aligned_cols=154 Identities=18% Similarity=0.189 Sum_probs=115.7
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCCC-CCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCC--ChhhHH------Hh
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDRF-ISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQ--FPAMRE------LS 118 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--~~~~~~------~~ 118 (253)
..++|+|+|.+|+|||||+|+|++... +.+...++.+.....+.++++. .+.||||+|..+ ...+.. ..
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~--~i~l~DT~G~~~~l~~~lie~f~~tle~ 265 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGG--EVLLTDTVGFIRDLPHELVAAFRATLEE 265 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCc--eEEEEecCcccccCCHHHHHHHHHHHHH
Confidence 458999999999999999999999764 4566677788888888885553 678999999732 122212 24
Q ss_pred cccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHHhcCCCcEEEeccCCCCC
Q psy549 119 ISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIALYDWQCGFVECSAKENYN 198 (253)
Q Consensus 119 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 198 (253)
+.++|++++|+|++++.++..+..|...+......++|+++|+||+|+.... . ...+. ....+++++||++|.|
T Consensus 266 ~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~---~-v~~~~--~~~~~~i~iSAktg~G 339 (351)
T TIGR03156 266 VREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEP---R-IERLE--EGYPEAVFVSAKTGEG 339 (351)
T ss_pred HHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChH---h-HHHHH--hCCCCEEEEEccCCCC
Confidence 7789999999999998887776666655555444578999999999986431 1 11121 1234689999999999
Q ss_pred HHHHHHHHHHH
Q psy549 199 IVQVFKELLAQ 209 (253)
Q Consensus 199 i~~l~~~l~~~ 209 (253)
+++++++|.+.
T Consensus 340 I~eL~~~I~~~ 350 (351)
T TIGR03156 340 LDLLLEAIAER 350 (351)
T ss_pred HHHHHHHHHhh
Confidence 99999998764
No 141
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.88 E-value=2.3e-21 Score=148.08 Aligned_cols=157 Identities=21% Similarity=0.214 Sum_probs=108.3
Q ss_pred eEEEECCCCCCHHHHHHHHHhCCCCCCcc-ccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEEE
Q psy549 51 RVVVMGGARVGKSSIISQFLYDRFISRYK-ETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLVY 129 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 129 (253)
.|+|+|++|+|||||+++|....+..... .++.......+....+....+.+|||||++.|..++...+..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 58999999999999999999887644322 23333333344441123467899999999999988888899999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccc--cHHHHHHHHH-----hcCCCcEEEeccCCCCCHHHH
Q psy549 130 AVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDV--RREIAETIAL-----YDWQCGFVECSAKENYNIVQV 202 (253)
Q Consensus 130 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~l 202 (253)
|+++......... +..+.. .++|+++|+||+|+..... .......+.. .....+++++|+++|.|+.++
T Consensus 82 d~~~~~~~~~~~~-~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 157 (168)
T cd01887 82 AADDGVMPQTIEA-IKLAKA---ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDL 157 (168)
T ss_pred ECCCCccHHHHHH-HHHHHH---cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHH
Confidence 9988532222111 122222 5689999999999875321 1111111111 122468999999999999999
Q ss_pred HHHHHHHHH
Q psy549 203 FKELLAQAK 211 (253)
Q Consensus 203 ~~~l~~~~~ 211 (253)
+++|.+...
T Consensus 158 ~~~l~~~~~ 166 (168)
T cd01887 158 LEAILLLAE 166 (168)
T ss_pred HHHHHHhhh
Confidence 999988653
No 142
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.88 E-value=3.1e-21 Score=143.80 Aligned_cols=152 Identities=35% Similarity=0.561 Sum_probs=119.3
Q ss_pred EECCCCCCHHHHHHHHHhCCC-CCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEEEECC
Q psy549 54 VMGGARVGKSSIISQFLYDRF-ISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLVYAVD 132 (253)
Q Consensus 54 iiG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~ 132 (253)
|+|++|+|||||++++.+... ......+..+.....+.. ......+.+||+||...+.......++.+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEV-DGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEE-CCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999999876 444444545555556655 455678999999999988888888899999999999999
Q ss_pred ChhhHHHHHHHH-HHHHHhcCCCCCEEEEEecCCCCCccccHHH--HHHHHHhcCCCcEEEeccCCCCCHHHHHHHHH
Q psy549 133 DASTWDVVKDLR-EQIVNKRGLMVPIVVVGNKCELEFKDVRREI--AETIALYDWQCGFVECSAKENYNIVQVFKELL 207 (253)
Q Consensus 133 ~~~s~~~~~~~~-~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~--~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 207 (253)
++.++.....|+ .........++|+++|+||+|+......... ...... ....+++++|+.++.|+.+++++|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAK-ELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHh-hcCCcEEEEecCCCCChHHHHHHHh
Confidence 999888877762 3333345577999999999998765333332 233333 6678999999999999999999875
No 143
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.88 E-value=4.2e-22 Score=148.25 Aligned_cols=147 Identities=20% Similarity=0.277 Sum_probs=106.4
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCCC-CCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhH------HHh--cc
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDRF-ISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMR------ELS--IS 120 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~------~~~--~~ 120 (253)
++|+++|.||||||||+|+|++.+. +.+++.+|.+...+.+.+ ++ ..+.++|+||...+.... ..+ ..
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~-~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~ 77 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKL-GD--QQVELVDLPGIYSLSSKSEEERVARDYLLSE 77 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEE-TT--EEEEEEE----SSSSSSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEe-cC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhc
Confidence 5899999999999999999999774 678889999988889988 44 467899999965432211 123 35
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHHhcCCCcEEEeccCCCCCHH
Q psy549 121 TADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIALYDWQCGFVECSAKENYNIV 200 (253)
Q Consensus 121 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 200 (253)
..|++++|.|+++.+ .-..+...+.. .++|+++|+||+|.....-..-..+.+.+ ..++|++++||+++.|++
T Consensus 78 ~~D~ii~VvDa~~l~---r~l~l~~ql~e---~g~P~vvvlN~~D~a~~~g~~id~~~Ls~-~Lg~pvi~~sa~~~~g~~ 150 (156)
T PF02421_consen 78 KPDLIIVVVDATNLE---RNLYLTLQLLE---LGIPVVVVLNKMDEAERKGIEIDAEKLSE-RLGVPVIPVSARTGEGID 150 (156)
T ss_dssp SSSEEEEEEEGGGHH---HHHHHHHHHHH---TTSSEEEEEETHHHHHHTTEEE-HHHHHH-HHTS-EEEEBTTTTBTHH
T ss_pred CCCEEEEECCCCCHH---HHHHHHHHHHH---cCCCEEEEEeCHHHHHHcCCEECHHHHHH-HhCCCEEEEEeCCCcCHH
Confidence 799999999998743 21223333333 56999999999998766333334566666 568999999999999999
Q ss_pred HHHHHH
Q psy549 201 QVFKEL 206 (253)
Q Consensus 201 ~l~~~l 206 (253)
++++.|
T Consensus 151 ~L~~~I 156 (156)
T PF02421_consen 151 ELKDAI 156 (156)
T ss_dssp HHHHHH
T ss_pred HHHhhC
Confidence 999875
No 144
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.88 E-value=3.5e-21 Score=145.51 Aligned_cols=147 Identities=20% Similarity=0.254 Sum_probs=109.8
Q ss_pred EECCCCCCHHHHHHHHHhCCC-CCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChh------hHHHhcc--cCCE
Q psy549 54 VMGGARVGKSSIISQFLYDRF-ISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPA------MRELSIS--TADA 124 (253)
Q Consensus 54 iiG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~------~~~~~~~--~~d~ 124 (253)
|+|.+|+|||||++++.+... ...++.++.+.....+.+ ++ ..+.+|||||+..+.. ++..++. .+|+
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~ 77 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKL-GG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDL 77 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEee-CC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcE
Confidence 589999999999999998763 455566677777777777 54 4789999999987654 3455554 8999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHH
Q psy549 125 FVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIALYDWQCGFVECSAKENYNIVQVFK 204 (253)
Q Consensus 125 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 204 (253)
+++|+|+.+.... ..|...+.. .++|+++|+||+|+.+........+.+.. ..+.+++++|+.++.|+.++++
T Consensus 78 vi~v~d~~~~~~~---~~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~-~~~~~~~~iSa~~~~~~~~l~~ 150 (158)
T cd01879 78 IVNVVDATNLERN---LYLTLQLLE---LGLPVVVALNMIDEAEKRGIKIDLDKLSE-LLGVPVVPTSARKGEGIDELKD 150 (158)
T ss_pred EEEEeeCCcchhH---HHHHHHHHH---cCCCEEEEEehhhhcccccchhhHHHHHH-hhCCCeEEEEccCCCCHHHHHH
Confidence 9999999876432 233333332 46899999999999765332333445555 4567899999999999999999
Q ss_pred HHHHHH
Q psy549 205 ELLAQA 210 (253)
Q Consensus 205 ~l~~~~ 210 (253)
++.+.+
T Consensus 151 ~l~~~~ 156 (158)
T cd01879 151 AIAELA 156 (158)
T ss_pred HHHHHh
Confidence 988764
No 145
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.88 E-value=3.9e-21 Score=166.95 Aligned_cols=154 Identities=25% Similarity=0.350 Sum_probs=120.9
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCC--CCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhH--------
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDR--FISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMR-------- 115 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~-------- 115 (253)
....++|+++|++|||||||+|+|++.. ++..++.|+.+.....+.+ ++ +.+.+|||||..++....
T Consensus 200 ~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~-~g--~~v~l~DTaG~~~~~~~ie~~gi~~~ 276 (442)
T TIGR00450 200 LDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFEL-NG--ILIKLLDTAGIREHADFVERLGIEKS 276 (442)
T ss_pred hhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEE-CC--EEEEEeeCCCcccchhHHHHHHHHHH
Confidence 3566899999999999999999999865 5677888888888888888 65 456899999987665432
Q ss_pred HHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHHhcCCCcEEEeccCC
Q psy549 116 ELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIALYDWQCGFVECSAKE 195 (253)
Q Consensus 116 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 195 (253)
..+++.+|++++|+|++++.++... |+..+.. .++|+++|+||+|+.... .+.+.. ..+.+++++|+++
T Consensus 277 ~~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~---~~~piIlV~NK~Dl~~~~-----~~~~~~-~~~~~~~~vSak~ 345 (442)
T TIGR00450 277 FKAIKQADLVIYVLDASQPLTKDDF--LIIDLNK---SKKPFILVLNKIDLKINS-----LEFFVS-SKVLNSSNLSAKQ 345 (442)
T ss_pred HHHHhhCCEEEEEEECCCCCChhHH--HHHHHhh---CCCCEEEEEECccCCCcc-----hhhhhh-hcCCceEEEEEec
Confidence 2467899999999999998877654 6554432 468999999999986531 123333 4567889999998
Q ss_pred CCCHHHHHHHHHHHHHHhc
Q psy549 196 NYNIVQVFKELLAQAKVQY 214 (253)
Q Consensus 196 ~~~i~~l~~~l~~~~~~~~ 214 (253)
.||.++|+.+.+.+....
T Consensus 346 -~gI~~~~~~L~~~i~~~~ 363 (442)
T TIGR00450 346 -LKIKALVDLLTQKINAFY 363 (442)
T ss_pred -CCHHHHHHHHHHHHHHHh
Confidence 699999999999887653
No 146
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.88 E-value=2.2e-21 Score=170.85 Aligned_cols=158 Identities=23% Similarity=0.263 Sum_probs=118.4
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCCC--CCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCC----------CChhhH
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDRF--ISRYKETVEELHRGEYELPDGAQLTLDILDTSGAY----------QFPAMR 115 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~----------~~~~~~ 115 (253)
..++|+|+|.+|||||||+|+|++... +...+.++.+.....+.+ ++. .+.+|||||.. .|..+.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~-~~~--~~~l~DTaG~~~~~~~~~~~e~~~~~~ 286 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIEL-GGK--TWRFVDTAGLRRRVKQASGHEYYASLR 286 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEE-CCE--EEEEEECCCccccccccchHHHHHHHH
Confidence 468999999999999999999999764 566778888888777877 654 45799999953 233332
Q ss_pred -HHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCcccc----HHHHHHHHHhcCCCcEEE
Q psy549 116 -ELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVR----REIAETIALYDWQCGFVE 190 (253)
Q Consensus 116 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~----~~~~~~~~~~~~~~~~~~ 190 (253)
..+++.+|++++|+|++++.++..+. ++..+.. .++|+++|+||+|+...... .+..+.+.. ....++++
T Consensus 287 ~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~---~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~-~~~~~~~~ 361 (472)
T PRK03003 287 THAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE---AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQ-VPWAPRVN 361 (472)
T ss_pred HHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChhHHHHHHHHHHHhccc-CCCCCEEE
Confidence 23578999999999999988877753 3443333 56899999999999753211 122222332 34478999
Q ss_pred eccCCCCCHHHHHHHHHHHHHHh
Q psy549 191 CSAKENYNIVQVFKELLAQAKVQ 213 (253)
Q Consensus 191 ~Sa~~~~~i~~l~~~l~~~~~~~ 213 (253)
+||++|.|++++|+.+.+.+...
T Consensus 362 ~SAk~g~gv~~lf~~i~~~~~~~ 384 (472)
T PRK03003 362 ISAKTGRAVDKLVPALETALESW 384 (472)
T ss_pred EECCCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999877544
No 147
>PRK15494 era GTPase Era; Provisional
Probab=99.88 E-value=8.1e-21 Score=160.29 Aligned_cols=157 Identities=18% Similarity=0.280 Sum_probs=111.8
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCCCC--CCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCC-ChhhHH-------
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDRFI--SRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQ-FPAMRE------- 116 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-~~~~~~------- 116 (253)
...++|+++|.+|||||||+|+|++..+. +....|+.+...+.+.. ++ ..+.||||||..+ +..+..
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~-~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~ 126 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITL-KD--TQVILYDTPGIFEPKGSLEKAMVRCAW 126 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEe-CC--eEEEEEECCCcCCCcccHHHHHHHHHH
Confidence 45679999999999999999999998763 44556777777777777 44 3679999999854 332222
Q ss_pred HhcccCCEEEEEEECCChhhHHHHHH-HHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHHhcCCCcEEEeccCC
Q psy549 117 LSISTADAFVLVYAVDDASTWDVVKD-LREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIALYDWQCGFVECSAKE 195 (253)
Q Consensus 117 ~~~~~~d~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 195 (253)
..+.++|++++|+|..+ ++..... |+..+.. .+.|+++|+||+|+... ...+..+.+........++++||++
T Consensus 127 ~~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~---~~~p~IlViNKiDl~~~-~~~~~~~~l~~~~~~~~i~~iSAkt 200 (339)
T PRK15494 127 SSLHSADLVLLIIDSLK--SFDDITHNILDKLRS---LNIVPIFLLNKIDIESK-YLNDIKAFLTENHPDSLLFPISALS 200 (339)
T ss_pred HHhhhCCEEEEEEECCC--CCCHHHHHHHHHHHh---cCCCEEEEEEhhcCccc-cHHHHHHHHHhcCCCcEEEEEeccC
Confidence 24678999999999765 3444433 4443333 34678899999998653 2233333333322346799999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q psy549 196 NYNIVQVFKELLAQAKV 212 (253)
Q Consensus 196 ~~~i~~l~~~l~~~~~~ 212 (253)
|.|++++|++|.+.+..
T Consensus 201 g~gv~eL~~~L~~~l~~ 217 (339)
T PRK15494 201 GKNIDGLLEYITSKAKI 217 (339)
T ss_pred ccCHHHHHHHHHHhCCC
Confidence 99999999999887744
No 148
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.87 E-value=3.1e-21 Score=148.39 Aligned_cols=153 Identities=22% Similarity=0.267 Sum_probs=110.9
Q ss_pred EECCCCCCHHHHHHHHHhCCC-CCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCC----hhh---HHHhcccCCEE
Q psy549 54 VMGGARVGKSSIISQFLYDRF-ISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQF----PAM---RELSISTADAF 125 (253)
Q Consensus 54 iiG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~----~~~---~~~~~~~~d~~ 125 (253)
|+|++|||||||+++|.+... ...+..++.......+.+.++ ..+.+||+||..+. ..+ ....++.+|++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i 78 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDG--ARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAI 78 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCC--CeEEEEeccccchhhhcCCCccHHHHHHHhccCEE
Confidence 589999999999999999874 455566666666666666224 46799999996431 122 23357789999
Q ss_pred EEEEECCCh------hhHHHHHHHHHHHHHhcC-------CCCCEEEEEecCCCCCccccHHH-HHHHHHhcCCCcEEEe
Q psy549 126 VLVYAVDDA------STWDVVKDLREQIVNKRG-------LMVPIVVVGNKCELEFKDVRREI-AETIALYDWQCGFVEC 191 (253)
Q Consensus 126 i~v~d~~~~------~s~~~~~~~~~~~~~~~~-------~~~piilv~nK~Dl~~~~~~~~~-~~~~~~~~~~~~~~~~ 191 (253)
++|+|+.+. .++.....|...+..... .++|+++|+||+|+......... ...... .+..+++++
T Consensus 79 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~ 157 (176)
T cd01881 79 LHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELAL-EEGAEVVPI 157 (176)
T ss_pred EEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhc-CCCCCEEEE
Confidence 999999988 467777777766654332 36899999999998765322222 222222 567789999
Q ss_pred ccCCCCCHHHHHHHHHHH
Q psy549 192 SAKENYNIVQVFKELLAQ 209 (253)
Q Consensus 192 Sa~~~~~i~~l~~~l~~~ 209 (253)
|++++.|+++++++++..
T Consensus 158 Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 158 SAKTEEGLDELIRAIYEL 175 (176)
T ss_pred ehhhhcCHHHHHHHHHhh
Confidence 999999999999998764
No 149
>KOG0070|consensus
Probab=99.87 E-value=1.5e-21 Score=145.34 Aligned_cols=162 Identities=15% Similarity=0.226 Sum_probs=129.9
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEE
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAF 125 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 125 (253)
...+.+|+++|..++||||++++|..+++... .+|. .+....+.+. .+.|++||..|+++++.+|..++++.+++
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTi-GfnVE~v~yk---n~~f~vWDvGGq~k~R~lW~~Y~~~t~~l 88 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTI-GFNVETVEYK---NISFTVWDVGGQEKLRPLWKHYFQNTQGL 88 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCcccC-CCcc-ccceeEEEEc---ceEEEEEecCCCcccccchhhhccCCcEE
Confidence 46789999999999999999999999888655 3443 3444444452 47899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEecCCCCCccccHHHHHHHHHh---cCCCcEEEeccCCCCCHHH
Q psy549 126 VLVYAVDDASTWDVVKDLREQIVNKRG-LMVPIVVVGNKCELEFKDVRREIAETIALY---DWQCGFVECSAKENYNIVQ 201 (253)
Q Consensus 126 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~~~i~~ 201 (253)
|||.|.+|++-+......+..+..... .+.|+++++||.|+++.-...++.+.+... .....+..|+|.+|.|+.|
T Consensus 89 IfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~e 168 (181)
T KOG0070|consen 89 IFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLYE 168 (181)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeeccccccccHHH
Confidence 999999999888776666655555333 468999999999999875555555555542 2345577899999999999
Q ss_pred HHHHHHHHHHH
Q psy549 202 VFKELLAQAKV 212 (253)
Q Consensus 202 l~~~l~~~~~~ 212 (253)
.++|+.+.+..
T Consensus 169 gl~wl~~~~~~ 179 (181)
T KOG0070|consen 169 GLDWLSNNLKK 179 (181)
T ss_pred HHHHHHHHHhc
Confidence 99999998854
No 150
>KOG3883|consensus
Probab=99.87 E-value=1.2e-20 Score=135.33 Aligned_cols=165 Identities=28% Similarity=0.351 Sum_probs=142.7
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCC--CCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCC-hhhHHHhcccCCE
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDR--FISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQF-PAMRELSISTADA 124 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-~~~~~~~~~~~d~ 124 (253)
...||+++|-.++|||++++.++-+. ....+.+|.++.+...+..++|..-.+.|+||.|...+ ..+-..++.-+|+
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa 87 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA 87 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence 45799999999999999999999655 35677788899999999987777778999999998887 5666778899999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHH
Q psy549 125 FVLVYAVDDASTWDVVKDLREQIVNKRG-LMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQV 202 (253)
Q Consensus 125 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 202 (253)
+++||+..+++||+.++.+...+....+ ..+||++++||+|+.+. ++....+..+++ ...+..+++++.+...+.+.
T Consensus 88 fVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~-rEkvkl~eVta~dR~sL~ep 166 (198)
T KOG3883|consen 88 FVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAK-REKVKLWEVTAMDRPSLYEP 166 (198)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHh-hhheeEEEEEeccchhhhhH
Confidence 9999999999999998877777777433 44999999999999766 788889999998 77889999999999999999
Q ss_pred HHHHHHHHHHh
Q psy549 203 FKELLAQAKVQ 213 (253)
Q Consensus 203 ~~~l~~~~~~~ 213 (253)
|..++..+..-
T Consensus 167 f~~l~~rl~~p 177 (198)
T KOG3883|consen 167 FTYLASRLHQP 177 (198)
T ss_pred HHHHHHhccCC
Confidence 99999888543
No 151
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.87 E-value=8.6e-21 Score=143.02 Aligned_cols=145 Identities=23% Similarity=0.255 Sum_probs=110.5
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCCC--CCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhh--------HHHhc
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDRF--ISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAM--------RELSI 119 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~~~~~ 119 (253)
++|+++|++|+|||||++++.+... ....+.++.+.....+.. ++ ..+.+|||||..++... ....+
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~ 78 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDI-GG--IPVRLIDTAGIRETEDEIEKIGIERAREAI 78 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEe-CC--EEEEEEECCCcCCCcchHHHHHHHHHHHHH
Confidence 6899999999999999999998764 344555655665556655 43 56899999998765432 22467
Q ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHHhcCCCcEEEeccCCCCCH
Q psy549 120 STADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIALYDWQCGFVECSAKENYNI 199 (253)
Q Consensus 120 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 199 (253)
..+|++++|+|++++.+......+.. ....|+++|+||+|+.+.... ... .+..+++++||+++.|+
T Consensus 79 ~~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~~~~~------~~~-~~~~~~~~~Sa~~~~~v 145 (157)
T cd04164 79 EEADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLPDSEL------LSL-LAGKPIIAISAKTGEGL 145 (157)
T ss_pred hhCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCCcccc------ccc-cCCCceEEEECCCCCCH
Confidence 78999999999998777666444333 356899999999998765332 222 56788999999999999
Q ss_pred HHHHHHHHHHH
Q psy549 200 VQVFKELLAQA 210 (253)
Q Consensus 200 ~~l~~~l~~~~ 210 (253)
.+++++|...+
T Consensus 146 ~~l~~~l~~~~ 156 (157)
T cd04164 146 DELKEALLELA 156 (157)
T ss_pred HHHHHHHHHhh
Confidence 99999988764
No 152
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.87 E-value=3.9e-21 Score=167.77 Aligned_cols=148 Identities=24% Similarity=0.255 Sum_probs=117.6
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCC--CCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhH--------HH
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDR--FISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMR--------EL 117 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~--------~~ 117 (253)
..++|+++|.+|+|||||+|+|++.. ++.+.+.++.+.....+.+ ++ ..+.+|||||..++.... ..
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~-~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~ 290 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINL-DG--IPLRLIDTAGIRETDDEVEKIGIERSRE 290 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEE-CC--eEEEEEeCCCCCCCccHHHHHHHHHHHH
Confidence 45899999999999999999999876 4677788888888888887 55 467899999987655432 23
Q ss_pred hcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHHhcCCCcEEEeccCCCC
Q psy549 118 SISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIALYDWQCGFVECSAKENY 197 (253)
Q Consensus 118 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 197 (253)
.+..+|++++|+|++++.++.....|.. ..++|+++|+||+|+....... . ....+++++|+++|.
T Consensus 291 ~~~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~~~~~-------~-~~~~~~i~iSAktg~ 356 (449)
T PRK05291 291 AIEEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGEIDLE-------E-ENGKPVIRISAKTGE 356 (449)
T ss_pred HHHhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhccccchhh-------h-ccCCceEEEEeeCCC
Confidence 5788999999999999887765443432 3568999999999986532211 2 455689999999999
Q ss_pred CHHHHHHHHHHHHHH
Q psy549 198 NIVQVFKELLAQAKV 212 (253)
Q Consensus 198 ~i~~l~~~l~~~~~~ 212 (253)
|+++++++|.+.+..
T Consensus 357 GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 357 GIDELREAIKELAFG 371 (449)
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999998854
No 153
>PRK04213 GTP-binding protein; Provisional
Probab=99.87 E-value=7.3e-22 Score=155.49 Aligned_cols=153 Identities=20% Similarity=0.157 Sum_probs=97.4
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCCCCCC-ccccceeeeeeeEEcCCCcEEEEEEEeCCC-----------CCCChhh
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDRFISR-YKETVEELHRGEYELPDGAQLTLDILDTSG-----------AYQFPAM 114 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g-----------~~~~~~~ 114 (253)
...++|+++|++|||||||+++|.+..+... .+.++. ....+.+ + .+.+||||| ++.+...
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~--~~~~~~~-~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 79 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTR--KPNHYDW-G----DFILTDLPGFGFMSGVPKEVQEKIKDE 79 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceee--CceEEee-c----ceEEEeCCccccccccCHHHHHHHHHH
Confidence 3468999999999999999999998776432 222222 2223333 2 578999999 3455555
Q ss_pred HHHhcc----cCCEEEEEEECCChhhHHHHHHHH---------HHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHH
Q psy549 115 RELSIS----TADAFVLVYAVDDASTWDVVKDLR---------EQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIAL 181 (253)
Q Consensus 115 ~~~~~~----~~d~~i~v~d~~~~~s~~~~~~~~---------~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~ 181 (253)
+..++. .++++++|+|..+...+ ...|. ..+......++|+++|+||+|+.+.. .+....+..
T Consensus 80 ~~~~~~~~~~~~~~vi~v~d~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~--~~~~~~~~~ 155 (201)
T PRK04213 80 IVRYIEDNADRILAAVLVVDGKSFIEI--IERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKNR--DEVLDEIAE 155 (201)
T ss_pred HHHHHHhhhhhheEEEEEEeCcccccc--ccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCcH--HHHHHHHHH
Confidence 555554 35677888877542211 01110 00111112468999999999986543 223334333
Q ss_pred hcC--------CCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy549 182 YDW--------QCGFVECSAKENYNIVQVFKELLAQAK 211 (253)
Q Consensus 182 ~~~--------~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 211 (253)
... ..+++++||++| |++++|++|++.+.
T Consensus 156 ~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~ 192 (201)
T PRK04213 156 RLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLH 192 (201)
T ss_pred HhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhc
Confidence 111 125899999999 99999999998764
No 154
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.87 E-value=6.5e-21 Score=149.28 Aligned_cols=148 Identities=16% Similarity=0.210 Sum_probs=100.5
Q ss_pred ceEEEECCCCCCHHHHHHHHHh--CCCCCCcc------------ccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhh
Q psy549 50 RRVVVMGGARVGKSSIISQFLY--DRFISRYK------------ETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAM 114 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~--~~~~~~~~------------~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~ 114 (253)
.+|+++|++++|||||+++|+. +.+...+. .+.. ........+ +...+.+.+|||||+++|...
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~-~~~~~~~~l~DtpG~~~~~~~ 81 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAV-TYKDTKINIVDTPGHADFGGE 81 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEE-EECCEEEEEEECCCcHHHHHH
Confidence 4899999999999999999997 44533321 0111 222233333 344578999999999999999
Q ss_pred HHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccc---cHHHHHHHHHh-----cCCC
Q psy549 115 RELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDV---RREIAETIALY-----DWQC 186 (253)
Q Consensus 115 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---~~~~~~~~~~~-----~~~~ 186 (253)
+..+++.+|++++|+|+++.. +.....++..+.. .++|+++|+||+|+..... ..+..+.+... ..++
T Consensus 82 ~~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (194)
T cd01891 82 VERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDF 157 (194)
T ss_pred HHHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCcc
Confidence 999999999999999998743 2222333333322 4689999999999865421 12222222211 2367
Q ss_pred cEEEeccCCCCCHHHH
Q psy549 187 GFVECSAKENYNIVQV 202 (253)
Q Consensus 187 ~~~~~Sa~~~~~i~~l 202 (253)
+++++||++|.|+.++
T Consensus 158 ~iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 158 PVLYASAKNGWASLNL 173 (194)
T ss_pred CEEEeehhcccccccc
Confidence 8999999999877443
No 155
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.86 E-value=2e-20 Score=159.93 Aligned_cols=163 Identities=15% Similarity=0.147 Sum_probs=122.9
Q ss_pred cceEEEECCCCCCHHHHHHHHHhCCC-CCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChh----hH---HHhcc
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYDRF-ISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPA----MR---ELSIS 120 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~----~~---~~~~~ 120 (253)
...|+|+|.||||||||+|+|++.+. ++.++.||.......+.+.+++ .+.|+|+||..+-.. +. ...++
T Consensus 159 iadValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~--~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ 236 (390)
T PRK12298 159 LADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDER--SFVVADIPGLIEGASEGAGLGIRFLKHLE 236 (390)
T ss_pred cccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCc--EEEEEeCCCccccccchhhHHHHHHHHHH
Confidence 34799999999999999999998664 6788899998888888884443 478999999764221 11 22477
Q ss_pred cCCEEEEEEECC---ChhhHHHHHHHHHHHHHhcC--CCCCEEEEEecCCCCCccccHHHHHHHHHh-cCCCcEEEeccC
Q psy549 121 TADAFVLVYAVD---DASTWDVVKDLREQIVNKRG--LMVPIVVVGNKCELEFKDVRREIAETIALY-DWQCGFVECSAK 194 (253)
Q Consensus 121 ~~d~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~ 194 (253)
.+|++++|+|++ +...+.....|...+..... ...|+++|+||+|+.......+..+.+... .+..+++++||+
T Consensus 237 radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~~~~~Vi~ISA~ 316 (390)
T PRK12298 237 RCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEALGWEGPVYLISAA 316 (390)
T ss_pred hCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHhCCCCCEEEEECC
Confidence 899999999988 45566667777777666432 358999999999987653333444445442 223478999999
Q ss_pred CCCCHHHHHHHHHHHHHHh
Q psy549 195 ENYNIVQVFKELLAQAKVQ 213 (253)
Q Consensus 195 ~~~~i~~l~~~l~~~~~~~ 213 (253)
++.|+++++++|.+.+.+.
T Consensus 317 tg~GIdeLl~~I~~~L~~~ 335 (390)
T PRK12298 317 SGLGVKELCWDLMTFIEEN 335 (390)
T ss_pred CCcCHHHHHHHHHHHhhhC
Confidence 9999999999999988654
No 156
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.86 E-value=1.3e-20 Score=142.05 Aligned_cols=147 Identities=20% Similarity=0.204 Sum_probs=105.6
Q ss_pred EEECCCCCCHHHHHHHHHhCC--CCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChh--------hHHHhcccC
Q psy549 53 VVMGGARVGKSSIISQFLYDR--FISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPA--------MRELSISTA 122 (253)
Q Consensus 53 ~iiG~~~~GKSsLi~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------~~~~~~~~~ 122 (253)
+++|.+|+|||||+++|.+.. +....++++.+........ ++ ..+.+|||||...+.. .....++.+
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 77 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEW-GG--REFILIDTGGIEPDDEGISKEIREQAELAIEEA 77 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEE-CC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhC
Confidence 479999999999999999875 3455566666666666666 33 5789999999988654 233467889
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHHhcCCCcEEEeccCCCCCHHHH
Q psy549 123 DAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIALYDWQCGFVECSAKENYNIVQV 202 (253)
Q Consensus 123 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 202 (253)
|++++|+|..+..+.... .+...+.. .+.|+++|+||+|+...... ...+.. ....+++++|++++.|++++
T Consensus 78 d~ii~v~d~~~~~~~~~~-~~~~~~~~---~~~piiiv~nK~D~~~~~~~---~~~~~~-~~~~~~~~~Sa~~~~gv~~l 149 (157)
T cd01894 78 DVILFVVDGREGLTPADE-EIAKYLRK---SKKPVILVVNKVDNIKEEDE---AAEFYS-LGFGEPIPISAEHGRGIGDL 149 (157)
T ss_pred CEEEEEEeccccCCccHH-HHHHHHHh---cCCCEEEEEECcccCChHHH---HHHHHh-cCCCCeEEEecccCCCHHHH
Confidence 999999999876544332 12222222 34899999999998764322 223332 22237899999999999999
Q ss_pred HHHHHHHH
Q psy549 203 FKELLAQA 210 (253)
Q Consensus 203 ~~~l~~~~ 210 (253)
|+++++.+
T Consensus 150 ~~~l~~~~ 157 (157)
T cd01894 150 LDAILELL 157 (157)
T ss_pred HHHHHhhC
Confidence 99998753
No 157
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.86 E-value=9.4e-21 Score=148.11 Aligned_cols=157 Identities=17% Similarity=0.106 Sum_probs=103.4
Q ss_pred ceEEEECCCCCCHHHHHHHHHhC----CCCCC----ccccceeeeeeeEEcC-----------CCcEEEEEEEeCCCCCC
Q psy549 50 RRVVVMGGARVGKSSIISQFLYD----RFISR----YKETVEELHRGEYELP-----------DGAQLTLDILDTSGAYQ 110 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~----~~~~~----~~~t~~~~~~~~~~~~-----------~~~~~~~~l~D~~g~~~ 110 (253)
++|+++|++++|||||+++|+.. .+... ...++.+.....+.+. ++..+.+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999972 12111 1123333333333331 23357889999999866
Q ss_pred ChhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccc----cHHHHHHHHHh----
Q psy549 111 FPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDV----RREIAETIALY---- 182 (253)
Q Consensus 111 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----~~~~~~~~~~~---- 182 (253)
+..........+|++++|+|+.+.........+.. ... .+.|+++|+||+|+..... ..+..+.+...
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~--~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~ 156 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVI--GEI--LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKT 156 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHH--HHH--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 54444445567899999999988654443333221 111 2579999999999874321 22222222221
Q ss_pred -cCCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy549 183 -DWQCGFVECSAKENYNIVQVFKELLAQA 210 (253)
Q Consensus 183 -~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 210 (253)
..+++++++||++|.|++++++++..++
T Consensus 157 ~~~~~~vi~iSa~~g~gi~~L~~~l~~~~ 185 (192)
T cd01889 157 RFKNSPIIPVSAKPGGGEAELGKDLNNLI 185 (192)
T ss_pred CcCCCCEEEEeccCCCCHHHHHHHHHhcc
Confidence 2467899999999999999999998877
No 158
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.86 E-value=6.4e-20 Score=157.65 Aligned_cols=158 Identities=19% Similarity=0.168 Sum_probs=120.0
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCCC-CCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCC----hhhHHHh---ccc
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDRF-ISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQF----PAMRELS---IST 121 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~----~~~~~~~---~~~ 121 (253)
..|+|+|.||||||||+++|++.+. +.+++.|+.......+.+.++ ..+.+||+||..+. ..+...+ ++.
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~--~~~~laD~PGliega~~~~gLg~~fLrhier 236 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDG--RSFVMADIPGLIEGASEGVGLGHQFLRHIER 236 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCC--ceEEEEECCCCcccccccchHHHHHHHHHhh
Confidence 4899999999999999999998764 467788888777777777323 46889999997542 2233333 456
Q ss_pred CCEEEEEEECCCh---hhHHHHHHHHHHHHHhcC--CCCCEEEEEecCCCCCccccHHHHHHHHHhcCCCcEEEeccCCC
Q psy549 122 ADAFVLVYAVDDA---STWDVVKDLREQIVNKRG--LMVPIVVVGNKCELEFKDVRREIAETIALYDWQCGFVECSAKEN 196 (253)
Q Consensus 122 ~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 196 (253)
++++|+|+|+++. .+++....|...+..+.. ..+|+++|+||+|+... .+..+.+.. ....+++++||+++
T Consensus 237 ~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~---~e~l~~l~~-~l~~~i~~iSA~tg 312 (424)
T PRK12297 237 TRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA---EENLEEFKE-KLGPKVFPISALTG 312 (424)
T ss_pred CCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC---HHHHHHHHH-HhCCcEEEEeCCCC
Confidence 9999999999864 567777777777776432 46899999999998532 233444554 23378999999999
Q ss_pred CCHHHHHHHHHHHHHHh
Q psy549 197 YNIVQVFKELLAQAKVQ 213 (253)
Q Consensus 197 ~~i~~l~~~l~~~~~~~ 213 (253)
.|+++++++|.+.+...
T Consensus 313 eGI~eL~~~L~~~l~~~ 329 (424)
T PRK12297 313 QGLDELLYAVAELLEET 329 (424)
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999887654
No 159
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.86 E-value=3.3e-20 Score=162.27 Aligned_cols=160 Identities=19% Similarity=0.219 Sum_probs=117.7
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCC--CCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhH---------
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDR--FISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMR--------- 115 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~--------- 115 (253)
...++|+++|.+|+|||||+|+|++.. .....+.|+.+.....+.. ++. .+.+|||||..++....
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~-~~~--~~~liDT~G~~~~~~~~~~~e~~~~~ 246 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFER-NGK--KYLLIDTAGIRRKGKVTEGVEKYSVL 246 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEE-CCc--EEEEEECCCccccccchhhHHHHHHH
Confidence 356899999999999999999999866 3566777877777777766 554 67899999976543221
Q ss_pred --HHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCC-ccccHHHHHHHHHh---cCCCcEE
Q psy549 116 --ELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEF-KDVRREIAETIALY---DWQCGFV 189 (253)
Q Consensus 116 --~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~---~~~~~~~ 189 (253)
...++.+|++++|+|++++.+..... ++..+.. .++|+++|+||+|+.. .....+....+... ...++++
T Consensus 247 ~~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi 322 (429)
T TIGR03594 247 RTLKAIERADVVLLVLDATEGITEQDLR-IAGLILE---AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIV 322 (429)
T ss_pred HHHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH---cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceE
Confidence 23678899999999999987766543 3333332 4589999999999872 22222233333321 2357899
Q ss_pred EeccCCCCCHHHHHHHHHHHHHHh
Q psy549 190 ECSAKENYNIVQVFKELLAQAKVQ 213 (253)
Q Consensus 190 ~~Sa~~~~~i~~l~~~l~~~~~~~ 213 (253)
++||++|.|+.++|+++.+.....
T Consensus 323 ~~SA~~g~~v~~l~~~i~~~~~~~ 346 (429)
T TIGR03594 323 FISALTGQGVDKLLDAIDEVYENA 346 (429)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999877654
No 160
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.86 E-value=2.3e-20 Score=164.50 Aligned_cols=154 Identities=20% Similarity=0.222 Sum_probs=113.1
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCCC--CCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCC--------ChhhHHH
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDRF--ISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQ--------FPAMREL 117 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--------~~~~~~~ 117 (253)
..++|+|+|.+|||||||+|+|++... ....+.++.+.....+.+ ++. .+.+|||||.+. +......
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~-~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~ 113 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEW-NGR--RFTVVDTGGWEPDAKGLQASVAEQAEV 113 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEE-CCc--EEEEEeCCCcCCcchhHHHHHHHHHHH
Confidence 347999999999999999999998763 455666667777777777 543 578999999763 2333445
Q ss_pred hcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHHhcCCCcEEEeccCCCC
Q psy549 118 SISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIALYDWQCGFVECSAKENY 197 (253)
Q Consensus 118 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 197 (253)
+++.+|++|+|+|+++..++.. ..+...+.. .++|+++|+||+|+.... .+..+.+.. ..+. ++++||++|.
T Consensus 114 ~~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~~~~--~~~~~~~~~-g~~~-~~~iSA~~g~ 185 (472)
T PRK03003 114 AMRTADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVDDERGE--ADAAALWSL-GLGE-PHPVSALHGR 185 (472)
T ss_pred HHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCccc--hhhHHHHhc-CCCC-eEEEEcCCCC
Confidence 7889999999999998866543 334443332 568999999999986432 222222222 3333 4799999999
Q ss_pred CHHHHHHHHHHHHHH
Q psy549 198 NIVQVFKELLAQAKV 212 (253)
Q Consensus 198 ~i~~l~~~l~~~~~~ 212 (253)
|++++|+++++.+..
T Consensus 186 gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 186 GVGDLLDAVLAALPE 200 (472)
T ss_pred CcHHHHHHHHhhccc
Confidence 999999999988754
No 161
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.86 E-value=3.5e-20 Score=144.08 Aligned_cols=153 Identities=18% Similarity=0.210 Sum_probs=108.5
Q ss_pred eEEEECCCCCCHHHHHHHHHhCCCCCCccc-----------------cceeeeeeeEEcCCCcEEEEEEEeCCCCCCChh
Q psy549 51 RVVVMGGARVGKSSIISQFLYDRFISRYKE-----------------TVEELHRGEYELPDGAQLTLDILDTSGAYQFPA 113 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~-----------------t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~ 113 (253)
+|+|+|.+|+|||||+++|++......... ++.......+.. ....+.+||+||...+..
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~liDtpG~~~~~~ 77 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEW---PDRRVNFIDTPGHEDFSS 77 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEee---CCEEEEEEeCCCcHHHHH
Confidence 589999999999999999998766433211 111222222222 245789999999999888
Q ss_pred hHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccc----cHHHHHHHHHh-------
Q psy549 114 MRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDV----RREIAETIALY------- 182 (253)
Q Consensus 114 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----~~~~~~~~~~~------- 182 (253)
.+..+++.+|++++|+|+.++..... ..++..+.. .+.|+++|+||+|+..... .....+.+...
T Consensus 78 ~~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (189)
T cd00881 78 EVIRGLSVSDGAILVVDANEGVQPQT-REHLRIARE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKE 153 (189)
T ss_pred HHHHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhh
Confidence 88889999999999999988765433 233333322 5689999999999876321 11222222221
Q ss_pred -----cCCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy549 183 -----DWQCGFVECSAKENYNIVQVFKELLAQA 210 (253)
Q Consensus 183 -----~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 210 (253)
....+++++|+++|.|+.+++++|.+.+
T Consensus 154 ~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 154 EGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred hhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 2367899999999999999999998876
No 162
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.86 E-value=3.1e-20 Score=161.53 Aligned_cols=163 Identities=17% Similarity=0.104 Sum_probs=119.4
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCCC-CCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCCh----hhH---HHh
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDRF-ISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFP----AMR---ELS 118 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~----~~~---~~~ 118 (253)
+....|+|+|.||||||||+|+|.+... +.+++.||.......+.+ ++ ..|.|||+||..+.. .+. ...
T Consensus 157 k~~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~-~~--~~f~laDtPGliegas~g~gLg~~fLrh 233 (500)
T PRK12296 157 KSVADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQA-GD--TRFTVADVPGLIPGASEGKGLGLDFLRH 233 (500)
T ss_pred cccceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEE-CC--eEEEEEECCCCccccchhhHHHHHHHHH
Confidence 4556899999999999999999998664 577888888888888877 33 478999999964321 121 224
Q ss_pred cccCCEEEEEEECCCh----hhHHHHHHHHHHHHHhc-----------CCCCCEEEEEecCCCCCcccc-HHHHHHHHHh
Q psy549 119 ISTADAFVLVYAVDDA----STWDVVKDLREQIVNKR-----------GLMVPIVVVGNKCELEFKDVR-REIAETIALY 182 (253)
Q Consensus 119 ~~~~d~~i~v~d~~~~----~s~~~~~~~~~~~~~~~-----------~~~~piilv~nK~Dl~~~~~~-~~~~~~~~~~ 182 (253)
++.+|++|+|+|+++. ..+..+..+..++..+. ....|+++|+||+|+.+.... ......+..
T Consensus 234 ieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~~- 312 (500)
T PRK12296 234 IERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELEA- 312 (500)
T ss_pred HHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHHH-
Confidence 5779999999999753 34555555555554432 135899999999999754222 222223333
Q ss_pred cCCCcEEEeccCCCCCHHHHHHHHHHHHHHhc
Q psy549 183 DWQCGFVECSAKENYNIVQVFKELLAQAKVQY 214 (253)
Q Consensus 183 ~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 214 (253)
.+++++++||+++.|+++++.+|.+.+....
T Consensus 313 -~g~~Vf~ISA~tgeGLdEL~~~L~ell~~~r 343 (500)
T PRK12296 313 -RGWPVFEVSAASREGLRELSFALAELVEEAR 343 (500)
T ss_pred -cCCeEEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence 3578999999999999999999999886643
No 163
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.85 E-value=3e-20 Score=140.64 Aligned_cols=143 Identities=14% Similarity=0.176 Sum_probs=97.7
Q ss_pred eEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhH----HHhcccCCEEE
Q psy549 51 RVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMR----ELSISTADAFV 126 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~----~~~~~~~d~~i 126 (253)
+|+++|.+|+|||||+|++.+..... .....+.+ ++. .+||+||.......+ ...+..+|+++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~~--------~~~~~v~~-~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il 69 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTLA--------RKTQAVEF-NDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI 69 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCccC--------ccceEEEE-CCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence 79999999999999999987653211 11122223 221 269999974332222 22478999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHH-HhcCCCcEEEeccCCCCCHHHHHHH
Q psy549 127 LVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIA-LYDWQCGFVECSAKENYNIVQVFKE 205 (253)
Q Consensus 127 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~-~~~~~~~~~~~Sa~~~~~i~~l~~~ 205 (253)
+|+|+++..++. ..|+..+ ..++|+++++||+|+.+. ..+....+. ......|++++||++|.|++++|++
T Consensus 70 ~v~d~~~~~s~~--~~~~~~~----~~~~~ii~v~nK~Dl~~~--~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~~ 141 (158)
T PRK15467 70 YVHGANDPESRL--PAGLLDI----GVSKRQIAVISKTDMPDA--DVAATRKLLLETGFEEPIFELNSHDPQSVQQLVDY 141 (158)
T ss_pred EEEeCCCccccc--CHHHHhc----cCCCCeEEEEEccccCcc--cHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHHH
Confidence 999999887653 2343332 245799999999998653 223333333 3233369999999999999999999
Q ss_pred HHHHHHHhc
Q psy549 206 LLAQAKVQY 214 (253)
Q Consensus 206 l~~~~~~~~ 214 (253)
+.+.+.+..
T Consensus 142 l~~~~~~~~ 150 (158)
T PRK15467 142 LASLTKQEE 150 (158)
T ss_pred HHHhchhhh
Confidence 998886553
No 164
>PRK11058 GTPase HflX; Provisional
Probab=99.85 E-value=6.4e-20 Score=158.52 Aligned_cols=157 Identities=15% Similarity=0.129 Sum_probs=114.5
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCCC-CCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCC--hhhHHH------hcc
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDRF-ISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQF--PAMREL------SIS 120 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~--~~~~~~------~~~ 120 (253)
++|+|+|.+|||||||+|+|++... ..+...++.+.....+.+.+.. .+.+|||+|..+. ..++.. .+.
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~--~~~l~DTaG~~r~lp~~lve~f~~tl~~~~ 275 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVG--ETVLADTVGFIRHLPHDLVAAFKATLQETR 275 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCC--eEEEEecCcccccCCHHHHHHHHHHHHHhh
Confidence 6899999999999999999998664 4556667777777777763332 5679999998442 333333 367
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHHhcCCCc-EEEeccCCCCCH
Q psy549 121 TADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIALYDWQCG-FVECSAKENYNI 199 (253)
Q Consensus 121 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i 199 (253)
.+|++|+|+|++++.++..+..|...+......++|+++|+||+|+....... ... . ..+.+ ++.+||++|.|+
T Consensus 276 ~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~~~--~~~-~--~~~~~~~v~ISAktG~GI 350 (426)
T PRK11058 276 QATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEPR--IDR-D--EENKPIRVWLSAQTGAGI 350 (426)
T ss_pred cCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchhHH--HHH-H--hcCCCceEEEeCCCCCCH
Confidence 89999999999999887776655554444444578999999999986431111 111 1 12334 588999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy549 200 VQVFKELLAQAKVQ 213 (253)
Q Consensus 200 ~~l~~~l~~~~~~~ 213 (253)
++++++|.+.+...
T Consensus 351 deL~e~I~~~l~~~ 364 (426)
T PRK11058 351 PLLFQALTERLSGE 364 (426)
T ss_pred HHHHHHHHHHhhhc
Confidence 99999999988543
No 165
>COG1159 Era GTPase [General function prediction only]
Probab=99.85 E-value=3.4e-20 Score=148.49 Aligned_cols=159 Identities=16% Similarity=0.150 Sum_probs=121.9
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCCC--CCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhH--------HH
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDRF--ISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMR--------EL 117 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~--------~~ 117 (253)
..--|+|+|.||||||||+|++++.+. ++..+.||++...+.++.++. .+.|+||||..+-.... ..
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~---QiIfvDTPGih~pk~~l~~~m~~~a~~ 81 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNA---QIIFVDTPGIHKPKHALGELMNKAARS 81 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCc---eEEEEeCCCCCCcchHHHHHHHHHHHH
Confidence 345789999999999999999999885 789999999999999998443 56799999966543222 22
Q ss_pred hcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccc-cHHHHHHHHHhcCCCcEEEeccCCC
Q psy549 118 SISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDV-RREIAETIALYDWQCGFVECSAKEN 196 (253)
Q Consensus 118 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~Sa~~~ 196 (253)
.+..+|++++|.|++++..- -..+....... .+.|+++++||+|..+... .....+.+........++++||++|
T Consensus 82 sl~dvDlilfvvd~~~~~~~--~d~~il~~lk~--~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g 157 (298)
T COG1159 82 ALKDVDLILFVVDADEGWGP--GDEFILEQLKK--TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKG 157 (298)
T ss_pred HhccCcEEEEEEeccccCCc--cHHHHHHHHhh--cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeecccc
Confidence 57789999999999985432 23333222222 4579999999999877644 3555666666556668999999999
Q ss_pred CCHHHHHHHHHHHHHHh
Q psy549 197 YNIVQVFKELLAQAKVQ 213 (253)
Q Consensus 197 ~~i~~l~~~l~~~~~~~ 213 (253)
.|++.+.+.+...+.+.
T Consensus 158 ~n~~~L~~~i~~~Lpeg 174 (298)
T COG1159 158 DNVDTLLEIIKEYLPEG 174 (298)
T ss_pred CCHHHHHHHHHHhCCCC
Confidence 99999999998887553
No 166
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.85 E-value=1.3e-20 Score=135.90 Aligned_cols=113 Identities=30% Similarity=0.487 Sum_probs=83.4
Q ss_pred eEEEECCCCCCHHHHHHHHHhCCCC--CCccccceeeee-eeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEE
Q psy549 51 RVVVMGGARVGKSSIISQFLYDRFI--SRYKETVEELHR-GEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVL 127 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~~~~~--~~~~~t~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 127 (253)
||+|+|++|||||||+++|++..+. ..+..+...... ..... +.....+.+||++|++.+...+..++..+|++++
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~il 79 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVV-DGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVIL 79 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEE-TTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEe-cCCceEEEEEecCccceecccccchhhcCcEEEE
Confidence 7999999999999999999998875 112222222222 23333 5555669999999999888877777999999999
Q ss_pred EEECCChhhHHHHHHH---HHHHHHhcCCCCCEEEEEecCC
Q psy549 128 VYAVDDASTWDVVKDL---REQIVNKRGLMVPIVVVGNKCE 165 (253)
Q Consensus 128 v~d~~~~~s~~~~~~~---~~~~~~~~~~~~piilv~nK~D 165 (253)
|||++++.+|+.+..+ +..+... ..++|+++|+||.|
T Consensus 80 v~D~s~~~s~~~~~~~~~~l~~~~~~-~~~~piilv~nK~D 119 (119)
T PF08477_consen 80 VYDLSDPESLEYLSQLLKWLKNIRKR-DKNIPIILVGNKSD 119 (119)
T ss_dssp EEECCGHHHHHHHHHHHHHHHHHHHH-SSCSEEEEEEE-TC
T ss_pred EEcCCChHHHHHHHHHHHHHHHHHcc-CCCCCEEEEEeccC
Confidence 9999999999987554 4444432 35699999999998
No 167
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.85 E-value=2.2e-19 Score=137.47 Aligned_cols=154 Identities=23% Similarity=0.252 Sum_probs=107.3
Q ss_pred cceEEEECCCCCCHHHHHHHHHhCCC--CCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChh----------h-H
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYDRF--ISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPA----------M-R 115 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~----------~-~ 115 (253)
.++|+++|++|+|||||+++|++... ....+.++.......+.. ++. .+.+||+||..+... . .
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~iiDtpG~~~~~~~~~~~e~~~~~~~ 78 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEY-DGK--KYTLIDTAGIRRKGKVEEGIEKYSVLRT 78 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEE-CCe--eEEEEECCCCccccchhccHHHHHHHHH
Confidence 57999999999999999999998763 344444555555555555 443 578999999754311 1 1
Q ss_pred HHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc--cccHHHHHHHHHhc---CCCcEEE
Q psy549 116 ELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK--DVRREIAETIALYD---WQCGFVE 190 (253)
Q Consensus 116 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~---~~~~~~~ 190 (253)
...+..+|++++|+|++++.+.... .++..+.. .+.|+++|+||+|+... .......+.+.... ...++++
T Consensus 79 ~~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (174)
T cd01895 79 LKAIERADVVLLVIDATEGITEQDL-RIAGLILE---EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVF 154 (174)
T ss_pred HHHHhhcCeEEEEEeCCCCcchhHH-HHHHHHHh---cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEE
Confidence 2246789999999999998775543 23332222 35899999999998765 22233333343322 2468999
Q ss_pred eccCCCCCHHHHHHHHHHH
Q psy549 191 CSAKENYNIVQVFKELLAQ 209 (253)
Q Consensus 191 ~Sa~~~~~i~~l~~~l~~~ 209 (253)
+|++++.|+.++++++.+.
T Consensus 155 ~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 155 ISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred EeccCCCCHHHHHHHHHHh
Confidence 9999999999999988753
No 168
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.84 E-value=1.2e-19 Score=137.86 Aligned_cols=154 Identities=18% Similarity=0.186 Sum_probs=106.5
Q ss_pred cceEEEECCCCCCHHHHHHHHHhCCCC--CCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhh--------HHHh
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYDRFI--SRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAM--------RELS 118 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~~~~ 118 (253)
..+|+++|++|+|||||+++|++.... .....++.......+.. ..+.+.+||+||....... ....
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 79 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTD---DDAQIIFVDTPGIHKPKKKLGERMVKAAWSA 79 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEc---CCeEEEEEECCCCCcchHHHHHHHHHHHHHH
Confidence 578999999999999999999987642 22223333333333322 2357889999997754332 2335
Q ss_pred cccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCC-ccccHHHHHHHHHhcCCCcEEEeccCCCC
Q psy549 119 ISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEF-KDVRREIAETIALYDWQCGFVECSAKENY 197 (253)
Q Consensus 119 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 197 (253)
+..+|++++|+|++++... ....+...+.. .+.|+++|+||+|+.. .....+....+.......+++++|++++.
T Consensus 80 ~~~~d~i~~v~d~~~~~~~-~~~~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 155 (168)
T cd04163 80 LKDVDLVLFVVDASEPIGE-GDEFILELLKK---SKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGE 155 (168)
T ss_pred HHhCCEEEEEEECCCccCc-hHHHHHHHHHH---hCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCC
Confidence 7789999999999987221 11222333332 2579999999999874 34445555566654445789999999999
Q ss_pred CHHHHHHHHHHH
Q psy549 198 NIVQVFKELLAQ 209 (253)
Q Consensus 198 ~i~~l~~~l~~~ 209 (253)
++++++++|.+.
T Consensus 156 ~~~~l~~~l~~~ 167 (168)
T cd04163 156 NVDELLEEIVKY 167 (168)
T ss_pred ChHHHHHHHHhh
Confidence 999999998764
No 169
>PRK00089 era GTPase Era; Reviewed
Probab=99.84 E-value=1.4e-19 Score=150.56 Aligned_cols=157 Identities=18% Similarity=0.176 Sum_probs=112.6
Q ss_pred cceEEEECCCCCCHHHHHHHHHhCCC--CCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChh--------hHHHh
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYDRF--ISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPA--------MRELS 118 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------~~~~~ 118 (253)
.-.|+|+|++|||||||+|+|++..+ ....+.|+.......+.. ++ ..+.+|||||...... .....
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~-~~--~qi~~iDTPG~~~~~~~l~~~~~~~~~~~ 81 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTE-DD--AQIIFVDTPGIHKPKRALNRAMNKAAWSS 81 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEc-CC--ceEEEEECCCCCCchhHHHHHHHHHHHHH
Confidence 35699999999999999999999875 455566666655555554 32 5788999999765432 22235
Q ss_pred cccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCC
Q psy549 119 ISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENY 197 (253)
Q Consensus 119 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 197 (253)
+..+|++++|+|+++.... ........+. ..+.|+++|+||+|+... .......+.+.......+++++||+++.
T Consensus 82 ~~~~D~il~vvd~~~~~~~-~~~~i~~~l~---~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~ 157 (292)
T PRK00089 82 LKDVDLVLFVVDADEKIGP-GDEFILEKLK---KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGD 157 (292)
T ss_pred HhcCCEEEEEEeCCCCCCh-hHHHHHHHHh---hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCC
Confidence 6789999999999883221 1122222222 245899999999999733 4444555666654456789999999999
Q ss_pred CHHHHHHHHHHHHHH
Q psy549 198 NIVQVFKELLAQAKV 212 (253)
Q Consensus 198 ~i~~l~~~l~~~~~~ 212 (253)
|++++++++.+.+..
T Consensus 158 gv~~L~~~L~~~l~~ 172 (292)
T PRK00089 158 NVDELLDVIAKYLPE 172 (292)
T ss_pred CHHHHHHHHHHhCCC
Confidence 999999999988743
No 170
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.84 E-value=1.3e-19 Score=142.70 Aligned_cols=118 Identities=14% Similarity=0.216 Sum_probs=91.5
Q ss_pred eEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccC-CEEEEEE
Q psy549 51 RVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTA-DAFVLVY 129 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~-d~~i~v~ 129 (253)
+|+++|++|||||||+++|..+.+...+.++..+........ .+..+.+.+||+||+.+++..+..+++.+ +++|+|+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~-~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv 80 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNS-EGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV 80 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeec-CCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence 689999999999999999999888766655544333322222 23456789999999999998888889998 9999999
Q ss_pred ECCCh-hhHHHHHHHHHHHHHh---cCCCCCEEEEEecCCCCCc
Q psy549 130 AVDDA-STWDVVKDLREQIVNK---RGLMVPIVVVGNKCELEFK 169 (253)
Q Consensus 130 d~~~~-~s~~~~~~~~~~~~~~---~~~~~piilv~nK~Dl~~~ 169 (253)
|+.+. .++.....|+..+... ....+|+++|+||+|+...
T Consensus 81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence 99987 6677766666554432 2357999999999998764
No 171
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.84 E-value=1.2e-19 Score=163.00 Aligned_cols=157 Identities=16% Similarity=0.227 Sum_probs=114.2
Q ss_pred cceEEEECCCCCCHHHHHHHHHhCC-------CCCCccccc------e-eeeee--eEEc--CCCcEEEEEEEeCCCCCC
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYDR-------FISRYKETV------E-ELHRG--EYEL--PDGAQLTLDILDTSGAYQ 110 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~~-------~~~~~~~t~------~-~~~~~--~~~~--~~~~~~~~~l~D~~g~~~ 110 (253)
.-+|+|+|+.++|||||+++|+... +...+..+. + +.... .+.+ .++..+.+.||||||+.+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 3589999999999999999999642 111111111 1 22222 1222 156678999999999999
Q ss_pred ChhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHHhcCCC---c
Q psy549 111 FPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIALYDWQC---G 187 (253)
Q Consensus 111 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~ 187 (253)
|...+..+++.+|++|+|+|++++.+++....|+..+. .++|+++|+||+|+.+.. .....+.+.. ..+. .
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~~-~~~~~~el~~-~lg~~~~~ 156 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSAD-PERVKKEIEE-VIGLDASE 156 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCccC-HHHHHHHHHH-HhCCCcce
Confidence 99999999999999999999999877777666655432 358999999999987532 2233344444 2222 4
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHH
Q psy549 188 FVECSAKENYNIVQVFKELLAQAK 211 (253)
Q Consensus 188 ~~~~Sa~~~~~i~~l~~~l~~~~~ 211 (253)
++++||++|.|+.++|++|.+.+.
T Consensus 157 vi~vSAktG~GI~~Lle~I~~~lp 180 (595)
T TIGR01393 157 AILASAKTGIGIEEILEAIVKRVP 180 (595)
T ss_pred EEEeeccCCCCHHHHHHHHHHhCC
Confidence 899999999999999999988763
No 172
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.83 E-value=1.6e-19 Score=152.65 Aligned_cols=155 Identities=21% Similarity=0.227 Sum_probs=123.1
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCC--CCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHH------
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDR--FISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMREL------ 117 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~------ 117 (253)
....++|+|+|.||||||||+|.|++.. ++.+.++||+|.....+.+ +| +.+.++||+|..+-....+.
T Consensus 214 lr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i-~G--~pv~l~DTAGiRet~d~VE~iGIeRs 290 (454)
T COG0486 214 LREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINL-NG--IPVRLVDTAGIRETDDVVERIGIERA 290 (454)
T ss_pred hhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEE-CC--EEEEEEecCCcccCccHHHHHHHHHH
Confidence 4577999999999999999999999866 5899999999999999999 76 57789999998876655543
Q ss_pred --hcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHHhcCCCcEEEeccCC
Q psy549 118 --SISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIALYDWQCGFVECSAKE 195 (253)
Q Consensus 118 --~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 195 (253)
.+..||.+++|+|.+.+.+-.+... +. ....+.|+++|.||.|+......... +...+.+++.+|+++
T Consensus 291 ~~~i~~ADlvL~v~D~~~~~~~~d~~~-~~----~~~~~~~~i~v~NK~DL~~~~~~~~~-----~~~~~~~~i~iSa~t 360 (454)
T COG0486 291 KKAIEEADLVLFVLDASQPLDKEDLAL-IE----LLPKKKPIIVVLNKADLVSKIELESE-----KLANGDAIISISAKT 360 (454)
T ss_pred HHHHHhCCEEEEEEeCCCCCchhhHHH-HH----hcccCCCEEEEEechhcccccccchh-----hccCCCceEEEEecC
Confidence 5778999999999998633222221 11 23366899999999999876443222 223455789999999
Q ss_pred CCCHHHHHHHHHHHHHHh
Q psy549 196 NYNIVQVFKELLAQAKVQ 213 (253)
Q Consensus 196 ~~~i~~l~~~l~~~~~~~ 213 (253)
+.|++.+.+.|.+.+...
T Consensus 361 ~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 361 GEGLDALREAIKQLFGKG 378 (454)
T ss_pred ccCHHHHHHHHHHHHhhc
Confidence 999999999999888766
No 173
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.83 E-value=2.8e-19 Score=156.68 Aligned_cols=146 Identities=21% Similarity=0.221 Sum_probs=109.0
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCC--CCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCC--------ChhhHHHhc
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDR--FISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQ--------FPAMRELSI 119 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--------~~~~~~~~~ 119 (253)
++|+|+|.+|||||||+|+|.+.. ++...+.++.+.....+.+ ++ ..+.+|||||.+. +......++
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~-~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 78 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEW-LG--REFILIDTGGIEPDDDGFEKQIREQAELAI 78 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEE-CC--cEEEEEECCCCCCcchhHHHHHHHHHHHHH
Confidence 589999999999999999999876 3566777777888888877 55 5789999999887 223344567
Q ss_pred ccCCEEEEEEECCChhhHHH--HHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHHhcCCC-cEEEeccCCC
Q psy549 120 STADAFVLVYAVDDASTWDV--VKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIALYDWQC-GFVECSAKEN 196 (253)
Q Consensus 120 ~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 196 (253)
..+|++|+|+|+.++.+... +..|+.. .++|+++|+||+|+.... .....+.. .+. .++++||++|
T Consensus 79 ~~ad~il~vvd~~~~~~~~~~~~~~~l~~------~~~piilv~NK~D~~~~~---~~~~~~~~--lg~~~~~~iSa~~g 147 (435)
T PRK00093 79 EEADVILFVVDGRAGLTPADEEIAKILRK------SNKPVILVVNKVDGPDEE---ADAYEFYS--LGLGEPYPISAEHG 147 (435)
T ss_pred HhCCEEEEEEECCCCCCHHHHHHHHHHHH------cCCcEEEEEECccCccch---hhHHHHHh--cCCCCCEEEEeeCC
Confidence 89999999999988644332 2333322 368999999999965421 22223322 233 4799999999
Q ss_pred CCHHHHHHHHHHH
Q psy549 197 YNIVQVFKELLAQ 209 (253)
Q Consensus 197 ~~i~~l~~~l~~~ 209 (253)
.|+.++|+++...
T Consensus 148 ~gv~~l~~~I~~~ 160 (435)
T PRK00093 148 RGIGDLLDAILEE 160 (435)
T ss_pred CCHHHHHHHHHhh
Confidence 9999999999873
No 174
>KOG0075|consensus
Probab=99.83 E-value=4.9e-20 Score=131.38 Aligned_cols=161 Identities=20% Similarity=0.286 Sum_probs=125.4
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEE
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFV 126 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 126 (253)
+.+..+.++|..++|||||+|.+..+.+..+..+|.+....+ + +...+.+.+||.+|+.+|+++|+.+++.+++++
T Consensus 18 k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk---~-tkgnvtiklwD~gGq~rfrsmWerycR~v~aiv 93 (186)
T KOG0075|consen 18 KEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRK---V-TKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIV 93 (186)
T ss_pred HheeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEE---e-ccCceEEEEEecCCCccHHHHHHHHhhcCcEEE
Confidence 356789999999999999999999988877666665433332 3 333478899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHH-hcCCCCCEEEEEecCCCCCccccHHHHHHHHHh---cCCCcEEEeccCCCCCHHHH
Q psy549 127 LVYAVDDASTWDVVKDLREQIVN-KRGLMVPIVVVGNKCELEFKDVRREIAETIALY---DWQCGFVECSAKENYNIVQV 202 (253)
Q Consensus 127 ~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~~~i~~l 202 (253)
+|.|+.+++....-...+..+.. ..-.++|+++.+||.|+++.-......+.+... ...+..|-+|+++..||+-+
T Consensus 94 Y~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~~Nid~~ 173 (186)
T KOG0075|consen 94 YVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEKVNIDIT 173 (186)
T ss_pred EEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEEcCCccHHHH
Confidence 99999998776654443333333 334679999999999999875555555555431 22356799999999999999
Q ss_pred HHHHHHHHH
Q psy549 203 FKELLAQAK 211 (253)
Q Consensus 203 ~~~l~~~~~ 211 (253)
.+|+++...
T Consensus 174 ~~Wli~hsk 182 (186)
T KOG0075|consen 174 LDWLIEHSK 182 (186)
T ss_pred HHHHHHHhh
Confidence 999998764
No 175
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.83 E-value=3.9e-19 Score=158.90 Aligned_cols=156 Identities=24% Similarity=0.308 Sum_probs=111.1
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCCCCCCc-cccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCE
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDRFISRY-KETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADA 124 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 124 (253)
.....+|+++|++++|||||+++|.+..+.... ...+.+.....+.+.++. .+.||||||++.|..++...+..+|+
T Consensus 84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~--~i~~iDTPGhe~F~~~r~rga~~aDi 161 (587)
T TIGR00487 84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGK--MITFLDTPGHEAFTSMRARGAKVTDI 161 (587)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCc--EEEEEECCCCcchhhHHHhhhccCCE
Confidence 345689999999999999999999987764432 334444444455553332 67999999999999999888999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHHh-----c--CCCcEEEeccCCCC
Q psy549 125 FVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIALY-----D--WQCGFVECSAKENY 197 (253)
Q Consensus 125 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~--~~~~~~~~Sa~~~~ 197 (253)
+++|+|+++....+....+ . .....++|+++++||+|+.+.. .......+... . ...+++++||++|.
T Consensus 162 aILVVda~dgv~~qT~e~i-~---~~~~~~vPiIVviNKiDl~~~~-~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGe 236 (587)
T TIGR00487 162 VVLVVAADDGVMPQTIEAI-S---HAKAANVPIIVAINKIDKPEAN-PDRVKQELSEYGLVPEDWGGDTIFVPVSALTGD 236 (587)
T ss_pred EEEEEECCCCCCHhHHHHH-H---HHHHcCCCEEEEEECcccccCC-HHHHHHHHHHhhhhHHhcCCCceEEEEECCCCC
Confidence 9999999875432332222 1 1122568999999999987531 12222222211 1 23579999999999
Q ss_pred CHHHHHHHHHH
Q psy549 198 NIVQVFKELLA 208 (253)
Q Consensus 198 ~i~~l~~~l~~ 208 (253)
|+.++|+++..
T Consensus 237 GI~eLl~~I~~ 247 (587)
T TIGR00487 237 GIDELLDMILL 247 (587)
T ss_pred ChHHHHHhhhh
Confidence 99999999875
No 176
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.82 E-value=3e-19 Score=140.70 Aligned_cols=158 Identities=15% Similarity=0.136 Sum_probs=97.9
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCCCCCCccccce--eeeee--eEEcC------------------------C--C----
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDRFISRYKETVE--ELHRG--EYELP------------------------D--G---- 95 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~--~~~~~--~~~~~------------------------~--~---- 95 (253)
++|+++|+.|+|||||+..+.+............ ..... .+.+. . +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 5799999999999999999975421110000000 00000 00000 0 1
Q ss_pred cEEEEEEEeCCCCCCChhhHHHhcccCCEEEEEEECCChhh-HHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHH
Q psy549 96 AQLTLDILDTSGAYQFPAMRELSISTADAFVLVYAVDDAST-WDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRRE 174 (253)
Q Consensus 96 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~ 174 (253)
....+.||||||+++|.......+..+|++++|+|+.++.. ..... .+..+... ...|+++|+||+|+.+......
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~-~l~~~~~~--~~~~iiivvNK~Dl~~~~~~~~ 157 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSE-HLAALEIM--GLKHIIIVQNKIDLVKEEQALE 157 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHH-HHHHHHHc--CCCcEEEEEEchhccCHHHHHH
Confidence 11578999999999887777778888999999999987421 11111 12222221 2247999999999876422111
Q ss_pred ---HHHHHHHh--cCCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy549 175 ---IAETIALY--DWQCGFVECSAKENYNIVQVFKELLAQA 210 (253)
Q Consensus 175 ---~~~~~~~~--~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 210 (253)
..+.+... ....+++++||++|.|++++|++|.+.+
T Consensus 158 ~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l 198 (203)
T cd01888 158 NYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI 198 (203)
T ss_pred HHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence 12222211 1357899999999999999999998765
No 177
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.82 E-value=6.2e-19 Score=162.27 Aligned_cols=159 Identities=19% Similarity=0.234 Sum_probs=117.4
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCCC--CCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCC----------ChhhH
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDRF--ISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQ----------FPAMR 115 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~~~~ 115 (253)
..++|+|+|.+|||||||+|+|++... +..+++|+.+.....+.+ ++. .+.+|||||..+ |..+.
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~-~~~--~~~liDTaG~~~~~~~~~~~e~~~~~r 525 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEI-DGE--DWLFIDTAGIKRRQHKLTGAEYYSSLR 525 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEE-CCC--EEEEEECCCcccCcccchhHHHHHHHH
Confidence 458999999999999999999999773 677788888888777777 555 456999999642 22222
Q ss_pred -HHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHHh---cCCCcEEEe
Q psy549 116 -ELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIALY---DWQCGFVEC 191 (253)
Q Consensus 116 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~ 191 (253)
...++.+|++++|+|++++.++..+. ++..+.. .++|+++|+||+|+.+........+.+... ....+++++
T Consensus 526 ~~~~i~~advvilViDat~~~s~~~~~-i~~~~~~---~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~i 601 (712)
T PRK09518 526 TQAAIERSELALFLFDASQPISEQDLK-VMSMAVD---AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNL 601 (712)
T ss_pred HHHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEE
Confidence 23478899999999999988877654 3333332 458999999999987542222222222221 234578999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHh
Q psy549 192 SAKENYNIVQVFKELLAQAKVQ 213 (253)
Q Consensus 192 Sa~~~~~i~~l~~~l~~~~~~~ 213 (253)
||++|.|++++|+.+.+.+...
T Consensus 602 SAktg~gv~~L~~~i~~~~~~~ 623 (712)
T PRK09518 602 SAKTGWHTNRLAPAMQEALESW 623 (712)
T ss_pred ECCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999988763
No 178
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.82 E-value=7.6e-19 Score=153.91 Aligned_cols=160 Identities=20% Similarity=0.237 Sum_probs=115.5
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCC--CCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChh----------h
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDR--FISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPA----------M 114 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~----------~ 114 (253)
...++|+|+|.+|+|||||+|+|++.. .....+.++.+.....+.. ++ ..+.+|||||..+... .
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~-~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~ 247 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFER-DG--QKYTLIDTAGIRRKGKVTEGVEKYSVI 247 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEE-CC--eeEEEEECCCCCCCcchhhHHHHHHHH
Confidence 357999999999999999999999765 3566667777777666666 44 3568999999654321 1
Q ss_pred H-HHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHHh---cCCCcEEE
Q psy549 115 R-ELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIALY---DWQCGFVE 190 (253)
Q Consensus 115 ~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~ 190 (253)
. ...++.+|++|+|+|++++.+..+.. ++..+.. .+.|+++|+||+|+.......+..+.+... ....++++
T Consensus 248 ~~~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~---~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~ 323 (435)
T PRK00093 248 RTLKAIERADVVLLVIDATEGITEQDLR-IAGLALE---AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVF 323 (435)
T ss_pred HHHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEE
Confidence 1 23678899999999999987766543 3333332 458999999999987543222333333221 34578999
Q ss_pred eccCCCCCHHHHHHHHHHHHHHh
Q psy549 191 CSAKENYNIVQVFKELLAQAKVQ 213 (253)
Q Consensus 191 ~Sa~~~~~i~~l~~~l~~~~~~~ 213 (253)
+||++|.|+.++|+.+.+.....
T Consensus 324 ~SA~~~~gv~~l~~~i~~~~~~~ 346 (435)
T PRK00093 324 ISALTGQGVDKLLEAIDEAYENA 346 (435)
T ss_pred EeCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999998866543
No 179
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.82 E-value=7.1e-19 Score=137.80 Aligned_cols=158 Identities=16% Similarity=0.157 Sum_probs=99.5
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeee-eeeEEcCCCcEEEEEEEeCCCCC----------CChhh
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELH-RGEYELPDGAQLTLDILDTSGAY----------QFPAM 114 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~l~D~~g~~----------~~~~~ 114 (253)
....++|+|+|++|+|||||+++|++..+...+..+..... ...+.. ...+.||||||.. ++...
T Consensus 21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~----~~~l~l~DtpG~~~~~~~~~~~~~~~~~ 96 (196)
T PRK00454 21 PDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV----NDKLRLVDLPGYGYAKVSKEEKEKWQKL 96 (196)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec----CCeEEEeCCCCCCCcCCCchHHHHHHHH
Confidence 44678999999999999999999998764333222222111 111112 2478999999953 22333
Q ss_pred HHHhccc---CCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHHh--cCCCcEE
Q psy549 115 RELSIST---ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIALY--DWQCGFV 189 (253)
Q Consensus 115 ~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~--~~~~~~~ 189 (253)
...++.. .+++++|+|..++...... .+...+. ..++|+++++||+|+.+....+...+.+... ....+++
T Consensus 97 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~---~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~ 172 (196)
T PRK00454 97 IEEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLK---EYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVI 172 (196)
T ss_pred HHHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHH---HcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceE
Confidence 3344444 4678888888775443321 1112222 1458999999999987642222222222211 1257899
Q ss_pred EeccCCCCCHHHHHHHHHHHHH
Q psy549 190 ECSAKENYNIVQVFKELLAQAK 211 (253)
Q Consensus 190 ~~Sa~~~~~i~~l~~~l~~~~~ 211 (253)
++|++++.|++++++.|.+.+.
T Consensus 173 ~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 173 LFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred EEEcCCCCCHHHHHHHHHHHhc
Confidence 9999999999999999988764
No 180
>KOG0096|consensus
Probab=99.82 E-value=8.3e-20 Score=135.81 Aligned_cols=164 Identities=21% Similarity=0.298 Sum_probs=139.2
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEE
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFV 126 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 126 (253)
...++++++|+.|.||||++++.+.+.|...+..|.+-.....+...+...++|..|||+|++.+..+...+|-++.++|
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi 87 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI 87 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence 45799999999999999999999999999999999885555555554555799999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHHHH
Q psy549 127 LVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIALYDWQCGFVECSAKENYNIVQVFKEL 206 (253)
Q Consensus 127 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 206 (253)
++||+.....+.++..|...+.... .++||++++||.|..+.++...-. .+.. ..++.++++|++.+-|.+.-|-|+
T Consensus 88 imFdVtsr~t~~n~~rwhrd~~rv~-~NiPiv~cGNKvDi~~r~~k~k~v-~~~r-kknl~y~~iSaksn~NfekPFl~L 164 (216)
T KOG0096|consen 88 IMFDVTSRFTYKNVPRWHRDLVRVR-ENIPIVLCGNKVDIKARKVKAKPV-SFHR-KKNLQYYEISAKSNYNFERPFLWL 164 (216)
T ss_pred EEeeeeehhhhhcchHHHHHHHHHh-cCCCeeeeccceeccccccccccc-eeee-cccceeEEeecccccccccchHHH
Confidence 9999999999999999999988865 569999999999987654322222 1222 467889999999999999999999
Q ss_pred HHHHHHh
Q psy549 207 LAQAKVQ 213 (253)
Q Consensus 207 ~~~~~~~ 213 (253)
++.+..+
T Consensus 165 arKl~G~ 171 (216)
T KOG0096|consen 165 ARKLTGD 171 (216)
T ss_pred hhhhcCC
Confidence 9988665
No 181
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.81 E-value=7.3e-19 Score=153.83 Aligned_cols=151 Identities=20% Similarity=0.247 Sum_probs=111.4
Q ss_pred eEEEECCCCCCHHHHHHHHHhCC--CCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCC--------ChhhHHHhcc
Q psy549 51 RVVVMGGARVGKSSIISQFLYDR--FISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQ--------FPAMRELSIS 120 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--------~~~~~~~~~~ 120 (253)
+|+|+|.+|||||||+|+|++.. ++.+.++++.+.....+.+ ++. .+.+|||||... +......+++
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~-~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 77 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEW-GGR--EFILIDTGGIEEDDDGLDKQIREQAEIAIE 77 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEE-CCe--EEEEEECCCCCCcchhHHHHHHHHHHHHHh
Confidence 58999999999999999999866 3566777888888888777 553 589999999743 3344455788
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHHhcCCCcEEEeccCCCCCHH
Q psy549 121 TADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIALYDWQCGFVECSAKENYNIV 200 (253)
Q Consensus 121 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 200 (253)
.+|++++|+|+.++.+... ..+...+.. .++|+++|+||+|+...... ...+.. ....+++++||.+|.|+.
T Consensus 78 ~ad~vl~vvD~~~~~~~~d-~~i~~~l~~---~~~piilVvNK~D~~~~~~~---~~~~~~-lg~~~~~~vSa~~g~gv~ 149 (429)
T TIGR03594 78 EADVILFVVDGREGLTPED-EEIAKWLRK---SGKPVILVANKIDGKKEDAV---AAEFYS-LGFGEPIPISAEHGRGIG 149 (429)
T ss_pred hCCEEEEEEeCCCCCCHHH-HHHHHHHHH---hCCCEEEEEECccCCccccc---HHHHHh-cCCCCeEEEeCCcCCChH
Confidence 9999999999987654333 122222222 45899999999998754322 122333 233378999999999999
Q ss_pred HHHHHHHHHHHH
Q psy549 201 QVFKELLAQAKV 212 (253)
Q Consensus 201 ~l~~~l~~~~~~ 212 (253)
++++++.+.+..
T Consensus 150 ~ll~~i~~~l~~ 161 (429)
T TIGR03594 150 DLLDAILELLPE 161 (429)
T ss_pred HHHHHHHHhcCc
Confidence 999999887743
No 182
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.81 E-value=5.2e-19 Score=136.74 Aligned_cols=145 Identities=15% Similarity=0.181 Sum_probs=94.1
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCCCCC---CccccceeeeeeeEEcCCCcEEEEEEEeCCCCCC----------Ch
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDRFIS---RYKETVEELHRGEYELPDGAQLTLDILDTSGAYQ----------FP 112 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~ 112 (253)
....++|+|+|++|+|||||+++|.+..+.. ....++.+.. .+.. ++ .+.+||+||... +.
T Consensus 15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~--~~~~-~~---~~~liDtpG~~~~~~~~~~~~~~~ 88 (179)
T TIGR03598 15 PDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLIN--FFEV-ND---GFRLVDLPGYGYAKVSKEEKEKWQ 88 (179)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEE--EEEe-CC---cEEEEeCCCCccccCChhHHHHHH
Confidence 4677899999999999999999999876322 2223332222 2222 32 578999999532 22
Q ss_pred hhHHHhcc---cCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCcc----ccHHHHHHHHHhcCC
Q psy549 113 AMRELSIS---TADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKD----VRREIAETIALYDWQ 185 (253)
Q Consensus 113 ~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~----~~~~~~~~~~~~~~~ 185 (253)
.+...+++ .++++++|+|++.+.+..... ++..+.. .++|+++|+||+|+.... ...+..+.+......
T Consensus 89 ~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~-~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~ 164 (179)
T TIGR03598 89 KLIEEYLEKRENLKGVVLLMDIRHPLKELDLE-MLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADD 164 (179)
T ss_pred HHHHHHHHhChhhcEEEEEecCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCC
Confidence 33334444 358999999998865544432 2333322 468999999999987542 223333344332334
Q ss_pred CcEEEeccCCCCCHH
Q psy549 186 CGFVECSAKENYNIV 200 (253)
Q Consensus 186 ~~~~~~Sa~~~~~i~ 200 (253)
.+++++||++|.|++
T Consensus 165 ~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 165 PSVQLFSSLKKTGID 179 (179)
T ss_pred CceEEEECCCCCCCC
Confidence 689999999999873
No 183
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.81 E-value=7.3e-19 Score=159.48 Aligned_cols=159 Identities=21% Similarity=0.319 Sum_probs=112.1
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCCCCCCcc-ccceee--eeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccC
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDRFISRYK-ETVEEL--HRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTA 122 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~-~t~~~~--~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~ 122 (253)
.....+|+|+|+.++|||||+++|....+..... ..+.+. +...+.. ++..+.+.||||||++.|..++...+..+
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~-~~~~~kItfiDTPGhe~F~~mr~rg~~~a 319 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEY-KDENQKIVFLDTPGHEAFSSMRSRGANVT 319 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEe-cCCceEEEEEECCcHHHHHHHHHHHHHHC
Confidence 4566899999999999999999999876643222 222222 2222233 34457899999999999999999999999
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHH-------hcCCCcEEEeccCC
Q psy549 123 DAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIAL-------YDWQCGFVECSAKE 195 (253)
Q Consensus 123 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-------~~~~~~~~~~Sa~~ 195 (253)
|++|+|+|++++...+....+. .+ ...++|+++|+||+|+..... ......+.. ....++++++||++
T Consensus 320 DiaILVVDA~dGv~~QT~E~I~-~~---k~~~iPiIVViNKiDl~~~~~-e~v~~eL~~~~ll~e~~g~~vpvv~VSAkt 394 (742)
T CHL00189 320 DIAILIIAADDGVKPQTIEAIN-YI---QAANVPIIVAINKIDKANANT-ERIKQQLAKYNLIPEKWGGDTPMIPISASQ 394 (742)
T ss_pred CEEEEEEECcCCCChhhHHHHH-HH---HhcCceEEEEEECCCccccCH-HHHHHHHHHhccchHhhCCCceEEEEECCC
Confidence 9999999998854333323222 12 225689999999999875321 222222221 12237899999999
Q ss_pred CCCHHHHHHHHHHHH
Q psy549 196 NYNIVQVFKELLAQA 210 (253)
Q Consensus 196 ~~~i~~l~~~l~~~~ 210 (253)
|.|+.++|+++....
T Consensus 395 G~GIdeLle~I~~l~ 409 (742)
T CHL00189 395 GTNIDKLLETILLLA 409 (742)
T ss_pred CCCHHHHHHhhhhhh
Confidence 999999999988764
No 184
>KOG0071|consensus
Probab=99.81 E-value=7.3e-19 Score=124.47 Aligned_cols=159 Identities=15% Similarity=0.212 Sum_probs=120.9
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEE
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVL 127 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 127 (253)
.+++|+.+|..++||||++..|.-+...... +|. -+....+++ +.++|.+||++|++..+.+|..+|.+..++|+
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~i-pTv-GFnvetVty---kN~kfNvwdvGGqd~iRplWrhYy~gtqglIF 90 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQSVTTI-PTV-GFNVETVTY---KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 90 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCCCcccc-ccc-ceeEEEEEe---eeeEEeeeeccCchhhhHHHHhhccCCceEEE
Confidence 4799999999999999999999987764332 222 233344445 44789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHH-hcCCCCCEEEEEecCCCCCccccHHHHHHHHHh---cCCCcEEEeccCCCCCHHHHH
Q psy549 128 VYAVDDASTWDVVKDLREQIVN-KRGLMVPIVVVGNKCELEFKDVRREIAETIALY---DWQCGFVECSAKENYNIVQVF 203 (253)
Q Consensus 128 v~d~~~~~s~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~~~i~~l~ 203 (253)
|.|..+....+.....+..+.. ..-...|+++.+||.|++.....+++.+.+... ...+.+.++|+.+|.++.|-|
T Consensus 91 V~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~egl 170 (180)
T KOG0071|consen 91 VVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKEGL 170 (180)
T ss_pred EEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCccEeeccccccchhHHHHH
Confidence 9999987555544433333332 222458999999999999986666666655442 234567889999999999999
Q ss_pred HHHHHHHH
Q psy549 204 KELLAQAK 211 (253)
Q Consensus 204 ~~l~~~~~ 211 (253)
.|+...+.
T Consensus 171 swlsnn~~ 178 (180)
T KOG0071|consen 171 SWLSNNLK 178 (180)
T ss_pred HHHHhhcc
Confidence 99987653
No 185
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.81 E-value=1.1e-18 Score=159.73 Aligned_cols=156 Identities=24% Similarity=0.297 Sum_probs=111.4
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCCCCCC-ccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCE
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDRFISR-YKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADA 124 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 124 (253)
......|+|+|+.++|||||+++|.+..+... ....+.+.....+.+ ++ ..+.||||||++.|..++...+..+|+
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~-~~--~~ItfiDTPGhe~F~~m~~rga~~aDi 363 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVET-NG--GKITFLDTPGHEAFTAMRARGAQVTDI 363 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEE-CC--EEEEEEECCCCccchhHHHhhhhhCCE
Confidence 45678999999999999999999998776432 222333333344555 33 568999999999999999988999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHH------H-hcCCCcEEEeccCCCC
Q psy549 125 FVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIA------L-YDWQCGFVECSAKENY 197 (253)
Q Consensus 125 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~------~-~~~~~~~~~~Sa~~~~ 197 (253)
+|+|+|+++...-+....|. .....++|+++|+||+|+.+... ......+. . ....++++++||++|.
T Consensus 364 aILVVdAddGv~~qT~e~i~----~a~~~~vPiIVviNKiDl~~a~~-e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~ 438 (787)
T PRK05306 364 VVLVVAADDGVMPQTIEAIN----HAKAAGVPIIVAINKIDKPGANP-DRVKQELSEYGLVPEEWGGDTIFVPVSAKTGE 438 (787)
T ss_pred EEEEEECCCCCCHhHHHHHH----HHHhcCCcEEEEEECccccccCH-HHHHHHHHHhcccHHHhCCCceEEEEeCCCCC
Confidence 99999999853322222222 22225689999999999965321 11222221 1 1224789999999999
Q ss_pred CHHHHHHHHHHH
Q psy549 198 NIVQVFKELLAQ 209 (253)
Q Consensus 198 ~i~~l~~~l~~~ 209 (253)
|+.++|++|...
T Consensus 439 GI~eLle~I~~~ 450 (787)
T PRK05306 439 GIDELLEAILLQ 450 (787)
T ss_pred CchHHHHhhhhh
Confidence 999999998764
No 186
>KOG4423|consensus
Probab=99.81 E-value=1.2e-21 Score=145.13 Aligned_cols=168 Identities=26% Similarity=0.386 Sum_probs=145.5
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEE
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAF 125 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 125 (253)
..-+++.|+|.-|+|||+++.+.+...+...|..|+. ++..+.+...+...+++++||..|+++|..++..+|+.+.+.
T Consensus 23 ~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~ 102 (229)
T KOG4423|consen 23 EHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGA 102 (229)
T ss_pred hhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcce
Confidence 3467999999999999999999999999888888887 777888888666678999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHh----cCCCCCEEEEEecCCCCCccccH--HHHHHHHHhcCCCcEEEeccCCCCCH
Q psy549 126 VLVYAVDDASTWDVVKDLREQIVNK----RGLMVPIVVVGNKCELEFKDVRR--EIAETIALYDWQCGFVECSAKENYNI 199 (253)
Q Consensus 126 i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~~i 199 (253)
++|||++....|+.+..|.+.+... .+..+|+++..||||.......+ .....+++.+....++++|++.+.++
T Consensus 103 ~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkni 182 (229)
T KOG4423|consen 103 FIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKNI 182 (229)
T ss_pred EEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccCh
Confidence 9999999999999999999988773 33457889999999988763333 55666777566678999999999999
Q ss_pred HHHHHHHHHHHHHhc
Q psy549 200 VQVFKELLAQAKVQY 214 (253)
Q Consensus 200 ~~l~~~l~~~~~~~~ 214 (253)
.|+...+++.+..+.
T Consensus 183 ~Ea~r~lVe~~lvnd 197 (229)
T KOG4423|consen 183 PEAQRELVEKILVND 197 (229)
T ss_pred hHHHHHHHHHHHhhc
Confidence 999999999987764
No 187
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.81 E-value=8.8e-19 Score=136.49 Aligned_cols=158 Identities=20% Similarity=0.233 Sum_probs=107.8
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCCCCCCc-------------------cccceeeeeeeEEcCCCcEEEEEEEeCCCC
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDRFISRY-------------------KETVEELHRGEYELPDGAQLTLDILDTSGA 108 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~-------------------~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~ 108 (253)
+.++|+++|+.++|||||+++|+........ ...+.+.....+.. +.....+.++|+||+
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~-~~~~~~i~~iDtPG~ 80 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEK-NENNRKITLIDTPGH 80 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEB-TESSEEEEEEEESSS
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccc-cccccceeecccccc
Confidence 4679999999999999999999964321000 00111222222221 234568899999999
Q ss_pred CCChhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCcc---ccHHHHHHHHHhc--
Q psy549 109 YQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKD---VRREIAETIALYD-- 183 (253)
Q Consensus 109 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~-- 183 (253)
..|.......+..+|++|+|+|+.++..... ...+..+.. .++|+++|+||+|+.... ...+....+.+..
T Consensus 81 ~~f~~~~~~~~~~~D~ailvVda~~g~~~~~-~~~l~~~~~---~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~ 156 (188)
T PF00009_consen 81 EDFIKEMIRGLRQADIAILVVDANDGIQPQT-EEHLKILRE---LGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGE 156 (188)
T ss_dssp HHHHHHHHHHHTTSSEEEEEEETTTBSTHHH-HHHHHHHHH---TT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTS
T ss_pred cceeecccceecccccceeeeeccccccccc-ccccccccc---cccceEEeeeeccchhhhHHHHHHHHHHHhcccccc
Confidence 9998888888999999999999998755433 223333333 458999999999988432 2222232332211
Q ss_pred ---CCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy549 184 ---WQCGFVECSAKENYNIVQVFKELLAQA 210 (253)
Q Consensus 184 ---~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 210 (253)
..++++++||++|.|+.++++.|.+.+
T Consensus 157 ~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 157 NGEEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp TTTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred CccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 146899999999999999999998875
No 188
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.81 E-value=1.6e-18 Score=146.32 Aligned_cols=151 Identities=19% Similarity=0.164 Sum_probs=114.5
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCC--CCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCCh---------hhHHHh
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDR--FISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFP---------AMRELS 118 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~---------~~~~~~ 118 (253)
..|+|+|.||||||||+|+|++.+ ++.+++++|+|..+....+ .+. .|.++||+|.+... ......
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~-~~~--~f~lIDTgGl~~~~~~~l~~~i~~Qa~~A 80 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEW-LGR--EFILIDTGGLDDGDEDELQELIREQALIA 80 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEE-cCc--eEEEEECCCCCcCCchHHHHHHHHHHHHH
Confidence 679999999999999999999977 4899999999999999998 554 48999999977432 223347
Q ss_pred cccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHHhcCCCcEEEeccCCCCC
Q psy549 119 ISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIALYDWQCGFVECSAKENYN 198 (253)
Q Consensus 119 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 198 (253)
+..||++|+|+|...+-+-.+ ......+. ..++|+++|+||+|-.. .... ...+.. .+.-.++.+||..|.|
T Consensus 81 i~eADvilfvVD~~~Git~~D-~~ia~~Lr---~~~kpviLvvNK~D~~~--~e~~-~~efys-lG~g~~~~ISA~Hg~G 152 (444)
T COG1160 81 IEEADVILFVVDGREGITPAD-EEIAKILR---RSKKPVILVVNKIDNLK--AEEL-AYEFYS-LGFGEPVPISAEHGRG 152 (444)
T ss_pred HHhCCEEEEEEeCCCCCCHHH-HHHHHHHH---hcCCCEEEEEEcccCch--hhhh-HHHHHh-cCCCCceEeehhhccC
Confidence 788999999999988654333 11222222 25589999999999652 2222 333333 2334578999999999
Q ss_pred HHHHHHHHHHHHH
Q psy549 199 IVQVFKELLAQAK 211 (253)
Q Consensus 199 i~~l~~~l~~~~~ 211 (253)
+.++++++...+.
T Consensus 153 i~dLld~v~~~l~ 165 (444)
T COG1160 153 IGDLLDAVLELLP 165 (444)
T ss_pred HHHHHHHHHhhcC
Confidence 9999999999873
No 189
>KOG0076|consensus
Probab=99.81 E-value=2.1e-19 Score=131.82 Aligned_cols=165 Identities=17% Similarity=0.200 Sum_probs=126.6
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCC---C---CCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhc
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDR---F---ISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSI 119 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~---~---~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~ 119 (253)
.+..+.|+|+|..++|||||+.+..... + ......++.-...+++.+ + ..++.|||..|++..+++|..+|
T Consensus 14 ~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v-~--~~~l~fwdlgGQe~lrSlw~~yY 90 (197)
T KOG0076|consen 14 KKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEV-C--NAPLSFWDLGGQESLRSLWKKYY 90 (197)
T ss_pred hhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceee-c--cceeEEEEcCChHHHHHHHHHHH
Confidence 4567899999999999999999877532 1 222333444445555555 3 34789999999999999999999
Q ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHHh-cCCCCCEEEEEecCCCCCccccHHHHHHHH--H--hcCCCcEEEeccC
Q psy549 120 STADAFVLVYAVDDASTWDVVKDLREQIVNK-RGLMVPIVVVGNKCELEFKDVRREIAETIA--L--YDWQCGFVECSAK 194 (253)
Q Consensus 120 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~--~--~~~~~~~~~~Sa~ 194 (253)
..++++|+++|+++++-|+.....+..+... ...+.|+++.+||.|+.+.....++-..+. . .....++.++||.
T Consensus 91 ~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSal 170 (197)
T KOG0076|consen 91 WLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQPVSAL 170 (197)
T ss_pred HHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccCccccchhh
Confidence 9999999999999998888766655444443 336799999999999988754444444443 1 1245679999999
Q ss_pred CCCCHHHHHHHHHHHHHHh
Q psy549 195 ENYNIVQVFKELLAQAKVQ 213 (253)
Q Consensus 195 ~~~~i~~l~~~l~~~~~~~ 213 (253)
+|.||++-..|+...+.+.
T Consensus 171 ~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 171 TGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred hcccHHHHHHHHHHHHhhc
Confidence 9999999999999998665
No 190
>KOG1673|consensus
Probab=99.81 E-value=2.5e-19 Score=129.00 Aligned_cols=163 Identities=21% Similarity=0.378 Sum_probs=137.0
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCE
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADA 124 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 124 (253)
+.-.++|.++|++..|||||+-.+.++.+...+..+.+ ++..+.+.+ .+..+.+.+||..|++++..+.+....++-+
T Consensus 17 n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i-~~t~IsfSIwdlgG~~~~~n~lPiac~dsva 95 (205)
T KOG1673|consen 17 NLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSI-RGTDISFSIWDLGGQREFINMLPIACKDSVA 95 (205)
T ss_pred cceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEe-cceEEEEEEEecCCcHhhhccCceeecCcEE
Confidence 44578999999999999999999999988777777766 888888888 8888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc---c---ccHHHHHHHHHhcCCCcEEEeccCCCCC
Q psy549 125 FVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK---D---VRREIAETIALYDWQCGFVECSAKENYN 198 (253)
Q Consensus 125 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~---~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 198 (253)
++++||++.+.++..+..|+.........-+|+ +|++|.|+.-. + .....+..+++ -.+.+.|.+|+....|
T Consensus 96 IlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPi-lvGTKyD~fi~lp~e~Q~~I~~qar~YAk-~mnAsL~F~Sts~sIN 173 (205)
T KOG1673|consen 96 ILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPI-LVGTKYDLFIDLPPELQETISRQARKYAK-VMNASLFFCSTSHSIN 173 (205)
T ss_pred EEEEEecCchHHHHHHHHHHHHHhccCCccceE-EeccchHhhhcCCHHHHHHHHHHHHHHHH-HhCCcEEEeecccccc
Confidence 999999999999999999999887766666775 56999996433 1 12233455666 5678899999999999
Q ss_pred HHHHHHHHHHHHH
Q psy549 199 IVQVFKELLAQAK 211 (253)
Q Consensus 199 i~~l~~~l~~~~~ 211 (253)
+..+|..+...+-
T Consensus 174 v~KIFK~vlAklF 186 (205)
T KOG1673|consen 174 VQKIFKIVLAKLF 186 (205)
T ss_pred HHHHHHHHHHHHh
Confidence 9999998877663
No 191
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.80 E-value=4e-18 Score=156.94 Aligned_cols=155 Identities=22% Similarity=0.228 Sum_probs=111.3
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCCC--CCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCC--------ChhhHH
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDRF--ISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQ--------FPAMRE 116 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--------~~~~~~ 116 (253)
....+|+|+|.+|||||||+|+|++... +...+.++.+.......+ ++ ..+.+|||||.+. +.....
T Consensus 273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~-~~--~~~~liDT~G~~~~~~~~~~~~~~~~~ 349 (712)
T PRK09518 273 KAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEW-AG--TDFKLVDTGGWEADVEGIDSAIASQAQ 349 (712)
T ss_pred ccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEE-CC--EEEEEEeCCCcCCCCccHHHHHHHHHH
Confidence 3457899999999999999999998763 556667777777666666 44 4688999999764 233344
Q ss_pred HhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHHhcCCCcEEEeccCCC
Q psy549 117 LSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIALYDWQCGFVECSAKEN 196 (253)
Q Consensus 117 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 196 (253)
.+++.+|++|+|+|+.+...... ..|...+.. .++|+++|+||+|+.... ....+.+.. ... .++++||++|
T Consensus 350 ~~~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~---~~~pvIlV~NK~D~~~~~--~~~~~~~~l-g~~-~~~~iSA~~g 421 (712)
T PRK09518 350 IAVSLADAVVFVVDGQVGLTSTD-ERIVRMLRR---AGKPVVLAVNKIDDQASE--YDAAEFWKL-GLG-EPYPISAMHG 421 (712)
T ss_pred HHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHh---cCCCEEEEEECcccccch--hhHHHHHHc-CCC-CeEEEECCCC
Confidence 56889999999999987533222 234444332 568999999999986432 122222222 333 3579999999
Q ss_pred CCHHHHHHHHHHHHHH
Q psy549 197 YNIVQVFKELLAQAKV 212 (253)
Q Consensus 197 ~~i~~l~~~l~~~~~~ 212 (253)
.||.++|+++++.+..
T Consensus 422 ~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 422 RGVGDLLDEALDSLKV 437 (712)
T ss_pred CCchHHHHHHHHhccc
Confidence 9999999999998754
No 192
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.80 E-value=1.1e-18 Score=156.86 Aligned_cols=145 Identities=19% Similarity=0.243 Sum_probs=108.9
Q ss_pred CCCCCCHHHHHHHHHhCCC-CCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhh------HHHhc--ccCCEEE
Q psy549 56 GGARVGKSSIISQFLYDRF-ISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAM------RELSI--STADAFV 126 (253)
Q Consensus 56 G~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~------~~~~~--~~~d~~i 126 (253)
|++|||||||+|++.+... ..+++.++.+.....+.+ ++. .+.+||+||++++... ...++ ..+|+++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~-~~~--~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI 77 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGF-QGE--DIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVV 77 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEE-CCe--EEEEEECCCccccCccchHHHHHHHHHhhcCCCEEE
Confidence 8999999999999998775 566777777777777777 543 5789999999887543 22232 4789999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHHHH
Q psy549 127 LVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIALYDWQCGFVECSAKENYNIVQVFKEL 206 (253)
Q Consensus 127 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 206 (253)
+|+|.++.+. ...+...+. ..++|+++|+||+|+.+........+.+++ ..+++++++||++|.|++++++++
T Consensus 78 ~VvDat~ler---~l~l~~ql~---~~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~-~lg~pvv~tSA~tg~Gi~eL~~~i 150 (591)
T TIGR00437 78 NVVDASNLER---NLYLTLQLL---ELGIPMILALNLVDEAEKKGIRIDEEKLEE-RLGVPVVPTSATEGRGIERLKDAI 150 (591)
T ss_pred EEecCCcchh---hHHHHHHHH---hcCCCEEEEEehhHHHHhCCChhhHHHHHH-HcCCCEEEEECCCCCCHHHHHHHH
Confidence 9999987432 122222222 256899999999998765333344566766 567899999999999999999999
Q ss_pred HHHH
Q psy549 207 LAQA 210 (253)
Q Consensus 207 ~~~~ 210 (253)
.+.+
T Consensus 151 ~~~~ 154 (591)
T TIGR00437 151 RKAI 154 (591)
T ss_pred HHHh
Confidence 8764
No 193
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.80 E-value=2.4e-18 Score=154.43 Aligned_cols=157 Identities=17% Similarity=0.135 Sum_probs=109.6
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCC---CCCCc-cccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEE
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDR---FISRY-KETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAF 125 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~---~~~~~-~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 125 (253)
+.|+++|++++|||||+++|++.. +..++ ...+.+.....+.+ ++ ..+.|||+||+++|.......+.++|++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~-~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~a 77 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPL-PD--YRLGFIDVPGHEKFISNAIAGGGGIDAA 77 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEe-CC--EEEEEEECCCHHHHHHHHHhhhccCCEE
Confidence 479999999999999999999633 32222 22333444445555 33 6789999999999988888888999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCC-EEEEEecCCCCCccc---cHHHHHHHHHhc-C--CCcEEEeccCCCCC
Q psy549 126 VLVYAVDDASTWDVVKDLREQIVNKRGLMVP-IVVVGNKCELEFKDV---RREIAETIALYD-W--QCGFVECSAKENYN 198 (253)
Q Consensus 126 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~---~~~~~~~~~~~~-~--~~~~~~~Sa~~~~~ 198 (253)
++|+|++++...+..+ .+..+.. .++| +++|+||+|+.+... ..+....+.... . +.+++++|+++|.|
T Consensus 78 ILVVDa~~G~~~qT~e-hl~il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~G 153 (581)
T TIGR00475 78 LLVVDADEGVMTQTGE-HLAVLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQG 153 (581)
T ss_pred EEEEECCCCCcHHHHH-HHHHHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCC
Confidence 9999999843222211 1222222 3577 999999999976421 122233333212 1 57899999999999
Q ss_pred HHHHHHHHHHHHHHh
Q psy549 199 IVQVFKELLAQAKVQ 213 (253)
Q Consensus 199 i~~l~~~l~~~~~~~ 213 (253)
++++++++...+...
T Consensus 154 I~eL~~~L~~l~~~~ 168 (581)
T TIGR00475 154 IGELKKELKNLLESL 168 (581)
T ss_pred chhHHHHHHHHHHhC
Confidence 999999988776543
No 194
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.80 E-value=2.5e-18 Score=145.16 Aligned_cols=157 Identities=22% Similarity=0.277 Sum_probs=118.8
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCC--CCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCC----------ChhhH
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDR--FISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQ----------FPAMR 115 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~~~~ 115 (253)
..++|+|+|.||+|||||+|+|++++ ++.+.++||++.....+.+ +++ .+.++||+|..+ |....
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~-~~~--~~~liDTAGiRrk~ki~e~~E~~Sv~r 253 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFER-DGR--KYVLIDTAGIRRKGKITESVEKYSVAR 253 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEE-CCe--EEEEEECCCCCcccccccceEEEeehh
Confidence 57999999999999999999999977 5788999999999999998 766 567999999544 33222
Q ss_pred H-HhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc--cccH----HHHHHHHHhcCCCcE
Q psy549 116 E-LSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK--DVRR----EIAETIALYDWQCGF 188 (253)
Q Consensus 116 ~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~----~~~~~~~~~~~~~~~ 188 (253)
. ..+..+|.+++|.|+..+.+.++ ......+.. .+.++++|+||+|+.+. .... ++...+. .....++
T Consensus 254 t~~aI~~a~vvllviDa~~~~~~qD-~~ia~~i~~---~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~-~l~~a~i 328 (444)
T COG1160 254 TLKAIERADVVLLVIDATEGISEQD-LRIAGLIEE---AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLP-FLDFAPI 328 (444)
T ss_pred hHhHHhhcCEEEEEEECCCCchHHH-HHHHHHHHH---cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhc-cccCCeE
Confidence 2 26788999999999999876554 222233333 56899999999998764 1111 2222222 2456789
Q ss_pred EEeccCCCCCHHHHHHHHHHHHHH
Q psy549 189 VECSAKENYNIVQVFKELLAQAKV 212 (253)
Q Consensus 189 ~~~Sa~~~~~i~~l~~~l~~~~~~ 212 (253)
+.+||+++.++.++|+.+......
T Consensus 329 ~~iSA~~~~~i~~l~~~i~~~~~~ 352 (444)
T COG1160 329 VFISALTGQGLDKLFEAIKEIYEC 352 (444)
T ss_pred EEEEecCCCChHHHHHHHHHHHHH
Confidence 999999999999999998775544
No 195
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.80 E-value=3.1e-18 Score=152.94 Aligned_cols=156 Identities=17% Similarity=0.202 Sum_probs=104.1
Q ss_pred cceEEEECCCCCCHHHHHHHHHhCCCCCCccc-cceeeeeeeEEcC--C--------CcE-----EEEEEEeCCCCCCCh
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYDRFISRYKE-TVEELHRGEYELP--D--------GAQ-----LTLDILDTSGAYQFP 112 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~-t~~~~~~~~~~~~--~--------~~~-----~~~~l~D~~g~~~~~ 112 (253)
..-|+|+|++++|||||+++|.+..+...... ++.+.....+... . ... ..+.||||||++.|.
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~ 83 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT 83 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence 35799999999999999999998876433222 2221111111110 0 001 138899999999999
Q ss_pred hhHHHhcccCCEEEEEEECCCh---hhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCcc--------------ccHH-
Q psy549 113 AMRELSISTADAFVLVYAVDDA---STWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKD--------------VRRE- 174 (253)
Q Consensus 113 ~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--------------~~~~- 174 (253)
.++...++.+|++++|+|+++. .+++.+.. +.. .++|+++++||+|+.... ....
T Consensus 84 ~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~----l~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v 156 (590)
T TIGR00491 84 NLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQV 156 (590)
T ss_pred HHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHH----HHH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHH
Confidence 9999999999999999999974 44433221 111 468999999999986420 0000
Q ss_pred ----------HHHHHHH-------------hcCCCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy549 175 ----------IAETIAL-------------YDWQCGFVECSAKENYNIVQVFKELLAQAK 211 (253)
Q Consensus 175 ----------~~~~~~~-------------~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 211 (253)
....+.. .....+++++||++|.|+++++.++.....
T Consensus 157 ~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~ 216 (590)
T TIGR00491 157 QQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQ 216 (590)
T ss_pred HHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHH
Confidence 0111221 123578999999999999999998876543
No 196
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.79 E-value=7.6e-18 Score=125.38 Aligned_cols=159 Identities=19% Similarity=0.252 Sum_probs=124.7
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCCCC--------CC---ccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhh
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDRFI--------SR---YKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAM 114 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~--------~~---~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~ 114 (253)
.....||+|+|+.++||||+++++.....+ .. ...|+.....+.+.+.++ ..+.+++||||++|.-+
T Consensus 7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~--~~v~LfgtPGq~RF~fm 84 (187)
T COG2229 7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDED--TGVHLFGTPGQERFKFM 84 (187)
T ss_pred cccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCc--ceEEEecCCCcHHHHHH
Confidence 456789999999999999999999876531 11 123555555555655232 35789999999999999
Q ss_pred HHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHHhcCCCcEEEeccC
Q psy549 115 RELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIALYDWQCGFVECSAK 194 (253)
Q Consensus 115 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 194 (253)
|..+.+++.++|++.|.+.+..+ .....+..+.... .+|+++++||.|+.+....+.+.+.+......++++++++.
T Consensus 85 ~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~--~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~~~~~vi~~~a~ 161 (187)
T COG2229 85 WEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRN--PIPVVVAINKQDLFDALPPEKIREALKLELLSVPVIEIDAT 161 (187)
T ss_pred HHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhcc--CCCEEEEeeccccCCCCCHHHHHHHHHhccCCCceeeeecc
Confidence 99999999999999999999887 3333444333322 29999999999999988888888888874468999999999
Q ss_pred CCCCHHHHHHHHHHH
Q psy549 195 ENYNIVQVFKELLAQ 209 (253)
Q Consensus 195 ~~~~i~~l~~~l~~~ 209 (253)
++.+..+.++.+...
T Consensus 162 e~~~~~~~L~~ll~~ 176 (187)
T COG2229 162 EGEGARDQLDVLLLK 176 (187)
T ss_pred cchhHHHHHHHHHhh
Confidence 999999998877655
No 197
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.79 E-value=2.6e-18 Score=129.24 Aligned_cols=150 Identities=21% Similarity=0.209 Sum_probs=106.2
Q ss_pred EECCCCCCHHHHHHHHHhCCC--CCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChh-------hHHHhcccCCE
Q psy549 54 VMGGARVGKSSIISQFLYDRF--ISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPA-------MRELSISTADA 124 (253)
Q Consensus 54 iiG~~~~GKSsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-------~~~~~~~~~d~ 124 (253)
|+|++|+|||||++++.+... ......++...........+ ...+.+||+||...+.. ....++..+|+
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~ 78 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP--LGPVVLIDTPGIDEAGGLGREREELARRVLERADL 78 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC--CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCE
Confidence 589999999999999998654 23344444455544444421 35789999999877643 33347889999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHH---HHHHHHhcCCCcEEEeccCCCCCHHH
Q psy549 125 FVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREI---AETIALYDWQCGFVECSAKENYNIVQ 201 (253)
Q Consensus 125 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~---~~~~~~~~~~~~~~~~Sa~~~~~i~~ 201 (253)
+++|+|..+........ +..... ..+.|+++|+||+|+......... ...........+++++|++++.|+.+
T Consensus 79 il~v~~~~~~~~~~~~~-~~~~~~---~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~ 154 (163)
T cd00880 79 ILFVVDADLRADEEEEK-LLELLR---ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDE 154 (163)
T ss_pred EEEEEeCCCCCCHHHHH-HHHHHH---hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHH
Confidence 99999999987765543 233222 256899999999998765322222 12222335678999999999999999
Q ss_pred HHHHHHHH
Q psy549 202 VFKELLAQ 209 (253)
Q Consensus 202 l~~~l~~~ 209 (253)
+++++.+.
T Consensus 155 l~~~l~~~ 162 (163)
T cd00880 155 LREALIEA 162 (163)
T ss_pred HHHHHHhh
Confidence 99998765
No 198
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.79 E-value=6.5e-18 Score=151.94 Aligned_cols=158 Identities=17% Similarity=0.227 Sum_probs=112.2
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCC--CCC-----Ccccc------ce-eeeee--eEEc--CCCcEEEEEEEeCCCCC
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDR--FIS-----RYKET------VE-ELHRG--EYEL--PDGAQLTLDILDTSGAY 109 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~--~~~-----~~~~t------~~-~~~~~--~~~~--~~~~~~~~~l~D~~g~~ 109 (253)
...+|+|+|+.++|||||+++|+... +.. .+..+ .. ..... .+.+ .++..+.+.||||||+.
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~ 85 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV 85 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence 45699999999999999999998632 111 11000 00 11111 1222 25667899999999999
Q ss_pred CChhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHHhcCC---C
Q psy549 110 QFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIALYDWQ---C 186 (253)
Q Consensus 110 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~---~ 186 (253)
+|...+..+++.+|++|+|+|++++...+....|..... .++|+++|+||+|+.+... ....+.+.. ..+ .
T Consensus 86 dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~----~~lpiIvViNKiDl~~a~~-~~v~~ei~~-~lg~~~~ 159 (600)
T PRK05433 86 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NDLEIIPVLNKIDLPAADP-ERVKQEIED-VIGIDAS 159 (600)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEEEECCCCCcccH-HHHHHHHHH-HhCCCcc
Confidence 999999999999999999999998766666555544321 4689999999999865322 223334433 122 2
Q ss_pred cEEEeccCCCCCHHHHHHHHHHHHH
Q psy549 187 GFVECSAKENYNIVQVFKELLAQAK 211 (253)
Q Consensus 187 ~~~~~Sa~~~~~i~~l~~~l~~~~~ 211 (253)
.++++||++|.|+.+++++|.+.+.
T Consensus 160 ~vi~iSAktG~GI~~Ll~~I~~~lp 184 (600)
T PRK05433 160 DAVLVSAKTGIGIEEVLEAIVERIP 184 (600)
T ss_pred eEEEEecCCCCCHHHHHHHHHHhCc
Confidence 4899999999999999999998774
No 199
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.78 E-value=1.2e-17 Score=153.56 Aligned_cols=152 Identities=16% Similarity=0.236 Sum_probs=113.9
Q ss_pred cceEEEECCCCCCHHHHHHHHHhCCC-CCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhh----------HHH
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYDRF-ISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAM----------REL 117 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~----------~~~ 117 (253)
.++|+++|+||||||||+|++++... +.+.+.++.+.....+.. + ...+.+||+||...+... ...
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~-~--~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~ 79 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFST-T--DHQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEc-C--ceEEEEEECCCccccccccccccHHHHHHHH
Confidence 47899999999999999999998653 566677777666666655 3 357899999998876431 111
Q ss_pred h--cccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHHhcCCCcEEEeccCC
Q psy549 118 S--ISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIALYDWQCGFVECSAKE 195 (253)
Q Consensus 118 ~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 195 (253)
+ ...+|++++|+|+++.+.. ..+...+.. .++|+++|+||+|+.+........+.+.+ ..+++++++|+.+
T Consensus 80 ~l~~~~aD~vI~VvDat~ler~---l~l~~ql~e---~giPvIvVlNK~Dl~~~~~i~id~~~L~~-~LG~pVvpiSA~~ 152 (772)
T PRK09554 80 YILSGDADLLINVVDASNLERN---LYLTLQLLE---LGIPCIVALNMLDIAEKQNIRIDIDALSA-RLGCPVIPLVSTR 152 (772)
T ss_pred HHhccCCCEEEEEecCCcchhh---HHHHHHHHH---cCCCEEEEEEchhhhhccCcHHHHHHHHH-HhCCCEEEEEeec
Confidence 2 2479999999999875432 234344433 46899999999998755343455667766 5788999999999
Q ss_pred CCCHHHHHHHHHHHH
Q psy549 196 NYNIVQVFKELLAQA 210 (253)
Q Consensus 196 ~~~i~~l~~~l~~~~ 210 (253)
+.|++++++.+.+..
T Consensus 153 g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 153 GRGIEALKLAIDRHQ 167 (772)
T ss_pred CCCHHHHHHHHHHhh
Confidence 999999999987765
No 200
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.78 E-value=3.3e-17 Score=131.52 Aligned_cols=150 Identities=23% Similarity=0.272 Sum_probs=106.5
Q ss_pred eEEEECCCCCCHHHHHHHHHhCCC-CCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCCh-------hhHHHhcccC
Q psy549 51 RVVVMGGARVGKSSIISQFLYDRF-ISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFP-------AMRELSISTA 122 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-------~~~~~~~~~~ 122 (253)
+|+++|++|+|||||+++|.+... ...++.++.+...+.+.+ ++ ..+++||+||..+.. ......++++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~-~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~a 78 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEY-KG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTA 78 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEE-CC--eEEEEEECCCcccccccchhHHHHHHHhhccC
Confidence 789999999999999999998663 566677777777777777 44 578999999975432 1234578899
Q ss_pred CEEEEEEECCChhh-HHHHHHHHHH----------------------------------------HH-Hh----------
Q psy549 123 DAFVLVYAVDDAST-WDVVKDLREQ----------------------------------------IV-NK---------- 150 (253)
Q Consensus 123 d~~i~v~d~~~~~s-~~~~~~~~~~----------------------------------------~~-~~---------- 150 (253)
|++++|+|+++... ...+...++. +. .+
T Consensus 79 d~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~ 158 (233)
T cd01896 79 DLILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIR 158 (233)
T ss_pred CEEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEc
Confidence 99999999987542 2222111110 00 00
Q ss_pred --------------cCCCCCEEEEEecCCCCCccccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy549 151 --------------RGLMVPIVVVGNKCELEFKDVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQA 210 (253)
Q Consensus 151 --------------~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 210 (253)
....+|+++|+||+|+.. .+....++. ..+++++||+++.|++++|+.|++.+
T Consensus 159 ~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~----~~~~~~~~~---~~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 159 EDITVDDLIDVIEGNRVYIPCLYVYNKIDLIS----IEELDLLAR---QPNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred cCCCHHHHHHHHhCCceEeeEEEEEECccCCC----HHHHHHHhc---CCCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 012369999999999854 333334443 24589999999999999999999876
No 201
>PRK10218 GTP-binding protein; Provisional
Probab=99.76 E-value=5.6e-17 Score=145.37 Aligned_cols=159 Identities=16% Similarity=0.220 Sum_probs=111.3
Q ss_pred CcceEEEECCCCCCHHHHHHHHHh--CCCCCCcc------------ccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCCh
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLY--DRFISRYK------------ETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFP 112 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~--~~~~~~~~------------~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~ 112 (253)
...+|+|+|+.++|||||+++|+. +.+..... .+.. ........+ +...+.+.+|||||+.+|.
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i-~~~~~~inliDTPG~~df~ 82 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAI-KWNDYRINIVDTPGHADFG 82 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEE-ecCCEEEEEEECCCcchhH
Confidence 457999999999999999999996 33322110 1111 333333444 4456789999999999999
Q ss_pred hhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCcc---ccHHHHHHHHH-----hcC
Q psy549 113 AMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKD---VRREIAETIAL-----YDW 184 (253)
Q Consensus 113 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~-----~~~ 184 (253)
..+..+++.+|++|+|+|+.+....+. ..++..+.. .++|+++|+||+|+.... +..++...+.. ...
T Consensus 83 ~~v~~~l~~aDg~ILVVDa~~G~~~qt-~~~l~~a~~---~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~ 158 (607)
T PRK10218 83 GEVERVMSMVDSVLLVVDAFDGPMPQT-RFVTKKAFA---YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQL 158 (607)
T ss_pred HHHHHHHHhCCEEEEEEecccCccHHH-HHHHHHHHH---cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCcccccc
Confidence 999999999999999999988643333 333333333 458999999999987652 22333333322 123
Q ss_pred CCcEEEeccCCCC----------CHHHHHHHHHHHHH
Q psy549 185 QCGFVECSAKENY----------NIVQVFKELLAQAK 211 (253)
Q Consensus 185 ~~~~~~~Sa~~~~----------~i~~l~~~l~~~~~ 211 (253)
.+|++.+||++|. ++..+|+.|++.+.
T Consensus 159 ~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP 195 (607)
T PRK10218 159 DFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVP 195 (607)
T ss_pred CCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCC
Confidence 5789999999998 58888888877763
No 202
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.75 E-value=1.1e-16 Score=143.66 Aligned_cols=157 Identities=20% Similarity=0.250 Sum_probs=102.7
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCCCCCCcccc-ceeeeeeeEEcC-----CCcE-----E-----EEEEEeCCCCCC
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDRFISRYKET-VEELHRGEYELP-----DGAQ-----L-----TLDILDTSGAYQ 110 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t-~~~~~~~~~~~~-----~~~~-----~-----~~~l~D~~g~~~ 110 (253)
...+.|+|+|++++|||||+++|.+.......... +.+.....+... .+.. + .+.||||||++.
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence 34568999999999999999999876553322211 111100000110 0111 1 268999999999
Q ss_pred ChhhHHHhcccCCEEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc-c--c-------------
Q psy549 111 FPAMRELSISTADAFVLVYAVDD---ASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-D--V------------- 171 (253)
Q Consensus 111 ~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~--~------------- 171 (253)
|..++...+..+|++++|+|+++ +.++..+.. +.. .++|+++++||+|+... . .
T Consensus 84 f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~----~~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~ 156 (586)
T PRK04004 84 FTNLRKRGGALADIAILVVDINEGFQPQTIEAINI----LKR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQ 156 (586)
T ss_pred HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH----HHH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhH
Confidence 99998888899999999999997 444443322 111 46899999999998521 0 0
Q ss_pred --c-------HHHHHHHHHh-------------cCCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy549 172 --R-------REIAETIALY-------------DWQCGFVECSAKENYNIVQVFKELLAQA 210 (253)
Q Consensus 172 --~-------~~~~~~~~~~-------------~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 210 (253)
. .+....+... ...++++++||++|.|+.+++..+...+
T Consensus 157 ~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~ 217 (586)
T PRK04004 157 RVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA 217 (586)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence 0 0111122211 2347899999999999999998886544
No 203
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.74 E-value=2.2e-17 Score=120.30 Aligned_cols=136 Identities=19% Similarity=0.187 Sum_probs=92.8
Q ss_pred eEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCC----ChhhHHHhcccCCEEE
Q psy549 51 RVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQ----FPAMRELSISTADAFV 126 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----~~~~~~~~~~~~d~~i 126 (253)
||+++|+.|+|||||+++|.+...... .| ..+.+ .=.++||||..- |.........+||.++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~~~--KT------q~i~~------~~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ 68 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIRYK--KT------QAIEY------YDNTIDTPGEYIENPRFYHALIVTAQDADVVL 68 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCCcC--cc------ceeEe------cccEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence 899999999999999999998765211 11 11222 113589999543 2222233456899999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHHHH
Q psy549 127 LVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIALYDWQCGFVECSAKENYNIVQVFKEL 206 (253)
Q Consensus 127 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 206 (253)
+|.|++++.+... ..+... .+.|++-|+||+|+..+....+.++.+.+..+.-.+|++|+.+|.||++|.++|
T Consensus 69 ll~dat~~~~~~p-P~fa~~------f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~L 141 (143)
T PF10662_consen 69 LLQDATEPRSVFP-PGFASM------FNKPVIGVITKIDLPSDDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDYL 141 (143)
T ss_pred EEecCCCCCccCC-chhhcc------cCCCEEEEEECccCccchhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHHH
Confidence 9999998765332 111111 347999999999999544444444444443444567999999999999999887
Q ss_pred H
Q psy549 207 L 207 (253)
Q Consensus 207 ~ 207 (253)
-
T Consensus 142 ~ 142 (143)
T PF10662_consen 142 E 142 (143)
T ss_pred h
Confidence 3
No 204
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.74 E-value=4.9e-17 Score=145.84 Aligned_cols=157 Identities=16% Similarity=0.239 Sum_probs=110.5
Q ss_pred ceEEEECCCCCCHHHHHHHHHh--CCCCCCcc------------ccc-eeeeeeeEEcCCCcEEEEEEEeCCCCCCChhh
Q psy549 50 RRVVVMGGARVGKSSIISQFLY--DRFISRYK------------ETV-EELHRGEYELPDGAQLTLDILDTSGAYQFPAM 114 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~--~~~~~~~~------------~t~-~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~ 114 (253)
-+|+|+|+.++|||||+++|+. +.+..... ... .........+ +...+.+.||||||+.+|...
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v-~~~~~kinlIDTPGh~DF~~e 80 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAI-RYNGTKINIVDTPGHADFGGE 80 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEE-EECCEEEEEEECCCHHHHHHH
Confidence 3799999999999999999996 22321100 000 1222233333 334578999999999999999
Q ss_pred HHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCcc---ccHHHHHHHHH-----hcCCC
Q psy549 115 RELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKD---VRREIAETIAL-----YDWQC 186 (253)
Q Consensus 115 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~-----~~~~~ 186 (253)
+..+++.+|++++|+|+.+.. ......|+..+.. .++|+++|+||+|+.+.. +..+..+.+.. ....+
T Consensus 81 v~~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~---~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~ 156 (594)
T TIGR01394 81 VERVLGMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDF 156 (594)
T ss_pred HHHHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHH---CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccC
Confidence 999999999999999998753 2334455555544 458999999999987542 23333444432 12357
Q ss_pred cEEEeccCCCC----------CHHHHHHHHHHHHH
Q psy549 187 GFVECSAKENY----------NIVQVFKELLAQAK 211 (253)
Q Consensus 187 ~~~~~Sa~~~~----------~i~~l~~~l~~~~~ 211 (253)
|++++||++|. |+..+|+.+++.+.
T Consensus 157 pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP 191 (594)
T TIGR01394 157 PIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVP 191 (594)
T ss_pred cEEechhhcCcccccCcccccCHHHHHHHHHHhCC
Confidence 89999999996 79999999888774
No 205
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.74 E-value=3.7e-17 Score=141.51 Aligned_cols=162 Identities=16% Similarity=0.092 Sum_probs=102.1
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCCCCCCcc----ccceeeeee--------------eEEcC---CC------cEEE
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDRFISRYK----ETVEELHRG--------------EYELP---DG------AQLT 99 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~----~t~~~~~~~--------------~~~~~---~~------~~~~ 99 (253)
.+.++|+++|++++|||||+++|.+........ ..+...... .+... ++ ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 467899999999999999999997532211000 000000000 00000 11 1357
Q ss_pred EEEEeCCCCCCChhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccH---HHH
Q psy549 100 LDILDTSGAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRR---EIA 176 (253)
Q Consensus 100 ~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~---~~~ 176 (253)
+.+||+||+++|...+...+..+|++++|+|++++.........+..+... ...|+++|+||+|+.+..... +..
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~--gi~~iIVvvNK~Dl~~~~~~~~~~~~i 159 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEII--GIKNIVIVQNKIDLVSKEKALENYEEI 159 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHc--CCCeEEEEEEccccCCHHHHHHHHHHH
Confidence 899999999999888877888899999999999753111112222222221 124789999999987642221 122
Q ss_pred HHHHHhc--CCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy549 177 ETIALYD--WQCGFVECSAKENYNIVQVFKELLAQA 210 (253)
Q Consensus 177 ~~~~~~~--~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 210 (253)
..+.... ..++++++||++|.|+++++++|...+
T Consensus 160 ~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l 195 (406)
T TIGR03680 160 KEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFI 195 (406)
T ss_pred HhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence 2222211 257899999999999999999998765
No 206
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.74 E-value=4.8e-17 Score=141.92 Aligned_cols=154 Identities=24% Similarity=0.298 Sum_probs=98.1
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCC--CCCC------------------------------ccccceeeeeeeEEcC
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDR--FISR------------------------------YKETVEELHRGEYELP 93 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~--~~~~------------------------------~~~t~~~~~~~~~~~~ 93 (253)
.++.++|+++|++++|||||+++|+... +... ...++.+.....+..
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~- 81 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFET- 81 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEec-
Confidence 3567999999999999999999998432 1110 123333444444433
Q ss_pred CCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCcc---
Q psy549 94 DGAQLTLDILDTSGAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKD--- 170 (253)
Q Consensus 94 ~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--- 170 (253)
..+.+.||||||+++|.......+..+|++++|+|+++...+.....+...+.... ...|+++|+||+|+....
T Consensus 82 --~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~-~~~~iivviNK~Dl~~~~~~~ 158 (425)
T PRK12317 82 --DKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL-GINQLIVAINKMDAVNYDEKR 158 (425)
T ss_pred --CCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc-CCCeEEEEEEccccccccHHH
Confidence 34678999999999887666666789999999999987312212122211122221 124689999999987521
Q ss_pred ---ccHHHHHHHHHhcC---CCcEEEeccCCCCCHHHHH
Q psy549 171 ---VRREIAETIALYDW---QCGFVECSAKENYNIVQVF 203 (253)
Q Consensus 171 ---~~~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~l~ 203 (253)
...+..+.+..... .++++++||++|.|+.++.
T Consensus 159 ~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 159 YEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred HHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence 11122222222222 3679999999999998754
No 207
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.74 E-value=7.1e-17 Score=127.67 Aligned_cols=146 Identities=21% Similarity=0.143 Sum_probs=91.3
Q ss_pred eEEEECCCCCCHHHHHHHHHhCC--CCCC------------------------------ccccceeeeeeeEEcCCCcEE
Q psy549 51 RVVVMGGARVGKSSIISQFLYDR--FISR------------------------------YKETVEELHRGEYELPDGAQL 98 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~~~--~~~~------------------------------~~~t~~~~~~~~~~~~~~~~~ 98 (253)
+|+|+|++|+|||||+++|+... +... ...++.+.....+.. ++ .
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~-~~--~ 77 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFST-PK--R 77 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEec-CC--c
Confidence 68999999999999999998532 1100 012223333333333 33 4
Q ss_pred EEEEEeCCCCCCChhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccc--c---H
Q psy549 99 TLDILDTSGAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDV--R---R 173 (253)
Q Consensus 99 ~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~---~ 173 (253)
.+.||||||+.+|.......++.+|++|+|+|++++..-.. ...+..+... ...++++|+||+|+..... . .
T Consensus 78 ~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~-~~~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~i~ 154 (208)
T cd04166 78 KFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT-RRHSYILSLL--GIRHVVVAVNKMDLVDYSEEVFEEIV 154 (208)
T ss_pred eEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH-HHHHHHHHHc--CCCcEEEEEEchhcccCCHHHHHHHH
Confidence 67899999998887666677899999999999987642222 1222222221 1245788999999865311 1 1
Q ss_pred HHHHHHHHhcC--CCcEEEeccCCCCCHHHH
Q psy549 174 EIAETIALYDW--QCGFVECSAKENYNIVQV 202 (253)
Q Consensus 174 ~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~l 202 (253)
...+.+..... ..+++++||++|.|+.+.
T Consensus 155 ~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 155 ADYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 12222222111 356899999999998753
No 208
>KOG1423|consensus
Probab=99.73 E-value=5.7e-17 Score=129.64 Aligned_cols=163 Identities=21% Similarity=0.185 Sum_probs=116.1
Q ss_pred CCCCCcceEEEECCCCCCHHHHHHHHHhCCC--CCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCCh---------
Q psy549 44 GLQKDKRRVVVMGGARVGKSSIISQFLYDRF--ISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFP--------- 112 (253)
Q Consensus 44 ~~~~~~~~I~iiG~~~~GKSsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~--------- 112 (253)
+......+|++||.||+|||||.|.+++.+. ++....|++....+.++.++ ..+.|+||||.-.-.
T Consensus 67 ~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~e---TQlvf~DTPGlvs~~~~r~~~l~~ 143 (379)
T KOG1423|consen 67 EEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGE---TQLVFYDTPGLVSKKMHRRHHLMM 143 (379)
T ss_pred hhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCc---eEEEEecCCcccccchhhhHHHHH
Confidence 4457789999999999999999999999885 67788899888888888733 467799999943311
Q ss_pred ---hhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc--------------c---cc
Q psy549 113 ---AMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK--------------D---VR 172 (253)
Q Consensus 113 ---~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--------------~---~~ 172 (253)
..-...+.+||++++|+|+++....-. ...+..+..+ ..+|-++|.||.|.... + ..
T Consensus 144 s~lq~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~y--s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~k 220 (379)
T KOG1423|consen 144 SVLQNPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEY--SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLK 220 (379)
T ss_pred HhhhCHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHH--hcCCceeeccchhcchhhhHHhhhHHhccccccchhh
Confidence 112235778999999999997432211 2222233333 34899999999996543 1 12
Q ss_pred HHHHHHHHHhc----------C--CCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy549 173 REIAETIALYD----------W--QCGFVECSAKENYNIVQVFKELLAQAKV 212 (253)
Q Consensus 173 ~~~~~~~~~~~----------~--~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 212 (253)
.++.+.+.... | ...+|.+||++|.||+++-++|...+..
T Consensus 221 l~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~ 272 (379)
T KOG1423|consen 221 LEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPP 272 (379)
T ss_pred hhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCC
Confidence 34444444422 2 3358999999999999999999887643
No 209
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.73 E-value=5e-17 Score=141.81 Aligned_cols=154 Identities=21% Similarity=0.207 Sum_probs=99.7
Q ss_pred CCCCcceEEEECCCCCCHHHHHHHHHhC--CCCCC------------------------------ccccceeeeeeeEEc
Q psy549 45 LQKDKRRVVVMGGARVGKSSIISQFLYD--RFISR------------------------------YKETVEELHRGEYEL 92 (253)
Q Consensus 45 ~~~~~~~I~iiG~~~~GKSsLi~~l~~~--~~~~~------------------------------~~~t~~~~~~~~~~~ 92 (253)
..++.++|+++|+.++|||||+++|+.. .+... ....+.+.....+..
T Consensus 3 ~~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~ 82 (426)
T TIGR00483 3 KEKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFET 82 (426)
T ss_pred CCCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEcc
Confidence 3567799999999999999999999852 22100 011222333333333
Q ss_pred CCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEEEECCChhhHHHHHHHHH--HHHHhcCCCCCEEEEEecCCCCCc-
Q psy549 93 PDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLRE--QIVNKRGLMVPIVVVGNKCELEFK- 169 (253)
Q Consensus 93 ~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~--~~~~~~~~~~piilv~nK~Dl~~~- 169 (253)
..+.+.|||+||+++|.......+..+|++++|+|++++.++.. ..+.. .+.... ...|+++|+||+|+.+.
T Consensus 83 ---~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~-~~t~~~~~~~~~~-~~~~iIVviNK~Dl~~~~ 157 (426)
T TIGR00483 83 ---DKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQ-PQTREHAFLARTL-GINQLIVAINKMDSVNYD 157 (426)
T ss_pred ---CCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccC-CchHHHHHHHHHc-CCCeEEEEEEChhccCcc
Confidence 34688999999999887766667889999999999998854321 11111 122221 23578999999999642
Q ss_pred c----ccHHHHHHHHHhcC----CCcEEEeccCCCCCHHHHH
Q psy549 170 D----VRREIAETIALYDW----QCGFVECSAKENYNIVQVF 203 (253)
Q Consensus 170 ~----~~~~~~~~~~~~~~----~~~~~~~Sa~~~~~i~~l~ 203 (253)
. ......+.+.+... .++++++||++|.|+.+++
T Consensus 158 ~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~ 199 (426)
T TIGR00483 158 EEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS 199 (426)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence 1 11222233333121 3689999999999998744
No 210
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.73 E-value=1.1e-16 Score=128.79 Aligned_cols=113 Identities=19% Similarity=0.249 Sum_probs=79.8
Q ss_pred eEEEECCCCCCHHHHHHHHHhCCC--C-----C------Cccc---cce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChh
Q psy549 51 RVVVMGGARVGKSSIISQFLYDRF--I-----S------RYKE---TVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPA 113 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~~~~--~-----~------~~~~---t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~ 113 (253)
+|+++|+.|+|||||+++|+...- . . ++.. ... ........+ +...+++.+|||||+.+|..
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~-~~~~~~i~liDTPG~~~f~~ 79 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASF-QWEDTKVNLIDTPGHMDFIA 79 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEE-EECCEEEEEEeCCCccchHH
Confidence 589999999999999999986321 0 0 0000 000 111222222 33456889999999999999
Q ss_pred hHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCC
Q psy549 114 MRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEF 168 (253)
Q Consensus 114 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 168 (253)
.+..+++.+|++++|+|+.+..... ...++..+.. .++|+++|+||+|+..
T Consensus 80 ~~~~~l~~aD~~IlVvd~~~g~~~~-~~~~~~~~~~---~~~P~iivvNK~D~~~ 130 (237)
T cd04168 80 EVERSLSVLDGAILVISAVEGVQAQ-TRILWRLLRK---LNIPTIIFVNKIDRAG 130 (237)
T ss_pred HHHHHHHHhCeEEEEEeCCCCCCHH-HHHHHHHHHH---cCCCEEEEEECccccC
Confidence 8999999999999999999875533 3445554443 4689999999999874
No 211
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.73 E-value=1.8e-16 Score=126.29 Aligned_cols=154 Identities=15% Similarity=0.167 Sum_probs=97.2
Q ss_pred eEEEECCCCCCHHHHHHHHHhCCCCCCccccce---------------eeeeeeEEc---------------------CC
Q psy549 51 RVVVMGGARVGKSSIISQFLYDRFISRYKETVE---------------ELHRGEYEL---------------------PD 94 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~---------------~~~~~~~~~---------------------~~ 94 (253)
||+++|+.++|||||+++|..+.+......... ......+.+ ..
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 689999999999999999997655321110000 000000000 01
Q ss_pred CcEEEEEEEeCCCCCCChhhHHHhcc--cCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCcccc
Q psy549 95 GAQLTLDILDTSGAYQFPAMRELSIS--TADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVR 172 (253)
Q Consensus 95 ~~~~~~~l~D~~g~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~ 172 (253)
.....+.++|+||+++|.......+. .+|++++|+|+..+..-.. ..++..+.. .++|+++|+||+|+.+....
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d-~~~l~~l~~---~~ip~ivvvNK~D~~~~~~~ 156 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMT-KEHLGLALA---LNIPVFVVVTKIDLAPANIL 156 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHH-HHHHHHHHH---cCCCEEEEEECccccCHHHH
Confidence 11246789999999988665554443 6899999999987644222 333333333 45899999999998654222
Q ss_pred HHHHHHHHHh----------------------------cCCCcEEEeccCCCCCHHHHHHHHHH
Q psy549 173 REIAETIALY----------------------------DWQCGFVECSAKENYNIVQVFKELLA 208 (253)
Q Consensus 173 ~~~~~~~~~~----------------------------~~~~~~~~~Sa~~~~~i~~l~~~l~~ 208 (253)
......+... ...+|+|.+|+.+|.|++++...|..
T Consensus 157 ~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 157 QETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred HHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 2222322221 22458999999999999999987643
No 212
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.73 E-value=1.5e-16 Score=120.94 Aligned_cols=149 Identities=17% Similarity=0.172 Sum_probs=94.6
Q ss_pred eEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCC----------hhhHHHhc
Q psy549 51 RVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQF----------PAMRELSI 119 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~----------~~~~~~~~ 119 (253)
.|+++|++|+|||||++.+.+..+.....++.. ......+.. ++ .+.+||+||.... ......++
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~-~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~ 76 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNV-ND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYL 76 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEc-cC---eEEEecCCCccccccCHHHHHHHHHHHHHHH
Confidence 489999999999999999996554332222222 222223333 32 7889999995442 33333333
Q ss_pred c---cCCEEEEEEECCChhhHH--HHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHH----HHHhcCCCcEEE
Q psy549 120 S---TADAFVLVYAVDDASTWD--VVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAET----IALYDWQCGFVE 190 (253)
Q Consensus 120 ~---~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~----~~~~~~~~~~~~ 190 (253)
. ..+++++++|.....+.. .+..|+. . .+.|+++|+||+|+............ +.......++++
T Consensus 77 ~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~---~---~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 150 (170)
T cd01876 77 ENRENLKGVVLLIDSRHGPTEIDLEMLDWLE---E---LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIIL 150 (170)
T ss_pred HhChhhhEEEEEEEcCcCCCHhHHHHHHHHH---H---cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEE
Confidence 3 457889999987653222 2233332 2 24799999999998544222212222 221245678999
Q ss_pred eccCCCCCHHHHHHHHHHH
Q psy549 191 CSAKENYNIVQVFKELLAQ 209 (253)
Q Consensus 191 ~Sa~~~~~i~~l~~~l~~~ 209 (253)
+|++++.++.+++++|.+.
T Consensus 151 ~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 151 FSSLKGQGIDELRALIEKW 169 (170)
T ss_pred EecCCCCCHHHHHHHHHHh
Confidence 9999999999999999875
No 213
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.72 E-value=3.7e-16 Score=121.93 Aligned_cols=144 Identities=18% Similarity=0.169 Sum_probs=93.6
Q ss_pred cceEEEECCCCCCHHHHHHHHHhCCC--------CC---------CccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCC
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYDRF--------IS---------RYKETVEELHRGEYELPDGAQLTLDILDTSGAYQF 111 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~~~--------~~---------~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~ 111 (253)
.++|+++|+.++|||||+++|+.... .. .....+.+.. ...+ ......+.|+||||+..|
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~--~~~~-~~~~~~i~~iDtPG~~~~ 78 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTA--HVEY-ETANRHYAHVDCPGHADY 78 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEee--eeEe-cCCCeEEEEEECcCHHHH
Confidence 57999999999999999999985310 00 0111122222 2223 223456789999999888
Q ss_pred hhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCC-EEEEEecCCCCCc-c----ccHHHHHHHHHhcC-
Q psy549 112 PAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVP-IVVVGNKCELEFK-D----VRREIAETIALYDW- 184 (253)
Q Consensus 112 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~-~----~~~~~~~~~~~~~~- 184 (253)
.......+..+|++++|+|+..+..-.. ...+..+.. .++| +++|+||+|+... . ...++...+....+
T Consensus 79 ~~~~~~~~~~~D~~ilVvda~~g~~~~~-~~~~~~~~~---~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~ 154 (195)
T cd01884 79 IKNMITGAAQMDGAILVVSATDGPMPQT-REHLLLARQ---VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFD 154 (195)
T ss_pred HHHHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHH---cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhccc
Confidence 7777778889999999999987543222 223333333 3466 7889999998643 1 11223333333222
Q ss_pred --CCcEEEeccCCCCCH
Q psy549 185 --QCGFVECSAKENYNI 199 (253)
Q Consensus 185 --~~~~~~~Sa~~~~~i 199 (253)
.++++++||++|.++
T Consensus 155 ~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 155 GDNTPIVRGSALKALEG 171 (195)
T ss_pred ccCCeEEEeeCccccCC
Confidence 478999999999985
No 214
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.72 E-value=2.4e-16 Score=142.13 Aligned_cols=156 Identities=17% Similarity=0.181 Sum_probs=103.1
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCC---CCCCc-cccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEE
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDR---FISRY-KETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAF 125 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~---~~~~~-~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 125 (253)
+-|+++|+.++|||||+++|.+.. +..+. ...+.+.....+..+++. .+.|||+||+++|.......+..+|++
T Consensus 1 ~ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~--~i~~IDtPGhe~fi~~m~~g~~~~D~~ 78 (614)
T PRK10512 1 MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGR--VLGFIDVPGHEKFLSNMLAGVGGIDHA 78 (614)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCc--EEEEEECCCHHHHHHHHHHHhhcCCEE
Confidence 358999999999999999998633 32221 222333333334343443 478999999999877777778999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCC-EEEEEecCCCCCcccc----HHHHHHHHHhc-CCCcEEEeccCCCCCH
Q psy549 126 VLVYAVDDASTWDVVKDLREQIVNKRGLMVP-IVVVGNKCELEFKDVR----REIAETIALYD-WQCGFVECSAKENYNI 199 (253)
Q Consensus 126 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~----~~~~~~~~~~~-~~~~~~~~Sa~~~~~i 199 (253)
++|+|++++..-+..+ .+..+.. .++| +++|+||+|+.+.... .+..+.+.... ...+++++|+++|.|+
T Consensus 79 lLVVda~eg~~~qT~e-hl~il~~---lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI 154 (614)
T PRK10512 79 LLVVACDDGVMAQTRE-HLAILQL---TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGI 154 (614)
T ss_pred EEEEECCCCCcHHHHH-HHHHHHH---cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCC
Confidence 9999998743222212 1222222 3355 5799999998754221 22222222212 1378999999999999
Q ss_pred HHHHHHHHHHHH
Q psy549 200 VQVFKELLAQAK 211 (253)
Q Consensus 200 ~~l~~~l~~~~~ 211 (253)
++++++|.+...
T Consensus 155 ~~L~~~L~~~~~ 166 (614)
T PRK10512 155 DALREHLLQLPE 166 (614)
T ss_pred HHHHHHHHHhhc
Confidence 999999987653
No 215
>KOG0074|consensus
Probab=99.72 E-value=7.4e-17 Score=114.50 Aligned_cols=160 Identities=18% Similarity=0.252 Sum_probs=122.8
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEE
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFV 126 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 126 (253)
..++||+++|-.++|||||+..|.+.... ...+| .-+..+.+.+ ++ .+++.+||.+|+...+..|..+|.+.|++|
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~~-hltpT-~GFn~k~v~~-~g-~f~LnvwDiGGqr~IRpyWsNYyenvd~lI 90 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDPR-HLTPT-NGFNTKKVEY-DG-TFHLNVWDIGGQRGIRPYWSNYYENVDGLI 90 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCChh-hcccc-CCcceEEEee-cC-cEEEEEEecCCccccchhhhhhhhccceEE
Confidence 57899999999999999999998876642 22222 2344455555 43 478999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHH-hcCCCCCEEEEEecCCCCCccccHHHHHHHHHhc---CCCcEEEeccCCCCCHHHH
Q psy549 127 LVYAVDDASTWDVVKDLREQIVN-KRGLMVPIVVVGNKCELEFKDVRREIAETIALYD---WQCGFVECSAKENYNIVQV 202 (253)
Q Consensus 127 ~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~l 202 (253)
+|.|.+|..-|+.+...+.++.. ..-..+|+++..||.|+......++++..+.... ..+.+.+||+.++.|+.+-
T Consensus 91 yVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~eg~~dg 170 (185)
T KOG0074|consen 91 YVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLEGSTDG 170 (185)
T ss_pred EEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccccCccCc
Confidence 99999998888877665555554 2224589999999999988766666666554322 2345678999999999999
Q ss_pred HHHHHHHH
Q psy549 203 FKELLAQA 210 (253)
Q Consensus 203 ~~~l~~~~ 210 (253)
.+|+....
T Consensus 171 ~~wv~sn~ 178 (185)
T KOG0074|consen 171 SDWVQSNP 178 (185)
T ss_pred chhhhcCC
Confidence 88887643
No 216
>KOG1707|consensus
Probab=99.72 E-value=8.3e-17 Score=138.53 Aligned_cols=178 Identities=25% Similarity=0.305 Sum_probs=127.6
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEE
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAF 125 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 125 (253)
....+||+++|+.|+||||||-.++.++|+...+..........-..++ .+...++|++..+.-+.....-++.||++
T Consensus 6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe--~vpt~ivD~ss~~~~~~~l~~EirkA~vi 83 (625)
T KOG1707|consen 6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPE--NVPTSIVDTSSDSDDRLCLRKEIRKADVI 83 (625)
T ss_pred CccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcC--cCceEEEecccccchhHHHHHHHhhcCEE
Confidence 4567999999999999999999999999977665544322222111223 34578999987666666666778999999
Q ss_pred EEEEECCChhhHHHHHH-HHHHHHHhcC--CCCCEEEEEecCCCCCcccc--H-HHHHHHHHhcCCCcEEEeccCCCCCH
Q psy549 126 VLVYAVDDASTWDVVKD-LREQIVNKRG--LMVPIVVVGNKCELEFKDVR--R-EIAETIALYDWQCGFVECSAKENYNI 199 (253)
Q Consensus 126 i~v~d~~~~~s~~~~~~-~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~--~-~~~~~~~~~~~~~~~~~~Sa~~~~~i 199 (253)
.+||+++++.+.+.+.. |+..+.+..+ .++|||+|+||+|....... + .....+.........++|||++-.++
T Consensus 84 ~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n~ 163 (625)
T KOG1707|consen 84 CLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLANV 163 (625)
T ss_pred EEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhhh
Confidence 99999999999998655 6666655432 56999999999998765222 1 23333333233345689999999999
Q ss_pred HHHHHHHHHHHHHhcccChhhccccccC
Q psy549 200 VQVFKELLAQAKVQYNLSPAVRRRRQSL 227 (253)
Q Consensus 200 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 227 (253)
.|+|...-+.+ .++..|++.+..+.+
T Consensus 164 ~e~fYyaqKaV--ihPt~PLyda~~qel 189 (625)
T KOG1707|consen 164 SELFYYAQKAV--IHPTSPLYDAEEQEL 189 (625)
T ss_pred Hhhhhhhhhee--eccCccccccccccc
Confidence 99997765555 566777777665544
No 217
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.71 E-value=4.4e-16 Score=126.13 Aligned_cols=160 Identities=22% Similarity=0.256 Sum_probs=119.0
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCCC-CCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCC-Ch--------hhH
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDRF-ISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQ-FP--------AMR 115 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-~~--------~~~ 115 (253)
+.+...|+|.|.||||||||++.+.+.+. +..|+.||...+.+.+.. ++ .++|++||||.-+ -- ...
T Consensus 165 dp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~-~~--~R~QvIDTPGlLDRPl~ErN~IE~qAi 241 (346)
T COG1084 165 DPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFER-GY--LRIQVIDTPGLLDRPLEERNEIERQAI 241 (346)
T ss_pred CCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeec-CC--ceEEEecCCcccCCChHHhcHHHHHHH
Confidence 45778999999999999999999999876 789999999999888877 43 5789999999432 11 111
Q ss_pred HHhcccCCEEEEEEECCC--hhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHHhcCCCcEEEecc
Q psy549 116 ELSISTADAFVLVYAVDD--ASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIALYDWQCGFVECSA 193 (253)
Q Consensus 116 ~~~~~~~d~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 193 (253)
...-.-+++++|+||++. .-+.+....++..+..... .|+++|+||+|+.+.....+....+.. ..+.....+++
T Consensus 242 ~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~--~p~v~V~nK~D~~~~e~~~~~~~~~~~-~~~~~~~~~~~ 318 (346)
T COG1084 242 LALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK--APIVVVINKIDIADEEKLEEIEASVLE-EGGEEPLKISA 318 (346)
T ss_pred HHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC--CCeEEEEecccccchhHHHHHHHHHHh-hccccccceee
Confidence 123345799999999975 3456666777777777643 899999999998865444444444444 45555678888
Q ss_pred CCCCCHHHHHHHHHHHHH
Q psy549 194 KENYNIVQVFKELLAQAK 211 (253)
Q Consensus 194 ~~~~~i~~l~~~l~~~~~ 211 (253)
..+.+++.+-..+...+.
T Consensus 319 ~~~~~~d~~~~~v~~~a~ 336 (346)
T COG1084 319 TKGCGLDKLREEVRKTAL 336 (346)
T ss_pred eehhhHHHHHHHHHHHhh
Confidence 888888887777766643
No 218
>KOG1489|consensus
Probab=99.71 E-value=2.2e-16 Score=126.91 Aligned_cols=158 Identities=19% Similarity=0.237 Sum_probs=119.4
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCCC-CCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhH----HH---h
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDRF-ISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMR----EL---S 118 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~----~~---~ 118 (253)
+....|.+||-||+|||||++++...+. +..|..||..+..+.+.+.|.. .+++-|.||..+-.++. .. -
T Consensus 194 KsiadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~--q~tVADiPGiI~GAh~nkGlG~~FLrH 271 (366)
T KOG1489|consen 194 KSIADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFS--QITVADIPGIIEGAHMNKGLGYKFLRH 271 (366)
T ss_pred eeecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccc--eeEeccCccccccccccCcccHHHHHH
Confidence 4556789999999999999999999775 7899999998888888884443 48899999966543322 22 3
Q ss_pred cccCCEEEEEEECCCh---hhHHHHHHHHHHHHHhc--CCCCCEEEEEecCCCCCccccHHHHHHHHHhcCCCcEEEecc
Q psy549 119 ISTADAFVLVYAVDDA---STWDVVKDLREQIVNKR--GLMVPIVVVGNKCELEFKDVRREIAETIALYDWQCGFVECSA 193 (253)
Q Consensus 119 ~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 193 (253)
++.++..+||.|++.. ..++.+..++.++..+. -.+.|.++|+||+|+++.+ ......+.+...+..++++||
T Consensus 272 iER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae--~~~l~~L~~~lq~~~V~pvsA 349 (366)
T KOG1489|consen 272 IERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE--KNLLSSLAKRLQNPHVVPVSA 349 (366)
T ss_pred HHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH--HHHHHHHHHHcCCCcEEEeee
Confidence 5679999999999988 66666666655555532 2568999999999986322 222455666444446999999
Q ss_pred CCCCCHHHHHHHHHH
Q psy549 194 KENYNIVQVFKELLA 208 (253)
Q Consensus 194 ~~~~~i~~l~~~l~~ 208 (253)
+.++++.++++.|..
T Consensus 350 ~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 350 KSGEGLEELLNGLRE 364 (366)
T ss_pred ccccchHHHHHHHhh
Confidence 999999999988754
No 219
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.71 E-value=2.9e-16 Score=124.69 Aligned_cols=113 Identities=24% Similarity=0.325 Sum_probs=79.6
Q ss_pred eEEEECCCCCCHHHHHHHHHhCCCCCC-----------ccccce-------ee--eeeeEEcC--CCcEEEEEEEeCCCC
Q psy549 51 RVVVMGGARVGKSSIISQFLYDRFISR-----------YKETVE-------EL--HRGEYELP--DGAQLTLDILDTSGA 108 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~~~~~~~-----------~~~t~~-------~~--~~~~~~~~--~~~~~~~~l~D~~g~ 108 (253)
+|+|+|+.++|||||+++|+....... +..+.+ .. ....+.+. ++..+.+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 689999999999999999997543211 001100 11 11111111 355688999999999
Q ss_pred CCChhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCC
Q psy549 109 YQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELE 167 (253)
Q Consensus 109 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 167 (253)
.+|.......+..+|++++|+|+.+..++.. ..++..... .++|+++|+||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~---~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL---EGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECcccC
Confidence 9998888889999999999999988766543 334443332 348999999999975
No 220
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.71 E-value=2.7e-16 Score=136.08 Aligned_cols=162 Identities=17% Similarity=0.137 Sum_probs=100.5
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCCCCCCc----cccceeee------------------eeeEEcCC-C----cEE
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDRFISRY----KETVEELH------------------RGEYELPD-G----AQL 98 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~----~~t~~~~~------------------~~~~~~~~-~----~~~ 98 (253)
..+.++|+++|+.++|||||+.+|.+....... ...+.... .......+ + ...
T Consensus 6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (411)
T PRK04000 6 VQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLR 85 (411)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccccc
Confidence 457799999999999999999998653111110 01111100 00000100 0 125
Q ss_pred EEEEEeCCCCCCChhhHHHhcccCCEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccH---H
Q psy549 99 TLDILDTSGAYQFPAMRELSISTADAFVLVYAVDDAS-TWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRR---E 174 (253)
Q Consensus 99 ~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~---~ 174 (253)
.+.|||+||+++|..........+|++++|+|+.++. .......+ ..+... ...|+++|+||+|+.+..... +
T Consensus 86 ~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l-~~l~~~--~i~~iiVVlNK~Dl~~~~~~~~~~~ 162 (411)
T PRK04000 86 RVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHL-MALDII--GIKNIVIVQNKIDLVSKERALENYE 162 (411)
T ss_pred EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHH-HHHHHc--CCCcEEEEEEeeccccchhHHHHHH
Confidence 7899999999888766666667789999999999653 22222222 222221 124789999999987642221 2
Q ss_pred HHHHHHHh--cCCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy549 175 IAETIALY--DWQCGFVECSAKENYNIVQVFKELLAQA 210 (253)
Q Consensus 175 ~~~~~~~~--~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 210 (253)
....+... ....+++++||++|.|+++++++|...+
T Consensus 163 ~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l 200 (411)
T PRK04000 163 QIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEI 200 (411)
T ss_pred HHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence 22222221 1257899999999999999999998765
No 221
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.71 E-value=2.8e-16 Score=138.51 Aligned_cols=155 Identities=18% Similarity=0.248 Sum_probs=119.4
Q ss_pred cceEEEECCCCCCHHHHHHHHHhCC-CCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChh-------hHHHhc-
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYDR-FISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPA-------MRELSI- 119 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-------~~~~~~- 119 (253)
..+|+++|+||||||||.|++++.+ .+.+.+..|.+...+.+.+ .+. .++++|.||...... .+....
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~-~~~--~i~ivDLPG~YSL~~~S~DE~Var~~ll~ 79 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKY-KGH--EIEIVDLPGTYSLTAYSEDEKVARDFLLE 79 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEe-cCc--eEEEEeCCCcCCCCCCCchHHHHHHHHhc
Confidence 4679999999999999999999966 5889999999999999998 544 478999999554321 112223
Q ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHHhcCCCcEEEeccCCCCCH
Q psy549 120 STADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIALYDWQCGFVECSAKENYNI 199 (253)
Q Consensus 120 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 199 (253)
...|+++-|.|+++-+ +-+....+....++|++++.|++|.....-..-..+.+.+ ..++|+++++|++|.|+
T Consensus 80 ~~~D~ivnVvDAtnLe------RnLyltlQLlE~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~-~LGvPVv~tvA~~g~G~ 152 (653)
T COG0370 80 GKPDLIVNVVDATNLE------RNLYLTLQLLELGIPMILALNMIDEAKKRGIRIDIEKLSK-LLGVPVVPTVAKRGEGL 152 (653)
T ss_pred CCCCEEEEEcccchHH------HHHHHHHHHHHcCCCeEEEeccHhhHHhcCCcccHHHHHH-HhCCCEEEEEeecCCCH
Confidence 3579999999998753 2222222223366899999999998887655666777777 78999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy549 200 VQVFKELLAQAKVQ 213 (253)
Q Consensus 200 ~~l~~~l~~~~~~~ 213 (253)
+++.+.+.+....+
T Consensus 153 ~~l~~~i~~~~~~~ 166 (653)
T COG0370 153 EELKRAIIELAESK 166 (653)
T ss_pred HHHHHHHHHhcccc
Confidence 99999988755443
No 222
>KOG0072|consensus
Probab=99.69 E-value=9.1e-17 Score=114.40 Aligned_cols=160 Identities=16% Similarity=0.182 Sum_probs=117.1
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEE
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVL 127 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 127 (253)
.+.+|.++|-.|+|||+++.++.-.+.+...+... +....+.+ +..++++||..|+-..+..|.-+|.+.|++|+
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevvttkPtig--fnve~v~y---KNLk~~vwdLggqtSirPyWRcYy~dt~avIy 91 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVVTTKPTIG--FNVETVPY---KNLKFQVWDLGGQTSIRPYWRCYYADTDAVIY 91 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCcccccCCCCC--cCcccccc---ccccceeeEccCcccccHHHHHHhcccceEEE
Confidence 67899999999999999999888777655443322 22233333 44789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHH-HHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHH---hcCCCcEEEeccCCCCCHHHHH
Q psy549 128 VYAVDDASTWDVVKD-LREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIAL---YDWQCGFVECSAKENYNIVQVF 203 (253)
Q Consensus 128 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~~~i~~l~ 203 (253)
|+|.+|..-..-... ++..+....-...-+++++||.|........+....+.. +...+.+|++||.+|.|++..+
T Consensus 92 VVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~~ 171 (182)
T KOG0072|consen 92 VVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPAM 171 (182)
T ss_pred EEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCcHHH
Confidence 999998764433222 333333323234677888999998876444444433322 1334778999999999999999
Q ss_pred HHHHHHHHH
Q psy549 204 KELLAQAKV 212 (253)
Q Consensus 204 ~~l~~~~~~ 212 (253)
+|+.+.+..
T Consensus 172 DWL~~~l~~ 180 (182)
T KOG0072|consen 172 DWLQRPLKS 180 (182)
T ss_pred HHHHHHHhc
Confidence 999988754
No 223
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.68 E-value=3.2e-16 Score=124.90 Aligned_cols=144 Identities=20% Similarity=0.215 Sum_probs=90.9
Q ss_pred eEEEECCCCCCHHHHHHHHHhCC--CC------------------------------CCccccceeeeeeeEEcCCCcEE
Q psy549 51 RVVVMGGARVGKSSIISQFLYDR--FI------------------------------SRYKETVEELHRGEYELPDGAQL 98 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~~~--~~------------------------------~~~~~t~~~~~~~~~~~~~~~~~ 98 (253)
+|+++|+.++|||||+.+|+... +. .....++.+.....+.+ ...
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~---~~~ 77 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFET---EKY 77 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEee---CCe
Confidence 58999999999999999997321 10 00111222333333434 346
Q ss_pred EEEEEeCCCCCCChhhHHHhcccCCEEEEEEECCChh-------hHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc--
Q psy549 99 TLDILDTSGAYQFPAMRELSISTADAFVLVYAVDDAS-------TWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-- 169 (253)
Q Consensus 99 ~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-------s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-- 169 (253)
.+.+||+||+..|.......+..+|++|+|+|+++.. ..+....+ ...... ...|+++|+||+|+...
T Consensus 78 ~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~iiivvNK~Dl~~~~~ 154 (219)
T cd01883 78 RFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHA-LLARTL--GVKQLIVAVNKMDDVTVNW 154 (219)
T ss_pred EEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHH-HHHHHc--CCCeEEEEEEccccccccc
Confidence 7899999999877776666778899999999999852 11112222 212111 23689999999999732
Q ss_pred --cccHHHHH----HHHHhcC---CCcEEEeccCCCCCHH
Q psy549 170 --DVRREIAE----TIALYDW---QCGFVECSAKENYNIV 200 (253)
Q Consensus 170 --~~~~~~~~----~~~~~~~---~~~~~~~Sa~~~~~i~ 200 (253)
.......+ .+..... .++++++||++|.|+.
T Consensus 155 ~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 155 SEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred cHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 11112222 2332122 3789999999999987
No 224
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.68 E-value=3.1e-15 Score=124.62 Aligned_cols=158 Identities=19% Similarity=0.232 Sum_probs=104.1
Q ss_pred EEEECCCCCCHHHHHHHHHhCCC-CCCccccceeeeeeeEEcC--------------------CC-cEEEEEEEeCCCC-
Q psy549 52 VVVMGGARVGKSSIISQFLYDRF-ISRYKETVEELHRGEYELP--------------------DG-AQLTLDILDTSGA- 108 (253)
Q Consensus 52 I~iiG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~--------------------~~-~~~~~~l~D~~g~- 108 (253)
|+|+|.|+||||||+|+|++... +.+++.++.+...+...+. ++ ..+.+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 68999999999999999998774 5667777655554443321 22 4478999999997
Q ss_pred ---CCChhhHHH---hcccCCEEEEEEECCCh-------------hhHHH-------HHHH--------HHHHH------
Q psy549 109 ---YQFPAMREL---SISTADAFVLVYAVDDA-------------STWDV-------VKDL--------REQIV------ 148 (253)
Q Consensus 109 ---~~~~~~~~~---~~~~~d~~i~v~d~~~~-------------~s~~~-------~~~~--------~~~~~------ 148 (253)
+++..+... .++++|++++|+|+... ....+ +..| +..+.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~~ 160 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADAE 160 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 445555555 48999999999999731 01111 1111 00000
Q ss_pred --------------------------Hh----------------------cCCCCCEEEEEecCCCCCccccHHHHHHHH
Q psy549 149 --------------------------NK----------------------RGLMVPIVVVGNKCELEFKDVRREIAETIA 180 (253)
Q Consensus 149 --------------------------~~----------------------~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 180 (253)
.. ....+|+++|+||+|+..... ..+.+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~~~---~~~~l~ 237 (318)
T cd01899 161 KTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAEN---NISKLR 237 (318)
T ss_pred CccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccChHH---HHHHHH
Confidence 00 012469999999999754321 222333
Q ss_pred HhcCCCcEEEeccCCCCCHHHHHH-HHHHHHHH
Q psy549 181 LYDWQCGFVECSAKENYNIVQVFK-ELLAQAKV 212 (253)
Q Consensus 181 ~~~~~~~~~~~Sa~~~~~i~~l~~-~l~~~~~~ 212 (253)
.......++.+||+.+.++.++.+ .+++.+..
T Consensus 238 ~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe 270 (318)
T cd01899 238 LKYPDEIVVPTSAEAELALRRAAKQGLIKYDPG 270 (318)
T ss_pred hhCCCCeEEEEeCcccccHHHHHHhhHHHhCCC
Confidence 323456799999999999999997 58887743
No 225
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.68 E-value=1.2e-15 Score=123.28 Aligned_cols=172 Identities=20% Similarity=0.227 Sum_probs=125.6
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCCC-CCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChh-------hHHH
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDRF-ISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPA-------MREL 117 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-------~~~~ 117 (253)
......++++|.|++|||||++.|++... +.+|+.||.....+.+.+ +| ..+|+.|+||.-+-.+ ....
T Consensus 60 KsGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y-~g--a~IQild~Pgii~gas~g~grG~~vls 136 (365)
T COG1163 60 KSGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEY-KG--AQIQLLDLPGIIEGASSGRGRGRQVLS 136 (365)
T ss_pred ccCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEee-cC--ceEEEEcCcccccCcccCCCCcceeee
Confidence 45678999999999999999999999775 789999999999999999 55 5789999998554322 2334
Q ss_pred hcccCCEEEEEEECCChhh-HHHHHHHHHHHHHh----------------------------------------------
Q psy549 118 SISTADAFVLVYAVDDAST-WDVVKDLREQIVNK---------------------------------------------- 150 (253)
Q Consensus 118 ~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~---------------------------------------------- 150 (253)
.+++||.+++|.|+..... .+.+...++...-.
T Consensus 137 v~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA 216 (365)
T COG1163 137 VARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNA 216 (365)
T ss_pred eeccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccc
Confidence 7899999999999986543 22222221111100
Q ss_pred -------------------cCCCCCEEEEEecCCCCCccccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy549 151 -------------------RGLMVPIVVVGNKCELEFKDVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQAK 211 (253)
Q Consensus 151 -------------------~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 211 (253)
..-.+|.++|+||+|+.. .+....+.+. . .++.+|++.+.|++++.+.|++.+.
T Consensus 217 ~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~----~e~~~~l~~~-~--~~v~isa~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 217 DVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPG----LEELERLARK-P--NSVPISAKKGINLDELKERIWDVLG 289 (365)
T ss_pred eEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccC----HHHHHHHHhc-c--ceEEEecccCCCHHHHHHHHHHhhC
Confidence 111379999999999765 4445555542 2 7899999999999999999999884
Q ss_pred HhcccChhhccccccCCCCc
Q psy549 212 VQYNLSPAVRRRRQSLPNYI 231 (253)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~ 231 (253)
. -..+.+++..-|++.
T Consensus 290 l----iRVYtK~~g~~pd~~ 305 (365)
T COG1163 290 L----IRVYTKPPGEEPDFD 305 (365)
T ss_pred e----EEEEecCCCCCCCCC
Confidence 3 345555655556553
No 226
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.67 E-value=1.9e-15 Score=119.95 Aligned_cols=157 Identities=18% Similarity=0.242 Sum_probs=100.3
Q ss_pred eEEEECCCCCCHHHHHHHHHhCCCCCCcc--ccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhh-----HHHhcccCC
Q psy549 51 RVVVMGGARVGKSSIISQFLYDRFISRYK--ETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAM-----RELSISTAD 123 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~-----~~~~~~~~d 123 (253)
||+++|+.++||||+.+.+.++..+.+.. ..|.+.....+...+ .+.+++||+||+..+... ....+++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~--~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~ 78 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLS--FLPLNIWDCPGQDDFMENYFNSQREEIFSNVG 78 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTT--SCEEEEEEE-SSCSTTHTTHTCCHHHHHCTES
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCC--CcEEEEEEcCCccccccccccccHHHHHhccC
Confidence 79999999999999999999877653332 333344455554422 358899999999877554 466889999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHH--hcCCCCCEEEEEecCCCCCcc--------ccHHHHHHHHHhcC-CCcEEEec
Q psy549 124 AFVLVYAVDDASTWDVVKDLREQIVN--KRGLMVPIVVVGNKCELEFKD--------VRREIAETIALYDW-QCGFVECS 192 (253)
Q Consensus 124 ~~i~v~d~~~~~s~~~~~~~~~~~~~--~~~~~~piilv~nK~Dl~~~~--------~~~~~~~~~~~~~~-~~~~~~~S 192 (253)
++|+|+|+.+.+-.+.+..+...+.. ...+++.+.++++|+|+.... ..+.+.+.+..... .+.++.||
T Consensus 79 ~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TS 158 (232)
T PF04670_consen 79 VLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTS 158 (232)
T ss_dssp EEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-
T ss_pred EEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEecc
Confidence 99999999855544555554444433 345889999999999987652 22222333332121 27789999
Q ss_pred cCCCCCHHHHHHHHHHHH
Q psy549 193 AKENYNIVQVFKELLAQA 210 (253)
Q Consensus 193 a~~~~~i~~l~~~l~~~~ 210 (253)
..+ ..+.+.|..++..+
T Consensus 159 I~D-~Sly~A~S~Ivq~L 175 (232)
T PF04670_consen 159 IWD-ESLYEAWSKIVQKL 175 (232)
T ss_dssp TTS-THHHHHHHHHHHTT
T ss_pred CcC-cHHHHHHHHHHHHH
Confidence 987 47888888877755
No 227
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.67 E-value=4.9e-15 Score=112.85 Aligned_cols=157 Identities=20% Similarity=0.227 Sum_probs=102.5
Q ss_pred CCCCcceEEEECCCCCCHHHHHHHHHhCCC---CCCccccceeeeeeeEEcCCCcEEEEEEEeCCCC----------CCC
Q psy549 45 LQKDKRRVVVMGGARVGKSSIISQFLYDRF---ISRYKETVEELHRGEYELPDGAQLTLDILDTSGA----------YQF 111 (253)
Q Consensus 45 ~~~~~~~I~iiG~~~~GKSsLi~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~----------~~~ 111 (253)
+......|+|+|.+|||||||||+|++++- ++..++.|. ...-+.+ ++. +.++|.||- +..
T Consensus 20 P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq--~iNff~~-~~~---~~lVDlPGYGyAkv~k~~~e~w 93 (200)
T COG0218 20 PEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQ--LINFFEV-DDE---LRLVDLPGYGYAKVPKEVKEKW 93 (200)
T ss_pred CCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccc--eeEEEEe-cCc---EEEEeCCCcccccCCHHHHHHH
Confidence 445778999999999999999999999763 333333332 2223333 332 679999992 223
Q ss_pred hhhHHHhccc---CCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCcccc----HHHHHHHHHhcC
Q psy549 112 PAMRELSIST---ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVR----REIAETIALYDW 184 (253)
Q Consensus 112 ~~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~----~~~~~~~~~~~~ 184 (253)
..+...|++. -.++++++|+..+....+. ++++.+.. .++|+++|+||+|....... ....+.+.. ..
T Consensus 94 ~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~~---~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~-~~ 168 (200)
T COG0218 94 KKLIEEYLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLLE---LGIPVIVVLTKADKLKKSERNKQLNKVAEELKK-PP 168 (200)
T ss_pred HHHHHHHHhhchhheEEEEEEECCCCCcHHHH-HHHHHHHH---cCCCeEEEEEccccCChhHHHHHHHHHHHHhcC-CC
Confidence 3444445543 4678888888876554332 23333333 66999999999998775222 223333333 22
Q ss_pred CCc--EEEeccCCCCCHHHHHHHHHHHHHH
Q psy549 185 QCG--FVECSAKENYNIVQVFKELLAQAKV 212 (253)
Q Consensus 185 ~~~--~~~~Sa~~~~~i~~l~~~l~~~~~~ 212 (253)
... ++.+|+..+.|++++...|.+.+..
T Consensus 169 ~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 169 PDDQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred CccceEEEEecccccCHHHHHHHHHHHhhc
Confidence 222 7888999999999999998887643
No 228
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.66 E-value=4.1e-15 Score=116.64 Aligned_cols=156 Identities=16% Similarity=0.140 Sum_probs=94.1
Q ss_pred cceEEEECCCCCCHHHHHHHHHhCCCCCCccccce----eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHH-----hc
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE----ELHRGEYELPDGAQLTLDILDTSGAYQFPAMREL-----SI 119 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~----~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~-----~~ 119 (253)
+++|+|+|++|+|||||+|.|++.........++. ......+.. .....+.+||+||..+....... .+
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~--~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~ 78 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPH--PKFPNVTLWDLPGIGSTAFPPDDYLEEMKF 78 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeec--CCCCCceEEeCCCCCcccCCHHHHHHHhCc
Confidence 37899999999999999999998554221111111 001111111 11236799999997653222222 35
Q ss_pred ccCCEEEEEEECCChhhHHHH-HHHHHHHHHhcCCCCCEEEEEecCCCCCc-------------cccHHHHHHHHH----
Q psy549 120 STADAFVLVYAVDDASTWDVV-KDLREQIVNKRGLMVPIVVVGNKCELEFK-------------DVRREIAETIAL---- 181 (253)
Q Consensus 120 ~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~-------------~~~~~~~~~~~~---- 181 (253)
..+|.+++|.+. + |... ..|+..+... +.|+++|+||+|+... +..++..+.+..
T Consensus 79 ~~~d~~l~v~~~--~--~~~~d~~~~~~l~~~---~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~ 151 (197)
T cd04104 79 SEYDFFIIISST--R--FSSNDVKLAKAIQCM---GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQE 151 (197)
T ss_pred cCcCEEEEEeCC--C--CCHHHHHHHHHHHHh---CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHH
Confidence 678888887432 2 2332 3344544442 4799999999998432 111122222221
Q ss_pred hc-CCCcEEEeccC--CCCCHHHHHHHHHHHHHHh
Q psy549 182 YD-WQCGFVECSAK--ENYNIVQVFKELLAQAKVQ 213 (253)
Q Consensus 182 ~~-~~~~~~~~Sa~--~~~~i~~l~~~l~~~~~~~ 213 (253)
.. ...++|.+|+. .+.++..+.+.|...+.+.
T Consensus 152 ~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~ 186 (197)
T cd04104 152 AGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAH 186 (197)
T ss_pred cCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHH
Confidence 11 23478999998 5789999999999988664
No 229
>PRK12736 elongation factor Tu; Reviewed
Probab=99.66 E-value=3.4e-15 Score=128.84 Aligned_cols=158 Identities=16% Similarity=0.168 Sum_probs=99.8
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCCCC------------C-----CccccceeeeeeeEEcCCCcEEEEEEEeCCCC
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDRFI------------S-----RYKETVEELHRGEYELPDGAQLTLDILDTSGA 108 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~------------~-----~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~ 108 (253)
.++.++|+++|+.++|||||+++|++.... . .....+.+. ....+ +.....+.|+||||+
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~--~~~~~-~~~~~~i~~iDtPGh 85 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINT--AHVEY-ETEKRHYAHVDCPGH 85 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEE--EeeEe-cCCCcEEEEEECCCH
Confidence 456799999999999999999999862110 0 011122222 22233 223346789999999
Q ss_pred CCChhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCC-EEEEEecCCCCCc-ccc----HHHHHHHHHh
Q psy549 109 YQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVP-IVVVGNKCELEFK-DVR----REIAETIALY 182 (253)
Q Consensus 109 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~-~~~----~~~~~~~~~~ 182 (253)
++|.......+..+|++++|+|+.++..-.... ++..+.. .++| +++|+||+|+.+. ... .+....+...
T Consensus 86 ~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~-~~~~~~~---~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~ 161 (394)
T PRK12736 86 ADYVKNMITGAAQMDGAILVVAATDGPMPQTRE-HILLARQ---VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEY 161 (394)
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCchhHHH-HHHHHHH---cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHh
Confidence 988777766778899999999998753322222 2222222 3577 6788999998743 211 1222233332
Q ss_pred cC---CCcEEEeccCCCC--------CHHHHHHHHHHHH
Q psy549 183 DW---QCGFVECSAKENY--------NIVQVFKELLAQA 210 (253)
Q Consensus 183 ~~---~~~~~~~Sa~~~~--------~i~~l~~~l~~~~ 210 (253)
.+ .++++++||++|. ++.++++.+.+.+
T Consensus 162 ~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~l 200 (394)
T PRK12736 162 DFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYI 200 (394)
T ss_pred CCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhC
Confidence 32 3689999999983 4566666665554
No 230
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.66 E-value=4.7e-15 Score=121.21 Aligned_cols=115 Identities=17% Similarity=0.234 Sum_probs=79.8
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCC--CCCC--------ccccce-----------eeeeeeEEcCCCcEEEEEEEeCCCC
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDR--FISR--------YKETVE-----------ELHRGEYELPDGAQLTLDILDTSGA 108 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~--~~~~--------~~~t~~-----------~~~~~~~~~~~~~~~~~~l~D~~g~ 108 (253)
.+|+|+|++|+|||||+++|+... .... ...+.. ........+ +...+.+.+|||||+
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~-~~~~~~i~liDTPG~ 81 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQF-EYRDCVINLLDTPGH 81 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEE-eeCCEEEEEEECCCc
Confidence 579999999999999999998521 1100 001111 222223334 445678999999999
Q ss_pred CCChhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc
Q psy549 109 YQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK 169 (253)
Q Consensus 109 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 169 (253)
.+|.......++.+|++|+|+|+++..... ...++..... .++|+++++||+|+...
T Consensus 82 ~df~~~~~~~l~~aD~~IlVvda~~g~~~~-~~~i~~~~~~---~~~P~iivvNK~D~~~a 138 (267)
T cd04169 82 EDFSEDTYRTLTAVDSAVMVIDAAKGVEPQ-TRKLFEVCRL---RGIPIITFINKLDREGR 138 (267)
T ss_pred hHHHHHHHHHHHHCCEEEEEEECCCCccHH-HHHHHHHHHh---cCCCEEEEEECCccCCC
Confidence 998887778889999999999998764322 2334433322 46899999999998765
No 231
>KOG1145|consensus
Probab=99.65 E-value=2.5e-15 Score=128.65 Aligned_cols=157 Identities=24% Similarity=0.265 Sum_probs=122.6
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCCC-CCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEE
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDRF-ISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAF 125 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 125 (253)
...+-|.|+|+..-|||||+.+|-+... ..+....+...-...+.+++|+ .++|.||||+..|..++..-..-+|++
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G~--~iTFLDTPGHaAF~aMRaRGA~vtDIv 228 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSGK--SITFLDTPGHAAFSAMRARGANVTDIV 228 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCCC--EEEEecCCcHHHHHHHHhccCccccEE
Confidence 4667889999999999999999998776 3444555667777788887775 578999999999999999988899999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHH-------HHhcCCCcEEEeccCCCCC
Q psy549 126 VLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETI-------ALYDWQCGFVECSAKENYN 198 (253)
Q Consensus 126 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-------~~~~~~~~~~~~Sa~~~~~ 198 (253)
++|..++|.-.- +..+.+..-.+.+.|+++.+||+|.++... +...+++ .+.++.++++++||++|.|
T Consensus 229 VLVVAadDGVmp----QT~EaIkhAk~A~VpiVvAinKiDkp~a~p-ekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~n 303 (683)
T KOG1145|consen 229 VLVVAADDGVMP----QTLEAIKHAKSANVPIVVAINKIDKPGANP-EKVKRELLSQGIVVEDLGGDVQVIPISALTGEN 303 (683)
T ss_pred EEEEEccCCccH----hHHHHHHHHHhcCCCEEEEEeccCCCCCCH-HHHHHHHHHcCccHHHcCCceeEEEeecccCCC
Confidence 999999997443 333444444447799999999999887522 2222222 3346678999999999999
Q ss_pred HHHHHHHHHHHH
Q psy549 199 IVQVFKELLAQA 210 (253)
Q Consensus 199 i~~l~~~l~~~~ 210 (253)
++.|.+.+..++
T Consensus 304 l~~L~eaill~A 315 (683)
T KOG1145|consen 304 LDLLEEAILLLA 315 (683)
T ss_pred hHHHHHHHHHHH
Confidence 999988877655
No 232
>COG2262 HflX GTPases [General function prediction only]
Probab=99.65 E-value=1.8e-14 Score=120.22 Aligned_cols=161 Identities=17% Similarity=0.175 Sum_probs=121.9
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCC-CCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCC--hhhHHH------
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDR-FISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQF--PAMREL------ 117 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~--~~~~~~------ 117 (253)
...+.|+++|-.|+|||||+|+|++.. +..+...+|-+.....+.++++. .+.+.||.|--+. ..+...
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~--~vlLtDTVGFI~~LP~~LV~AFksTLE 267 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGR--KVLLTDTVGFIRDLPHPLVEAFKSTLE 267 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCc--eEEEecCccCcccCChHHHHHHHHHHH
Confidence 366899999999999999999999855 56788888889999999996655 4578899984432 222222
Q ss_pred hcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHHhcCCCcEEEeccCCCC
Q psy549 118 SISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIALYDWQCGFVECSAKENY 197 (253)
Q Consensus 118 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 197 (253)
-...+|.++.|.|++++.....+..-..-+.......+|+++|.||+|+..+.. ....+.. ... ..+.+||++|.
T Consensus 268 E~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~---~~~~~~~-~~~-~~v~iSA~~~~ 342 (411)
T COG2262 268 EVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE---ILAELER-GSP-NPVFISAKTGE 342 (411)
T ss_pred HhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh---hhhhhhh-cCC-CeEEEEeccCc
Confidence 245799999999999997766666666666665556699999999999765433 2222222 222 58999999999
Q ss_pred CHHHHHHHHHHHHHHhc
Q psy549 198 NIVQVFKELLAQAKVQY 214 (253)
Q Consensus 198 ~i~~l~~~l~~~~~~~~ 214 (253)
|++.+.+.|.+.+....
T Consensus 343 gl~~L~~~i~~~l~~~~ 359 (411)
T COG2262 343 GLDLLRERIIELLSGLR 359 (411)
T ss_pred CHHHHHHHHHHHhhhcc
Confidence 99999999999887543
No 233
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.64 E-value=7.7e-15 Score=116.52 Aligned_cols=113 Identities=15% Similarity=0.198 Sum_probs=78.8
Q ss_pred eEEEECCCCCCHHHHHHHHHhCCC--CCCcccc---------------ceeeeeeeEEcC-------CCcEEEEEEEeCC
Q psy549 51 RVVVMGGARVGKSSIISQFLYDRF--ISRYKET---------------VEELHRGEYELP-------DGAQLTLDILDTS 106 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~~~~--~~~~~~t---------------~~~~~~~~~~~~-------~~~~~~~~l~D~~ 106 (253)
+|+|+|+.++|||||+.+|+...- ......+ +.......+.+. ++..+.+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 799999999999999999985331 1100000 000011111221 2446889999999
Q ss_pred CCCCChhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCC
Q psy549 107 GAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELE 167 (253)
Q Consensus 107 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 167 (253)
|+.+|.......++.+|++++|+|+.++...+....+.. ... .++|+++|+||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~-~~~---~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQ-ALK---ERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHH-HHH---cCCCEEEEEECCCcc
Confidence 999999999999999999999999998766554333222 222 457999999999976
No 234
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.63 E-value=1.1e-14 Score=125.76 Aligned_cols=145 Identities=17% Similarity=0.203 Sum_probs=91.7
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCC-------C-----CC-----CccccceeeeeeeEEcCCCcEEEEEEEeCCCC
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDR-------F-----IS-----RYKETVEELHRGEYELPDGAQLTLDILDTSGA 108 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~-------~-----~~-----~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~ 108 (253)
.++.++|+++|+.++|||||+++|++.. + .. .....+.+. ..+.+ +.....+.||||||+
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~--~~~~~-~~~~~~~~liDtpGh 85 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINT--AHVEY-ETENRHYAHVDCPGH 85 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceee--EEEEE-cCCCEEEEEEECCch
Confidence 4567999999999999999999998420 0 00 011222232 23333 334457899999999
Q ss_pred CCChhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEE-EEEecCCCCCcc-ccH----HHHHHHHHh
Q psy549 109 YQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIV-VVGNKCELEFKD-VRR----EIAETIALY 182 (253)
Q Consensus 109 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~~-~~~----~~~~~~~~~ 182 (253)
++|..........+|++++|+|+.++......+ .+..+.. .++|.+ +|+||+|+.+.. ..+ +....+...
T Consensus 86 ~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e-~l~~~~~---~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~ 161 (394)
T TIGR00485 86 ADYVKNMITGAAQMDGAILVVSATDGPMPQTRE-HILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEY 161 (394)
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHH-HHHHHHH---cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhc
Confidence 988766666677899999999998753323222 2222222 346765 689999987542 111 222223321
Q ss_pred cC---CCcEEEeccCCCC
Q psy549 183 DW---QCGFVECSAKENY 197 (253)
Q Consensus 183 ~~---~~~~~~~Sa~~~~ 197 (253)
.. .++++++|+.++.
T Consensus 162 ~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 162 DFPGDDTPIIRGSALKAL 179 (394)
T ss_pred CCCccCccEEECcccccc
Confidence 11 2789999999875
No 235
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.62 E-value=2.4e-14 Score=116.68 Aligned_cols=163 Identities=17% Similarity=0.152 Sum_probs=117.4
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCCC-CCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChh----hHHH---hccc
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDRF-ISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPA----MREL---SIST 121 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~----~~~~---~~~~ 121 (253)
.-|.+||-|++|||||++.+.+.+. +.+|+.||..+..+.+.+.++. .|.+-|.||..+-.+ +-.. -++.
T Consensus 160 ADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~~--sfv~ADIPGLIEGAs~G~GLG~~FLrHIER 237 (369)
T COG0536 160 ADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGE--SFVVADIPGLIEGASEGVGLGLRFLRHIER 237 (369)
T ss_pred cccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCCC--cEEEecCcccccccccCCCccHHHHHHHHh
Confidence 3578999999999999999999775 8999999999999988873333 578999999665322 2222 3567
Q ss_pred CCEEEEEEECCChh---hHHHHHHHHHHHHHhc--CCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCC
Q psy549 122 ADAFVLVYAVDDAS---TWDVVKDLREQIVNKR--GLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKE 195 (253)
Q Consensus 122 ~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~ 195 (253)
+.+++.|.|++..+ ..++......++..+. -.+.|.++|+||+|+... +..+...+.+.........+++|+.+
T Consensus 238 t~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t 317 (369)
T COG0536 238 TRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALT 317 (369)
T ss_pred hheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhc
Confidence 89999999998654 2444444445544432 245899999999996655 44455555555422222222399999
Q ss_pred CCCHHHHHHHHHHHHHHhc
Q psy549 196 NYNIVQVFKELLAQAKVQY 214 (253)
Q Consensus 196 ~~~i~~l~~~l~~~~~~~~ 214 (253)
+.|+++++..+.+.+....
T Consensus 318 ~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 318 REGLDELLRALAELLEETK 336 (369)
T ss_pred ccCHHHHHHHHHHHHHHhh
Confidence 9999999999999887664
No 236
>CHL00071 tufA elongation factor Tu
Probab=99.61 E-value=2.3e-14 Score=124.22 Aligned_cols=147 Identities=19% Similarity=0.176 Sum_probs=94.1
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCCCC--C---------------CccccceeeeeeeEEcCCCcEEEEEEEeCCCC
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDRFI--S---------------RYKETVEELHRGEYELPDGAQLTLDILDTSGA 108 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~--~---------------~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~ 108 (253)
.++.++|+++|++++|||||+++|++..-. . .....+.+.....+.. ....+.|+||||+
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~---~~~~~~~iDtPGh 85 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYET---ENRHYAHVDCPGH 85 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEcc---CCeEEEEEECCCh
Confidence 456799999999999999999999964210 0 0011222222222222 2346789999999
Q ss_pred CCChhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCC-EEEEEecCCCCCccc-c----HHHHHHHHHh
Q psy549 109 YQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVP-IVVVGNKCELEFKDV-R----REIAETIALY 182 (253)
Q Consensus 109 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~-~----~~~~~~~~~~ 182 (253)
.+|.......+..+|++++|+|+.....-+. ...+..+.. .++| +++++||+|+.+... . .+....+...
T Consensus 86 ~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt-~~~~~~~~~---~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~ 161 (409)
T CHL00071 86 ADYVKNMITGAAQMDGAILVVSAADGPMPQT-KEHILLAKQ---VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKY 161 (409)
T ss_pred HHHHHHHHHHHHhCCEEEEEEECCCCCcHHH-HHHHHHHHH---cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 8887777777889999999999987543222 222332322 4578 678899999976421 1 2233333332
Q ss_pred cC---CCcEEEeccCCCCCH
Q psy549 183 DW---QCGFVECSAKENYNI 199 (253)
Q Consensus 183 ~~---~~~~~~~Sa~~~~~i 199 (253)
.+ .++++++|+.+|.++
T Consensus 162 ~~~~~~~~ii~~Sa~~g~n~ 181 (409)
T CHL00071 162 DFPGDDIPIVSGSALLALEA 181 (409)
T ss_pred CCCCCcceEEEcchhhcccc
Confidence 22 378999999998743
No 237
>KOG0462|consensus
Probab=99.61 E-value=1.2e-14 Score=124.51 Aligned_cols=158 Identities=19% Similarity=0.247 Sum_probs=119.0
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCC--CCC--------------CccccceeeeeeeEEcCCCcEEEEEEEeCCCCCC
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDR--FIS--------------RYKETVEELHRGEYELPDGAQLTLDILDTSGAYQ 110 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~--~~~--------------~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~ 110 (253)
.+.-+++||-+..-|||||..+|+... +.. .....|..-....+.+.+++.+.+.++||||+-+
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 455689999999999999999998422 111 1112222333334444468889999999999999
Q ss_pred ChhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCcc---ccHHHHHHHHHhcCCCc
Q psy549 111 FPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKD---VRREIAETIALYDWQCG 187 (253)
Q Consensus 111 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~ 187 (253)
|.......+.-+|++|+|+|++.+.--+.+..++..+. .++.+|.|+||+|++... +..+..+.|. ....+
T Consensus 138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe----~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~--~~~~~ 211 (650)
T KOG0462|consen 138 FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE----AGLAIIPVLNKIDLPSADPERVENQLFELFD--IPPAE 211 (650)
T ss_pred ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH----cCCeEEEeeeccCCCCCCHHHHHHHHHHHhc--CCccc
Confidence 99999888999999999999999866566665555544 457899999999999873 3333333333 35568
Q ss_pred EEEeccCCCCCHHHHHHHHHHHH
Q psy549 188 FVECSAKENYNIVQVFKELLAQA 210 (253)
Q Consensus 188 ~~~~Sa~~~~~i~~l~~~l~~~~ 210 (253)
++.+||++|.|+.++|+++++.+
T Consensus 212 ~i~vSAK~G~~v~~lL~AII~rV 234 (650)
T KOG0462|consen 212 VIYVSAKTGLNVEELLEAIIRRV 234 (650)
T ss_pred eEEEEeccCccHHHHHHHHHhhC
Confidence 99999999999999999999988
No 238
>PRK12735 elongation factor Tu; Reviewed
Probab=99.61 E-value=1.6e-14 Score=124.74 Aligned_cols=158 Identities=16% Similarity=0.207 Sum_probs=98.7
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCC-------CC--CC--------ccccceeeeeeeEEcCCCcEEEEEEEeCCCC
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDR-------FI--SR--------YKETVEELHRGEYELPDGAQLTLDILDTSGA 108 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~-------~~--~~--------~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~ 108 (253)
.++.++|+++|++++|||||+++|++.. +. .. ....+.+.. ...+ ......+.|+||||+
T Consensus 9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~--~~~~-~~~~~~i~~iDtPGh 85 (396)
T PRK12735 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTS--HVEY-ETANRHYAHVDCPGH 85 (396)
T ss_pred CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEe--eeEE-cCCCcEEEEEECCCH
Confidence 4567999999999999999999998621 00 00 111112222 2222 222346789999999
Q ss_pred CCChhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEE-EEEecCCCCCcc-ccH----HHHHHHHHh
Q psy549 109 YQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIV-VVGNKCELEFKD-VRR----EIAETIALY 182 (253)
Q Consensus 109 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~~-~~~----~~~~~~~~~ 182 (253)
.+|.......+..+|++++|+|+.+...-.. ..++..+.. .++|.+ +++||+|+.+.. ..+ +....+...
T Consensus 86 ~~f~~~~~~~~~~aD~~llVvda~~g~~~qt-~e~l~~~~~---~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~ 161 (396)
T PRK12735 86 ADYVKNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKY 161 (396)
T ss_pred HHHHHHHHhhhccCCEEEEEEECCCCCchhH-HHHHHHHHH---cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHc
Confidence 8887666677788999999999987543222 223332222 457865 579999987431 111 222222221
Q ss_pred cC---CCcEEEeccCCCC----------CHHHHHHHHHHHH
Q psy549 183 DW---QCGFVECSAKENY----------NIVQVFKELLAQA 210 (253)
Q Consensus 183 ~~---~~~~~~~Sa~~~~----------~i~~l~~~l~~~~ 210 (253)
.+ ..+++++|++++. ++.++++.|...+
T Consensus 162 ~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~ 202 (396)
T PRK12735 162 DFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI 202 (396)
T ss_pred CCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence 11 3789999999984 5667776666544
No 239
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.61 E-value=3.6e-14 Score=121.74 Aligned_cols=83 Identities=19% Similarity=0.270 Sum_probs=62.7
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCCC-CCCccccceeeeeeeEEcC--------------------C-CcEEEEEEEeCCC
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDRF-ISRYKETVEELHRGEYELP--------------------D-GAQLTLDILDTSG 107 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~--------------------~-~~~~~~~l~D~~g 107 (253)
++|+|+|.||||||||+|+|++... ..+++.++.+...+.+.++ + ...+.+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 6899999999999999999998765 4577777765555544321 1 2347799999999
Q ss_pred CC----CChhhHHHh---cccCCEEEEEEECC
Q psy549 108 AY----QFPAMRELS---ISTADAFVLVYAVD 132 (253)
Q Consensus 108 ~~----~~~~~~~~~---~~~~d~~i~v~d~~ 132 (253)
.. +...+...+ ++++|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 53 334444445 88999999999996
No 240
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=1.1e-14 Score=125.30 Aligned_cols=161 Identities=24% Similarity=0.247 Sum_probs=119.1
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCCCC-CCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEE
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDRFI-SRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFV 126 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 126 (253)
..+-|+++|+-..|||||+.++-+.... .+....|.......+.+..+..-.+.|.||||++-|..++..-..-+|+++
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaI 83 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAI 83 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEE
Confidence 4567999999999999999999987763 444445556666666662112236899999999999999999889999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHH-------hcCCCcEEEeccCCCCCH
Q psy549 127 LVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIAL-------YDWQCGFVECSAKENYNI 199 (253)
Q Consensus 127 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-------~~~~~~~~~~Sa~~~~~i 199 (253)
+|.+++|.-.- +..+.+......+.|+++++||+|.++.. ......++.. ......++++||++|.|+
T Consensus 84 LVVa~dDGv~p----QTiEAI~hak~a~vP~iVAiNKiDk~~~n-p~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi 158 (509)
T COG0532 84 LVVAADDGVMP----QTIEAINHAKAAGVPIVVAINKIDKPEAN-PDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEGI 158 (509)
T ss_pred EEEEccCCcch----hHHHHHHHHHHCCCCEEEEEecccCCCCC-HHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCCH
Confidence 99999997443 33334444444779999999999998642 2233333332 123467899999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy549 200 VQVFKELLAQAKVQ 213 (253)
Q Consensus 200 ~~l~~~l~~~~~~~ 213 (253)
.+|+..+.-.....
T Consensus 159 ~eLL~~ill~aev~ 172 (509)
T COG0532 159 DELLELILLLAEVL 172 (509)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999887766444
No 241
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.61 E-value=2.2e-14 Score=127.23 Aligned_cols=117 Identities=16% Similarity=0.221 Sum_probs=80.4
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHh--CCCC---------------CCcccc---ce-eeeeeeEEcCCCcEEEEEEEeC
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLY--DRFI---------------SRYKET---VE-ELHRGEYELPDGAQLTLDILDT 105 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~--~~~~---------------~~~~~t---~~-~~~~~~~~~~~~~~~~~~l~D~ 105 (253)
....+|+|+|++++|||||+++|+. +... .++... .. ........+ +...+.+.+|||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~-~~~~~~inliDT 86 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQF-PYRDCLINLLDT 86 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEE-EECCEEEEEEEC
Confidence 3567999999999999999999973 2110 000000 00 122222333 334578999999
Q ss_pred CCCCCChhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCC
Q psy549 106 SGAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEF 168 (253)
Q Consensus 106 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 168 (253)
||+.+|.......++.+|++|+|+|+.+..... ...++..... .++|+++++||+|+..
T Consensus 87 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~-t~~l~~~~~~---~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 87 PGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQ-TRKLMEVCRL---RDTPIFTFINKLDRDG 145 (526)
T ss_pred CCchhhHHHHHHHHHHCCEEEEEEecCCCCCHH-HHHHHHHHHh---cCCCEEEEEECCcccc
Confidence 999999888888899999999999998764322 2334433322 4689999999999764
No 242
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.61 E-value=5.2e-15 Score=112.67 Aligned_cols=118 Identities=17% Similarity=0.213 Sum_probs=74.8
Q ss_pred cceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHH---hcccCCEE
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMREL---SISTADAF 125 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~---~~~~~d~~ 125 (253)
.-.|+|+|+.|+|||+|..+|..+.......+. .......+ .+...-.+.++|+||+.+.+..... +...+.++
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~~~~~--~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~I 79 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNIAYNV--NNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGI 79 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEEECCG--SSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEE
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCceEEe--ecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEE
Confidence 457999999999999999999999776554444 22222111 1223336789999999998765544 47889999
Q ss_pred EEEEECCC-hhhHHHHHHHHHHHHHh---cCCCCCEEEEEecCCCCCc
Q psy549 126 VLVYAVDD-ASTWDVVKDLREQIVNK---RGLMVPIVVVGNKCELEFK 169 (253)
Q Consensus 126 i~v~d~~~-~~s~~~~~~~~~~~~~~---~~~~~piilv~nK~Dl~~~ 169 (253)
|||.|.+. ...+..+..++..+... ....+|++|+.||.|+...
T Consensus 80 IfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 80 IFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp EEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred EEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence 99999974 34455555555544442 2356999999999998775
No 243
>KOG1191|consensus
Probab=99.60 E-value=7e-15 Score=124.67 Aligned_cols=166 Identities=18% Similarity=0.160 Sum_probs=114.1
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCC--CCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCC-ChhhHH------
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDR--FISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQ-FPAMRE------ 116 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-~~~~~~------ 116 (253)
.+..+.|+|+|+||||||||+|.|.+.. +++..+.||+|.....+.+ +| +++.+.||+|..+ -....+
T Consensus 265 lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~-~G--~~v~L~DTAGiRe~~~~~iE~~gI~r 341 (531)
T KOG1191|consen 265 LQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTV-NG--VPVRLSDTAGIREESNDGIEALGIER 341 (531)
T ss_pred hhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeec-CC--eEEEEEeccccccccCChhHHHhHHH
Confidence 3566999999999999999999999876 5788999999999999997 77 4668999999766 221111
Q ss_pred --HhcccCCEEEEEEECCCh--hhHHHHHHHHHHHHHhc------CCCCCEEEEEecCCCCCc--cccHHHHHHHH-Hhc
Q psy549 117 --LSISTADAFVLVYAVDDA--STWDVVKDLREQIVNKR------GLMVPIVVVGNKCELEFK--DVRREIAETIA-LYD 183 (253)
Q Consensus 117 --~~~~~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~------~~~~piilv~nK~Dl~~~--~~~~~~~~~~~-~~~ 183 (253)
..++.+|++++|+|+... ++-..+...++...... ....|++++.||+|+... ...-....... .-.
T Consensus 342 A~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~ 421 (531)
T KOG1191|consen 342 ARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGR 421 (531)
T ss_pred HHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccccccC
Confidence 146789999999999432 22222333333322211 133789999999998765 11110000111 101
Q ss_pred CCC-cEEEeccCCCCCHHHHHHHHHHHHHHhc
Q psy549 184 WQC-GFVECSAKENYNIVQVFKELLAQAKVQY 214 (253)
Q Consensus 184 ~~~-~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 214 (253)
... .+.++|++++.|++++.+.+...+....
T Consensus 422 ~~~~i~~~vs~~tkeg~~~L~~all~~~~~~~ 453 (531)
T KOG1191|consen 422 SVFPIVVEVSCTTKEGCERLSTALLNIVERLV 453 (531)
T ss_pred cccceEEEeeechhhhHHHHHHHHHHHHHHhh
Confidence 123 3556999999999999999998876653
No 244
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.59 E-value=3.1e-14 Score=116.55 Aligned_cols=112 Identities=18% Similarity=0.188 Sum_probs=77.1
Q ss_pred eEEEECCCCCCHHHHHHHHHhCC--CC-----C------------CccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCC
Q psy549 51 RVVVMGGARVGKSSIISQFLYDR--FI-----S------------RYKETVEELHRGEYELPDGAQLTLDILDTSGAYQF 111 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~~~--~~-----~------------~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~ 111 (253)
+|+|+|++|+|||||+++|+... .. . .....+.+.....+.+ ....+.+|||||+.++
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~---~~~~i~liDTPG~~df 77 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFW---KDHRINIIDTPGHVDF 77 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEE---CCEEEEEEECCCcHHH
Confidence 58999999999999999997411 10 0 0011111222233333 2367889999999998
Q ss_pred hhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc
Q psy549 112 PAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK 169 (253)
Q Consensus 112 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 169 (253)
...+...++.+|++++|+|+.+...-.. ...+..+.. .++|+++++||+|+.+.
T Consensus 78 ~~~~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~---~~~p~ivviNK~D~~~a 131 (270)
T cd01886 78 TIEVERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADR---YNVPRIAFVNKMDRTGA 131 (270)
T ss_pred HHHHHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCCCCCC
Confidence 8888889999999999999987643222 233333333 45899999999998754
No 245
>PRK13351 elongation factor G; Reviewed
Probab=99.59 E-value=2.5e-14 Score=131.76 Aligned_cols=116 Identities=16% Similarity=0.195 Sum_probs=82.4
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCCC-------------CCCcc------ccceeeeeeeEEcCCCcEEEEEEEeCCC
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDRF-------------ISRYK------ETVEELHRGEYELPDGAQLTLDILDTSG 107 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~~-------------~~~~~------~t~~~~~~~~~~~~~~~~~~~~l~D~~g 107 (253)
....+|+|+|+.++|||||+++|+...- ..++. ..+.......+.+ ..+.+.+|||||
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~---~~~~i~liDtPG 82 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDW---DNHRINLIDTPG 82 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEE---CCEEEEEEECCC
Confidence 3568999999999999999999985321 00000 0011111112222 346889999999
Q ss_pred CCCChhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc
Q psy549 108 AYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK 169 (253)
Q Consensus 108 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 169 (253)
+.+|...+..+++.+|++++|+|+++.........| ..+.. .++|+++|+||+|+...
T Consensus 83 ~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~---~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 83 HIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR---YGIPRLIFINKMDRVGA 140 (687)
T ss_pred cHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh---cCCCEEEEEECCCCCCC
Confidence 999999999999999999999999987766554434 33332 45899999999998754
No 246
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.59 E-value=2.2e-14 Score=124.15 Aligned_cols=146 Identities=22% Similarity=0.187 Sum_probs=91.8
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCC--CCCCc----------ccc----------------------ceeeeeeeEEcCCC
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDR--FISRY----------KET----------------------VEELHRGEYELPDG 95 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~--~~~~~----------~~t----------------------~~~~~~~~~~~~~~ 95 (253)
++|+|+|+.++|||||+++|+... ..... ..+ +.+.....+..
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~--- 77 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFST--- 77 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEcc---
Confidence 589999999999999999998422 11100 000 11222222222
Q ss_pred cEEEEEEEeCCCCCCChhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCcc--ccH
Q psy549 96 AQLTLDILDTSGAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKD--VRR 173 (253)
Q Consensus 96 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~ 173 (253)
....+.|+||||+++|.......+..+|++++|+|+..+..-+..+.+.. +... ...++++|+||+|+.... ...
T Consensus 78 ~~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~-~~~~--~~~~iivviNK~D~~~~~~~~~~ 154 (406)
T TIGR02034 78 DKRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYI-ASLL--GIRHVVLAVNKMDLVDYDEEVFE 154 (406)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHH-HHHc--CCCcEEEEEEecccccchHHHHH
Confidence 33578899999999987777777889999999999987643222222221 2221 124688999999986531 111
Q ss_pred HHHHHH---HH-hc-CCCcEEEeccCCCCCHHH
Q psy549 174 EIAETI---AL-YD-WQCGFVECSAKENYNIVQ 201 (253)
Q Consensus 174 ~~~~~~---~~-~~-~~~~~~~~Sa~~~~~i~~ 201 (253)
++.+.+ .. .. ...+++++||++|.|+.+
T Consensus 155 ~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 155 NIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 222222 12 11 235799999999999885
No 247
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.59 E-value=2.4e-14 Score=125.96 Aligned_cols=151 Identities=23% Similarity=0.177 Sum_probs=95.1
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCC--CCCCc----------ccc----------------------ceeeeeeeEE
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDR--FISRY----------KET----------------------VEELHRGEYE 91 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~--~~~~~----------~~t----------------------~~~~~~~~~~ 91 (253)
.+..++|+|+|+.++|||||+++|+... +.... ..+ +.+.....+.
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 4677999999999999999999998532 11100 111 1122222222
Q ss_pred cCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc--
Q psy549 92 LPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-- 169 (253)
Q Consensus 92 ~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-- 169 (253)
.....+.|+||||++.|.......+..+|++++|+|+..+..-.....+. .+.... ..|+++|+||+|+...
T Consensus 104 ---~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~-l~~~lg--~~~iIvvvNKiD~~~~~~ 177 (474)
T PRK05124 104 ---TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSF-IATLLG--IKHLVVAVNKMDLVDYSE 177 (474)
T ss_pred ---cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHH-HHHHhC--CCceEEEEEeeccccchh
Confidence 23356789999999988766666678999999999998754322222222 111111 2478999999998743
Q ss_pred cccHHHHHHHH---Hhc---CCCcEEEeccCCCCCHHHH
Q psy549 170 DVRREIAETIA---LYD---WQCGFVECSAKENYNIVQV 202 (253)
Q Consensus 170 ~~~~~~~~~~~---~~~---~~~~~~~~Sa~~~~~i~~l 202 (253)
....+..+.+. ... ...+++++||++|.|+.++
T Consensus 178 ~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 178 EVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 11222222222 111 2478999999999999864
No 248
>PLN03126 Elongation factor Tu; Provisional
Probab=99.58 E-value=6.6e-14 Score=122.80 Aligned_cols=146 Identities=17% Similarity=0.153 Sum_probs=94.1
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCCC------CCC-----------ccccceeeeeeeEEcCCCcEEEEEEEeCCCC
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDRF------ISR-----------YKETVEELHRGEYELPDGAQLTLDILDTSGA 108 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~~------~~~-----------~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~ 108 (253)
.++.++|+++|++++|||||+++|+.... ... ....+.+.....+.. ....+.|+|+||+
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~---~~~~i~liDtPGh 154 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYET---ENRHYAHVDCPGH 154 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEec---CCcEEEEEECCCH
Confidence 46688999999999999999999995211 000 001111222222222 3347789999999
Q ss_pred CCChhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCC-EEEEEecCCCCCcc-ccH----HHHHHHHHh
Q psy549 109 YQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVP-IVVVGNKCELEFKD-VRR----EIAETIALY 182 (253)
Q Consensus 109 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~-~~~----~~~~~~~~~ 182 (253)
++|.......+..+|++++|+|+.+...-.. ..++..+.. .++| +++++||+|+.+.+ ..+ ++...+...
T Consensus 155 ~~f~~~~~~g~~~aD~ailVVda~~G~~~qt-~e~~~~~~~---~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~ 230 (478)
T PLN03126 155 ADYVKNMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQ---VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSY 230 (478)
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHH---cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhc
Confidence 9988777777889999999999987654333 233333333 3577 77889999987531 111 222233321
Q ss_pred c---CCCcEEEeccCCCCC
Q psy549 183 D---WQCGFVECSAKENYN 198 (253)
Q Consensus 183 ~---~~~~~~~~Sa~~~~~ 198 (253)
. ..++++++|+.++.+
T Consensus 231 g~~~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 231 EFPGDDIPIISGSALLALE 249 (478)
T ss_pred CCCcCcceEEEEEcccccc
Confidence 1 257899999998853
No 249
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.58 E-value=6.2e-14 Score=100.49 Aligned_cols=105 Identities=25% Similarity=0.375 Sum_probs=73.7
Q ss_pred eEEEECCCCCCHHHHHHHHHhCCC--CCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhh---------HHHhc
Q psy549 51 RVVVMGGARVGKSSIISQFLYDRF--ISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAM---------RELSI 119 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~---------~~~~~ 119 (253)
+|+|+|.+|+|||||+|+|++... +.....++.......+.+ ++. .+.++||||...-... ....+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~-~~~--~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~ 77 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEY-NNK--KFILVDTPGINDGESQDNDGKEIRKFLEQI 77 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEE-TTE--EEEEEESSSCSSSSHHHHHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeee-cee--eEEEEeCCCCcccchhhHHHHHHHHHHHHH
Confidence 699999999999999999998543 455566666666666667 544 4579999997653111 22234
Q ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEec
Q psy549 120 STADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNK 163 (253)
Q Consensus 120 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK 163 (253)
..+|++++|+|+.++.. ......+..+ . .+.|+++|+||
T Consensus 78 ~~~d~ii~vv~~~~~~~-~~~~~~~~~l---~-~~~~~i~v~NK 116 (116)
T PF01926_consen 78 SKSDLIIYVVDASNPIT-EDDKNILREL---K-NKKPIILVLNK 116 (116)
T ss_dssp CTESEEEEEEETTSHSH-HHHHHHHHHH---H-TTSEEEEEEES
T ss_pred HHCCEEEEEEECCCCCC-HHHHHHHHHH---h-cCCCEEEEEcC
Confidence 78999999999877422 2223333333 2 56899999998
No 250
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.57 E-value=4.2e-14 Score=123.22 Aligned_cols=162 Identities=16% Similarity=0.149 Sum_probs=102.1
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCCC---CCCc--cccce--eeee---------eeE---EcCCC-----------
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDRF---ISRY--KETVE--ELHR---------GEY---ELPDG----------- 95 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~~---~~~~--~~t~~--~~~~---------~~~---~~~~~----------- 95 (253)
....++|+++|+...|||||+.+|.+... ..+. .-|.. .... ... .++++
T Consensus 31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (460)
T PTZ00327 31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG 110 (460)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence 36779999999999999999999996322 1110 00000 0000 000 01010
Q ss_pred c----EEEEEEEeCCCCCCChhhHHHhcccCCEEEEEEECCCh-hhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCcc
Q psy549 96 A----QLTLDILDTSGAYQFPAMRELSISTADAFVLVYAVDDA-STWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKD 170 (253)
Q Consensus 96 ~----~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 170 (253)
. ...+.|+|+||++.|.......+..+|++++|+|+.++ ...+..+++ ..+... .-.++++|+||+|+.+..
T Consensus 111 ~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl-~i~~~l--gi~~iIVvlNKiDlv~~~ 187 (460)
T PTZ00327 111 HKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHL-AAVEIM--KLKHIIILQNKIDLVKEA 187 (460)
T ss_pred ccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHH-HHHHHc--CCCcEEEEEecccccCHH
Confidence 0 13578999999998877777778899999999999974 222222222 222221 124689999999987542
Q ss_pred ccHHHHHHHHH-----hcCCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy549 171 VRREIAETIAL-----YDWQCGFVECSAKENYNIVQVFKELLAQA 210 (253)
Q Consensus 171 ~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 210 (253)
...+..+.+.. .....+++++||++|.|+++|++.|.+.+
T Consensus 188 ~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~l 232 (460)
T PTZ00327 188 QAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQI 232 (460)
T ss_pred HHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence 22222222222 12467899999999999999999988755
No 251
>PRK00049 elongation factor Tu; Reviewed
Probab=99.57 E-value=1.2e-13 Score=119.35 Aligned_cols=157 Identities=16% Similarity=0.192 Sum_probs=98.8
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCCCC---C--------------CccccceeeeeeeEEcCCCcEEEEEEEeCCCC
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDRFI---S--------------RYKETVEELHRGEYELPDGAQLTLDILDTSGA 108 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~---~--------------~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~ 108 (253)
.++.++|+++|+.++|||||+++|++.... . .....+.+.. ...+ ......+.|+||||+
T Consensus 9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~--~~~~-~~~~~~i~~iDtPG~ 85 (396)
T PRK00049 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTA--HVEY-ETEKRHYAHVDCPGH 85 (396)
T ss_pred CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeee--EEEE-cCCCeEEEEEECCCH
Confidence 467799999999999999999999962110 0 0111222222 2223 222346789999999
Q ss_pred CCChhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEE-EEEecCCCCCc-cc----cHHHHHHHHHh
Q psy549 109 YQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIV-VVGNKCELEFK-DV----RREIAETIALY 182 (253)
Q Consensus 109 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~-~~----~~~~~~~~~~~ 182 (253)
.+|.......+..+|++++|+|+..+..-.. ..++..+.. .++|++ +++||+|+.+. .. ..+....+...
T Consensus 86 ~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt-~~~~~~~~~---~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~ 161 (396)
T PRK00049 86 ADYVKNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKY 161 (396)
T ss_pred HHHHHHHHhhhccCCEEEEEEECCCCCchHH-HHHHHHHHH---cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhc
Confidence 8887777777889999999999987543222 233333333 357876 57999998743 11 11222333332
Q ss_pred c---CCCcEEEeccCCCC----------CHHHHHHHHHHH
Q psy549 183 D---WQCGFVECSAKENY----------NIVQVFKELLAQ 209 (253)
Q Consensus 183 ~---~~~~~~~~Sa~~~~----------~i~~l~~~l~~~ 209 (253)
. ..++++++|++++. ++..+++.|...
T Consensus 162 ~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~ 201 (396)
T PRK00049 162 DFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSY 201 (396)
T ss_pred CCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhc
Confidence 2 24789999999875 345555555543
No 252
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.57 E-value=5.8e-14 Score=122.62 Aligned_cols=149 Identities=18% Similarity=0.240 Sum_probs=97.1
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCC--CCC------------------------Ccc------ccceeeeeeeEEcC
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDR--FIS------------------------RYK------ETVEELHRGEYELP 93 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~--~~~------------------------~~~------~t~~~~~~~~~~~~ 93 (253)
.++.++|+++|+.++|||||+.+|+... ... +.. ..+.+..... +
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~--~- 80 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWK--F- 80 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEE--E-
Confidence 4677999999999999999999998521 110 000 1111222222 2
Q ss_pred CCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEEEECCChhh-------HHHHHHHHHHHHHhcCCCCC-EEEEEecCC
Q psy549 94 DGAQLTLDILDTSGAYQFPAMRELSISTADAFVLVYAVDDAST-------WDVVKDLREQIVNKRGLMVP-IVVVGNKCE 165 (253)
Q Consensus 94 ~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s-------~~~~~~~~~~~~~~~~~~~p-iilv~nK~D 165 (253)
......+.|+|+||+.+|.......+..+|++++|+|+..+.- -+..+.|. .+.. .++| +++++||+|
T Consensus 81 ~~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~-~~~~---~gi~~iiv~vNKmD 156 (446)
T PTZ00141 81 ETPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHAL-LAFT---LGVKQMIVCINKMD 156 (446)
T ss_pred ccCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHH-HHHH---cCCCeEEEEEEccc
Confidence 3344678999999999998888888899999999999987531 11222222 2222 3466 678999999
Q ss_pred CCCc--------cccHHHHHHHHHhcC---CCcEEEeccCCCCCHHH
Q psy549 166 LEFK--------DVRREIAETIALYDW---QCGFVECSAKENYNIVQ 201 (253)
Q Consensus 166 l~~~--------~~~~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~ 201 (253)
.... .+..++...+....+ .++++++|+.+|.|+.+
T Consensus 157 ~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 157 DKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred cccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 5421 233334444443333 47899999999999864
No 253
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.57 E-value=5.4e-14 Score=122.74 Aligned_cols=151 Identities=18% Similarity=0.270 Sum_probs=96.9
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCC--CCC------------------------Cccc-cce---eeeeeeEEcCCC
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDR--FIS------------------------RYKE-TVE---ELHRGEYELPDG 95 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~--~~~------------------------~~~~-t~~---~~~~~~~~~~~~ 95 (253)
.++.++|+++|+.++|||||+.+|+... ... +... ... ........+ ..
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~-~~ 82 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKF-ET 82 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEe-cC
Confidence 4678999999999999999999998421 100 0000 000 111112222 33
Q ss_pred cEEEEEEEeCCCCCCChhhHHHhcccCCEEEEEEECCChhhHH-------HHHHHHHHHHHhcCCCC-CEEEEEecCCCC
Q psy549 96 AQLTLDILDTSGAYQFPAMRELSISTADAFVLVYAVDDASTWD-------VVKDLREQIVNKRGLMV-PIVVVGNKCELE 167 (253)
Q Consensus 96 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~-------~~~~~~~~~~~~~~~~~-piilv~nK~Dl~ 167 (253)
....+.++|+||+++|.......+..+|++|+|+|+++. .|+ .....+..... .++ ++++++||+|+.
T Consensus 83 ~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~---~gi~~iIV~vNKmD~~ 158 (447)
T PLN00043 83 TKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFT---LGVKQMICCCNKMDAT 158 (447)
T ss_pred CCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHH---cCCCcEEEEEEcccCC
Confidence 456789999999999998888889999999999999874 221 22222222222 446 468889999986
Q ss_pred Cc--------cccHHHHHHHHHhcC---CCcEEEeccCCCCCHHH
Q psy549 168 FK--------DVRREIAETIALYDW---QCGFVECSAKENYNIVQ 201 (253)
Q Consensus 168 ~~--------~~~~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~ 201 (253)
.. ....++...+....+ .++++++|+.+|.|+.+
T Consensus 159 ~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 159 TPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred chhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 32 122333333333222 37899999999999854
No 254
>PLN03127 Elongation factor Tu; Provisional
Probab=99.56 E-value=2.3e-13 Score=118.77 Aligned_cols=158 Identities=18% Similarity=0.210 Sum_probs=97.7
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhC------C--CC---------CCccccceeeeeeeEEcCCCcEEEEEEEeCCCC
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYD------R--FI---------SRYKETVEELHRGEYELPDGAQLTLDILDTSGA 108 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~------~--~~---------~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~ 108 (253)
.++.++|+++|+.++|||||+++|.+. . +. ......+.+.....+.. ....+.|+||||+
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~---~~~~i~~iDtPGh 134 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYET---AKRHYAHVDCPGH 134 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcC---CCeEEEEEECCCc
Confidence 467899999999999999999999731 1 00 00122223332223322 3346789999999
Q ss_pred CCChhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCC-EEEEEecCCCCCc-cccH----HHHHHHHHh
Q psy549 109 YQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVP-IVVVGNKCELEFK-DVRR----EIAETIALY 182 (253)
Q Consensus 109 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~-~~~~----~~~~~~~~~ 182 (253)
.+|.......+..+|++++|+|+.++..-+. ...+..+.. .++| +++++||+|+.+. ...+ +..+.+...
T Consensus 135 ~~f~~~~~~g~~~aD~allVVda~~g~~~qt-~e~l~~~~~---~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~ 210 (447)
T PLN03127 135 ADYVKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ---VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFY 210 (447)
T ss_pred cchHHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHH---cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHh
Confidence 9887766666778999999999987643222 222222222 4578 4788999998753 2111 111222221
Q ss_pred cC---CCcEEEeccC---CCCC-------HHHHHHHHHHHH
Q psy549 183 DW---QCGFVECSAK---ENYN-------IVQVFKELLAQA 210 (253)
Q Consensus 183 ~~---~~~~~~~Sa~---~~~~-------i~~l~~~l~~~~ 210 (253)
.+ .+|++++|+. ++.| +.++++.+...+
T Consensus 211 ~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l 251 (447)
T PLN03127 211 KFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI 251 (447)
T ss_pred CCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhC
Confidence 22 4788888876 4444 566777666554
No 255
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.56 E-value=6.9e-14 Score=114.90 Aligned_cols=123 Identities=18% Similarity=0.202 Sum_probs=81.8
Q ss_pred eEEEECCCCCCHHHHHHHHHhCCCCCCc-----cccc--------------eeeeeeeEEcCCCcEEEEEEEeCCCCCCC
Q psy549 51 RVVVMGGARVGKSSIISQFLYDRFISRY-----KETV--------------EELHRGEYELPDGAQLTLDILDTSGAYQF 111 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~~~~~~~~-----~~t~--------------~~~~~~~~~~~~~~~~~~~l~D~~g~~~~ 111 (253)
+|+|+|++|+|||||+++++........ ..++ .......+.+ ..+.+.+|||||+.+|
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~---~~~~i~liDtPG~~~f 77 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEW---KGHKINLIDTPGYADF 77 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEE---CCEEEEEEECcCHHHH
Confidence 5899999999999999999853211000 0010 0111122222 3467899999999888
Q ss_pred hhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHH
Q psy549 112 PAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIAL 181 (253)
Q Consensus 112 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~ 181 (253)
...+..+++.+|++++|+|+++.........| ..+.. .++|+++|+||+|..... .......+..
T Consensus 78 ~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~-~~~~~---~~~p~iivvNK~D~~~~~-~~~~~~~l~~ 142 (268)
T cd04170 78 VGETRAALRAADAALVVVSAQSGVEVGTEKLW-EFADE---AGIPRIIFINKMDRERAD-FDKTLAALQE 142 (268)
T ss_pred HHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHHH---cCCCEEEEEECCccCCCC-HHHHHHHHHH
Confidence 88888899999999999999987654433333 22222 458999999999987652 2334444544
No 256
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.55 E-value=6.7e-14 Score=127.71 Aligned_cols=150 Identities=21% Similarity=0.209 Sum_probs=93.3
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCC--CCCC----------ccccce----------------------eeeeeeEE
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDR--FISR----------YKETVE----------------------ELHRGEYE 91 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~--~~~~----------~~~t~~----------------------~~~~~~~~ 91 (253)
....++|+|+|++++|||||+++|+... +... ...+++ +.....+.
T Consensus 21 ~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~ 100 (632)
T PRK05506 21 RKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA 100 (632)
T ss_pred CCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc
Confidence 3456899999999999999999999633 2211 111211 11122222
Q ss_pred cCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc--
Q psy549 92 LPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-- 169 (253)
Q Consensus 92 ~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-- 169 (253)
. ....+.|+||||+++|.......+..+|++++|+|+..+..-+....+. .+... ...++++|+||+|+.+.
T Consensus 101 ~---~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~-~~~~~--~~~~iivvvNK~D~~~~~~ 174 (632)
T PRK05506 101 T---PKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSF-IASLL--GIRHVVLAVNKMDLVDYDQ 174 (632)
T ss_pred c---CCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHH-HHHHh--CCCeEEEEEEecccccchh
Confidence 2 2346789999999887666666788999999999998754322222222 22221 12578899999998642
Q ss_pred cccHHHHHHH----HHhcC-CCcEEEeccCCCCCHHH
Q psy549 170 DVRREIAETI----ALYDW-QCGFVECSAKENYNIVQ 201 (253)
Q Consensus 170 ~~~~~~~~~~----~~~~~-~~~~~~~Sa~~~~~i~~ 201 (253)
....+....+ ..... ..+++++||++|.|+.+
T Consensus 175 ~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 175 EVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 1112222222 22122 35799999999999874
No 257
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.54 E-value=6.8e-14 Score=114.93 Aligned_cols=140 Identities=19% Similarity=0.210 Sum_probs=82.0
Q ss_pred cceEEEECCCCCCHHHHHHHHHhCCCCCC----------ccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhh---
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYDRFISR----------YKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAM--- 114 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~~~~~~----------~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--- 114 (253)
.++|+++|.+|+|||||+|+|++..+... ...|.. ......+.. ++..+.+.+|||||.......
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~-~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEE-NGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEE-CCEEEEEEEEecCCccccccchhh
Confidence 58999999999999999999998876322 222322 334444555 677889999999995432110
Q ss_pred -----------------------HHHhcc--cCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc
Q psy549 115 -----------------------RELSIS--TADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK 169 (253)
Q Consensus 115 -----------------------~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 169 (253)
+...+. .+|+++++.+.+... +.... +..+.... ..+|+++|+||+|+...
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~-l~~~D--~~~lk~l~-~~v~vi~VinK~D~l~~ 158 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHG-LKPLD--IEFMKRLS-KRVNIIPVIAKADTLTP 158 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCC-CCHHH--HHHHHHHh-ccCCEEEEEECCCcCCH
Confidence 001222 356677777665311 11111 12222222 25899999999998653
Q ss_pred c---ccHHHHHHHHHhcCCCcEEEeccC
Q psy549 170 D---VRREIAETIALYDWQCGFVECSAK 194 (253)
Q Consensus 170 ~---~~~~~~~~~~~~~~~~~~~~~Sa~ 194 (253)
. ........... ..+++++.....
T Consensus 159 ~e~~~~k~~i~~~l~-~~~i~~~~~~~~ 185 (276)
T cd01850 159 EELKEFKQRIMEDIE-EHNIKIYKFPED 185 (276)
T ss_pred HHHHHHHHHHHHHHH-HcCCceECCCCC
Confidence 1 11222222233 456777776553
No 258
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.52 E-value=1.4e-13 Score=116.35 Aligned_cols=161 Identities=21% Similarity=0.264 Sum_probs=118.3
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCC--CC--------------CCccccce--eeeeeeEEcCCCcEEEEEEEeCCC
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDR--FI--------------SRYKETVE--ELHRGEYELPDGAQLTLDILDTSG 107 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~--~~--------------~~~~~t~~--~~~~~~~~~~~~~~~~~~l~D~~g 107 (253)
.+..-+..|+-+-.-|||||..|++... +. ......|. ....-.+...+|..+.+.++||||
T Consensus 6 ~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPG 85 (603)
T COG0481 6 QKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPG 85 (603)
T ss_pred hhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCC
Confidence 4455688999999999999999998422 10 00111112 334444555578899999999999
Q ss_pred CCCChhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHHh-c-CC
Q psy549 108 AYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIALY-D-WQ 185 (253)
Q Consensus 108 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-~-~~ 185 (253)
+-.|.......+..+.++++|+|++.+..-+.+...+..+.. +..++-|+||+||+..+. +...+++... + ..
T Consensus 86 HVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~----~LeIiPViNKIDLP~Adp-ervk~eIe~~iGid~ 160 (603)
T COG0481 86 HVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN----NLEIIPVLNKIDLPAADP-ERVKQEIEDIIGIDA 160 (603)
T ss_pred ccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc----CcEEEEeeecccCCCCCH-HHHHHHHHHHhCCCc
Confidence 999988888888889999999999998776777776666554 478999999999998633 2233333331 1 22
Q ss_pred CcEEEeccCCCCCHHHHHHHHHHHHH
Q psy549 186 CGFVECSAKENYNIVQVFKELLAQAK 211 (253)
Q Consensus 186 ~~~~~~Sa~~~~~i~~l~~~l~~~~~ 211 (253)
...+.+||++|.||+++++.|++.+.
T Consensus 161 ~dav~~SAKtG~gI~~iLe~Iv~~iP 186 (603)
T COG0481 161 SDAVLVSAKTGIGIEDVLEAIVEKIP 186 (603)
T ss_pred chheeEecccCCCHHHHHHHHHhhCC
Confidence 34689999999999999999999883
No 259
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.52 E-value=5.6e-14 Score=98.01 Aligned_cols=139 Identities=17% Similarity=0.189 Sum_probs=95.3
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhH----HHhcccCCEE
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMR----ELSISTADAF 125 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~----~~~~~~~d~~ 125 (253)
-||+++|..|+|||||.+.+.+...-.. ...-+.+ +.. -.+||||...-...+ .....++|++
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~lyk--------KTQAve~-~d~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi 68 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTLYK--------KTQAVEF-NDK----GDIDTPGEYFEHPRWYHALITTLQDADVI 68 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhhhc--------ccceeec-cCc----cccCCchhhhhhhHHHHHHHHHhhcccee
Confidence 3799999999999999999988764211 1112223 111 145899854433333 3356789999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHHH
Q psy549 126 VLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIALYDWQCGFVECSAKENYNIVQVFKE 205 (253)
Q Consensus 126 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 205 (253)
++|-.++++++... ..+.. + ...|+|-|++|.|++.+.......+.+.. .+.-++|++|+.++.|++++++.
T Consensus 69 ~~v~~and~~s~f~-p~f~~-~-----~~k~vIgvVTK~DLaed~dI~~~~~~L~e-aGa~~IF~~s~~d~~gv~~l~~~ 140 (148)
T COG4917 69 IYVHAANDPESRFP-PGFLD-I-----GVKKVIGVVTKADLAEDADISLVKRWLRE-AGAEPIFETSAVDNQGVEELVDY 140 (148)
T ss_pred eeeecccCccccCC-ccccc-c-----cccceEEEEecccccchHhHHHHHHHHHH-cCCcceEEEeccCcccHHHHHHH
Confidence 99999999876433 11111 1 23579999999999975444444444444 66889999999999999999998
Q ss_pred HHHH
Q psy549 206 LLAQ 209 (253)
Q Consensus 206 l~~~ 209 (253)
+...
T Consensus 141 L~~~ 144 (148)
T COG4917 141 LASL 144 (148)
T ss_pred HHhh
Confidence 7653
No 260
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.51 E-value=2.7e-13 Score=107.71 Aligned_cols=162 Identities=19% Similarity=0.234 Sum_probs=108.9
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCCC--CCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCC-------ChhhHH
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDRF--ISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQ-------FPAMRE 116 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-------~~~~~~ 116 (253)
....++|+++|..|+|||||||+|+.+.. +.....+++........+ ++. .+.|||+||.++ |+.+..
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~-~~~--~l~lwDtPG~gdg~~~D~~~r~~~~ 112 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSY-DGE--NLVLWDTPGLGDGKDKDAEHRQLYR 112 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhc-ccc--ceEEecCCCcccchhhhHHHHHHHH
Confidence 45779999999999999999999997554 222222333223333334 442 578999999776 566667
Q ss_pred HhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc----------------cccHHHHHHHH
Q psy549 117 LSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK----------------DVRREIAETIA 180 (253)
Q Consensus 117 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~----------------~~~~~~~~~~~ 180 (253)
.++...|.++++.++.|+.---+ .+++..+.... .+.++++++|.+|.... +..++.++.+.
T Consensus 113 d~l~~~DLvL~l~~~~draL~~d-~~f~~dVi~~~-~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~ 190 (296)
T COG3596 113 DYLPKLDLVLWLIKADDRALGTD-EDFLRDVIILG-LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALG 190 (296)
T ss_pred HHhhhccEEEEeccCCCccccCC-HHHHHHHHHhc-cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHH
Confidence 78888999999999998754323 33444444432 44899999999996543 11122222222
Q ss_pred Hh-cCCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy549 181 LY-DWQCGFVECSAKENYNIVQVFKELLAQAKV 212 (253)
Q Consensus 181 ~~-~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 212 (253)
+. ..-.|++.++...+.|++++...+++.+..
T Consensus 191 ~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~ 223 (296)
T COG3596 191 RLFQEVKPVVAVSGRLPWGLKELVRALITALPV 223 (296)
T ss_pred HHHhhcCCeEEeccccCccHHHHHHHHHHhCcc
Confidence 21 123467888889999999999999998753
No 261
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.51 E-value=3.7e-13 Score=123.93 Aligned_cols=116 Identities=16% Similarity=0.140 Sum_probs=82.8
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCC--C-----CCC------------ccccceeeeeeeEEcCCCcEEEEEEEeCCC
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDR--F-----ISR------------YKETVEELHRGEYELPDGAQLTLDILDTSG 107 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~--~-----~~~------------~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g 107 (253)
....+|+|+|++++|||||+++|+... . ..+ ...++.+.....+.+ + ...+.+|||||
T Consensus 8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~-~--~~~i~liDTPG 84 (689)
T TIGR00484 8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFW-K--GHRINIIDTPG 84 (689)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEE-C--CeEEEEEECCC
Confidence 345799999999999999999998421 1 000 112222333344444 3 35789999999
Q ss_pred CCCChhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc
Q psy549 108 AYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK 169 (253)
Q Consensus 108 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 169 (253)
+.++...+...++.+|++++|+|+.+....+... ++..+.. .++|+++|+||+|+...
T Consensus 85 ~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~~~~~~---~~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 85 HVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSET-VWRQANR---YEVPRIAFVNKMDKTGA 142 (689)
T ss_pred CcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHH-HHHHHHH---cCCCEEEEEECCCCCCC
Confidence 9999888888999999999999999876554433 3333332 45899999999998864
No 262
>KOG0077|consensus
Probab=99.50 E-value=9.9e-14 Score=101.43 Aligned_cols=159 Identities=18% Similarity=0.247 Sum_probs=115.5
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEE
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAF 125 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 125 (253)
....-|++|+|-.|+|||||++-|.+++.....+ +-.+....+.+ .+ ++++-+|.+|+..-+..|..++..+|++
T Consensus 17 ~kK~gKllFlGLDNAGKTTLLHMLKdDrl~qhvP--TlHPTSE~l~I-g~--m~ftt~DLGGH~qArr~wkdyf~~v~~i 91 (193)
T KOG0077|consen 17 YKKFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVP--TLHPTSEELSI-GG--MTFTTFDLGGHLQARRVWKDYFPQVDAI 91 (193)
T ss_pred hccCceEEEEeecCCchhhHHHHHccccccccCC--CcCCChHHhee-cC--ceEEEEccccHHHHHHHHHHHHhhhcee
Confidence 4566799999999999999999999888643221 22334445555 33 5789999999999899999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEecCCCCCccccHHHHHHHHHh---------------cCCCcEE
Q psy549 126 VLVYAVDDASTWDVVKDLREQIVNKR-GLMVPIVVVGNKCELEFKDVRREIAETIALY---------------DWQCGFV 189 (253)
Q Consensus 126 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~---------------~~~~~~~ 189 (253)
++.+|+.|.+-|.+....+..+.... -...|+++.+||+|.+.+...++..-.+... ...+.++
T Consensus 92 v~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evf 171 (193)
T KOG0077|consen 92 VYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVF 171 (193)
T ss_pred EeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCCCeEEEE
Confidence 99999999998887666555555532 3568999999999998864222222211110 0113467
Q ss_pred EeccCCCCCHHHHHHHHHHH
Q psy549 190 ECSAKENYNIVQVFKELLAQ 209 (253)
Q Consensus 190 ~~Sa~~~~~i~~l~~~l~~~ 209 (253)
.||...+.+--+.|.|+...
T Consensus 172 mcsi~~~~gy~e~fkwl~qy 191 (193)
T KOG0077|consen 172 MCSIVRKMGYGEGFKWLSQY 191 (193)
T ss_pred EEEEEccCccceeeeehhhh
Confidence 88998888888888777653
No 263
>KOG1490|consensus
Probab=99.47 E-value=3.2e-13 Score=114.81 Aligned_cols=165 Identities=18% Similarity=0.165 Sum_probs=122.5
Q ss_pred CCCCcceEEEECCCCCCHHHHHHHHHhCCC-CCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCCh---------hh
Q psy549 45 LQKDKRRVVVMGGARVGKSSIISQFLYDRF-ISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFP---------AM 114 (253)
Q Consensus 45 ~~~~~~~I~iiG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~---------~~ 114 (253)
...+....+++|-|+||||||+|.+..... +..|..|+...+.+.+.+ ....+++.||||.-+.. ..
T Consensus 164 IDp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dy---kYlrwQViDTPGILD~plEdrN~IEmqs 240 (620)
T KOG1490|consen 164 IDPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDY---KYLRWQVIDTPGILDRPEEDRNIIEMQI 240 (620)
T ss_pred CCCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhh---heeeeeecCCccccCcchhhhhHHHHHH
Confidence 355677899999999999999999987664 788888988888777655 55788999999954421 11
Q ss_pred HHHhcccCCEEEEEEECCC--hhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc----cccHHHHHHHHHhcCCCcE
Q psy549 115 RELSISTADAFVLVYAVDD--ASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK----DVRREIAETIALYDWQCGF 188 (253)
Q Consensus 115 ~~~~~~~~d~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~ 188 (253)
.....+.-.+++|+.|++. +-|......++..+.... .+.|.|+|+||+|+... +..++..+.+.. ..++++
T Consensus 241 ITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLF-aNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~-~~~v~v 318 (620)
T KOG1490|consen 241 ITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLF-ANKVTILVLNKIDAMRPEDLDQKNQELLQTIID-DGNVKV 318 (620)
T ss_pred HHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHh-cCCceEEEeecccccCccccCHHHHHHHHHHHh-ccCceE
Confidence 2224455678999999975 455555555665555544 46899999999998665 333444555555 566899
Q ss_pred EEeccCCCCCHHHHHHHHHHHHHHhc
Q psy549 189 VECSAKENYNIVQVFKELLAQAKVQY 214 (253)
Q Consensus 189 ~~~Sa~~~~~i~~l~~~l~~~~~~~~ 214 (253)
+++|..+..|+.++-...++.++..+
T Consensus 319 ~~tS~~~eegVm~Vrt~ACe~LLa~R 344 (620)
T KOG1490|consen 319 VQTSCVQEEGVMDVRTTACEALLAAR 344 (620)
T ss_pred EEecccchhceeeHHHHHHHHHHHHH
Confidence 99999999999999988888776643
No 264
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.47 E-value=6.9e-13 Score=117.84 Aligned_cols=118 Identities=15% Similarity=0.245 Sum_probs=80.9
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHh--CCCCC--Cc------cccc----------e-eeeeeeEEcCCCcEEEEEEEeC
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLY--DRFIS--RY------KETV----------E-ELHRGEYELPDGAQLTLDILDT 105 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~--~~~~~--~~------~~t~----------~-~~~~~~~~~~~~~~~~~~l~D~ 105 (253)
....+|+|+|++++|||||+++|+. +.+.. .. ..+. . ........+ +...+.+.+|||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~-~~~~~~inliDT 87 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQF-PYRDCLVNLLDT 87 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEE-eeCCeEEEEEEC
Confidence 4567999999999999999999863 21110 00 0000 0 222223334 445678999999
Q ss_pred CCCCCChhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc
Q psy549 106 SGAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK 169 (253)
Q Consensus 106 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 169 (253)
||+..|.......++.+|++|+|+|+.+... .....++..... .++|+++++||+|+...
T Consensus 88 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~---~~~PiivviNKiD~~~~ 147 (527)
T TIGR00503 88 PGHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTRL---RDTPIFTFMNKLDRDIR 147 (527)
T ss_pred CChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHHh---cCCCEEEEEECccccCC
Confidence 9999888877888999999999999987532 122334443322 45899999999998653
No 265
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.47 E-value=4.3e-12 Score=99.47 Aligned_cols=158 Identities=16% Similarity=0.208 Sum_probs=96.7
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCCC-CCC--ccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChh----hH-------
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDRF-ISR--YKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPA----MR------- 115 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~~-~~~--~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~----~~------- 115 (253)
++|+++|.+|+|||||+|.+++... ... ..+.+.........+ ++. .+.++||||..+... ..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~-~~~--~i~viDTPG~~d~~~~~~~~~~~i~~~~ 77 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVW-DGR--RVNVIDTPGLFDTSVSPEQLSKEIVRCL 77 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEE-CCe--EEEEEECcCCCCccCChHHHHHHHHHHH
Confidence 4799999999999999999998764 222 224445555555555 443 678999999665421 11
Q ss_pred HHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCC--CCCEEEEEecCCCCCccc-------cHHHHHHHHHhcCCC
Q psy549 116 ELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGL--MVPIVVVGNKCELEFKDV-------RREIAETIALYDWQC 186 (253)
Q Consensus 116 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~~-------~~~~~~~~~~~~~~~ 186 (253)
.....+.|++++|.++.. .+-.. ...+..+...... -.++++|+|+.|...... .....+.+.. .++-
T Consensus 78 ~~~~~g~~~illVi~~~~-~t~~d-~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~-~c~~ 154 (196)
T cd01852 78 SLSAPGPHAFLLVVPLGR-FTEEE-EQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLE-KCGG 154 (196)
T ss_pred HhcCCCCEEEEEEEECCC-cCHHH-HHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHH-HhCC
Confidence 112456899999999886 22222 2223333332111 257889999999655321 1122233333 2344
Q ss_pred cEEEec-----cCCCCCHHHHHHHHHHHHHHh
Q psy549 187 GFVECS-----AKENYNIVQVFKELLAQAKVQ 213 (253)
Q Consensus 187 ~~~~~S-----a~~~~~i~~l~~~l~~~~~~~ 213 (253)
.++..+ +..+.++.+|++.|.+.+.+.
T Consensus 155 r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~~ 186 (196)
T cd01852 155 RYVAFNNKAKGEEQEQQVKELLAKVESMVKEN 186 (196)
T ss_pred eEEEEeCCCCcchhHHHHHHHHHHHHHHHHhc
Confidence 444444 445678999999998888763
No 266
>PRK12739 elongation factor G; Reviewed
Probab=99.47 E-value=2.8e-12 Score=118.17 Aligned_cols=116 Identities=19% Similarity=0.168 Sum_probs=80.7
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCC--CC-----C------------CccccceeeeeeeEEcCCCcEEEEEEEeCCC
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDR--FI-----S------------RYKETVEELHRGEYELPDGAQLTLDILDTSG 107 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~--~~-----~------------~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g 107 (253)
....+|+|+|++++|||||+++|+... .. . .....+.+.....+.+ + ...+.|+||||
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~-~--~~~i~liDTPG 82 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW-K--GHRINIIDTPG 82 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEE-C--CEEEEEEcCCC
Confidence 356789999999999999999998421 10 0 0112222333334444 3 35788999999
Q ss_pred CCCChhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc
Q psy549 108 AYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK 169 (253)
Q Consensus 108 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 169 (253)
+..|...+...++.+|++++|+|+.++..-... ..+..+.. .++|+++++||+|+...
T Consensus 83 ~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~i~~~~~~---~~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 83 HVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSE-TVWRQADK---YGVPRIVFVNKMDRIGA 140 (691)
T ss_pred HHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECCCCCCC
Confidence 988888888889999999999999887543332 22332332 45899999999998753
No 267
>KOG0090|consensus
Probab=99.45 E-value=1.4e-12 Score=99.49 Aligned_cols=155 Identities=19% Similarity=0.220 Sum_probs=104.3
Q ss_pred cceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcc---cCCEE
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIS---TADAF 125 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~---~~d~~ 125 (253)
.-.|+++|+.+||||+|..+|..+.....+.+. ......+.+.++ ..+++|.||+.+.+.....++. .+-++
T Consensus 38 ~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSi--epn~a~~r~gs~---~~~LVD~PGH~rlR~kl~e~~~~~~~akai 112 (238)
T KOG0090|consen 38 QNAVLLVGLSDSGKTSLFTQLITGSHRGTVTSI--EPNEATYRLGSE---NVTLVDLPGHSRLRRKLLEYLKHNYSAKAI 112 (238)
T ss_pred CCcEEEEecCCCCceeeeeehhcCCccCeeeee--ccceeeEeecCc---ceEEEeCCCcHHHHHHHHHHccccccceeE
Confidence 357999999999999999999998665544333 333334444222 2689999999998887777766 78899
Q ss_pred EEEEECCC-hhhHHHHHHHHHHHHHhc---CCCCCEEEEEecCCCCCccccHHHHHHHHH--------------------
Q psy549 126 VLVYAVDD-ASTWDVVKDLREQIVNKR---GLMVPIVVVGNKCELEFKDVRREIAETIAL-------------------- 181 (253)
Q Consensus 126 i~v~d~~~-~~s~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-------------------- 181 (253)
++|.|... .....++..++..+.... ...+|++++.||.|+......+-+.+.+.+
T Consensus 113 VFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~ 192 (238)
T KOG0090|consen 113 VFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDI 192 (238)
T ss_pred EEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccc
Confidence 99988653 223344555554444433 456899999999998765222111111110
Q ss_pred -----------------hc-CCCcEEEeccCCCCCHHHHHHHHHHH
Q psy549 182 -----------------YD-WQCGFVECSAKENYNIVQVFKELLAQ 209 (253)
Q Consensus 182 -----------------~~-~~~~~~~~Sa~~~~~i~~l~~~l~~~ 209 (253)
.. ..+.+.++|++++ +++++-+||.+.
T Consensus 193 ~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 193 AKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred cccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence 00 2345788899988 899999998764
No 268
>PTZ00258 GTP-binding protein; Provisional
Probab=99.45 E-value=4.3e-12 Score=107.95 Aligned_cols=87 Identities=17% Similarity=0.221 Sum_probs=67.1
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCCC-CCCccccceeeeeeeEEcCCCc--------------EEEEEEEeCCCCCC
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDRF-ISRYKETVEELHRGEYELPDGA--------------QLTLDILDTSGAYQ 110 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~--------------~~~~~l~D~~g~~~ 110 (253)
....++|+|+|.||||||||+|+|.+... +.+++.|+.+...+.+.++|.. +..+.++|+||...
T Consensus 18 ~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ 97 (390)
T PTZ00258 18 PGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVK 97 (390)
T ss_pred CCCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCc
Confidence 35668999999999999999999987664 6788999988888888875433 33589999999654
Q ss_pred Ch----hhH---HHhcccCCEEEEEEECC
Q psy549 111 FP----AMR---ELSISTADAFVLVYAVD 132 (253)
Q Consensus 111 ~~----~~~---~~~~~~~d~~i~v~d~~ 132 (253)
-. .+. ...++.+|++++|+|..
T Consensus 98 ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 98 GASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 22 122 22567899999999974
No 269
>PRK09866 hypothetical protein; Provisional
Probab=99.43 E-value=1e-11 Score=109.82 Aligned_cols=108 Identities=21% Similarity=0.227 Sum_probs=70.3
Q ss_pred EEEEEeCCCCCCC-----hhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCcc--c
Q psy549 99 TLDILDTSGAYQF-----PAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKD--V 171 (253)
Q Consensus 99 ~~~l~D~~g~~~~-----~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~ 171 (253)
.+.|+||||.... .......+..+|++++|+|+....+..+ ....+.+.. .....|+++|+||+|+.+.. .
T Consensus 231 QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk-~~K~~PVILVVNKIDl~dreedd 308 (741)
T PRK09866 231 QLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILA-VGQSVPLYVLVNKFDQQDRNSDD 308 (741)
T ss_pred CEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHh-cCCCCCEEEEEEcccCCCcccch
Confidence 3568999997652 2233447889999999999987544333 223333332 22235999999999986421 1
Q ss_pred cHHHHHHHH----HhcC-CCcEEEeccCCCCCHHHHHHHHHH
Q psy549 172 RREIAETIA----LYDW-QCGFVECSAKENYNIVQVFKELLA 208 (253)
Q Consensus 172 ~~~~~~~~~----~~~~-~~~~~~~Sa~~~~~i~~l~~~l~~ 208 (253)
.+.....+. .... ...++++||+.|.|++++++.|..
T Consensus 309 kE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 309 ADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 223333322 1112 346999999999999999999877
No 270
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.41 E-value=5.1e-12 Score=105.63 Aligned_cols=114 Identities=18% Similarity=0.235 Sum_probs=74.3
Q ss_pred EEEEEEEeCCCCCCChhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCcccc----
Q psy549 97 QLTLDILDTSGAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVR---- 172 (253)
Q Consensus 97 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---- 172 (253)
.+.+.|+||+|...-... ....+|.+++|.+...+....... ..+.. +.-++|+||+|+......
T Consensus 148 g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k---~gi~E-----~aDIiVVNKaDl~~~~~a~~~~ 216 (332)
T PRK09435 148 GYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIK---KGIME-----LADLIVINKADGDNKTAARRAA 216 (332)
T ss_pred CCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHH---hhhhh-----hhheEEeehhcccchhHHHHHH
Confidence 467889999997633222 466799999997755554443322 11222 234899999998764211
Q ss_pred HHHHHHHHHh-----cCCCcEEEeccCCCCCHHHHHHHHHHHHHHhcccChhhc
Q psy549 173 REIAETIALY-----DWQCGFVECSAKENYNIVQVFKELLAQAKVQYNLSPAVR 221 (253)
Q Consensus 173 ~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~~~~~~~ 221 (253)
.+....+... .|..|++.+|++++.|++++++.|.+.+...++......
T Consensus 217 ~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l~~sg~l~~ 270 (332)
T PRK09435 217 AEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAALTASGEFAA 270 (332)
T ss_pred HHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhccCChHHH
Confidence 1222222211 255789999999999999999999998876665555444
No 271
>PRK13768 GTPase; Provisional
Probab=99.41 E-value=3.4e-12 Score=103.73 Aligned_cols=112 Identities=15% Similarity=0.109 Sum_probs=71.7
Q ss_pred EEEEEeCCCCCCC---hhhHHHhccc-----CCEEEEEEECCChhhHHHH-HHHHHHHHHhcCCCCCEEEEEecCCCCCc
Q psy549 99 TLDILDTSGAYQF---PAMRELSIST-----ADAFVLVYAVDDASTWDVV-KDLREQIVNKRGLMVPIVVVGNKCELEFK 169 (253)
Q Consensus 99 ~~~l~D~~g~~~~---~~~~~~~~~~-----~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 169 (253)
.+.+||+||+.++ ...+..+++. ++++++|+|+.......+. ..++..+......++|+++|+||+|+...
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~ 177 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSE 177 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCc
Confidence 5789999998764 3333333332 8999999999664433222 22222222211256899999999998765
Q ss_pred cccHHHHH----------------------------HHHHhcCCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy549 170 DVRREIAE----------------------------TIALYDWQCGFVECSAKENYNIVQVFKELLAQA 210 (253)
Q Consensus 170 ~~~~~~~~----------------------------~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 210 (253)
.......+ .+.......+++++|++++.|+++++++|.+.+
T Consensus 178 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l 246 (253)
T PRK13768 178 EELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVF 246 (253)
T ss_pred hhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence 22221111 122223446889999999999999999998776
No 272
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=4e-12 Score=106.29 Aligned_cols=154 Identities=18% Similarity=0.274 Sum_probs=96.8
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCC--CCC------------------------Cccccce----eeeeeeEEcCCC
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDR--FIS------------------------RYKETVE----ELHRGEYELPDG 95 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~--~~~------------------------~~~~t~~----~~~~~~~~~~~~ 95 (253)
.++.++++|+|+..+|||||+-+|+-+. +.. +...+.+ ........+ ..
T Consensus 4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~f-et 82 (428)
T COG5256 4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKF-ET 82 (428)
T ss_pred CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEe-ec
Confidence 4678999999999999999999998321 110 0000000 122222223 34
Q ss_pred cEEEEEEEeCCCCCCChhhHHHhcccCCEEEEEEECCChhh---H--HHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc-
Q psy549 96 AQLTLDILDTSGAYQFPAMRELSISTADAFVLVYAVDDAST---W--DVVKDLREQIVNKRGLMVPIVVVGNKCELEFK- 169 (253)
Q Consensus 96 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~--~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~- 169 (253)
..+.|+|+|+||+..|-...-.-...||++|+|.|+.+.+. | ....+....+.... .-..+++++||.|+.+-
T Consensus 83 ~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tl-Gi~~lIVavNKMD~v~wd 161 (428)
T COG5256 83 DKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTL-GIKQLIVAVNKMDLVSWD 161 (428)
T ss_pred CCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhc-CCceEEEEEEcccccccC
Confidence 45679999999988887777777888999999999998742 1 11222222223221 12467888899998864
Q ss_pred -----cccHHHHHHHHHhcC---CCcEEEeccCCCCCHHH
Q psy549 170 -----DVRREIAETIALYDW---QCGFVECSAKENYNIVQ 201 (253)
Q Consensus 170 -----~~~~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~ 201 (253)
++..+....+...++ .++|+++|+..|.|+.+
T Consensus 162 e~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 162 EERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred HHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 222222232222223 36799999999999864
No 273
>PRK12740 elongation factor G; Reviewed
Probab=99.38 E-value=6.1e-12 Score=115.88 Aligned_cols=108 Identities=17% Similarity=0.181 Sum_probs=73.9
Q ss_pred ECCCCCCHHHHHHHHHhCCC--CC-----------Cc------cccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhH
Q psy549 55 MGGARVGKSSIISQFLYDRF--IS-----------RY------KETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMR 115 (253)
Q Consensus 55 iG~~~~GKSsLi~~l~~~~~--~~-----------~~------~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~ 115 (253)
+|++++|||||+++|+...- .. +. ...+.......+.+ ..+.+.+|||||+.++...+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~---~~~~i~liDtPG~~~~~~~~ 77 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEW---KGHKINLIDTPGHVDFTGEV 77 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEE---CCEEEEEEECCCcHHHHHHH
Confidence 69999999999999974321 00 00 00111112223333 34678999999999888888
Q ss_pred HHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc
Q psy549 116 ELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK 169 (253)
Q Consensus 116 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 169 (253)
...+..+|++++|+|+++.........| ..+.. .++|+++|+||+|+...
T Consensus 78 ~~~l~~aD~vllvvd~~~~~~~~~~~~~-~~~~~---~~~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 78 ERALRVLDGAVVVVCAVGGVEPQTETVW-RQAEK---YGVPRIIFVNKMDRAGA 127 (668)
T ss_pred HHHHHHhCeEEEEEeCCCCcCHHHHHHH-HHHHH---cCCCEEEEEECCCCCCC
Confidence 8889999999999999987665543333 22222 46899999999998643
No 274
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.38 E-value=5.2e-12 Score=98.89 Aligned_cols=103 Identities=15% Similarity=0.051 Sum_probs=65.7
Q ss_pred EEEEEEeCCCCCCChhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc--cccHHH
Q psy549 98 LTLDILDTSGAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK--DVRREI 175 (253)
Q Consensus 98 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~ 175 (253)
..+.++++.|..--..... ..+|.+|.|+|+.+..+... .+...+ ...-++++||+|+.+. ......
T Consensus 92 ~D~iiIEt~G~~l~~~~~~---~l~~~~i~vvD~~~~~~~~~--~~~~qi------~~ad~~~~~k~d~~~~~~~~~~~~ 160 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSP---ELADLTIFVIDVAAGDKIPR--KGGPGI------TRSDLLVINKIDLAPMVGADLGVM 160 (199)
T ss_pred CCEEEEECCCCCcccccch---hhhCcEEEEEEcchhhhhhh--hhHhHh------hhccEEEEEhhhccccccccHHHH
Confidence 4556778877422222211 12688999999987655321 111111 1233899999999853 222333
Q ss_pred HHHHHHhcCCCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy549 176 AETIALYDWQCGFVECSAKENYNIVQVFKELLAQAK 211 (253)
Q Consensus 176 ~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 211 (253)
.+.+.......+++++|+++|.|++++|++|.+.++
T Consensus 161 ~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 161 ERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred HHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 444444467889999999999999999999997653
No 275
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.37 E-value=1.6e-11 Score=115.54 Aligned_cols=144 Identities=19% Similarity=0.236 Sum_probs=92.8
Q ss_pred CHHHHHHHHHhCCCCC-CccccceeeeeeeEEcCCCc----------E-----EEEEEEeCCCCCCChhhHHHhcccCCE
Q psy549 61 GKSSIISQFLYDRFIS-RYKETVEELHRGEYELPDGA----------Q-----LTLDILDTSGAYQFPAMRELSISTADA 124 (253)
Q Consensus 61 GKSsLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~----------~-----~~~~l~D~~g~~~~~~~~~~~~~~~d~ 124 (253)
+||||+.++.+..... .....|...-...+...... . -.+.||||||++.|..+....+..+|+
T Consensus 473 ~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDi 552 (1049)
T PRK14845 473 HNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADL 552 (1049)
T ss_pred ccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCE
Confidence 4999999999866532 22222333333333331111 0 127899999999998888888889999
Q ss_pred EEEEEECCCh---hhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc-cc-------------cHHHHH----------
Q psy549 125 FVLVYAVDDA---STWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DV-------------RREIAE---------- 177 (253)
Q Consensus 125 ~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~-------------~~~~~~---------- 177 (253)
+++|+|+++. .+++.+. .+.. .++|+++|+||+|+... .. .+....
T Consensus 553 vlLVVDa~~Gi~~qT~e~I~----~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~ 625 (1049)
T PRK14845 553 AVLVVDINEGFKPQTIEAIN----ILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELI 625 (1049)
T ss_pred EEEEEECcccCCHhHHHHHH----HHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHh
Confidence 9999999873 3333322 2222 35899999999998642 10 011111
Q ss_pred -HHHH-------------hcCCCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy549 178 -TIAL-------------YDWQCGFVECSAKENYNIVQVFKELLAQAK 211 (253)
Q Consensus 178 -~~~~-------------~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 211 (253)
.+.. ....++++++||++|.||++++.++.....
T Consensus 626 ~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~ 673 (1049)
T PRK14845 626 GKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQ 673 (1049)
T ss_pred hHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhH
Confidence 1111 134578999999999999999988765543
No 276
>PRK00007 elongation factor G; Reviewed
Probab=99.37 E-value=1e-11 Score=114.43 Aligned_cols=142 Identities=18% Similarity=0.124 Sum_probs=91.2
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHh--CCCC-----C------------CccccceeeeeeeEEcCCCcEEEEEEEeCCC
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLY--DRFI-----S------------RYKETVEELHRGEYELPDGAQLTLDILDTSG 107 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~--~~~~-----~------------~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g 107 (253)
....+|+|+|++++|||||+++|+. +... . ....++.+.....+.+ . ...+.|+||||
T Consensus 8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~-~--~~~~~liDTPG 84 (693)
T PRK00007 8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW-K--DHRINIIDTPG 84 (693)
T ss_pred cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEE-C--CeEEEEEeCCC
Confidence 3467999999999999999999984 2110 0 0112223333334444 2 35789999999
Q ss_pred CCCChhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHHhcCC--
Q psy549 108 AYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIALYDWQ-- 185 (253)
Q Consensus 108 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-- 185 (253)
+.+|.......++.+|++++|+|+......+....|. .+.. .++|+++++||+|+.... .....+.+......
T Consensus 85 ~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~-~~~~---~~~p~iv~vNK~D~~~~~-~~~~~~~i~~~l~~~~ 159 (693)
T PRK00007 85 HVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWR-QADK---YKVPRIAFVNKMDRTGAD-FYRVVEQIKDRLGANP 159 (693)
T ss_pred cHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHH-HHHH---cCCCEEEEEECCCCCCCC-HHHHHHHHHHHhCCCe
Confidence 9888777777889999999999998775444433332 2333 457999999999988653 22233333332222
Q ss_pred -CcEEEeccCCC
Q psy549 186 -CGFVECSAKEN 196 (253)
Q Consensus 186 -~~~~~~Sa~~~ 196 (253)
...+++|+.++
T Consensus 160 ~~~~ipisa~~~ 171 (693)
T PRK00007 160 VPIQLPIGAEDD 171 (693)
T ss_pred eeEEecCccCCc
Confidence 23455666554
No 277
>KOG1532|consensus
Probab=99.36 E-value=1.1e-11 Score=98.30 Aligned_cols=167 Identities=13% Similarity=0.140 Sum_probs=96.7
Q ss_pred CCCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccce--------eeeeeeEEc----------------CC------
Q psy549 45 LQKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE--------ELHRGEYEL----------------PD------ 94 (253)
Q Consensus 45 ~~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~--------~~~~~~~~~----------------~~------ 94 (253)
....++.|+++|-.|+|||||+++|...-.....++-.. -.+...+.+ ||
T Consensus 15 ~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~Ts 94 (366)
T KOG1532|consen 15 AIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTS 94 (366)
T ss_pred cccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhh
Confidence 456678999999999999999999884222111100000 111111110 01
Q ss_pred ------------------CcEEEEEEEeCCCCCCC------hhhHHHhccc--CCEEEEEEECCC---hhhHHHHHHHHH
Q psy549 95 ------------------GAQLTLDILDTSGAYQF------PAMRELSIST--ADAFVLVYAVDD---ASTWDVVKDLRE 145 (253)
Q Consensus 95 ------------------~~~~~~~l~D~~g~~~~------~~~~~~~~~~--~d~~i~v~d~~~---~~s~~~~~~~~~ 145 (253)
...+++.++||||+.+- ...+...+.. .-++++|.|... +..|-.-..+..
T Consensus 95 LNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAc 174 (366)
T KOG1532|consen 95 LNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYAC 174 (366)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHH
Confidence 22356789999998762 1222222222 345566666533 333433222333
Q ss_pred HHHHhcCCCCCEEEEEecCCCCCccccH--------------------------HHHHHHHHhcCCCcEEEeccCCCCCH
Q psy549 146 QIVNKRGLMVPIVVVGNKCELEFKDVRR--------------------------EIAETIALYDWQCGFVECSAKENYNI 199 (253)
Q Consensus 146 ~~~~~~~~~~piilv~nK~Dl~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~Sa~~~~~i 199 (253)
.+. ...++|.++|.||+|+.+..... .+.-.+......+..+-+|+.+|.|.
T Consensus 175 Sil--yktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ 252 (366)
T KOG1532|consen 175 SIL--YKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGF 252 (366)
T ss_pred HHH--HhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcH
Confidence 333 33679999999999988762111 11111223345678899999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy549 200 VQVFKELLAQAKVQ 213 (253)
Q Consensus 200 ~~l~~~l~~~~~~~ 213 (253)
+++|..+-..+.+.
T Consensus 253 ddf~~av~~~vdEy 266 (366)
T KOG1532|consen 253 DDFFTAVDESVDEY 266 (366)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999988766553
No 278
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.36 E-value=7.4e-12 Score=115.72 Aligned_cols=117 Identities=17% Similarity=0.195 Sum_probs=80.1
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCC--CC---------CCcc-------ccce-eeeeeeEEcCCCcEEEEEEEeCCC
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDR--FI---------SRYK-------ETVE-ELHRGEYELPDGAQLTLDILDTSG 107 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~--~~---------~~~~-------~t~~-~~~~~~~~~~~~~~~~~~l~D~~g 107 (253)
....+|+|+|+.++|||||+++|+... .. .++. .|.. ........+ ++..+.+.+|||||
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~-~~~~~~i~liDTPG 95 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEY-EGNEYLINLIDTPG 95 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEee-cCCceEEEEEeCCC
Confidence 345799999999999999999998521 00 0110 1111 111112223 55668899999999
Q ss_pred CCCChhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCC
Q psy549 108 AYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEF 168 (253)
Q Consensus 108 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 168 (253)
+.+|.......++.+|++|+|+|+.+....+....|.. ... .++|+++|+||+|...
T Consensus 96 ~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~-~~~---~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 96 HVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQ-ALK---ENVKPVLFINKVDRLI 152 (720)
T ss_pred ccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHH-HHH---cCCCEEEEEEChhccc
Confidence 99998888889999999999999987543333222222 222 4578899999999864
No 279
>KOG0705|consensus
Probab=99.34 E-value=3.4e-12 Score=109.56 Aligned_cols=203 Identities=18% Similarity=0.267 Sum_probs=147.5
Q ss_pred hhcccccccccccccccccccCCCCCCCCCCCCCCCCCCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeee
Q psy549 9 DKGLQTDYRKMPGACERLRLHSLGTESTSSSGTGVGLQKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRG 88 (253)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~ 88 (253)
++.++.....+.+++.....|+++. --+++|++|+|..++|||+|+++++.+.+..+..+. ...+.+
T Consensus 2 qn~i~~~~~~~~dafvnsqewtlsr------------sipelk~givg~~~sgktalvhr~ltgty~~~e~~e-~~~~kk 68 (749)
T KOG0705|consen 2 QNQIRESVDSIEDAFVNSQEWTLSR------------SIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPE-GGRFKK 68 (749)
T ss_pred cchhhhchhhHHHhhccccceeeec------------ccchhheeeeecccCCceeeeeeeccceeccccCCc-Ccccee
Confidence 5667777888888888887777664 346799999999999999999999999986554333 345555
Q ss_pred eEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEecCCCC
Q psy549 89 EYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKR-GLMVPIVVVGNKCELE 167 (253)
Q Consensus 89 ~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~ 167 (253)
++.+ +++..-+.+.|.+|.. ...|...+|++|+||.+.+..+|+.+..+...+..+. ...+|+++++++.-..
T Consensus 69 E~vv-~gqs~lLlirdeg~~~-----~aQft~wvdavIfvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS 142 (749)
T KOG0705|consen 69 EVVV-DGQSHLLLIRDEGGHP-----DAQFCQWVDAVVFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHIS 142 (749)
T ss_pred eEEe-eccceEeeeecccCCc-----hhhhhhhccceEEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhh
Confidence 6656 7777778888888732 2445677999999999999999998877666555432 3558889888875432
Q ss_pred Cc----cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHHHHHHHHHHhcccChhhccccccCCCCc
Q psy549 168 FK----DVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQAKVQYNLSPAVRRRRQSLPNYI 231 (253)
Q Consensus 168 ~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (253)
.. ..........++ ...+.+|++++.+|.+++.+|..++.++....+.....-.+...++.++
T Consensus 143 ~~~~rv~~da~~r~l~~~-~krcsy~et~atyGlnv~rvf~~~~~k~i~~~~~qq~~~~~~~s~~~s~ 209 (749)
T KOG0705|consen 143 AKRPRVITDDRARQLSAQ-MKRCSYYETCATYGLNVERVFQEVAQKIVQLRKYQQLPASSSKSLPESP 209 (749)
T ss_pred cccccccchHHHHHHHHh-cCccceeecchhhhhhHHHHHHHHHHHHHHHHhhhhcccccccccccCC
Confidence 22 344444444555 7778899999999999999999999887666444443344444444444
No 280
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.34 E-value=4.5e-11 Score=95.56 Aligned_cols=141 Identities=13% Similarity=0.074 Sum_probs=83.9
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEE
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAF 125 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 125 (253)
......|+|+|.+|+|||||++.+....-.... ....+.+.+.......+.++|+||.. .......+.+|++
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~-----~~~~g~i~i~~~~~~~i~~vDtPg~~---~~~l~~ak~aDvV 107 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNI-----SDIKGPITVVTGKKRRLTFIECPNDI---NAMIDIAKVADLV 107 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccCcc-----ccccccEEEEecCCceEEEEeCCchH---HHHHHHHHhcCEE
Confidence 345688999999999999999999864211111 01111111111233467899999853 2223356889999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCE-EEEEecCCCCCcc-----ccHHHHHHHH-HhcCCCcEEEeccCCCCC
Q psy549 126 VLVYAVDDASTWDVVKDLREQIVNKRGLMVPI-VVVGNKCELEFKD-----VRREIAETIA-LYDWQCGFVECSAKENYN 198 (253)
Q Consensus 126 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl~~~~-----~~~~~~~~~~-~~~~~~~~~~~Sa~~~~~ 198 (253)
++|+|+........ ..++..+.. .++|. ++|+||.|+.+.. ...++.+.+. ......+++.+||+++-.
T Consensus 108 llviDa~~~~~~~~-~~i~~~l~~---~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~~ 183 (225)
T cd01882 108 LLLIDASFGFEMET-FEFLNILQV---HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHGR 183 (225)
T ss_pred EEEEecCcCCCHHH-HHHHHHHHH---cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCCC
Confidence 99999986544332 223333322 34674 5599999986431 1112222222 123457899999998753
No 281
>KOG1486|consensus
Probab=99.33 E-value=8.3e-11 Score=92.22 Aligned_cols=172 Identities=19% Similarity=0.264 Sum_probs=123.3
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCCC-CCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHH-------H
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDRF-ISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRE-------L 117 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~-------~ 117 (253)
.+...+|+++|-|.+|||||+..+..-.. ...|..|+.....+.+.+ ++. .+++.|.||.-+-.+... .
T Consensus 59 KsGdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y-~ga--~IQllDLPGIieGAsqgkGRGRQvia 135 (364)
T KOG1486|consen 59 KSGDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHY-NGA--NIQLLDLPGIIEGASQGKGRGRQVIA 135 (364)
T ss_pred ccCCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEe-cCc--eEEEecCcccccccccCCCCCceEEE
Confidence 56678999999999999999999987553 678889999999999999 664 679999999766443332 2
Q ss_pred hcccCCEEEEEEECCChhhHHH-HHHHHHHHHHh----------------------------------------------
Q psy549 118 SISTADAFVLVYAVDDASTWDV-VKDLREQIVNK---------------------------------------------- 150 (253)
Q Consensus 118 ~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~---------------------------------------------- 150 (253)
..+-+|.+++|.|++..+--.. ++..++.+-..
T Consensus 136 vArtaDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Na 215 (364)
T KOG1486|consen 136 VARTADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNA 215 (364)
T ss_pred EeecccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccc
Confidence 5667999999999987533221 22222211110
Q ss_pred -------------------cCCCCCEEEEEecCCCCCccccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy549 151 -------------------RGLMVPIVVVGNKCELEFKDVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQAK 211 (253)
Q Consensus 151 -------------------~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 211 (253)
..-.++.+.|-||+| ++..+....++. ..+. +.+|.....|++.+++.|++.+
T Consensus 216 evl~ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID----~vs~eevdrlAr-~Pns--vViSC~m~lnld~lle~iWe~l- 287 (364)
T KOG1486|consen 216 EVLFREDCTVDDFIDVIEGNRVYIKCLYVYNKID----QVSIEEVDRLAR-QPNS--VVISCNMKLNLDRLLERIWEEL- 287 (364)
T ss_pred eEEEecCCChHHHHHHHhccceEEEEEEEeeccc----eecHHHHHHHhc-CCCc--EEEEeccccCHHHHHHHHHHHh-
Confidence 001257788899998 778888888887 4443 4566667799999999999988
Q ss_pred HhcccChhhccccccCCCCc
Q psy549 212 VQYNLSPAVRRRRQSLPNYI 231 (253)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~ 231 (253)
.+.....+++...|...
T Consensus 288 ---~L~rvYtKk~g~~Pdfd 304 (364)
T KOG1486|consen 288 ---NLVRVYTKKKGQRPDFD 304 (364)
T ss_pred ---ceEEEEecCCCCCCCCC
Confidence 34455566666666655
No 282
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.31 E-value=7.2e-11 Score=95.43 Aligned_cols=121 Identities=21% Similarity=0.211 Sum_probs=75.1
Q ss_pred CCCCcceEEEECCCCCCHHHHHHHHHhCCC--CCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChh--hH-----
Q psy549 45 LQKDKRRVVVMGGARVGKSSIISQFLYDRF--ISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPA--MR----- 115 (253)
Q Consensus 45 ~~~~~~~I~iiG~~~~GKSsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--~~----- 115 (253)
.....++|+++|.+|+|||||+|+|++... .....+++.......... ++ ..+.+|||||..+... ..
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~-~g--~~i~vIDTPGl~~~~~~~~~~~~~~ 103 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTV-DG--FKLNIIDTPGLLESVMDQRVNRKIL 103 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEE-CC--eEEEEEECCCcCcchhhHHHHHHHH
Confidence 346779999999999999999999999764 333434444444444444 44 4679999999776521 11
Q ss_pred ---HHhcc--cCCEEEEEEECCChh-hHHHHHHHHHHHHHhcCC--CCCEEEEEecCCCCCc
Q psy549 116 ---ELSIS--TADAFVLVYAVDDAS-TWDVVKDLREQIVNKRGL--MVPIVVVGNKCELEFK 169 (253)
Q Consensus 116 ---~~~~~--~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~ 169 (253)
..++. ..|++++|..++... ...+ ...+..+...... -.++++|.||+|....
T Consensus 104 ~~I~~~l~~~~idvIL~V~rlD~~r~~~~d-~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p 164 (249)
T cd01853 104 SSIKRYLKKKTPDVVLYVDRLDMYRRDYLD-LPLLRAITDSFGPSIWRNAIVVLTHAASSPP 164 (249)
T ss_pred HHHHHHHhccCCCEEEEEEcCCCCCCCHHH-HHHHHHHHHHhChhhHhCEEEEEeCCccCCC
Confidence 11222 568888887666432 2221 2233333332211 1579999999997543
No 283
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.30 E-value=1.4e-10 Score=97.64 Aligned_cols=83 Identities=22% Similarity=0.268 Sum_probs=64.1
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCCC-CCCccccceeeeeeeEEcCCCc--------------EEEEEEEeCCCCCCCh--
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDRF-ISRYKETVEELHRGEYELPDGA--------------QLTLDILDTSGAYQFP-- 112 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~--------------~~~~~l~D~~g~~~~~-- 112 (253)
++|+|+|.||||||||+|++++... +.+++.||.+...+.+.+++.. +..+.++|+||...-.
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 7899999999999999999998764 5778889988888888775531 1358999999965422
Q ss_pred --hhHH---HhcccCCEEEEEEECC
Q psy549 113 --AMRE---LSISTADAFVLVYAVD 132 (253)
Q Consensus 113 --~~~~---~~~~~~d~~i~v~d~~ 132 (253)
.+.. ..++.+|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 1222 2467899999999984
No 284
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.30 E-value=2.8e-11 Score=87.35 Aligned_cols=113 Identities=26% Similarity=0.213 Sum_probs=78.9
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCCCCCCcc-ccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEE
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDRFISRYK-ETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLV 128 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 128 (253)
+||+++|+.|+|||+|+.++....+...+. ++.. +.......++.++.+++|
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v 53 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC 53 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence 589999999999999999997776643222 2211 222234456778999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHH
Q psy549 129 YAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIV 200 (253)
Q Consensus 129 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 200 (253)
|+..+..++..+ |...+......++|.++++||.|+... ....+. ...++++|++++.|+.
T Consensus 54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~~---------~~~~~~~s~~~~~~~~ 115 (124)
T smart00010 54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQVATEE---------GLEFAETSAKTPEEGE 115 (124)
T ss_pred EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHHH---------HHHHHHHhCCCcchhh
Confidence 999999998765 766666544566899999999997432 222211 1235678889998874
No 285
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.30 E-value=2.3e-12 Score=103.52 Aligned_cols=112 Identities=18% Similarity=0.115 Sum_probs=59.2
Q ss_pred EEEEEeCCCCCCChhhHHHhc--------ccCCEEEEEEECCChhh-HHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc
Q psy549 99 TLDILDTSGAYQFPAMRELSI--------STADAFVLVYAVDDAST-WDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK 169 (253)
Q Consensus 99 ~~~l~D~~g~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 169 (253)
.+.++|||||.++-..+.... ...-+++++.|..-..+ ...+..++..+......+.|.+.|+||+|+...
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 678999999998755554422 23457778888753322 112233333333333356899999999999872
Q ss_pred c------------c--------cHHHHHHHHHh---cCCC-cEEEeccCCCCCHHHHHHHHHHHH
Q psy549 170 D------------V--------RREIAETIALY---DWQC-GFVECSAKENYNIVQVFKELLAQA 210 (253)
Q Consensus 170 ~------------~--------~~~~~~~~~~~---~~~~-~~~~~Sa~~~~~i~~l~~~l~~~~ 210 (253)
. . .....+.++.. .... .++++|+.++.++.+++..+-+.+
T Consensus 172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 1 0 01111222221 2233 799999999999999998876654
No 286
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.29 E-value=1.5e-11 Score=99.37 Aligned_cols=96 Identities=14% Similarity=0.104 Sum_probs=78.2
Q ss_pred CCCChhhHHHhcccCCEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCC
Q psy549 108 AYQFPAMRELSISTADAFVLVYAVDDAS-TWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQ 185 (253)
Q Consensus 108 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~ 185 (253)
.+++..+...+++++|++++|||+.++. ++..+..|+..+.. .++|+++|+||+||.+. ....+..+.+.. .+
T Consensus 23 ~eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~--~g 97 (245)
T TIGR00157 23 AERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLDDEDMEKEQLDIYRN--IG 97 (245)
T ss_pred ecccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCCCHHHHHHHHHHHHH--CC
Confidence 3677778888999999999999999877 89999999876654 56899999999999654 333344555543 56
Q ss_pred CcEEEeccCCCCCHHHHHHHHHH
Q psy549 186 CGFVECSAKENYNIVQVFKELLA 208 (253)
Q Consensus 186 ~~~~~~Sa~~~~~i~~l~~~l~~ 208 (253)
.+++++||++|.|++++|+.+..
T Consensus 98 ~~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 98 YQVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred CeEEEEecCCchhHHHHHhhhcC
Confidence 78999999999999999998864
No 287
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.27 E-value=1.4e-10 Score=94.73 Aligned_cols=81 Identities=21% Similarity=0.263 Sum_probs=61.9
Q ss_pred EEEECCCCCCHHHHHHHHHhCCC-CCCccccceeeeeeeEEcCCCc--------------EEEEEEEeCCCCCCCh----
Q psy549 52 VVVMGGARVGKSSIISQFLYDRF-ISRYKETVEELHRGEYELPDGA--------------QLTLDILDTSGAYQFP---- 112 (253)
Q Consensus 52 I~iiG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~--------------~~~~~l~D~~g~~~~~---- 112 (253)
|+|+|.||||||||+|++++... +.+++.+|.+...+.+.+++.. +..++++|+||..+-.
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 58999999999999999999764 6788889888888888775532 2358999999965422
Q ss_pred hhHHH---hcccCCEEEEEEECC
Q psy549 113 AMREL---SISTADAFVLVYAVD 132 (253)
Q Consensus 113 ~~~~~---~~~~~d~~i~v~d~~ 132 (253)
.+... .++.+|++++|+|+.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 22222 467899999999874
No 288
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.26 E-value=1.1e-10 Score=98.84 Aligned_cols=161 Identities=17% Similarity=0.256 Sum_probs=111.4
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCC--CCCC------------ccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCCh
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDR--FISR------------YKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFP 112 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~--~~~~------------~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~ 112 (253)
+--+|+||-+..-|||||+..|+.+. |... .....+ ....+...+ +...+++.++||||+-.|.
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav-~~~~~~INIvDTPGHADFG 82 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAV-NYNGTRINIVDTPGHADFG 82 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEecccee-ecCCeEEEEecCCCcCCcc
Confidence 34689999999999999999999643 3110 000001 333343334 4455789999999999999
Q ss_pred hhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc---cccHHHHHHHHH-----hcC
Q psy549 113 AMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK---DVRREIAETIAL-----YDW 184 (253)
Q Consensus 113 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~---~~~~~~~~~~~~-----~~~ 184 (253)
...+..+.=+|++++++|+.+..--+. ...+...+. .+.+.++|+||+|.++. .+..+..+.|.. ...
T Consensus 83 GEVERvl~MVDgvlLlVDA~EGpMPQT-rFVlkKAl~---~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQL 158 (603)
T COG1217 83 GEVERVLSMVDGVLLLVDASEGPMPQT-RFVLKKALA---LGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQL 158 (603)
T ss_pred chhhhhhhhcceEEEEEEcccCCCCch-hhhHHHHHH---cCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhC
Confidence 999999999999999999998643221 222222222 45677889999999887 344444555543 245
Q ss_pred CCcEEEeccCCCC----------CHHHHHHHHHHHHHHh
Q psy549 185 QCGFVECSAKENY----------NIVQVFKELLAQAKVQ 213 (253)
Q Consensus 185 ~~~~~~~Sa~~~~----------~i~~l~~~l~~~~~~~ 213 (253)
..|+++.|+..|. ++.-+|+.|++.+..-
T Consensus 159 dFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P 197 (603)
T COG1217 159 DFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAP 197 (603)
T ss_pred CCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCC
Confidence 6899999998875 4777888888887543
No 289
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.25 E-value=1.3e-10 Score=97.44 Aligned_cols=117 Identities=17% Similarity=0.089 Sum_probs=78.8
Q ss_pred EEEEEEEeCCCCCCChhhHHHhcccCCEEEEEEECCCh----------hhHHHHHHHHHHHHHh-cCCCCCEEEEEecCC
Q psy549 97 QLTLDILDTSGAYQFPAMRELSISTADAFVLVYAVDDA----------STWDVVKDLREQIVNK-RGLMVPIVVVGNKCE 165 (253)
Q Consensus 97 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~-~~~~~piilv~nK~D 165 (253)
.+.+.+||++|+...+..|..++.+++++++|+|+++- ..+......+..+... .-.++|+++++||.|
T Consensus 160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D 239 (317)
T cd00066 160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKD 239 (317)
T ss_pred ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChH
Confidence 46788999999999999999999999999999999873 2233322233333332 224689999999999
Q ss_pred CCCcc------------------ccHH----HHHHHHHh----cCCCcEEEeccCCCCCHHHHHHHHHHHHHHh
Q psy549 166 LEFKD------------------VRRE----IAETIALY----DWQCGFVECSAKENYNIVQVFKELLAQAKVQ 213 (253)
Q Consensus 166 l~~~~------------------~~~~----~~~~~~~~----~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 213 (253)
+.... .... +...+... ...+.+..|+|.+-.++..+|+.+.+.+...
T Consensus 240 ~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~ 313 (317)
T cd00066 240 LFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQN 313 (317)
T ss_pred HHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHH
Confidence 64320 0111 11222221 1234456688888889999999888887665
No 290
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.25 E-value=1.4e-10 Score=95.32 Aligned_cols=119 Identities=22% Similarity=0.272 Sum_probs=71.7
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCCC--CCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHH---hc-
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDRF--ISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMREL---SI- 119 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~---~~- 119 (253)
....++|+++|.+|+||||++|+|++... .+...+++.......... ++ ..+.++||||..+....... .+
T Consensus 35 ~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~-~G--~~l~VIDTPGL~d~~~~~e~~~~~ik 111 (313)
T TIGR00991 35 DVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTR-AG--FTLNIIDTPGLIEGGYINDQAVNIIK 111 (313)
T ss_pred cccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEE-CC--eEEEEEECCCCCchHHHHHHHHHHHH
Confidence 45679999999999999999999998763 333333322222223333 43 57899999998765322211 11
Q ss_pred -----ccCCEEEEEEECCChhhHHHHHHHHHHHHHhcC--CCCCEEEEEecCCCC
Q psy549 120 -----STADAFVLVYAVDDASTWDVVKDLREQIVNKRG--LMVPIVVVGNKCELE 167 (253)
Q Consensus 120 -----~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~ 167 (253)
...|++++|..++.......-...+..+..... --.+.++|+|+.|..
T Consensus 112 ~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~ 166 (313)
T TIGR00991 112 RFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFS 166 (313)
T ss_pred HHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccC
Confidence 258999999765532111111222222222211 125789999999965
No 291
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.25 E-value=1.3e-11 Score=98.12 Aligned_cols=160 Identities=18% Similarity=0.135 Sum_probs=91.4
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhC------CC-----CCCccccc----------------eeeeeeeEEcC-------
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYD------RF-----ISRYKETV----------------EELHRGEYELP------- 93 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~------~~-----~~~~~~t~----------------~~~~~~~~~~~------- 93 (253)
+.+.|+|.|+||+|||||++.|... +. .+..+.|. ...|...+..-
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls 107 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS 107 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence 4589999999999999999998821 10 01111111 01111111110
Q ss_pred ----------CCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEec
Q psy549 94 ----------DGAQLTLDILDTSGAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNK 163 (253)
Q Consensus 94 ----------~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK 163 (253)
+.-.+.+.|++|.|.-.-. .....-+|.+++|..+.-.+..+-++.-+-++ +=++|+||
T Consensus 108 ~~t~~~v~ll~aaG~D~IiiETVGvGQsE---~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi--------aDi~vVNK 176 (266)
T PF03308_consen 108 RATRDAVRLLDAAGFDVIIIETVGVGQSE---VDIADMADTVVLVLVPGLGDEIQAIKAGIMEI--------ADIFVVNK 176 (266)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEEESSSTHH---HHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH---------SEEEEE-
T ss_pred HhHHHHHHHHHHcCCCEEEEeCCCCCccH---HHHHHhcCeEEEEecCCCccHHHHHhhhhhhh--------ccEEEEeC
Confidence 1113667788887743221 22345699999999998776655544433333 33899999
Q ss_pred CCCCCccccHHHHHHHHH------hcCCCcEEEeccCCCCCHHHHHHHHHHHHHHhcccCh
Q psy549 164 CELEFKDVRREIAETIAL------YDWQCGFVECSAKENYNIVQVFKELLAQAKVQYNLSP 218 (253)
Q Consensus 164 ~Dl~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~~~~ 218 (253)
+|.+.........+..-. ..|..|++.|||.++.|++++++.|.+..........
T Consensus 177 aD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~l~~sg~ 237 (266)
T PF03308_consen 177 ADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDYLKESGE 237 (266)
T ss_dssp -SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHHHHHTTH
T ss_pred CChHHHHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHHcch
Confidence 996655333322222221 2456799999999999999999999886655544443
No 292
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.25 E-value=1.9e-10 Score=92.74 Aligned_cols=159 Identities=18% Similarity=0.111 Sum_probs=100.0
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCCC-----------CCCccccce----------------eeeeeeEEc--------
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDRF-----------ISRYKETVE----------------ELHRGEYEL-------- 92 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~~-----------~~~~~~t~~----------------~~~~~~~~~-------- 92 (253)
+...|.|.|.||+|||||+..|...-. .+..+.|.+ ..+...+..
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGlS 129 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGLS 129 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhhh
Confidence 456999999999999999999872110 111111211 111111110
Q ss_pred ---------CCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEec
Q psy549 93 ---------PDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNK 163 (253)
Q Consensus 93 ---------~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK 163 (253)
.+.-.+.+.|++|.|.-.-.. ....-+|.+++|.-..-.+..+-++.-+-++. =++|+||
T Consensus 130 ~at~~~i~~ldAaG~DvIIVETVGvGQsev---~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEia--------Di~vINK 198 (323)
T COG1703 130 RATREAIKLLDAAGYDVIIVETVGVGQSEV---DIANMADTFLVVMIPGAGDDLQGIKAGIMEIA--------DIIVINK 198 (323)
T ss_pred HHHHHHHHHHHhcCCCEEEEEecCCCcchh---HHhhhcceEEEEecCCCCcHHHHHHhhhhhhh--------heeeEec
Confidence 023346778899987543322 23345899999998877766666555444333 3899999
Q ss_pred CCCCCccccHHHH----H----HHHHhcCCCcEEEeccCCCCCHHHHHHHHHHHHHHhcccC
Q psy549 164 CELEFKDVRREIA----E----TIALYDWQCGFVECSAKENYNIVQVFKELLAQAKVQYNLS 217 (253)
Q Consensus 164 ~Dl~~~~~~~~~~----~----~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~~~ 217 (253)
.|....+...... . ......|..|++.|||.+|.|++++++.+.+.........
T Consensus 199 aD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~~~sg 260 (323)
T COG1703 199 ADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFLTESG 260 (323)
T ss_pred cChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHHHhcc
Confidence 9966542111111 1 1233468889999999999999999999999876654443
No 293
>KOG3905|consensus
Probab=99.23 E-value=6.8e-10 Score=90.19 Aligned_cols=165 Identities=16% Similarity=0.219 Sum_probs=110.9
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcC-CCcEEEEEEEeCCCCCCChhhHHHhccc---
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELP-DGAQLTLDILDTSGAYQFPAMRELSIST--- 121 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~--- 121 (253)
....-+|+++|+.++||||||.+|.+.+-+.. .....+.+-.+.-. .....++.+|-..|.-....+....+..
T Consensus 49 lpsgk~VlvlGdn~sGKtsLi~klqg~e~~Kk--gsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~ 126 (473)
T KOG3905|consen 49 LPSGKNVLVLGDNGSGKTSLISKLQGSETVKK--GSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSL 126 (473)
T ss_pred CCCCCeEEEEccCCCchhHHHHHhhcccccCC--CCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCc
Confidence 34567899999999999999999998663211 11112222222110 1223456788877766666665554433
Q ss_pred C-CEEEEEEECCChh-hHHHHHHHHHHHHHh-------------------------------------------------
Q psy549 122 A-DAFVLVYAVDDAS-TWDVVKDLREQIVNK------------------------------------------------- 150 (253)
Q Consensus 122 ~-d~~i~v~d~~~~~-s~~~~~~~~~~~~~~------------------------------------------------- 150 (253)
+ -.+|++.|.+++. -++.+.+|..-+..+
T Consensus 127 aetlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de 206 (473)
T KOG3905|consen 127 AETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADE 206 (473)
T ss_pred cceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccc
Confidence 2 3778889999984 455677776554442
Q ss_pred ------------cCCCCCEEEEEecCCCCCc------------cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHHHH
Q psy549 151 ------------RGLMVPIVVVGNKCELEFK------------DVRREIAETIALYDWQCGFVECSAKENYNIVQVFKEL 206 (253)
Q Consensus 151 ------------~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 206 (253)
...++|+++|++|+|.... ...+..++.|+. ..+...+++|++...||+-++.+|
T Consensus 207 ~~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCL-r~GaaLiyTSvKE~KNidllyKYi 285 (473)
T KOG3905|consen 207 HVLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCL-RYGAALIYTSVKETKNIDLLYKYI 285 (473)
T ss_pred ccccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHH-HcCceeEEeecccccchHHHHHHH
Confidence 1236899999999997322 233455677777 678889999999999999999999
Q ss_pred HHHHHHh
Q psy549 207 LAQAKVQ 213 (253)
Q Consensus 207 ~~~~~~~ 213 (253)
..++...
T Consensus 286 vhr~yG~ 292 (473)
T KOG3905|consen 286 VHRSYGF 292 (473)
T ss_pred HHHhcCc
Confidence 9877543
No 294
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.22 E-value=1.3e-10 Score=88.11 Aligned_cols=80 Identities=15% Similarity=0.032 Sum_probs=57.1
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCcc--ccHHHHHHHHHhcCCCcEEEeccCCCCCHH
Q psy549 123 DAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKD--VRREIAETIALYDWQCGFVECSAKENYNIV 200 (253)
Q Consensus 123 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 200 (253)
+.-|+|+|++.++... .+-...+. ..=++|+||.|+.... ..+.+.+...+.+...+++++|+++|.|++
T Consensus 119 ~~~v~VidvteGe~~P--~K~gP~i~------~aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~ 190 (202)
T COG0378 119 HLRVVVIDVTEGEDIP--RKGGPGIF------KADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLD 190 (202)
T ss_pred ceEEEEEECCCCCCCc--ccCCCcee------EeeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHH
Confidence 3888899988764311 11011111 1338999999998872 336666777777889999999999999999
Q ss_pred HHHHHHHHHH
Q psy549 201 QVFKELLAQA 210 (253)
Q Consensus 201 ~l~~~l~~~~ 210 (253)
++++|+...+
T Consensus 191 ~~~~~i~~~~ 200 (202)
T COG0378 191 EWLRFIEPQA 200 (202)
T ss_pred HHHHHHHhhc
Confidence 9999987654
No 295
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.21 E-value=8.7e-10 Score=93.16 Aligned_cols=154 Identities=16% Similarity=0.221 Sum_probs=95.1
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhC----C-------------CCCCccc----cceee----eeeeEEcCCCcEEEEEE
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYD----R-------------FISRYKE----TVEEL----HRGEYELPDGAQLTLDI 102 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~----~-------------~~~~~~~----t~~~~----~~~~~~~~~~~~~~~~l 102 (253)
..+.|+|+|+.++|||||+|+|++. . ++++..+ |+... ..-.+...++...++.+
T Consensus 16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl 95 (492)
T TIGR02836 16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL 95 (492)
T ss_pred CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence 5689999999999999999999976 2 2233333 33222 22344444666788999
Q ss_pred EeCCCCCCC--------hh---------------------hHHHhcc-cCCEEEEEE-ECC----ChhhH-HHHHHHHHH
Q psy549 103 LDTSGAYQF--------PA---------------------MRELSIS-TADAFVLVY-AVD----DASTW-DVVKDLREQ 146 (253)
Q Consensus 103 ~D~~g~~~~--------~~---------------------~~~~~~~-~~d~~i~v~-d~~----~~~s~-~~~~~~~~~ 146 (253)
+||+|-..- .. .+...+. .+++.|+|. |.+ .++.+ ..-..++..
T Consensus 96 IDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~e 175 (492)
T TIGR02836 96 VDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEE 175 (492)
T ss_pred EECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHH
Confidence 999993221 01 0223455 789999988 653 11122 223456666
Q ss_pred HHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHHhcCCCcEEEeccCC--CCCHHHHHHHH
Q psy549 147 IVNKRGLMVPIVVVGNKCELEFKDVRREIAETIALYDWQCGFVECSAKE--NYNIVQVFKEL 206 (253)
Q Consensus 147 ~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~--~~~i~~l~~~l 206 (253)
+.. .++|+++|+|+.|-.. ....+..+.+.. ..+++++.+|... ...|..+|+.+
T Consensus 176 Lk~---~~kPfiivlN~~dp~~-~et~~l~~~l~e-ky~vpvl~v~c~~l~~~DI~~il~~v 232 (492)
T TIGR02836 176 LKE---LNKPFIILLNSTHPYH-PETEALRQELEE-KYDVPVLAMDVESMRESDILSVLEEV 232 (492)
T ss_pred HHh---cCCCEEEEEECcCCCC-chhHHHHHHHHH-HhCCceEEEEHHHcCHHHHHHHHHHH
Confidence 655 5689999999999332 224444556655 4568888877743 33455555443
No 296
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.21 E-value=2.9e-10 Score=94.82 Aligned_cols=106 Identities=20% Similarity=0.191 Sum_probs=67.5
Q ss_pred EEEEEEEeCCCCCCChhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHH--
Q psy549 97 QLTLDILDTSGAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRRE-- 174 (253)
Q Consensus 97 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~-- 174 (253)
.+++.|+||+|... .....+..+|.++++-..... +.+......+ ..+|.++|+||+|+........
T Consensus 126 g~D~viidT~G~~~---~e~~i~~~aD~i~vv~~~~~~---~el~~~~~~l-----~~~~~ivv~NK~Dl~~~~~~~~~~ 194 (300)
T TIGR00750 126 GYDVIIVETVGVGQ---SEVDIANMADTFVVVTIPGTG---DDLQGIKAGL-----MEIADIYVVNKADGEGATNVTIAR 194 (300)
T ss_pred CCCEEEEeCCCCch---hhhHHHHhhceEEEEecCCcc---HHHHHHHHHH-----hhhccEEEEEcccccchhHHHHHH
Confidence 46788999998542 122356678888888544433 3333333323 2368899999999876422111
Q ss_pred -----HHHHHHH--hcCCCcEEEeccCCCCCHHHHHHHHHHHHHHh
Q psy549 175 -----IAETIAL--YDWQCGFVECSAKENYNIVQVFKELLAQAKVQ 213 (253)
Q Consensus 175 -----~~~~~~~--~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 213 (253)
....+.. ..|..+++.+|++++.|++++++++.+.....
T Consensus 195 ~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~~~ 240 (300)
T TIGR00750 195 LMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKTFL 240 (300)
T ss_pred HHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHHHH
Confidence 0111111 13445799999999999999999999875533
No 297
>KOG0461|consensus
Probab=99.21 E-value=2.5e-10 Score=93.38 Aligned_cols=159 Identities=21% Similarity=0.220 Sum_probs=95.2
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhC----CCCCCccccce----eeeeeeE------EcCCCcEEEEEEEeCCCCCCChh
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYD----RFISRYKETVE----ELHRGEY------ELPDGAQLTLDILDTSGAYQFPA 113 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~----~~~~~~~~t~~----~~~~~~~------~~~~~~~~~~~l~D~~g~~~~~~ 113 (253)
..+++.++|+..+|||||.+++..- .|.....++.+ +.-...+ ..+.+..+.+.++|+||+...-.
T Consensus 6 ~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLIR 85 (522)
T KOG0461|consen 6 SNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLIR 85 (522)
T ss_pred ceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHHH
Confidence 4599999999999999999999842 23222222222 2222222 34567788999999999854333
Q ss_pred hHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCcc----ccHHHHHHHHH------hc
Q psy549 114 MRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKD----VRREIAETIAL------YD 183 (253)
Q Consensus 114 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~----~~~~~~~~~~~------~~ 183 (253)
......+--|..++|.|+..+.--+..+.++ +... ...-.++|+||+|..... ..+.....+.+ ..
T Consensus 86 tiiggaqiiDlm~lviDv~kG~QtQtAEcLi--ig~~--~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f~ 161 (522)
T KOG0461|consen 86 TIIGGAQIIDLMILVIDVQKGKQTQTAECLI--IGEL--LCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGFD 161 (522)
T ss_pred HHHhhhheeeeeeEEEehhcccccccchhhh--hhhh--hccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCcC
Confidence 3333334458899999998754323222221 1111 124567888998865541 12222333322 13
Q ss_pred CCCcEEEeccCCC----CCHHHHHHHHHHHH
Q psy549 184 WQCGFVECSAKEN----YNIVQVFKELLAQA 210 (253)
Q Consensus 184 ~~~~~~~~Sa~~~----~~i~~l~~~l~~~~ 210 (253)
.+.|++++|+..| .+|.++.+.+-.++
T Consensus 162 g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~i 192 (522)
T KOG0461|consen 162 GNSPIVEVSAADGYFKEEMIQELKEALESRI 192 (522)
T ss_pred CCCceeEEecCCCccchhHHHHHHHHHHHhh
Confidence 4589999999999 45555555555554
No 298
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.21 E-value=5.7e-10 Score=88.17 Aligned_cols=151 Identities=13% Similarity=0.091 Sum_probs=84.6
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCCC--------CCCcc---ccc--eeeeeeeEEcCCCc------------------
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDRF--------ISRYK---ETV--EELHRGEYELPDGA------------------ 96 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~~--------~~~~~---~t~--~~~~~~~~~~~~~~------------------ 96 (253)
....|+|+|..|+|||||+++++.... ..+.. .+. .......+.+.++.
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~~ 100 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLPL 100 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhcc
Confidence 468899999999999999999985310 00000 000 00000111111111
Q ss_pred -EEEEEEEeCCCCCCChhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCcc--ccH
Q psy549 97 -QLTLDILDTSGAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKD--VRR 173 (253)
Q Consensus 97 -~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~ 173 (253)
...+.++++.|.-.... .+....+..+.|+|+.+.... +..... . ...|.++++||+|+.+.. ...
T Consensus 101 ~~~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~~--~~~~~~-~-----~~~a~iiv~NK~Dl~~~~~~~~~ 169 (207)
T TIGR00073 101 DDIDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDDK--PLKYPG-M-----FKEADLIVINKADLAEAVGFDVE 169 (207)
T ss_pred CCCCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccch--hhhhHh-H-----HhhCCEEEEEHHHccccchhhHH
Confidence 23555677766211000 111234555667777654321 111111 1 225789999999997531 123
Q ss_pred HHHHHHHHhcCCCcEEEeccCCCCCHHHHHHHHHHH
Q psy549 174 EIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQ 209 (253)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 209 (253)
...+.+.......+++++|++++.|++++|+++.+.
T Consensus 170 ~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 170 KMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred HHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 334444444556899999999999999999999875
No 299
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.20 E-value=4.6e-10 Score=104.18 Aligned_cols=117 Identities=15% Similarity=0.187 Sum_probs=78.2
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCC--CCCCccc-c--------------ceeee--eeeEEcCCCcEEEEEEEeCCC
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDR--FISRYKE-T--------------VEELH--RGEYELPDGAQLTLDILDTSG 107 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~--~~~~~~~-t--------------~~~~~--~~~~~~~~~~~~~~~l~D~~g 107 (253)
....+|+|+|+.++|||||+++|+... ....... + +.... ...+.+ ++..+.+.|+||||
T Consensus 18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~-~~~~~~i~liDtPG 96 (731)
T PRK07560 18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEY-EGKEYLINLIDTPG 96 (731)
T ss_pred hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEe-cCCcEEEEEEcCCC
Confidence 345689999999999999999998532 1110000 0 00000 111122 33456789999999
Q ss_pred CCCChhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCC
Q psy549 108 AYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEF 168 (253)
Q Consensus 108 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 168 (253)
+.+|.......++.+|++|+|+|+......+....|.. ... .++|.++++||+|...
T Consensus 97 ~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~-~~~---~~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 97 HVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQ-ALR---ERVKPVLFINKVDRLI 153 (731)
T ss_pred ccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHH-HHH---cCCCeEEEEECchhhc
Confidence 99998888889999999999999987644333333332 222 2468899999999763
No 300
>KOG3886|consensus
Probab=99.20 E-value=3.3e-11 Score=93.19 Aligned_cols=146 Identities=17% Similarity=0.247 Sum_probs=100.7
Q ss_pred cceEEEECCCCCCHHHHHHHHHhCCCCC--CccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhh-----HHHhccc
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYDRFIS--RYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAM-----RELSIST 121 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~-----~~~~~~~ 121 (253)
.-||+++|.+|+|||++-..+..+.... ...+.+.+.....+.+.++ +.+.+||++|++.+... ....+++
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGn--l~LnlwDcGgqe~fmen~~~~q~d~iF~n 81 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGN--LVLNLWDCGGQEEFMENYLSSQEDNIFRN 81 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhh--heeehhccCCcHHHHHHHHhhcchhhhee
Confidence 4689999999999999988877655422 2233444677777766333 56899999999865433 3347889
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHH--hcCCCCCEEEEEecCCCCCcccc-------HHHHHHHHHhcCCCcEEEec
Q psy549 122 ADAFVLVYAVDDASTWDVVKDLREQIVN--KRGLMVPIVVVGNKCELEFKDVR-------REIAETIALYDWQCGFVECS 192 (253)
Q Consensus 122 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~--~~~~~~piilv~nK~Dl~~~~~~-------~~~~~~~~~~~~~~~~~~~S 192 (253)
++++++|||+...+-..++..+...+.. ...+...+++.++|.|+...... .+....+.. .+.+.++++|
T Consensus 82 V~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~-~~~~~~f~Ts 160 (295)
T KOG3886|consen 82 VQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSR-PLECKCFPTS 160 (295)
T ss_pred heeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcc-cccccccccc
Confidence 9999999999988766666666654333 45577889999999998765222 222233333 4456678887
Q ss_pred cCCCC
Q psy549 193 AKENY 197 (253)
Q Consensus 193 a~~~~ 197 (253)
..+..
T Consensus 161 iwDet 165 (295)
T KOG3886|consen 161 IWDET 165 (295)
T ss_pred hhhHH
Confidence 76543
No 301
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.19 E-value=9.7e-11 Score=109.96 Aligned_cols=117 Identities=15% Similarity=0.171 Sum_probs=80.4
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCCC--CCCcccc---------------ceeeeeeeEEc-------------CCCc
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDRF--ISRYKET---------------VEELHRGEYEL-------------PDGA 96 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~~--~~~~~~t---------------~~~~~~~~~~~-------------~~~~ 96 (253)
....+|+|+|+.++|||||+++|+...- ......+ +.......+.+ .++.
T Consensus 17 ~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
T PLN00116 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGN 96 (843)
T ss_pred cCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCC
Confidence 4567999999999999999999985331 1100000 00110111212 0223
Q ss_pred EEEEEEEeCCCCCCChhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCC
Q psy549 97 QLTLDILDTSGAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELE 167 (253)
Q Consensus 97 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 167 (253)
.+.+.|+||||+.+|.......++.+|++|+|+|+.++........|.. +.. .++|+++++||+|..
T Consensus 97 ~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~-~~~---~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-ALG---ERIRPVLTVNKMDRC 163 (843)
T ss_pred ceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHH-HHH---CCCCEEEEEECCccc
Confidence 5678999999999998888888999999999999998765444333333 332 458999999999987
No 302
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=2e-09 Score=89.67 Aligned_cols=85 Identities=20% Similarity=0.222 Sum_probs=66.3
Q ss_pred cceEEEECCCCCCHHHHHHHHHhCCC-CCCccccceeeeeeeEEcCC---------------CcEEEEEEEeCCCCCCC-
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYDRF-ISRYKETVEELHRGEYELPD---------------GAQLTLDILDTSGAYQF- 111 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~---------------~~~~~~~l~D~~g~~~~- 111 (253)
.++|+|+|.||||||||.|+++.... ..+|+.+|.+...+.+.+++ -.+..++|+|++|.-.-
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 47999999999999999999998775 58999999888888877764 12467899999984432
Q ss_pred ---hhh---HHHhcccCCEEEEEEECCC
Q psy549 112 ---PAM---RELSISTADAFVLVYAVDD 133 (253)
Q Consensus 112 ---~~~---~~~~~~~~d~~i~v~d~~~ 133 (253)
..+ -..-++.+|+++.|+++.+
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 222 2335788999999999873
No 303
>PTZ00416 elongation factor 2; Provisional
Probab=99.16 E-value=1.6e-10 Score=108.29 Aligned_cols=117 Identities=14% Similarity=0.179 Sum_probs=79.2
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCC--CCCCccccc---------------eeeeeeeEEcC-------CCcEEEEEE
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDR--FISRYKETV---------------EELHRGEYELP-------DGAQLTLDI 102 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~--~~~~~~~t~---------------~~~~~~~~~~~-------~~~~~~~~l 102 (253)
....+|+|+|+.++|||||+++|+... .......++ .......+.+. ++....+.|
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l 96 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL 96 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence 345699999999999999999999632 111000000 00001112221 123567899
Q ss_pred EeCCCCCCChhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCC
Q psy549 103 LDTSGAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELE 167 (253)
Q Consensus 103 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 167 (253)
+||||+.+|.......++.+|++|+|+|+.++....... .+..+.. .++|+++++||+|+.
T Consensus 97 iDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~-~~~~~~~---~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 97 IDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTET-VLRQALQ---ERIRPVLFINKVDRA 157 (836)
T ss_pred EcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHH-HHHHHHH---cCCCEEEEEEChhhh
Confidence 999999999888888999999999999999875544333 3333333 458999999999987
No 304
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=2.3e-10 Score=92.81 Aligned_cols=164 Identities=15% Similarity=0.112 Sum_probs=103.6
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCC---CCC----------Cccccce----eee-----eeeEEcC--C---CcEEE
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDR---FIS----------RYKETVE----ELH-----RGEYELP--D---GAQLT 99 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~---~~~----------~~~~t~~----~~~-----~~~~~~~--~---~~~~~ 99 (253)
+..++|.++|+..-|||||..+|.+-- +.. .|..+.. +.+ ...-..+ + .-.-.
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 578999999999999999999988411 100 0100000 111 0000010 0 11235
Q ss_pred EEEEeCCCCCCChhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHH---H
Q psy549 100 LDILDTSGAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREI---A 176 (253)
Q Consensus 100 ~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~---~ 176 (253)
+.|+|.||++-.......-..-.|++++|..++.+-.-......+..+.-. .-..+++|-||+|+...+...+- +
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIi--gik~iiIvQNKIDlV~~E~AlE~y~qI 165 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEII--GIKNIIIVQNKIDLVSRERALENYEQI 165 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhh--ccceEEEEecccceecHHHHHHHHHHH
Confidence 789999999887766666666689999999998753322222222222221 22578999999999877333333 3
Q ss_pred HHHHHh--cCCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy549 177 ETIALY--DWQCGFVECSAKENYNIVQVFKELLAQAKV 212 (253)
Q Consensus 177 ~~~~~~--~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 212 (253)
+.|-+- ..+.|++++||..+.||+-+++.|.+.+..
T Consensus 166 k~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ipt 203 (415)
T COG5257 166 KEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPT 203 (415)
T ss_pred HHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCC
Confidence 333331 235799999999999999999999998843
No 305
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.15 E-value=5.4e-10 Score=94.54 Aligned_cols=116 Identities=16% Similarity=0.101 Sum_probs=79.3
Q ss_pred EEEEEEeCCCCCCChhhHHHhcccCCEEEEEEECCCh----------hhHHHHHHHHHHHHH-hcCCCCCEEEEEecCCC
Q psy549 98 LTLDILDTSGAYQFPAMRELSISTADAFVLVYAVDDA----------STWDVVKDLREQIVN-KRGLMVPIVVVGNKCEL 166 (253)
Q Consensus 98 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl 166 (253)
+.+.+||++|+...+..|..++.+++++|+|+|+++- ..+......+..+.. ..-.++|+++++||.|+
T Consensus 184 ~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~ 263 (342)
T smart00275 184 LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDL 263 (342)
T ss_pred eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHh
Confidence 5678999999999999999999999999999999973 223332333333333 22256899999999996
Q ss_pred CCcc----------------cc-----HHHHHHHHHhc-----CCCcEEEeccCCCCCHHHHHHHHHHHHHHh
Q psy549 167 EFKD----------------VR-----REIAETIALYD-----WQCGFVECSAKENYNIVQVFKELLAQAKVQ 213 (253)
Q Consensus 167 ~~~~----------------~~-----~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 213 (253)
.... .. .-+...+.... ..+.++.|+|.+-.++..+|+.+.+.+...
T Consensus 264 ~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~ 336 (342)
T smart00275 264 FEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQR 336 (342)
T ss_pred HHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHH
Confidence 5320 01 11222222211 224456788999999999999988887665
No 306
>KOG1707|consensus
Probab=99.15 E-value=7.5e-10 Score=96.18 Aligned_cols=163 Identities=15% Similarity=0.192 Sum_probs=110.3
Q ss_pred CCCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCC
Q psy549 45 LQKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTAD 123 (253)
Q Consensus 45 ~~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 123 (253)
...+.+.|.++|+.++|||.|++.|+++.+...+..++. .+....+.. .++.-.+.+-|.+-. ....+...- ..+|
T Consensus 421 ~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~-~g~~k~LiL~ei~~~-~~~~l~~ke-~~cD 497 (625)
T KOG1707|consen 421 TDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEV-KGQQKYLILREIGED-DQDFLTSKE-AACD 497 (625)
T ss_pred ccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeee-ccccceEEEeecCcc-ccccccCcc-ceee
Confidence 356788999999999999999999999888665544444 333333344 355555667776543 222222111 6699
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCcc--ccHHHHHHHHHhcCCCcEEEeccCCCCCHHH
Q psy549 124 AFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKD--VRREIAETIALYDWQCGFVECSAKENYNIVQ 201 (253)
Q Consensus 124 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 201 (253)
++.++||.+++.+|..+...++..... ..+|+++|++|+|+.... ...+. ..++....-.+.+.+|.+.... .+
T Consensus 498 v~~~~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q~~~iqp-de~~~~~~i~~P~~~S~~~~~s-~~ 573 (625)
T KOG1707|consen 498 VACLVYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQRYSIQP-DEFCRQLGLPPPIHISSKTLSS-NE 573 (625)
T ss_pred eEEEecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhhccCCCh-HHHHHhcCCCCCeeeccCCCCC-ch
Confidence 999999999999998877765543332 679999999999998762 22233 5566533334456666664223 89
Q ss_pred HHHHHHHHHHHhc
Q psy549 202 VFKELLAQAKVQY 214 (253)
Q Consensus 202 l~~~l~~~~~~~~ 214 (253)
+|..|+..+..-+
T Consensus 574 lf~kL~~~A~~Ph 586 (625)
T KOG1707|consen 574 LFIKLATMAQYPH 586 (625)
T ss_pred HHHHHHHhhhCCC
Confidence 9999888875443
No 307
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.15 E-value=1.2e-09 Score=86.66 Aligned_cols=159 Identities=18% Similarity=0.219 Sum_probs=90.3
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCCC-CCC--ccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChh----h---HH---
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDRF-ISR--YKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPA----M---RE--- 116 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~~-~~~--~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~----~---~~--- 116 (253)
++|+++|..|+||||++|.+++... ... ..+.+.........+ ++ ..+.++||||-.+... . ..
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~-~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l 77 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEV-DG--RQVTVIDTPGLFDSDGSDEEIIREIKRCL 77 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEE-TT--EEEEEEE--SSEETTEEHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeee-cc--eEEEEEeCCCCCCCcccHHHHHHHHHHHH
Confidence 4899999999999999999999774 322 122333444444555 55 4678999999443211 1 11
Q ss_pred -HhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCC--CCCEEEEEecCCCCCccccH--------HHHHHHHHhcCC
Q psy549 117 -LSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGL--MVPIVVVGNKCELEFKDVRR--------EIAETIALYDWQ 185 (253)
Q Consensus 117 -~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~~~~--------~~~~~~~~~~~~ 185 (253)
....+.+++|+|+.+. +-+-.. ...+..+....++ -..++||.|..|.......+ ...+.+.. .++
T Consensus 78 ~~~~~g~ha~llVi~~~-r~t~~~-~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~-~c~ 154 (212)
T PF04548_consen 78 SLCSPGPHAFLLVIPLG-RFTEED-REVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIE-KCG 154 (212)
T ss_dssp HHTTT-ESEEEEEEETT-B-SHHH-HHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHH-HTT
T ss_pred HhccCCCeEEEEEEecC-cchHHH-HHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhh-hcC
Confidence 1235689999999988 323222 2222223332222 14678888888865542211 12233333 455
Q ss_pred CcEEEeccC------CCCCHHHHHHHHHHHHHHhc
Q psy549 186 CGFVECSAK------ENYNIVQVFKELLAQAKVQY 214 (253)
Q Consensus 186 ~~~~~~Sa~------~~~~i~~l~~~l~~~~~~~~ 214 (253)
-.+...+.+ ....+.+||+.+-+.+.+..
T Consensus 155 ~R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~ 189 (212)
T PF04548_consen 155 GRYHVFNNKTKDKEKDESQVSELLEKIEEMVQENG 189 (212)
T ss_dssp TCEEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CEEEEEeccccchhhhHHHHHHHHHHHHHHHHHcC
Confidence 567776665 33468888888887776653
No 308
>KOG1144|consensus
Probab=99.14 E-value=5.5e-10 Score=99.21 Aligned_cols=165 Identities=18% Similarity=0.157 Sum_probs=107.9
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCCCC-CCccccce----eeeeee--------EEcCCCc----EEEEEEEeCCCC
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDRFI-SRYKETVE----ELHRGE--------YELPDGA----QLTLDILDTSGA 108 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~-~~~~~t~~----~~~~~~--------~~~~~~~----~~~~~l~D~~g~ 108 (253)
.-..+-|+|+|+..+|||-|+..+.+.+.. ..+...+. .++... +.- ++. ---+.++||||+
T Consensus 472 ~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~-~~K~~~kvPg~lvIdtpgh 550 (1064)
T KOG1144|consen 472 NLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKK-DAKKRLKVPGLLVIDTPGH 550 (1064)
T ss_pred hcCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHh-hhhhhcCCCeeEEecCCCc
Confidence 445678999999999999999999875432 22211111 111110 000 110 013678999999
Q ss_pred CCChhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc------------------c
Q psy549 109 YQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK------------------D 170 (253)
Q Consensus 109 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~------------------~ 170 (253)
+.|..++......+|++|+|.|+.++---+. ++.+...+..+.|+|+.+||+|-.-. .
T Consensus 551 EsFtnlRsrgsslC~~aIlvvdImhGlepqt----iESi~lLR~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~ 626 (1064)
T KOG1144|consen 551 ESFTNLRSRGSSLCDLAILVVDIMHGLEPQT----IESINLLRMRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKD 626 (1064)
T ss_pred hhhhhhhhccccccceEEEEeehhccCCcch----hHHHHHHHhcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHH
Confidence 9999999999999999999999987532222 22233333356899999999994311 0
Q ss_pred -------ccHHHHHHHHHhcCC-------------CcEEEeccCCCCCHHHHHHHHHHHHHHhcc
Q psy549 171 -------VRREIAETIALYDWQ-------------CGFVECSAKENYNIVQVFKELLAQAKVQYN 215 (253)
Q Consensus 171 -------~~~~~~~~~~~~~~~-------------~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~ 215 (253)
....+...|+..+.+ +.+++|||.+|.||.+|+-+|+......+.
T Consensus 627 v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~ 691 (1064)
T KOG1144|consen 627 VQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMV 691 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHH
Confidence 112233334432222 456899999999999999999988766644
No 309
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.13 E-value=3.5e-09 Score=92.54 Aligned_cols=162 Identities=18% Similarity=0.238 Sum_probs=110.0
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCC-CcEEEEEEEeCCCCCCChhhHHHhccc---
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPD-GAQLTLDILDTSGAYQFPAMRELSIST--- 121 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~--- 121 (253)
...-.|+|+|..++|||||+.+|.+.+- +..+.. .+.+..+.-.+ ....++.+|-..|...+..+....+..
T Consensus 23 ~~~k~vlvlG~~~~GKttli~~L~~~e~---~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l 99 (472)
T PF05783_consen 23 PSEKSVLVLGDKGSGKTTLIARLQGIED---PKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENL 99 (472)
T ss_pred CCCceEEEEeCCCCchHHHHHHhhccCC---CCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccc
Confidence 3457999999999999999999876442 222222 33333333211 223568999998877777777665543
Q ss_pred -CCEEEEEEECCChhhHH-HHHHHHHHHHHh-------------------------------------------------
Q psy549 122 -ADAFVLVYAVDDASTWD-VVKDLREQIVNK------------------------------------------------- 150 (253)
Q Consensus 122 -~d~~i~v~d~~~~~s~~-~~~~~~~~~~~~------------------------------------------------- 150 (253)
--++|+|.|.+.|..+- .+..|+..+...
T Consensus 100 ~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~ 179 (472)
T PF05783_consen 100 PNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDD 179 (472)
T ss_pred cceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccccc
Confidence 24788899999986644 355554333322
Q ss_pred -------------cCCCCCEEEEEecCCCCCc------------cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHHH
Q psy549 151 -------------RGLMVPIVVVGNKCELEFK------------DVRREIAETIALYDWQCGFVECSAKENYNIVQVFKE 205 (253)
Q Consensus 151 -------------~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 205 (253)
...++|++||++|+|.... +...+..+.++. ..+..+|+||++...+++-++.+
T Consensus 180 ~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL-~yGAsL~yts~~~~~n~~~L~~y 258 (472)
T PF05783_consen 180 ESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCL-KYGASLIYTSVKEEKNLDLLYKY 258 (472)
T ss_pred ccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHH-hcCCeEEEeeccccccHHHHHHH
Confidence 0124799999999996432 233455666776 67888999999999999999999
Q ss_pred HHHHHHH
Q psy549 206 LLAQAKV 212 (253)
Q Consensus 206 l~~~~~~ 212 (253)
|...+..
T Consensus 259 i~h~l~~ 265 (472)
T PF05783_consen 259 ILHRLYG 265 (472)
T ss_pred HHHHhcc
Confidence 8887754
No 310
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=1.8e-10 Score=96.98 Aligned_cols=129 Identities=19% Similarity=0.256 Sum_probs=89.7
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHh--CCC--------------CCCcccc-----ceeeeeeeEEcCCCcEEEEEEEeC
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLY--DRF--------------ISRYKET-----VEELHRGEYELPDGAQLTLDILDT 105 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~--~~~--------------~~~~~~t-----~~~~~~~~~~~~~~~~~~~~l~D~ 105 (253)
..+-..+||-+|.+|||||.+.|+- +.+ ....... ........+.+ +...+.+.|.||
T Consensus 10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF-~Y~~~~iNLLDT 88 (528)
T COG4108 10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQF-DYADCLVNLLDT 88 (528)
T ss_pred hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEe-ccCCeEEeccCC
Confidence 3456789999999999999999881 111 1110001 12566667777 666788999999
Q ss_pred CCCCCChhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc---cccHHHHHHHH
Q psy549 106 SGAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK---DVRREIAETIA 180 (253)
Q Consensus 106 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~---~~~~~~~~~~~ 180 (253)
||++.|..-++..+..+|.+++|.|+..+..-+.+. +.+ +-+. -++||+-++||.|-... ++..++.+.+.
T Consensus 89 PGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~K-Lfe-Vcrl--R~iPI~TFiNKlDR~~rdP~ELLdEiE~~L~ 162 (528)
T COG4108 89 PGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLK-LFE-VCRL--RDIPIFTFINKLDREGRDPLELLDEIEEELG 162 (528)
T ss_pred CCccccchhHHHHHHhhheeeEEEecccCccHHHHH-HHH-HHhh--cCCceEEEeeccccccCChHHHHHHHHHHhC
Confidence 999999999999999999999999998764333222 111 1222 45999999999997664 34444444444
No 311
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.08 E-value=9.4e-10 Score=83.87 Aligned_cols=63 Identities=21% Similarity=0.229 Sum_probs=42.8
Q ss_pred EEEEEeCCCCCC----ChhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecC
Q psy549 99 TLDILDTSGAYQ----FPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKC 164 (253)
Q Consensus 99 ~~~l~D~~g~~~----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~ 164 (253)
.+.|+|+||... ....+..++..+|++|+|.+++....-.....+...... ....+++|.||+
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~---~~~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDP---DKSRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTT---TCSSEEEEEE-G
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcC---CCCeEEEEEcCC
Confidence 367999999543 335666788999999999999986554444444443333 234588888984
No 312
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.06 E-value=3e-09 Score=89.96 Aligned_cols=154 Identities=17% Similarity=0.107 Sum_probs=108.8
Q ss_pred eEEEECCCCCCHHHHHHHHHhCCC----CCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEE
Q psy549 51 RVVVMGGARVGKSSIISQFLYDRF----ISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFV 126 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~~~~----~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 126 (253)
.|+..|+-.-|||||+..+.+..- ......++.+........+|+ .+.|+|+||++++-......+...|.++
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~---~~~fIDvpgh~~~i~~miag~~~~d~al 78 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDG---VMGFIDVPGHPDFISNLLAGLGGIDYAL 78 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCC---ceEEeeCCCcHHHHHHHHhhhcCCceEE
Confidence 578899999999999999997553 223334555665556655443 6889999999998887777788899999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCC-CEEEEEecCCCCCccccHHHHHHHHHh--cCCCcEEEeccCCCCCHHHHH
Q psy549 127 LVYAVDDASTWDVVKDLREQIVNKRGLMV-PIVVVGNKCELEFKDVRREIAETIALY--DWQCGFVECSAKENYNIVQVF 203 (253)
Q Consensus 127 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-piilv~nK~Dl~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~~i~~l~ 203 (253)
+|++.++.-.-+..+... .+.. .++ ..++|+||+|..+....++..+.+... ....+++.+|+++|.||+++-
T Consensus 79 LvV~~deGl~~qtgEhL~-iLdl---lgi~~giivltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk 154 (447)
T COG3276 79 LVVAADEGLMAQTGEHLL-ILDL---LGIKNGIIVLTKADRVDEARIEQKIKQILADLSLANAKIFKTSAKTGRGIEELK 154 (447)
T ss_pred EEEeCccCcchhhHHHHH-HHHh---cCCCceEEEEeccccccHHHHHHHHHHHHhhcccccccccccccccCCCHHHHH
Confidence 999998764433333321 1222 233 459999999988763222222222221 235678999999999999999
Q ss_pred HHHHHHHH
Q psy549 204 KELLAQAK 211 (253)
Q Consensus 204 ~~l~~~~~ 211 (253)
+.|.+...
T Consensus 155 ~~l~~L~~ 162 (447)
T COG3276 155 NELIDLLE 162 (447)
T ss_pred HHHHHhhh
Confidence 99999884
No 313
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.06 E-value=1.1e-09 Score=89.44 Aligned_cols=55 Identities=15% Similarity=-0.047 Sum_probs=43.6
Q ss_pred CCEEEEEecCCCCCc--cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHHHHHHH
Q psy549 155 VPIVVVGNKCELEFK--DVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQ 209 (253)
Q Consensus 155 ~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 209 (253)
.+-++|+||+|+... ...+...+.+.......+++++|+++|.|++++++||..+
T Consensus 231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 567999999999753 2234455566665678899999999999999999999774
No 314
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.06 E-value=1.3e-09 Score=92.11 Aligned_cols=154 Identities=16% Similarity=0.096 Sum_probs=76.5
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCCC---CCCc---cccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHH----
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDRF---ISRY---KETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMREL---- 117 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~~---~~~~---~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~---- 117 (253)
..++|+|+|.+|+|||||||+|.+-.. .... ..|+.... .+..+.-. .+.+||.||.....-....
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~--~Y~~p~~p--nv~lWDlPG~gt~~f~~~~Yl~~ 109 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPT--PYPHPKFP--NVTLWDLPGIGTPNFPPEEYLKE 109 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-E--EEE-SS-T--TEEEEEE--GGGSS--HHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCe--eCCCCCCC--CCeEEeCCCCCCCCCCHHHHHHH
Confidence 458999999999999999999976221 1111 12222222 22222221 4689999995432222222
Q ss_pred -hcccCCEEEEEEECCChhhHHHHHHH-HHHHHHhcCCCCCEEEEEecCCCC--Cc-----------cccHHH----HHH
Q psy549 118 -SISTADAFVLVYAVDDASTWDVVKDL-REQIVNKRGLMVPIVVVGNKCELE--FK-----------DVRREI----AET 178 (253)
Q Consensus 118 -~~~~~d~~i~v~d~~~~~s~~~~~~~-~~~~~~~~~~~~piilv~nK~Dl~--~~-----------~~~~~~----~~~ 178 (253)
-+..-|.+|++.+-. |....-+ ...+.. .++|+.+|-+|+|.. +. +..+++ .+.
T Consensus 110 ~~~~~yD~fiii~s~r----f~~ndv~La~~i~~---~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~ 182 (376)
T PF05049_consen 110 VKFYRYDFFIIISSER----FTENDVQLAKEIQR---MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLEN 182 (376)
T ss_dssp TTGGG-SEEEEEESSS------HHHHHHHHHHHH---TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHH
T ss_pred ccccccCEEEEEeCCC----CchhhHHHHHHHHH---cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHH
Confidence 345678888877532 3332333 233333 458999999999951 10 222222 333
Q ss_pred HHHhcC-CCcEEEeccCCCC--CHHHHHHHHHHHHHH
Q psy549 179 IALYDW-QCGFVECSAKENY--NIVQVFKELLAQAKV 212 (253)
Q Consensus 179 ~~~~~~-~~~~~~~Sa~~~~--~i~~l~~~l~~~~~~ 212 (253)
+.+.+. ..++|.+|..+-. +...+.+.|.+.+..
T Consensus 183 L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~ 219 (376)
T PF05049_consen 183 LQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPA 219 (376)
T ss_dssp HHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-G
T ss_pred HHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHH
Confidence 333222 2468889997744 577777777766543
No 315
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.01 E-value=4.1e-09 Score=95.95 Aligned_cols=119 Identities=16% Similarity=0.171 Sum_probs=84.2
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCC--CCC--C-c-----cccc------e-eeeeeeEEcCCCc-EEEEEEEeCCC
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDR--FIS--R-Y-----KETV------E-ELHRGEYELPDGA-QLTLDILDTSG 107 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~--~~~--~-~-----~~t~------~-~~~~~~~~~~~~~-~~~~~l~D~~g 107 (253)
.....+|+|+|+..+|||||..+++-.. +.. . . .... . .......+. ... .+.+.|+||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~-~~~~~~~iNlIDTPG 85 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTL-FWKGDYRINLIDTPG 85 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEE-EEcCceEEEEeCCCC
Confidence 4466799999999999999999999321 110 0 0 0000 0 222222222 222 47899999999
Q ss_pred CCCChhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc
Q psy549 108 AYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK 169 (253)
Q Consensus 108 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 169 (253)
+-+|.......++-.|++++|+|+......+...-|.... . .++|.++++||.|....
T Consensus 86 HVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~-~---~~vp~i~fiNKmDR~~a 143 (697)
T COG0480 86 HVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQAD-K---YGVPRILFVNKMDRLGA 143 (697)
T ss_pred ccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHh-h---cCCCeEEEEECcccccc
Confidence 9999999999999999999999999876655544454433 2 45899999999997665
No 316
>KOG0468|consensus
Probab=98.96 E-value=4.3e-09 Score=92.68 Aligned_cols=116 Identities=22% Similarity=0.287 Sum_probs=84.2
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCCCCCCc---------cccce-----------eeeeeeEEcCCCcEEEEEEEeCC
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDRFISRY---------KETVE-----------ELHRGEYELPDGAQLTLDILDTS 106 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~---------~~t~~-----------~~~~~~~~~~~~~~~~~~l~D~~ 106 (253)
....+|+++|+-+.|||+|+..|..+..+... ..+.. ....-.+.-..++.+-+++.|||
T Consensus 126 ~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTP 205 (971)
T KOG0468|consen 126 ERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTP 205 (971)
T ss_pred ceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCC
Confidence 45678999999999999999999865543221 11110 11111111124667788999999
Q ss_pred CCCCChhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCC
Q psy549 107 GAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCEL 166 (253)
Q Consensus 107 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 166 (253)
|+-.|.......++.+|++++|+|+.++..+.. ++.+..... .+.|+++|+||.|.
T Consensus 206 GHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlnt-Er~ikhaiq---~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 206 GHVNFSDETTASLRLSDGVVLVVDVAEGVMLNT-ERIIKHAIQ---NRLPIVVVINKVDR 261 (971)
T ss_pred CcccchHHHHHHhhhcceEEEEEEcccCceeeH-HHHHHHHHh---ccCcEEEEEehhHH
Confidence 999999999999999999999999999887755 444433333 45899999999994
No 317
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.94 E-value=2.5e-08 Score=79.95 Aligned_cols=69 Identities=17% Similarity=0.075 Sum_probs=43.1
Q ss_pred EEEEEEeCCCCCCC-------------hhhHHHhcc-cCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEec
Q psy549 98 LTLDILDTSGAYQF-------------PAMRELSIS-TADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNK 163 (253)
Q Consensus 98 ~~~~l~D~~g~~~~-------------~~~~~~~~~-~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK 163 (253)
..|.++|+||.... ..+...+++ ..+++++|.|+.....-.....+...+. ....|+++|+||
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld---~~~~rti~ViTK 201 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVD---PQGERTIGVITK 201 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHH---HcCCcEEEEEEC
Confidence 46789999997521 123344666 4569999998865332222222222222 256899999999
Q ss_pred CCCCCc
Q psy549 164 CELEFK 169 (253)
Q Consensus 164 ~Dl~~~ 169 (253)
+|....
T Consensus 202 ~D~~~~ 207 (240)
T smart00053 202 LDLMDE 207 (240)
T ss_pred CCCCCc
Confidence 998753
No 318
>KOG1487|consensus
Probab=98.93 E-value=4.2e-09 Score=83.14 Aligned_cols=172 Identities=20% Similarity=0.204 Sum_probs=116.2
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCCC-CCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCCh-------hhHHHhc
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDRF-ISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFP-------AMRELSI 119 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-------~~~~~~~ 119 (253)
...+|.++|.|.+|||||+..+.+... +..+..|+-....+...+ .+ -++++.|.||.-+-. .......
T Consensus 58 g~a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y-~g--aKiqlldlpgiiegakdgkgrg~qviava 134 (358)
T KOG1487|consen 58 GDARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRY-KG--AKIQLLDLPGIIEGAKDGKGRGKQVIAVA 134 (358)
T ss_pred cceeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEec-cc--cceeeecCcchhcccccCCCCccEEEEEe
Confidence 345999999999999999999887553 677778888888888877 54 378999999965532 1122345
Q ss_pred ccCCEEEEEEECCChhhHHHH-HHHHH-------------------------------------HHHHh-----------
Q psy549 120 STADAFVLVYAVDDASTWDVV-KDLRE-------------------------------------QIVNK----------- 150 (253)
Q Consensus 120 ~~~d~~i~v~d~~~~~s~~~~-~~~~~-------------------------------------~~~~~----------- 150 (253)
+-+..+++|.|+..+-+-..+ +..++ .+..+
T Consensus 135 rtcnli~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~ 214 (358)
T KOG1487|consen 135 RTCNLIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRF 214 (358)
T ss_pred ecccEEEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeeec
Confidence 678999999998764332211 11000 00000
Q ss_pred -----------cCC--CCCEEEEEecCCCCCccccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHHHHHHHHHHhcccC
Q psy549 151 -----------RGL--MVPIVVVGNKCELEFKDVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQAKVQYNLS 217 (253)
Q Consensus 151 -----------~~~--~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~~~ 217 (253)
... .+|.+.+.||+|.. ..+....+- .....+++||.++.|++++++.|++.+ ++.
T Consensus 215 DaT~DdLIdvVegnr~yVp~iyvLNkIdsI----SiEELdii~---~iphavpISA~~~wn~d~lL~~mweyL----~Lv 283 (358)
T KOG1487|consen 215 DATADDLIDVVEGNRIYVPCIYVLNKIDSI----SIEELDIIY---TIPHAVPISAHTGWNFDKLLEKMWEYL----KLV 283 (358)
T ss_pred CcchhhhhhhhccCceeeeeeeeeccccee----eeeccceee---eccceeecccccccchHHHHHHHhhcc----hhe
Confidence 001 36788888888843 222222222 233468899999999999999999887 445
Q ss_pred hhhccccccCCCCcCC
Q psy549 218 PAVRRRRQSLPNYIGT 233 (253)
Q Consensus 218 ~~~~~~~~~~~~~~~~ 233 (253)
....+++.+.|++...
T Consensus 284 riYtkPKgq~PDy~~p 299 (358)
T KOG1487|consen 284 RIYTKPKGQPPDYTSP 299 (358)
T ss_pred EEecCCCCCCCCCCCC
Confidence 6778889999988743
No 319
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=98.88 E-value=2.2e-08 Score=82.42 Aligned_cols=150 Identities=24% Similarity=0.193 Sum_probs=92.1
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCCC--CCC--------c--cccc-----------------eeee--eeeEEcCCC
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDRF--ISR--------Y--KETV-----------------EELH--RGEYELPDG 95 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~~--~~~--------~--~~t~-----------------~~~~--~~~~~~~~~ 95 (253)
+..++.+.+|...=||||||-||+.+.- ..+ . ..+. +... -..+.+...
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 4568999999999999999999995431 100 0 0111 0000 011111123
Q ss_pred cEEEEEEEeCCCCCCChhhHHHhcccCCEEEEEEECCChhhHHHHH-HHHHHHHHhcCCCCCEEEEEecCCCCCc--ccc
Q psy549 96 AQLTLDILDTSGAYQFPAMRELSISTADAFVLVYAVDDASTWDVVK-DLREQIVNKRGLMVPIVVVGNKCELEFK--DVR 172 (253)
Q Consensus 96 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~ 172 (253)
..-+|.+-||||++.|-.....-..-||++|+++|+-..-.-+.-. .++..+. .-..+++.+||+||.+. +..
T Consensus 84 ~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLL----GIrhvvvAVNKmDLvdy~e~~F 159 (431)
T COG2895 84 EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLL----GIRHVVVAVNKMDLVDYSEEVF 159 (431)
T ss_pred ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHh----CCcEEEEEEeeecccccCHHHH
Confidence 3456789999999999777666667799999999996653322211 1222222 12467888899999876 222
Q ss_pred HH---HHHHHHHhcC--CCcEEEeccCCCCCHH
Q psy549 173 RE---IAETIALYDW--QCGFVECSAKENYNIV 200 (253)
Q Consensus 173 ~~---~~~~~~~~~~--~~~~~~~Sa~~~~~i~ 200 (253)
++ ....|+.... ...++++||..|.|+-
T Consensus 160 ~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 160 EAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred HHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 22 2333444221 2468999999999874
No 320
>KOG0410|consensus
Probab=98.87 E-value=2.7e-08 Score=81.07 Aligned_cols=158 Identities=16% Similarity=0.146 Sum_probs=107.2
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCCC-CCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCC--ChhhHHH------h
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDRF-ISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQ--FPAMREL------S 118 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--~~~~~~~------~ 118 (253)
...-|+++|-.|+|||||+++|++... +.+....+-+........+.|..+ .+.||.|.-. ...+... -
T Consensus 177 s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~v--lltDTvGFisdLP~~LvaAF~ATLee 254 (410)
T KOG0410|consen 177 SSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNFV--LLTDTVGFISDLPIQLVAAFQATLEE 254 (410)
T ss_pred CCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcEE--EEeechhhhhhCcHHHHHHHHHHHHH
Confidence 446899999999999999999997554 566666677888888888787654 6779988322 2222222 2
Q ss_pred cccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCC----EEEEEecCCCCCccccHHHHHHHHHhcCCCcEEEeccC
Q psy549 119 ISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVP----IVVVGNKCELEFKDVRREIAETIALYDWQCGFVECSAK 194 (253)
Q Consensus 119 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p----iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 194 (253)
+..+|.++.|.|+++|.........+.-+....-+..| ++=|-||+|.....+..+ ..+ .+.+|++
T Consensus 255 VaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~E--------~n~--~v~isal 324 (410)
T KOG0410|consen 255 VAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEEE--------KNL--DVGISAL 324 (410)
T ss_pred HhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCccc--------cCC--ccccccc
Confidence 45689999999999987644433333333332222222 355668888655433321 111 5789999
Q ss_pred CCCCHHHHHHHHHHHHHHhcccC
Q psy549 195 ENYNIVQVFKELLAQAKVQYNLS 217 (253)
Q Consensus 195 ~~~~i~~l~~~l~~~~~~~~~~~ 217 (253)
+|.|++++++.+-..+.......
T Consensus 325 tgdgl~el~~a~~~kv~~~t~~~ 347 (410)
T KOG0410|consen 325 TGDGLEELLKAEETKVASETTVD 347 (410)
T ss_pred cCccHHHHHHHHHHHhhhhheee
Confidence 99999999999888877665543
No 321
>KOG0458|consensus
Probab=98.87 E-value=1.8e-08 Score=87.75 Aligned_cols=154 Identities=22% Similarity=0.257 Sum_probs=95.4
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCC--CC----------------------CCccccce------eeeeeeEEcCCC
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDR--FI----------------------SRYKETVE------ELHRGEYELPDG 95 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~--~~----------------------~~~~~t~~------~~~~~~~~~~~~ 95 (253)
.+..+.++++|+.++|||||+.+++..- +. .-...|.+ .-..+...+ +.
T Consensus 174 ~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~f-es 252 (603)
T KOG0458|consen 174 PKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWF-ES 252 (603)
T ss_pred CccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEE-ec
Confidence 4578999999999999999999998311 10 00000100 222223333 45
Q ss_pred cEEEEEEEeCCCCCCChhhHHHhcccCCEEEEEEECCChh---hHHH--HHHHHHHHHHhcCCCCCEEEEEecCCCCCc-
Q psy549 96 AQLTLDILDTSGAYQFPAMRELSISTADAFVLVYAVDDAS---TWDV--VKDLREQIVNKRGLMVPIVVVGNKCELEFK- 169 (253)
Q Consensus 96 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~--~~~~~~~~~~~~~~~~piilv~nK~Dl~~~- 169 (253)
....++|.|.||+..|-...-.-...+|++++|.|++-.+ .|+. ..+.+..+.+.. .-..+++++||.|+.+=
T Consensus 253 ~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~L-gi~qlivaiNKmD~V~Ws 331 (603)
T KOG0458|consen 253 KSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSL-GISQLIVAINKMDLVSWS 331 (603)
T ss_pred CceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHc-CcceEEEEeecccccCcc
Confidence 5667899999999888877777778899999999998643 1221 111222222221 13567888999998764
Q ss_pred -cccHHHH---HHHH-H----hcCCCcEEEeccCCCCCHHH
Q psy549 170 -DVRREIA---ETIA-L----YDWQCGFVECSAKENYNIVQ 201 (253)
Q Consensus 170 -~~~~~~~---~~~~-~----~~~~~~~~~~Sa~~~~~i~~ 201 (253)
+..+++. ..+. + ....+.|++||+..|.|+..
T Consensus 332 q~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k 372 (603)
T KOG0458|consen 332 QDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIK 372 (603)
T ss_pred HHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccc
Confidence 1112222 2222 1 11235799999999998754
No 322
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.86 E-value=1.6e-08 Score=81.29 Aligned_cols=145 Identities=20% Similarity=0.206 Sum_probs=88.2
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHh---CC-------CC--CCccccc---eeeeeeeEEcCCCcEEEEEEEeCCCCCC
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLY---DR-------FI--SRYKETV---EELHRGEYELPDGAQLTLDILDTSGAYQ 110 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~---~~-------~~--~~~~~t~---~~~~~~~~~~~~~~~~~~~l~D~~g~~~ 110 (253)
.++.++|..+|+.+-|||||.-++.. .. +. ...+... .......+.+ +...-.+-.+|+||+.+
T Consensus 9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahvey-et~~rhyahVDcPGHaD 87 (394)
T COG0050 9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEY-ETANRHYAHVDCPGHAD 87 (394)
T ss_pred CCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEE-ecCCceEEeccCCChHH
Confidence 46789999999999999999988773 11 10 0011000 0222333333 22233567899999998
Q ss_pred ChhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCC-EEEEEecCCCCCc-----cccHHHHHHHHHhc-
Q psy549 111 FPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVP-IVVVGNKCELEFK-----DVRREIAETIALYD- 183 (253)
Q Consensus 111 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~-----~~~~~~~~~~~~~~- 183 (253)
|-.....-..+.|++|+|++++|..--+..++.+ .-+.-+.| +++++||+|+.++ .+..+..+.+....
T Consensus 88 YvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiL----larqvGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f 163 (394)
T COG0050 88 YVKNMITGAAQMDGAILVVAATDGPMPQTREHIL----LARQVGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGF 163 (394)
T ss_pred HHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhh----hhhhcCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCC
Confidence 8766666667889999999999865433333322 11113454 4666799999875 23333444444422
Q ss_pred --CCCcEEEeccCC
Q psy549 184 --WQCGFVECSAKE 195 (253)
Q Consensus 184 --~~~~~~~~Sa~~ 195 (253)
...|++.-|+..
T Consensus 164 ~gd~~Pii~gSal~ 177 (394)
T COG0050 164 PGDDTPIIRGSALK 177 (394)
T ss_pred CCCCcceeechhhh
Confidence 245777777754
No 323
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.86 E-value=2.7e-08 Score=81.95 Aligned_cols=115 Identities=20% Similarity=0.218 Sum_probs=65.5
Q ss_pred cceEEEECCCCCCHHHHHHHHHhCCCCCCc----------cccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhh---
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYDRFISRY----------KETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAM--- 114 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~----------~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--- 114 (253)
.++|+++|.+|+|||||||.|++....... ..+.. ......+.- ++..+.++++||||-......
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e-~~~~l~LtiiDTpGfGd~i~n~~~ 82 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEE-NGVKLNLTIIDTPGFGDNIDNSDC 82 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEE-TCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEecc-CCcceEEEEEeCCCccccccchhh
Confidence 589999999999999999999986642221 01111 222223333 677889999999994331100
Q ss_pred H-----------HHh-------------cccCCEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc
Q psy549 115 R-----------ELS-------------ISTADAFVLVYAVDDAS-TWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK 169 (253)
Q Consensus 115 ~-----------~~~-------------~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 169 (253)
+ ..+ -..+|++||+.+++... .-.++. .+..+ ...+++|-|+.|+|....
T Consensus 83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~-~mk~L----s~~vNvIPvIaKaD~lt~ 157 (281)
T PF00735_consen 83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIE-FMKRL----SKRVNVIPVIAKADTLTP 157 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHH-HHHHH----TTTSEEEEEESTGGGS-H
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHH-HHHHh----cccccEEeEEecccccCH
Confidence 0 000 01368999999876421 112222 12222 245789999999997765
No 324
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.84 E-value=2.5e-08 Score=77.66 Aligned_cols=95 Identities=19% Similarity=0.119 Sum_probs=65.8
Q ss_pred ChhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHH----HhcCC-
Q psy549 111 FPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIA----LYDWQ- 185 (253)
Q Consensus 111 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~~~~- 185 (253)
+...+..+++.+|++++|+|+.+.... |...+... ..++|+++|+||+|+............+. .....
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~-~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 97 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLF-GGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGL 97 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHh-cCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCC
Confidence 567778889999999999999875421 22222221 24589999999999875543333333332 11122
Q ss_pred --CcEEEeccCCCCCHHHHHHHHHHHHH
Q psy549 186 --CGFVECSAKENYNIVQVFKELLAQAK 211 (253)
Q Consensus 186 --~~~~~~Sa~~~~~i~~l~~~l~~~~~ 211 (253)
.+++++||+++.|++++++.|.+.+.
T Consensus 98 ~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 98 KPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred CcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 36899999999999999999998764
No 325
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.83 E-value=9.2e-08 Score=85.52 Aligned_cols=119 Identities=18% Similarity=0.189 Sum_probs=72.6
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCC-CC-CCc-cccceeeeeeeEEcCCCcEEEEEEEeCCCCCCCh-------hh-
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDR-FI-SRY-KETVEELHRGEYELPDGAQLTLDILDTSGAYQFP-------AM- 114 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~-~~-~~~-~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-------~~- 114 (253)
....++|+++|.+|+||||++|.|++.. +. ... ..|+. ........ ++ ..+.++||||..... ..
T Consensus 115 LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr-~~ei~~~i-dG--~~L~VIDTPGL~dt~~dq~~neeIL 190 (763)
T TIGR00993 115 LDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTS-VQEIEGLV-QG--VKIRVIDTPGLKSSASDQSKNEKIL 190 (763)
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceE-EEEEEEEE-CC--ceEEEEECCCCCccccchHHHHHHH
Confidence 4456899999999999999999999976 32 222 33333 22222333 44 467899999977532 11
Q ss_pred --HHHhcc--cCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCC--CCEEEEEecCCCCC
Q psy549 115 --RELSIS--TADAFVLVYAVDDASTWDVVKDLREQIVNKRGLM--VPIVVVGNKCELEF 168 (253)
Q Consensus 115 --~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~ 168 (253)
...++. ..|++|+|..++.......-..++..+....... .-+|||.|+.|...
T Consensus 191 k~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 191 SSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred HHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 111223 4799999988764322111123444444433322 46788899998764
No 326
>PRK12289 GTPase RsgA; Reviewed
Probab=98.81 E-value=2.6e-08 Score=84.40 Aligned_cols=93 Identities=14% Similarity=0.208 Sum_probs=67.6
Q ss_pred hhHHHhcccCCEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHHhcCCCcEEEe
Q psy549 113 AMRELSISTADAFVLVYAVDDAS-TWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIALYDWQCGFVEC 191 (253)
Q Consensus 113 ~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (253)
.+....+.++|.+++|+|+.++. .+..+..|+..... .++|+++|+||+|+..........+.+. .++.+++.+
T Consensus 81 ~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~---~~ip~ILVlNK~DLv~~~~~~~~~~~~~--~~g~~v~~i 155 (352)
T PRK12289 81 ELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES---TGLEIVLCLNKADLVSPTEQQQWQDRLQ--QWGYQPLFI 155 (352)
T ss_pred ceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEchhcCChHHHHHHHHHHH--hcCCeEEEE
Confidence 33344688999999999998775 44456777765533 5689999999999865422222333332 466789999
Q ss_pred ccCCCCCHHHHHHHHHHHH
Q psy549 192 SAKENYNIVQVFKELLAQA 210 (253)
Q Consensus 192 Sa~~~~~i~~l~~~l~~~~ 210 (253)
||+++.|++++++.+...+
T Consensus 156 SA~tg~GI~eL~~~L~~ki 174 (352)
T PRK12289 156 SVETGIGLEALLEQLRNKI 174 (352)
T ss_pred EcCCCCCHHHHhhhhccce
Confidence 9999999999999987643
No 327
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.77 E-value=5.1e-08 Score=73.46 Aligned_cols=95 Identities=21% Similarity=0.176 Sum_probs=64.5
Q ss_pred hhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHHhcCCCcEEEe
Q psy549 112 PAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIALYDWQCGFVEC 191 (253)
Q Consensus 112 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (253)
+.+....++++|++++|+|+.++..... ..+...+. ..++|+++|+||+|+........ ...+.. ..+.+++.+
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~-~~~~~~-~~~~~~~~i 76 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRS-RKLERYVL---ELGKKLLIVLNKADLVPKEVLEK-WKSIKE-SEGIPVVYV 76 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHHH---hCCCcEEEEEEhHHhCCHHHHHH-HHHHHH-hCCCcEEEE
Confidence 4556677888999999999987643222 12222221 23589999999999864321111 112333 345689999
Q ss_pred ccCCCCCHHHHHHHHHHHHHH
Q psy549 192 SAKENYNIVQVFKELLAQAKV 212 (253)
Q Consensus 192 Sa~~~~~i~~l~~~l~~~~~~ 212 (253)
|++++.|++++++.+.+.+..
T Consensus 77 Sa~~~~gi~~L~~~l~~~~~~ 97 (156)
T cd01859 77 SAKERLGTKILRRTIKELAKI 97 (156)
T ss_pred EccccccHHHHHHHHHHHHhh
Confidence 999999999999999887754
No 328
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.76 E-value=5.9e-08 Score=80.42 Aligned_cols=87 Identities=16% Similarity=0.130 Sum_probs=66.6
Q ss_pred HhcccCCEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHHhcCCCcEEEeccCC
Q psy549 117 LSISTADAFVLVYAVDDAS-TWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIALYDWQCGFVECSAKE 195 (253)
Q Consensus 117 ~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 195 (253)
..+.++|.+++|+|+.++. ++..+..|+..+.. .++|+++|+||+|+.+.. .......... ..+.+++.+|+++
T Consensus 74 ~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~---~~ip~iIVlNK~DL~~~~-~~~~~~~~~~-~~g~~v~~vSA~~ 148 (287)
T cd01854 74 VIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA---AGIEPVIVLTKADLLDDE-EEELELVEAL-ALGYPVLAVSAKT 148 (287)
T ss_pred eEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH---cCCCEEEEEEHHHCCChH-HHHHHHHHHH-hCCCeEEEEECCC
Confidence 3588999999999999987 77788888876654 458999999999997542 1111222222 4678999999999
Q ss_pred CCCHHHHHHHHHH
Q psy549 196 NYNIVQVFKELLA 208 (253)
Q Consensus 196 ~~~i~~l~~~l~~ 208 (253)
+.|+++++..+..
T Consensus 149 g~gi~~L~~~L~~ 161 (287)
T cd01854 149 GEGLDELREYLKG 161 (287)
T ss_pred CccHHHHHhhhcc
Confidence 9999999988764
No 329
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.75 E-value=1.3e-07 Score=78.80 Aligned_cols=158 Identities=20% Similarity=0.168 Sum_probs=100.3
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCCCCCCcccc---------------ceeeeeeeEEcCCCcEE------------
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKET---------------VEELHRGEYELPDGAQL------------ 98 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t---------------~~~~~~~~~~~~~~~~~------------ 98 (253)
....+.|+..|+-+.|||||+-.|..+........+ +.+.....+-+.|++.+
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~ 193 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA 193 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence 457899999999999999999998866543221111 11333334444333322
Q ss_pred --------EEEEEeCCCCCCChhhHHH--hcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCC
Q psy549 99 --------TLDILDTSGAYQFPAMREL--SISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEF 168 (253)
Q Consensus 99 --------~~~l~D~~g~~~~~~~~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 168 (253)
-+.|+|+.|++.|-..+.. +-+..|..+++..+++..+--. ...+-.+.. ..+|+++|+||+|+..
T Consensus 194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~t-kEHLgi~~a---~~lPviVvvTK~D~~~ 269 (527)
T COG5258 194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMT-KEHLGIALA---MELPVIVVVTKIDMVP 269 (527)
T ss_pred HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhh-hHhhhhhhh---hcCCEEEEEEecccCc
Confidence 2479999999998654433 4567899999999999765332 222222222 4589999999999977
Q ss_pred cccc----HHH-----------------------HHHHHHhcCCCcEEEeccCCCCCHHHHHHHHH
Q psy549 169 KDVR----REI-----------------------AETIALYDWQCGFVECSAKENYNIVQVFKELL 207 (253)
Q Consensus 169 ~~~~----~~~-----------------------~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 207 (253)
++.. +++ +........-+|+|.+|+.+|.|++-+.+.+.
T Consensus 270 ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~ 335 (527)
T COG5258 270 DDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFL 335 (527)
T ss_pred HHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHH
Confidence 6211 111 11111112246899999999999875554443
No 330
>KOG0082|consensus
Probab=98.74 E-value=9.7e-08 Score=79.80 Aligned_cols=116 Identities=15% Similarity=0.095 Sum_probs=76.8
Q ss_pred EEEEEEeCCCCCCChhhHHHhcccCCEEEEEEECCChhh-------HHHHHH---HHHHHHHh-cCCCCCEEEEEecCCC
Q psy549 98 LTLDILDTSGAYQFPAMRELSISTADAFVLVYAVDDAST-------WDVVKD---LREQIVNK-RGLMVPIVVVGNKCEL 166 (253)
Q Consensus 98 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s-------~~~~~~---~~~~~~~~-~~~~~piilv~nK~Dl 166 (253)
..+.++|++||..-+..|...+.+++++|+|.++++-.- -..+.. +.+.+... .=.+.++++++||.|+
T Consensus 195 ~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~DL 274 (354)
T KOG0082|consen 195 LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKKDL 274 (354)
T ss_pred CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecHHH
Confidence 578899999999999999999999999999999986321 111111 22222221 1145899999999997
Q ss_pred CCc----------------c-ccHHH----HHHHHHh---c-CCCcEEEeccCCCCCHHHHHHHHHHHHHHh
Q psy549 167 EFK----------------D-VRREI----AETIALY---D-WQCGFVECSAKENYNIVQVFKELLAQAKVQ 213 (253)
Q Consensus 167 ~~~----------------~-~~~~~----~~~~~~~---~-~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 213 (253)
... . -.++. ...+... . ..+-+..++|.+-.+|..+|+.+.+.+...
T Consensus 275 FeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~ 346 (354)
T KOG0082|consen 275 FEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQN 346 (354)
T ss_pred HHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHH
Confidence 543 0 11111 1122211 1 234456789999999999999999888655
No 331
>PRK00098 GTPase RsgA; Reviewed
Probab=98.71 E-value=6.8e-08 Score=80.48 Aligned_cols=86 Identities=20% Similarity=0.122 Sum_probs=62.6
Q ss_pred hcccCCEEEEEEECCChhhHHH-HHHHHHHHHHhcCCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCC
Q psy549 118 SISTADAFVLVYAVDDASTWDV-VKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKE 195 (253)
Q Consensus 118 ~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~ 195 (253)
...++|.+++|+|+.++.++.. +..|+..+.. .++|+++|+||+|+.+. .........+ . ..+.+++++||++
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~~~~~~~~~~-~-~~g~~v~~vSA~~ 151 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLEEARELLALY-R-AIGYDVLELSAKE 151 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHHHHHHHHHHH-H-HCCCeEEEEeCCC
Confidence 4689999999999988765444 4667665543 56899999999999633 2112222222 2 3567899999999
Q ss_pred CCCHHHHHHHHHH
Q psy549 196 NYNIVQVFKELLA 208 (253)
Q Consensus 196 ~~~i~~l~~~l~~ 208 (253)
+.|++++++.+..
T Consensus 152 g~gi~~L~~~l~g 164 (298)
T PRK00098 152 GEGLDELKPLLAG 164 (298)
T ss_pred CccHHHHHhhccC
Confidence 9999999988754
No 332
>KOG1491|consensus
Probab=98.70 E-value=8.8e-08 Score=78.57 Aligned_cols=88 Identities=17% Similarity=0.260 Sum_probs=68.6
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCCC-CCCccccceeeeeeeEEcCCC--------------cEEEEEEEeCCCCCC
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDRF-ISRYKETVEELHRGEYELPDG--------------AQLTLDILDTSGAYQ 110 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~--------------~~~~~~l~D~~g~~~ 110 (253)
..+.++|+|||.|+||||||+|.|++... +.+++.+|.+.....+.+++. .+..++++|++|.-.
T Consensus 17 ~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvk 96 (391)
T KOG1491|consen 17 DGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVK 96 (391)
T ss_pred CCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccccc
Confidence 44678999999999999999999998765 788999998888888887652 257789999998544
Q ss_pred Ch----hhHHH---hcccCCEEEEEEECCC
Q psy549 111 FP----AMREL---SISTADAFVLVYAVDD 133 (253)
Q Consensus 111 ~~----~~~~~---~~~~~d~~i~v~d~~~ 133 (253)
-. .+.+. -++.+|+++-|+++.+
T Consensus 97 GAs~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 97 GASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred CcccCcCchHHHHHhhhhccceeEEEEecC
Confidence 22 22222 4678999999988754
No 333
>PRK12288 GTPase RsgA; Reviewed
Probab=98.68 E-value=1.9e-07 Score=79.14 Aligned_cols=87 Identities=15% Similarity=0.105 Sum_probs=66.8
Q ss_pred hcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccc---cHHHHHHHHHhcCCCcEEEeccC
Q psy549 118 SISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDV---RREIAETIALYDWQCGFVECSAK 194 (253)
Q Consensus 118 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~Sa~ 194 (253)
...++|.+++|+++....++..+..|+..... .++|+++|+||+|+..... .......+. ..+.+++++||+
T Consensus 117 iaANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~--~~g~~v~~vSA~ 191 (347)
T PRK12288 117 IAANIDQIVIVSAVLPELSLNIIDRYLVACET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYR--NIGYRVLMVSSH 191 (347)
T ss_pred EEEEccEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCcHHHHHHHHHHHHHH--hCCCeEEEEeCC
Confidence 35779999999999988889889999875543 5689999999999975421 122222222 356789999999
Q ss_pred CCCCHHHHHHHHHHH
Q psy549 195 ENYNIVQVFKELLAQ 209 (253)
Q Consensus 195 ~~~~i~~l~~~l~~~ 209 (253)
++.|++++++.+...
T Consensus 192 tg~GideL~~~L~~k 206 (347)
T PRK12288 192 TGEGLEELEAALTGR 206 (347)
T ss_pred CCcCHHHHHHHHhhC
Confidence 999999999998764
No 334
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.64 E-value=1.7e-07 Score=79.27 Aligned_cols=83 Identities=18% Similarity=0.032 Sum_probs=65.5
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCCC--CCCccccceeeeeeeEEcCCCc--------------EEEEEEEeCCCCCCCh-
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDRF--ISRYKETVEELHRGEYELPDGA--------------QLTLDILDTSGAYQFP- 112 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~--------------~~~~~l~D~~g~~~~~- 112 (253)
++++|+|.|++|||||++.+++... ..+|+.+|.....+.+.++|.. +..+.+.|.||...-.
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7999999999999999999998765 4678888888888888886632 2457899999965422
Q ss_pred ------hhHHHhcccCCEEEEEEECC
Q psy549 113 ------AMRELSISTADAFVLVYAVD 132 (253)
Q Consensus 113 ------~~~~~~~~~~d~~i~v~d~~ 132 (253)
......++.+|++++|.+..
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 23334678899999999985
No 335
>KOG3887|consensus
Probab=98.63 E-value=2.7e-07 Score=72.33 Aligned_cols=159 Identities=19% Similarity=0.240 Sum_probs=96.2
Q ss_pred cceEEEECCCCCCHHHHHHHHHhCCCCCCcc--ccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhh---HHHhcccCC
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYDRFISRYK--ETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAM---RELSISTAD 123 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~---~~~~~~~~d 123 (253)
..+|+++|...+||||+-....+...+.+.. ..+...... .+ .+..+.+++||.||+-.+-.- ....++++.
T Consensus 27 kp~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d--~i-s~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~g 103 (347)
T KOG3887|consen 27 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRD--HI-SNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVG 103 (347)
T ss_pred CceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHh--hh-hhhhcceEEeecCCccccCCCccCHHHHHhccC
Confidence 3569999999999999887766654432211 011111111 11 123578999999998765322 245788999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHH--hcCCCCCEEEEEecCCCCCcc--------ccHHHHHHHHHh---cCCCcEEE
Q psy549 124 AFVLVYAVDDASTWDVVKDLREQIVN--KRGLMVPIVVVGNKCELEFKD--------VRREIAETIALY---DWQCGFVE 190 (253)
Q Consensus 124 ~~i~v~d~~~~~s~~~~~~~~~~~~~--~~~~~~piilv~nK~Dl~~~~--------~~~~~~~~~~~~---~~~~~~~~ 190 (253)
+.++|.|+-+.- .+.+..+...+.+ +..+++.+=+++.|.|...++ +.+...+.++.. ...+.++.
T Consensus 104 ALifvIDaQddy-~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~L 182 (347)
T KOG3887|consen 104 ALIFVIDAQDDY-MEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYL 182 (347)
T ss_pred eEEEEEechHHH-HHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEE
Confidence 999999987642 2333433333333 345788999999999976652 112222333332 23345666
Q ss_pred eccCCCCCHHHHHHHHHHHHHH
Q psy549 191 CSAKENYNIVQVFKELLAQAKV 212 (253)
Q Consensus 191 ~Sa~~~~~i~~l~~~l~~~~~~ 212 (253)
||..+ ..|.|.|..+.+.+--
T Consensus 183 TSIyD-HSIfEAFSkvVQkLip 203 (347)
T KOG3887|consen 183 TSIYD-HSIFEAFSKVVQKLIP 203 (347)
T ss_pred eeecc-hHHHHHHHHHHHHHhh
Confidence 66654 4688888887776543
No 336
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.62 E-value=9e-08 Score=70.88 Aligned_cols=52 Identities=23% Similarity=0.285 Sum_probs=37.1
Q ss_pred eEEEECCCCCCHHHHHHHHHhCCCC--CCccccceeeeeeeEEcCCCcEEEEEEEeCCCC
Q psy549 51 RVVVMGGARVGKSSIISQFLYDRFI--SRYKETVEELHRGEYELPDGAQLTLDILDTSGA 108 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~ 108 (253)
+++|+|.+|+|||||+|++.+.... .....++.. ...+.+ ++ .+.+|||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~--~~~~~~-~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKH--FQTIFL-TP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccc--eEEEEe-CC---CEEEEECCCc
Confidence 8999999999999999999987753 222333332 333444 33 4689999995
No 337
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.61 E-value=9.6e-08 Score=73.02 Aligned_cols=56 Identities=29% Similarity=0.394 Sum_probs=40.5
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCCC--CCCccccceeeeeeeEEcCCCcEEEEEEEeCCCC
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDRF--ISRYKETVEELHRGEYELPDGAQLTLDILDTSGA 108 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~ 108 (253)
...++|+++|.||+|||||+|++.+... ....+++|...... .+ +. .+.++||||.
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~--~~-~~---~~~l~DtPGi 172 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEV--HL-DK---KVKLLDSPGI 172 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEE--Ee-CC---CEEEEECcCC
Confidence 4458999999999999999999998664 44555555543332 23 22 4789999983
No 338
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.58 E-value=5.6e-07 Score=74.86 Aligned_cols=117 Identities=16% Similarity=0.176 Sum_probs=68.4
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCCCCCCc----------cccceeeeeeeEEcCCCcEEEEEEEeCCCCCCCh-----
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDRFISRY----------KETVEELHRGEYELPDGAQLTLDILDTSGAYQFP----- 112 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~----------~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~----- 112 (253)
-.++|+++|++|.|||||+|.|++.....+. .++..-.........++..+.+++.||||-.++-
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~ 101 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKC 101 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccccc
Confidence 4689999999999999999999987543221 1122222222222336778899999999943321
Q ss_pred ---------hhHHHhc-------c-------cCCEEEEEEECCCh-hhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCC
Q psy549 113 ---------AMRELSI-------S-------TADAFVLVYAVDDA-STWDVVKDLREQIVNKRGLMVPIVVVGNKCELEF 168 (253)
Q Consensus 113 ---------~~~~~~~-------~-------~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 168 (253)
.....++ + .+++++|...++.- -+-.++..+. .+ ...+-+|=|+.|+|...
T Consensus 102 we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk-~l----s~~vNlIPVI~KaD~lT 176 (373)
T COG5019 102 WEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMK-RL----SKRVNLIPVIAKADTLT 176 (373)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHH-HH----hcccCeeeeeeccccCC
Confidence 1111111 1 25788887765432 1112222221 11 23467777888999876
Q ss_pred c
Q psy549 169 K 169 (253)
Q Consensus 169 ~ 169 (253)
.
T Consensus 177 ~ 177 (373)
T COG5019 177 D 177 (373)
T ss_pred H
Confidence 5
No 339
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.57 E-value=1.3e-07 Score=71.38 Aligned_cols=55 Identities=22% Similarity=0.286 Sum_probs=38.6
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCCC--CCCccccceeeeeeeEEcCCCcEEEEEEEeCCCC
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDRF--ISRYKETVEELHRGEYELPDGAQLTLDILDTSGA 108 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~ 108 (253)
..++|+|+|.||+|||||+|++.+... ....+.++.... .+.. +. .+.++||||.
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~--~~~~-~~---~~~liDtPGi 157 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQ--YITL-MK---RIYLIDCPGV 157 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEE--EEEc-CC---CEEEEECcCC
Confidence 457899999999999999999998664 344455554332 2233 22 2569999983
No 340
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.57 E-value=4.3e-07 Score=68.47 Aligned_cols=91 Identities=16% Similarity=0.174 Sum_probs=59.7
Q ss_pred HhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHHhcCCCcEEEeccCCC
Q psy549 117 LSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIALYDWQCGFVECSAKEN 196 (253)
Q Consensus 117 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 196 (253)
..+.++|.+++|.|+.++..... ..+...+ .....++|+++|+||+|+............+.+ .....++.+||+.+
T Consensus 4 ~~l~~aD~il~VvD~~~p~~~~~-~~i~~~l-~~~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~-~~~~~~~~iSa~~~ 80 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMGTRC-KHVEEYL-KKEKPHKHLIFVLNKCDLVPTWVTARWVKILSK-EYPTIAFHASINNP 80 (157)
T ss_pred HhhhhCCEEEEEEECCCCccccC-HHHHHHH-HhccCCCCEEEEEEchhcCCHHHHHHHHHHHhc-CCcEEEEEeecccc
Confidence 45678999999999988643111 1222222 222345899999999998654322333444443 23233578999999
Q ss_pred CCHHHHHHHHHHHH
Q psy549 197 YNIVQVFKELLAQA 210 (253)
Q Consensus 197 ~~i~~l~~~l~~~~ 210 (253)
.|++++++.+.+.+
T Consensus 81 ~~~~~L~~~l~~~~ 94 (157)
T cd01858 81 FGKGSLIQLLRQFS 94 (157)
T ss_pred ccHHHHHHHHHHHH
Confidence 99999999987765
No 341
>KOG2486|consensus
Probab=98.56 E-value=1.1e-07 Score=76.02 Aligned_cols=157 Identities=12% Similarity=0.100 Sum_probs=91.6
Q ss_pred CCCCCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccc-cceeeeeee-EEcCCCcEEEEEEEeCCC----------CCC
Q psy549 43 VGLQKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKE-TVEELHRGE-YELPDGAQLTLDILDTSG----------AYQ 110 (253)
Q Consensus 43 ~~~~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~-t~~~~~~~~-~~~~~~~~~~~~l~D~~g----------~~~ 110 (253)
..+....++++++|.+|+|||+|+|-++.......... ..+...... +.+ + -.+.++|.|| ..+
T Consensus 130 D~Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v-~---~~~~~vDlPG~~~a~y~~~~~~d 205 (320)
T KOG2486|consen 130 DCPKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHV-G---KSWYEVDLPGYGRAGYGFELPAD 205 (320)
T ss_pred cCCCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeec-c---ceEEEEecCCcccccCCccCcch
Confidence 44556789999999999999999999998665332222 223233322 233 2 2567999999 222
Q ss_pred ChhhHHHhcccCC---EEEEEEECCChh-hHHH-HHHHHHHHHHhcCCCCCEEEEEecCCCCCc------cccHHHHHHH
Q psy549 111 FPAMRELSISTAD---AFVLVYAVDDAS-TWDV-VKDLREQIVNKRGLMVPIVVVGNKCELEFK------DVRREIAETI 179 (253)
Q Consensus 111 ~~~~~~~~~~~~d---~~i~v~d~~~~~-s~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~------~~~~~~~~~~ 179 (253)
+..+...++.+.+ -++++.|++-+. ..+. ...|+. + .++|+.+|.||+|.... .....+...+
T Consensus 206 ~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~g---e---~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f 279 (320)
T KOG2486|consen 206 WDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLG---E---NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINF 279 (320)
T ss_pred HhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHh---h---cCCCeEEeeehhhhhhhccccccCccccceeeh
Confidence 3444444544333 333444544332 1111 122322 2 56999999999996533 1111121212
Q ss_pred HHh-----cCCCcEEEeccCCCCCHHHHHHHHHHH
Q psy549 180 ALY-----DWQCGFVECSAKENYNIVQVFKELLAQ 209 (253)
Q Consensus 180 ~~~-----~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 209 (253)
... ....|++.+|+.++.|+++++-.|...
T Consensus 280 ~~l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~ 314 (320)
T KOG2486|consen 280 QGLIRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQL 314 (320)
T ss_pred hhccccceeccCCceeeecccccCceeeeeehhhh
Confidence 111 224577889999999999988666554
No 342
>KOG1954|consensus
Probab=98.56 E-value=1e-06 Score=73.20 Aligned_cols=122 Identities=19% Similarity=0.203 Sum_probs=74.8
Q ss_pred CCCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccce--eeeeeeEEcC------------C----------------
Q psy549 45 LQKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE--ELHRGEYELP------------D---------------- 94 (253)
Q Consensus 45 ~~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~--~~~~~~~~~~------------~---------------- 94 (253)
......-|+++|+-..||||||++|+.+.++..-+.... +.+...+.=+ |
T Consensus 54 dfd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~afl 133 (532)
T KOG1954|consen 54 DFDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFL 133 (532)
T ss_pred ccccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHH
Confidence 345667899999999999999999999888643222211 2222222110 1
Q ss_pred ----------CcEEEEEEEeCCCCCC-----------ChhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCC
Q psy549 95 ----------GAQLTLDILDTSGAYQ-----------FPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGL 153 (253)
Q Consensus 95 ----------~~~~~~~l~D~~g~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~ 153 (253)
..--.++++||||.-. |.....-+...+|.++++||+..-+--+.....+..+ ...
T Consensus 134 nRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aL---kG~ 210 (532)
T KOG1954|consen 134 NRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDAL---KGH 210 (532)
T ss_pred HHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHh---hCC
Confidence 0012468999999432 2333334778899999999987543222333333333 333
Q ss_pred CCCEEEEEecCCCCCc
Q psy549 154 MVPIVVVGNKCELEFK 169 (253)
Q Consensus 154 ~~piilv~nK~Dl~~~ 169 (253)
.--+-+|+||+|..+.
T Consensus 211 EdkiRVVLNKADqVdt 226 (532)
T KOG1954|consen 211 EDKIRVVLNKADQVDT 226 (532)
T ss_pred cceeEEEeccccccCH
Confidence 3466788999997654
No 343
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.55 E-value=1.6e-06 Score=75.72 Aligned_cols=139 Identities=15% Similarity=0.112 Sum_probs=90.2
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEE
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAF 125 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 125 (253)
..+.+-++++|+||+||||||+.+..... ..+.+...+.+++..|..-+++|.++|. ....+ .....-+|.+
T Consensus 66 ~PPPfIvavvGPpGtGKsTLirSlVrr~t-----k~ti~~i~GPiTvvsgK~RRiTflEcp~--Dl~~m-iDvaKIaDLV 137 (1077)
T COG5192 66 LPPPFIVAVVGPPGTGKSTLIRSLVRRFT-----KQTIDEIRGPITVVSGKTRRITFLECPS--DLHQM-IDVAKIADLV 137 (1077)
T ss_pred CCCCeEEEeecCCCCChhHHHHHHHHHHH-----HhhhhccCCceEEeecceeEEEEEeChH--HHHHH-HhHHHhhhee
Confidence 45678899999999999999999886432 1222344455555578888999999983 22222 2345669999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccH-HHHHH-----HHHhcCCCcEEEeccCC
Q psy549 126 VLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRR-EIAET-----IALYDWQCGFVECSAKE 195 (253)
Q Consensus 126 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~-~~~~~-----~~~~~~~~~~~~~Sa~~ 195 (253)
++++|.+-+-..+. ..+++.+..+. -..++.|++..|+....... ...+. +.....+..+|.+|...
T Consensus 138 lLlIdgnfGfEMET-mEFLnil~~HG--mPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV~ 210 (1077)
T COG5192 138 LLLIDGNFGFEMET-MEFLNILISHG--MPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGVE 210 (1077)
T ss_pred EEEeccccCceehH-HHHHHHHhhcC--CCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEecccc
Confidence 99999987644333 44555544432 24567888999997763222 22222 33334567788887743
No 344
>KOG2655|consensus
Probab=98.52 E-value=2e-06 Score=72.15 Aligned_cols=141 Identities=16% Similarity=0.205 Sum_probs=78.5
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCCCCCC--------ccccceeeeee-eEEcCCCcEEEEEEEeCCCCCCC-------
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDRFISR--------YKETVEELHRG-EYELPDGAQLTLDILDTSGAYQF------- 111 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~--------~~~t~~~~~~~-~~~~~~~~~~~~~l~D~~g~~~~------- 111 (253)
-.+.++++|++|.|||||+|.|+...+..+ .+..+...... ....++|..+.++++||||-.+.
T Consensus 20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w 99 (366)
T KOG2655|consen 20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCW 99 (366)
T ss_pred CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccc
Confidence 358999999999999999999997654322 11111222222 22333678899999999993321
Q ss_pred h-------hhHHH-----------hcc--cCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCcc-
Q psy549 112 P-------AMREL-----------SIS--TADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKD- 170 (253)
Q Consensus 112 ~-------~~~~~-----------~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~- 170 (253)
. +.... .+. .+++++|...++.- .+..+.- .+.......+.+|-|+.|+|....+
T Consensus 100 ~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~Di---~~Mk~l~~~vNiIPVI~KaD~lT~~E 175 (366)
T KOG2655|consen 100 RPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLDI---EFMKKLSKKVNLIPVIAKADTLTKDE 175 (366)
T ss_pred hhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhhH---HHHHHHhccccccceeeccccCCHHH
Confidence 1 11111 112 36788887776532 1111111 1111122446778888999987762
Q ss_pred ---ccHHHHHHHHHhcCCCcEEEeccC
Q psy549 171 ---VRREIAETIALYDWQCGFVECSAK 194 (253)
Q Consensus 171 ---~~~~~~~~~~~~~~~~~~~~~Sa~ 194 (253)
....+.+.+. ...++++.....
T Consensus 176 l~~~K~~I~~~i~--~~nI~vf~fp~~ 200 (366)
T KOG2655|consen 176 LNQFKKRIRQDIE--EHNIKVFDFPTD 200 (366)
T ss_pred HHHHHHHHHHHHH--HcCcceecCCCC
Confidence 2233333333 355665555443
No 345
>KOG1143|consensus
Probab=98.50 E-value=4e-07 Score=75.67 Aligned_cols=152 Identities=16% Similarity=0.218 Sum_probs=93.9
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCCCCCCcccc-----------------------ce-eeeeeeEEcC---------
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDRFISRYKET-----------------------VE-ELHRGEYELP--------- 93 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t-----------------------~~-~~~~~~~~~~--------- 93 (253)
--+++++++|...+|||||+-.|..+......... .. +...+.+.+.
T Consensus 165 fievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~ 244 (591)
T KOG1143|consen 165 FIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIV 244 (591)
T ss_pred ceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHH
Confidence 34789999999999999999888754442111000 00 1111111111
Q ss_pred CCcEEEEEEEeCCCCCCChhhHHHhcc--cCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccc
Q psy549 94 DGAQLTLDILDTSGAYQFPAMRELSIS--TADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDV 171 (253)
Q Consensus 94 ~~~~~~~~l~D~~g~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 171 (253)
+...--++|+|.+|+.+|...+-..+. -.|.+.+|.+++..-.... ...+-.+.. .++|++++++|+|+...+-
T Consensus 245 e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT-rEHLgl~~A---L~iPfFvlvtK~Dl~~~~~ 320 (591)
T KOG1143|consen 245 EKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT-REHLGLIAA---LNIPFFVLVTKMDLVDRQG 320 (591)
T ss_pred hhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc-HHHHHHHHH---hCCCeEEEEEeeccccchh
Confidence 111234689999999998766654333 2688899999887644222 333333333 5689999999999876521
Q ss_pred cH-----------------------------HHHHHHHHhcCCCcEEEeccCCCCCHHHHH
Q psy549 172 RR-----------------------------EIAETIALYDWQCGFVECSAKENYNIVQVF 203 (253)
Q Consensus 172 ~~-----------------------------~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 203 (253)
.. ..++.++. ....|+|.+|+.+|.|++-+-
T Consensus 321 ~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s-~nivPif~vSsVsGegl~ll~ 380 (591)
T KOG1143|consen 321 LKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCS-GNIVPIFAVSSVSGEGLRLLR 380 (591)
T ss_pred HHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhcc-CCceeEEEEeecCccchhHHH
Confidence 11 12233333 455789999999999976443
No 346
>KOG0463|consensus
Probab=98.48 E-value=7.7e-07 Score=74.11 Aligned_cols=153 Identities=17% Similarity=0.270 Sum_probs=90.2
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCCCCCC------------------ccccce------eeeeeeEEcCC-------
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDRFISR------------------YKETVE------ELHRGEYELPD------- 94 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~------------------~~~t~~------~~~~~~~~~~~------- 94 (253)
+--+++|+++|+..+|||||+..|.++..... -.+... +.....+.-+|
T Consensus 130 DF~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~Ld 209 (641)
T KOG0463|consen 130 DFIEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLD 209 (641)
T ss_pred cceeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccc
Confidence 44578999999999999999988775443210 000000 11111111111
Q ss_pred ------CcEEEEEEEeCCCCCCChhhHHHhc--ccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCC
Q psy549 95 ------GAQLTLDILDTSGAYQFPAMRELSI--STADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCEL 166 (253)
Q Consensus 95 ------~~~~~~~l~D~~g~~~~~~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 166 (253)
...-.++|+|.+|+++|-..+-.-+ +-.|...+++-++...- .-....+-.... ..+|+++|++|+|+
T Consensus 210 WvkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIi-GmTKEHLgLALa---L~VPVfvVVTKIDM 285 (641)
T KOG0463|consen 210 WVKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGII-GMTKEHLGLALA---LHVPVFVVVTKIDM 285 (641)
T ss_pred ceeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccce-eccHHhhhhhhh---hcCcEEEEEEeecc
Confidence 1122378999999999865443222 23577777776665421 111222222222 44899999999999
Q ss_pred CCccccHHHHHHHHHh----------------------------cCCCcEEEeccCCCCCHHHH
Q psy549 167 EFKDVRREIAETIALY----------------------------DWQCGFVECSAKENYNIVQV 202 (253)
Q Consensus 167 ~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~Sa~~~~~i~~l 202 (253)
....+.++-.+.+... ..-+|+|.+|..+|.|+.-+
T Consensus 286 CPANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LL 349 (641)
T KOG0463|consen 286 CPANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLL 349 (641)
T ss_pred CcHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHH
Confidence 8875555544443321 12267899999999998644
No 347
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.47 E-value=7.6e-07 Score=76.15 Aligned_cols=95 Identities=19% Similarity=0.144 Sum_probs=66.7
Q ss_pred CCCChhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHH----HHHhc
Q psy549 108 AYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAET----IALYD 183 (253)
Q Consensus 108 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~----~~~~~ 183 (253)
.++|..+...++..++++++|+|+.+.. ..|...+.... .+.|+++|+||+|+.......+.... +.. .
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~-~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k-~ 122 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFV-GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAK-E 122 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHh-CCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHH-H
Confidence 4567777777888999999999997643 22444444432 35799999999999765433333332 233 2
Q ss_pred CCC---cEEEeccCCCCCHHHHHHHHHHH
Q psy549 184 WQC---GFVECSAKENYNIVQVFKELLAQ 209 (253)
Q Consensus 184 ~~~---~~~~~Sa~~~~~i~~l~~~l~~~ 209 (253)
.++ .++.+||+++.|++++++.|.+.
T Consensus 123 ~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 123 LGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred cCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 333 48999999999999999998664
No 348
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.45 E-value=1.5e-06 Score=65.41 Aligned_cols=84 Identities=19% Similarity=0.085 Sum_probs=56.2
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHHhcCCCcEEEeccCCCCCHHHH
Q psy549 123 DAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIALYDWQCGFVECSAKENYNIVQV 202 (253)
Q Consensus 123 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 202 (253)
|++++|+|+.++.+... .++.. ......++|+++|+||+|+............+.. .....++.+|++++.|++++
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~-~~~~~~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~-~~~~~ii~vSa~~~~gi~~L 76 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIER-VLIKEKGKKLILVLNKADLVPKEVLRKWLAYLRH-SYPTIPFKISATNGQGIEKK 76 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHH-HHHhcCCCCEEEEEechhcCCHHHHHHHHHHHHh-hCCceEEEEeccCCcChhhH
Confidence 78999999988755432 22221 1112256899999999998643221222223333 34567899999999999999
Q ss_pred HHHHHHHH
Q psy549 203 FKELLAQA 210 (253)
Q Consensus 203 ~~~l~~~~ 210 (253)
++.+.+..
T Consensus 77 ~~~i~~~~ 84 (155)
T cd01849 77 ESAFTKQT 84 (155)
T ss_pred HHHHHHHh
Confidence 99987764
No 349
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.43 E-value=7.7e-06 Score=65.35 Aligned_cols=88 Identities=16% Similarity=0.160 Sum_probs=58.2
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhC--CC--CCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChh------hHH
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYD--RF--ISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPA------MRE 116 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~--~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~------~~~ 116 (253)
.+..-|+|+|++++|||+|+|+|++. .+ ......+|.........+..+....+.++||+|...... ...
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~ 84 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARL 84 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHH
Confidence 45567899999999999999999998 65 233445655555555554333446789999999664322 111
Q ss_pred Hhcc--cCCEEEEEEECCCh
Q psy549 117 LSIS--TADAFVLVYAVDDA 134 (253)
Q Consensus 117 ~~~~--~~d~~i~v~d~~~~ 134 (253)
..+. -++++|+..+.+..
T Consensus 85 ~~l~~llss~~i~n~~~~~~ 104 (224)
T cd01851 85 FALATLLSSVLIYNSWETIL 104 (224)
T ss_pred HHHHHHHhCEEEEeccCccc
Confidence 1222 37888887776543
No 350
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.42 E-value=3.5e-07 Score=71.23 Aligned_cols=55 Identities=27% Similarity=0.325 Sum_probs=37.9
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCCC----------CCCccccceeeeeeeEEcCCCcEEEEEEEeCCCC
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDRF----------ISRYKETVEELHRGEYELPDGAQLTLDILDTSGA 108 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~~----------~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~ 108 (253)
....|+|+|.+|+|||||+|+|.+... .+..++||.+.....+ +. .+.++||||.
T Consensus 126 ~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~---~~---~~~~~DtPG~ 190 (190)
T cd01855 126 KGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPL---GN---GKKLYDTPGI 190 (190)
T ss_pred cCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEec---CC---CCEEEeCcCC
Confidence 346899999999999999999997442 2334445554433333 21 3689999983
No 351
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.41 E-value=6.4e-07 Score=73.93 Aligned_cols=56 Identities=23% Similarity=0.386 Sum_probs=40.7
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCCC--CCCccccceeeeeeeEEcCCCcEEEEEEEeCCCC
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDRF--ISRYKETVEELHRGEYELPDGAQLTLDILDTSGA 108 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~ 108 (253)
...++|+|+|.||+|||||+|+|.+... +...+.++.... .+.+ +. .+.++||||.
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~--~~~~-~~---~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQ--WIKL-SD---GLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceE--EEEe-CC---CEEEEECCCc
Confidence 3568999999999999999999998663 344455554433 3333 22 4689999997
No 352
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.41 E-value=7.8e-07 Score=73.81 Aligned_cols=58 Identities=22% Similarity=0.335 Sum_probs=42.1
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCCC--CCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCC
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDRF--ISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQ 110 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~ 110 (253)
...++|+|+|.||||||||+|+|.+... +...+++|.... .+.. +. .+.++||||...
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~--~~~~-~~---~~~l~DtPGi~~ 178 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQ--WIKL-GK---GLELLDTPGILW 178 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEE--EEEe-CC---cEEEEECCCcCC
Confidence 4568999999999999999999998664 344555555443 3333 32 367999999643
No 353
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.37 E-value=1.1e-06 Score=67.34 Aligned_cols=55 Identities=22% Similarity=0.337 Sum_probs=38.7
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCCCC--CCccccceeeeeeeEEcCCCcEEEEEEEeCCCC
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDRFI--SRYKETVEELHRGEYELPDGAQLTLDILDTSGA 108 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~ 108 (253)
..++|+++|.+|+|||||+|++.+..+. ...+.++..... +.+ + ..+.+|||||.
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~--~~~-~---~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQW--IKI-S---PGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEE--EEe-c---CCEEEEECCCC
Confidence 4479999999999999999999987752 233334433322 333 2 24789999995
No 354
>KOG1547|consensus
Probab=98.37 E-value=3.5e-06 Score=66.20 Aligned_cols=61 Identities=23% Similarity=0.316 Sum_probs=41.8
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCCCC---------CCccccceeeeeeeEEcCCCcEEEEEEEeCCCC
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDRFI---------SRYKETVEELHRGEYELPDGAQLTLDILDTSGA 108 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~~~---------~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~ 108 (253)
-.++|+++|.+|.|||||+|.++..... ..++.|++-.....+...++...+++++||||-
T Consensus 45 F~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGf 114 (336)
T KOG1547|consen 45 FDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGF 114 (336)
T ss_pred CceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCc
Confidence 4689999999999999999999864431 123333332222222223677889999999993
No 355
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.36 E-value=1.1e-06 Score=66.02 Aligned_cols=56 Identities=32% Similarity=0.417 Sum_probs=40.4
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCCC--CCCccccceeeeeeeEEcCCCcEEEEEEEeCCCC
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDRF--ISRYKETVEELHRGEYELPDGAQLTLDILDTSGA 108 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~ 108 (253)
....+|+++|.+|+|||||+|++.+... ....+.++...... .+ +. .+.++||||.
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~--~~-~~---~~~liDtPG~ 155 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEV--KL-DN---KIKLLDTPGI 155 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEE--Ee-cC---CEEEEECCCC
Confidence 3568899999999999999999998653 34445566554433 23 21 4789999983
No 356
>KOG0460|consensus
Probab=98.36 E-value=1.3e-06 Score=71.87 Aligned_cols=146 Identities=20% Similarity=0.153 Sum_probs=88.1
Q ss_pred CCCCcceEEEECCCCCCHHHHHHHHHh-------CCC------CCCccccce--eeeeeeEEcCCCcEEEEEEEeCCCCC
Q psy549 45 LQKDKRRVVVMGGARVGKSSIISQFLY-------DRF------ISRYKETVE--ELHRGEYELPDGAQLTLDILDTSGAY 109 (253)
Q Consensus 45 ~~~~~~~I~iiG~~~~GKSsLi~~l~~-------~~~------~~~~~~t~~--~~~~~~~~~~~~~~~~~~l~D~~g~~ 109 (253)
..++.++|.-||+..-|||||--++.. .++ ......-.+ ......+.+ ....-.+-=.|+||+.
T Consensus 50 R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveY-eTa~RhYaH~DCPGHA 128 (449)
T KOG0460|consen 50 RDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEY-ETAKRHYAHTDCPGHA 128 (449)
T ss_pred cCCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeee-eccccccccCCCCchH
Confidence 357889999999999999999988772 111 010000001 222223333 2222345567999998
Q ss_pred CChhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc-----cccHHHHHHHHHh--
Q psy549 110 QFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-----DVRREIAETIALY-- 182 (253)
Q Consensus 110 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-----~~~~~~~~~~~~~-- 182 (253)
+|-...-.-..+.|++|+|+.++|..--+.-++++. ..+. --..+++++||.|+.++ -+.-++.+.+...
T Consensus 129 DYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLL-ArQV--GV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf 205 (449)
T KOG0460|consen 129 DYIKNMITGAAQMDGAILVVAATDGPMPQTREHLLL-ARQV--GVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGF 205 (449)
T ss_pred HHHHHhhcCccccCceEEEEEcCCCCCcchHHHHHH-HHHc--CCceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCC
Confidence 886665555667899999999999865444333322 1221 22467888899999855 2233344444442
Q ss_pred -cCCCcEEEeccC
Q psy549 183 -DWQCGFVECSAK 194 (253)
Q Consensus 183 -~~~~~~~~~Sa~ 194 (253)
+...|++.-||+
T Consensus 206 ~Gd~~PvI~GSAL 218 (449)
T KOG0460|consen 206 DGDNTPVIRGSAL 218 (449)
T ss_pred CCCCCCeeecchh
Confidence 235688876654
No 357
>KOG0464|consensus
Probab=98.36 E-value=3.2e-07 Score=77.22 Aligned_cols=126 Identities=15% Similarity=0.174 Sum_probs=94.6
Q ss_pred CCCCCCCCCCcceEEEECCCCCCHHHHHHHHHh--CCC------C-----CCcc----ccceeeeeeeEEcCCCcEEEEE
Q psy549 39 SGTGVGLQKDKRRVVVMGGARVGKSSIISQFLY--DRF------I-----SRYK----ETVEELHRGEYELPDGAQLTLD 101 (253)
Q Consensus 39 ~~~~~~~~~~~~~I~iiG~~~~GKSsLi~~l~~--~~~------~-----~~~~----~t~~~~~~~~~~~~~~~~~~~~ 101 (253)
++...++.....+|+|+.+..+||||...+++. +.. . .+.. ..........+.+ |.+..++.
T Consensus 27 hs~~~p~~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~f-dwkg~rin 105 (753)
T KOG0464|consen 27 HSIINPAIAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNF-DWKGHRIN 105 (753)
T ss_pred cCCCCCchhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeec-ccccceEe
Confidence 344455666777999999999999999999882 111 0 0000 0011555666777 88889999
Q ss_pred EEeCCCCCCChhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc
Q psy549 102 ILDTSGAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK 169 (253)
Q Consensus 102 l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 169 (253)
++||||+-.|.-..+..++--|+++.|||.+.+..-+.+.-|.+.- ..++|-..++||.|....
T Consensus 106 lidtpghvdf~leverclrvldgavav~dasagve~qtltvwrqad----k~~ip~~~finkmdk~~a 169 (753)
T KOG0464|consen 106 LIDTPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQAD----KFKIPAHCFINKMDKLAA 169 (753)
T ss_pred eecCCCcceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhcc----ccCCchhhhhhhhhhhhh
Confidence 9999999999999999999999999999999876656666676532 256899999999997654
No 358
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.33 E-value=3.8e-05 Score=65.48 Aligned_cols=153 Identities=20% Similarity=0.311 Sum_probs=89.2
Q ss_pred CcceEEEECCCCCCHHHHHHHHHh-----------------CCCCCC----ccccce----eeeeeeEEcCCCcEEEEEE
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLY-----------------DRFISR----YKETVE----ELHRGEYELPDGAQLTLDI 102 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~-----------------~~~~~~----~~~t~~----~~~~~~~~~~~~~~~~~~l 102 (253)
..+-|+++||..+||||||.+|+. ++.+.. .+.|++ ......+.+.++..+++.+
T Consensus 16 GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRL 95 (492)
T PF09547_consen 16 GDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRL 95 (492)
T ss_pred CceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEE
Confidence 468899999999999999999992 222211 122232 2333456666788999999
Q ss_pred EeCCC--------CCC-----------C---hhhHHH-------hccc--CCEEEEEEECCC----hhhHHH-HHHHHHH
Q psy549 103 LDTSG--------AYQ-----------F---PAMREL-------SIST--ADAFVLVYAVDD----ASTWDV-VKDLREQ 146 (253)
Q Consensus 103 ~D~~g--------~~~-----------~---~~~~~~-------~~~~--~d~~i~v~d~~~----~~s~~~-~~~~~~~ 146 (253)
+|+.| ..+ | -.+..+ .++. .=++++.-|.+- ++++.. -++...+
T Consensus 96 iDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~E 175 (492)
T PF09547_consen 96 IDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEE 175 (492)
T ss_pred EeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHH
Confidence 99988 100 0 011111 1111 124444444331 223322 2233444
Q ss_pred HHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHHhcCCCcEEEeccCC--CCCHHHHHHH
Q psy549 147 IVNKRGLMVPIVVVGNKCELEFKDVRREIAETIALYDWQCGFVECSAKE--NYNIVQVFKE 205 (253)
Q Consensus 147 ~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~--~~~i~~l~~~ 205 (253)
+.. -++|+++++|-.+ +......+.+..+.. ..+++++++++.. ...|..+|+.
T Consensus 176 Lk~---igKPFvillNs~~-P~s~et~~L~~eL~e-kY~vpVlpvnc~~l~~~DI~~Il~~ 231 (492)
T PF09547_consen 176 LKE---IGKPFVILLNSTK-PYSEETQELAEELEE-KYDVPVLPVNCEQLREEDITRILEE 231 (492)
T ss_pred HHH---hCCCEEEEEeCCC-CCCHHHHHHHHHHHH-HhCCcEEEeehHHcCHHHHHHHHHH
Confidence 444 5689999999886 334566667777777 7789998887743 2344444443
No 359
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.28 E-value=4.6e-05 Score=56.50 Aligned_cols=148 Identities=15% Similarity=0.166 Sum_probs=83.2
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCC-C--------------CCCC
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTS-G--------------AYQF 111 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~-g--------------~~~~ 111 (253)
...++|+|.|+||||||||+.++...--... .+..-++...+.- +|..+-|.+.|.. | ..+|
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g--~kvgGf~t~EVR~-gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY 79 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKG--YKVGGFITPEVRE-GGKRIGFKIVDLATGEEGILARVGFSRPRVGKY 79 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHhcC--ceeeeEEeeeeec-CCeEeeeEEEEccCCceEEEEEcCCCCcccceE
Confidence 3468999999999999999998874211110 1233455555555 6666667777766 2 1112
Q ss_pred h-----------hhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHH
Q psy549 112 P-----------AMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIA 180 (253)
Q Consensus 112 ~-----------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 180 (253)
. .....+++.||++|+ |---+-.+. ...+...+........|++.++.+-+- ....+.+.
T Consensus 80 ~V~v~~le~i~~~al~rA~~~aDvIII--DEIGpMElk-s~~f~~~ve~vl~~~kpliatlHrrsr------~P~v~~ik 150 (179)
T COG1618 80 GVNVEGLEEIAIPALRRALEEADVIII--DEIGPMELK-SKKFREAVEEVLKSGKPLIATLHRRSR------HPLVQRIK 150 (179)
T ss_pred EeeHHHHHHHhHHHHHHHhhcCCEEEE--ecccchhhc-cHHHHHHHHHHhcCCCcEEEEEecccC------ChHHHHhh
Confidence 1 111123445666655 433332222 244555555544467898888887653 12334444
Q ss_pred HhcCCCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy549 181 LYDWQCGFVECSAKENYNIVQVFKELLAQAK 211 (253)
Q Consensus 181 ~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 211 (253)
. ...+.+| .+..|=+.++..+...+.
T Consensus 151 ~-~~~v~v~----lt~~NR~~i~~~Il~~L~ 176 (179)
T COG1618 151 K-LGGVYVF----LTPENRNRILNEILSVLK 176 (179)
T ss_pred h-cCCEEEE----EccchhhHHHHHHHHHhc
Confidence 4 3444343 455555688888777664
No 360
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.28 E-value=3.1e-06 Score=63.66 Aligned_cols=55 Identities=27% Similarity=0.294 Sum_probs=36.1
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCCCC--CCccccceeeeeeeEEcCCCcEEEEEEEeCCCC
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDRFI--SRYKETVEELHRGEYELPDGAQLTLDILDTSGA 108 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~ 108 (253)
...+|+++|.+|+|||||+|++.+.... .....++.. ...+.. +. .+.+|||||.
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~--~~~~~~-~~---~~~~~DtpGi 156 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKG--EQLVKI-TS---KIYLLDTPGV 156 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeee--eEEEEc-CC---CEEEEECcCC
Confidence 4578999999999999999999975532 112222211 112223 32 5789999983
No 361
>KOG0448|consensus
Probab=98.27 E-value=2.5e-05 Score=69.86 Aligned_cols=144 Identities=19% Similarity=0.265 Sum_probs=81.7
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCCC-CCCccccceee--------eee-----------------------------
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDRF-ISRYKETVEEL--------HRG----------------------------- 88 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~--------~~~----------------------------- 88 (253)
....||+|.|..++||||++|+++..+. ++...+++.-+ ...
T Consensus 107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~ 186 (749)
T KOG0448|consen 107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL 186 (749)
T ss_pred hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence 5678999999999999999999997664 33333332100 000
Q ss_pred ------eEEcCCCc----EEEEEEEeCCCCCC---ChhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCC
Q psy549 89 ------EYELPDGA----QLTLDILDTSGAYQ---FPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMV 155 (253)
Q Consensus 89 ------~~~~~~~~----~~~~~l~D~~g~~~---~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 155 (253)
.+.++++. .-.+.++|.||.+- ..........++|++|+|.++.+...... .+++... ...+.
T Consensus 187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se-k~Ff~~v---s~~Kp 262 (749)
T KOG0448|consen 187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE-KQFFHKV---SEEKP 262 (749)
T ss_pred CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH-HHHHHHh---hccCC
Confidence 01111110 01346889999553 44445557788999999998876544322 2222222 22345
Q ss_pred CEEEEEecCCCCCc--cccHHHHHHHHHh------cCCCcEEEeccC
Q psy549 156 PIVVVGNKCELEFK--DVRREIAETIALY------DWQCGFVECSAK 194 (253)
Q Consensus 156 piilv~nK~Dl~~~--~~~~~~~~~~~~~------~~~~~~~~~Sa~ 194 (253)
-++++.||.|...+ +..+.+.++.... .-.-.++.+|++
T Consensus 263 niFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~ 309 (749)
T KOG0448|consen 263 NIFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAK 309 (749)
T ss_pred cEEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEecc
Confidence 67777799997654 2223333332210 123457888865
No 362
>PRK01889 GTPase RsgA; Reviewed
Probab=98.27 E-value=9.2e-06 Score=69.38 Aligned_cols=85 Identities=12% Similarity=0.018 Sum_probs=62.3
Q ss_pred hcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHHhcCCCcEEEeccCCCC
Q psy549 118 SISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIALYDWQCGFVECSAKENY 197 (253)
Q Consensus 118 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 197 (253)
...++|.+++|+++..+-....+.+++..... .+++.++|+||+|+.+. ..+..+.+.....+.+++.+|++++.
T Consensus 109 iaANvD~vliV~s~~p~~~~~~ldr~L~~a~~---~~i~piIVLNK~DL~~~--~~~~~~~~~~~~~g~~Vi~vSa~~g~ 183 (356)
T PRK01889 109 IAANVDTVFIVCSLNHDFNLRRIERYLALAWE---SGAEPVIVLTKADLCED--AEEKIAEVEALAPGVPVLAVSALDGE 183 (356)
T ss_pred EEEeCCEEEEEEecCCCCChhHHHHHHHHHHH---cCCCEEEEEEChhcCCC--HHHHHHHHHHhCCCCcEEEEECCCCc
Confidence 36789999999999755454456666665555 45788999999999754 11233444443567889999999999
Q ss_pred CHHHHHHHHH
Q psy549 198 NIVQVFKELL 207 (253)
Q Consensus 198 ~i~~l~~~l~ 207 (253)
|++++..++.
T Consensus 184 gl~~L~~~L~ 193 (356)
T PRK01889 184 GLDVLAAWLS 193 (356)
T ss_pred cHHHHHHHhh
Confidence 9999888874
No 363
>KOG0466|consensus
Probab=98.25 E-value=1.2e-06 Score=71.09 Aligned_cols=110 Identities=19% Similarity=0.176 Sum_probs=69.8
Q ss_pred EEEEEeCCCCCCChhhHHHhcccCCEEEEEEECCC--hhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHH
Q psy549 99 TLDILDTSGAYQFPAMRELSISTADAFVLVYAVDD--ASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIA 176 (253)
Q Consensus 99 ~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~ 176 (253)
.+.|+|+||++-.......-..-.|+++++...+. ++.-. ...+..+..+ .-..++++-||+|+.......+..
T Consensus 126 HVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQT--sEHLaaveiM--~LkhiiilQNKiDli~e~~A~eq~ 201 (466)
T KOG0466|consen 126 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQT--SEHLAAVEIM--KLKHIIILQNKIDLIKESQALEQH 201 (466)
T ss_pred EEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCch--hhHHHHHHHh--hhceEEEEechhhhhhHHHHHHHH
Confidence 35799999998766555443344577777776654 32211 1112222211 115788899999998763333333
Q ss_pred HHHHHh-----cCCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy549 177 ETIALY-----DWQCGFVECSAKENYNIVQVFKELLAQAKV 212 (253)
Q Consensus 177 ~~~~~~-----~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 212 (253)
+.+.+. ..+.|++++||.-..||+-+.++|.+.+..
T Consensus 202 e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPv 242 (466)
T KOG0466|consen 202 EQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPV 242 (466)
T ss_pred HHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCC
Confidence 333321 236799999999999999999999998843
No 364
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.24 E-value=2e-06 Score=72.37 Aligned_cols=57 Identities=33% Similarity=0.437 Sum_probs=40.7
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCCC--CCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCC
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDRF--ISRYKETVEELHRGEYELPDGAQLTLDILDTSGAY 109 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 109 (253)
...++++|+|-||||||||||+|.+... ++..+++|.......+. + .+.++||||.-
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~--~----~i~LlDtPGii 188 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLD--D----GIYLLDTPGII 188 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcC--C----CeEEecCCCcC
Confidence 4558899999999999999999999775 34444444433333332 2 26899999954
No 365
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.18 E-value=4.4e-06 Score=63.91 Aligned_cols=91 Identities=13% Similarity=0.011 Sum_probs=60.5
Q ss_pred hhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHHhcCCCcEEEec
Q psy549 113 AMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIALYDWQCGFVECS 192 (253)
Q Consensus 113 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 192 (253)
......+.++|.+++|+|+.++...... .+...+ .+.|+++|+||+|+.+........+.+.. ....++.+|
T Consensus 11 ~~~~~~i~~aD~il~v~D~~~~~~~~~~-~i~~~~-----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~--~~~~vi~iS 82 (171)
T cd01856 11 RQIKEKLKLVDLVIEVRDARIPLSSRNP-LLEKIL-----GNKPRIIVLNKADLADPKKTKKWLKYFES--KGEKVLFVN 82 (171)
T ss_pred HHHHHHHhhCCEEEEEeeccCccCcCCh-hhHhHh-----cCCCEEEEEehhhcCChHHHHHHHHHHHh--cCCeEEEEE
Confidence 4445578899999999999876432221 111111 24799999999998643211122222222 245689999
Q ss_pred cCCCCCHHHHHHHHHHHHH
Q psy549 193 AKENYNIVQVFKELLAQAK 211 (253)
Q Consensus 193 a~~~~~i~~l~~~l~~~~~ 211 (253)
++++.|++++.+.+...+.
T Consensus 83 a~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 83 AKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred CCCcccHHHHHHHHHHHHH
Confidence 9999999999999988764
No 366
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.18 E-value=1.5e-05 Score=65.88 Aligned_cols=91 Identities=14% Similarity=0.070 Sum_probs=61.7
Q ss_pred HHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHHhcCCCcEEEeccC
Q psy549 115 RELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIALYDWQCGFVECSAK 194 (253)
Q Consensus 115 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 194 (253)
....+..+|++++|.|+.++.+... .++..+. .+.|+++|+||+|+.+........+.+.. .+.+++.+|++
T Consensus 15 ~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l----~~kp~IiVlNK~DL~~~~~~~~~~~~~~~--~~~~vi~iSa~ 86 (276)
T TIGR03596 15 IKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR----GNKPRLIVLNKADLADPAVTKQWLKYFEE--KGIKALAINAK 86 (276)
T ss_pred HHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH----CCCCEEEEEEccccCCHHHHHHHHHHHHH--cCCeEEEEECC
Confidence 3456888999999999987644322 1111111 24799999999998643212222223322 34578999999
Q ss_pred CCCCHHHHHHHHHHHHHHh
Q psy549 195 ENYNIVQVFKELLAQAKVQ 213 (253)
Q Consensus 195 ~~~~i~~l~~~l~~~~~~~ 213 (253)
++.|+.++.+.+.+.+...
T Consensus 87 ~~~gi~~L~~~i~~~~~~~ 105 (276)
T TIGR03596 87 KGKGVKKIIKAAKKLLKEK 105 (276)
T ss_pred CcccHHHHHHHHHHHHHHh
Confidence 9999999999998887554
No 367
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.17 E-value=8.2e-06 Score=60.33 Aligned_cols=77 Identities=14% Similarity=0.048 Sum_probs=50.4
Q ss_pred HHhcccCCEEEEEEECCChhhHH--HHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHHhcCCCcEEEecc
Q psy549 116 ELSISTADAFVLVYAVDDASTWD--VVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIALYDWQCGFVECSA 193 (253)
Q Consensus 116 ~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 193 (253)
...+..+|++++|+|+.++.+.. .+..|+.. . ..++|+++|+||+|+..........+.+.. .+..++++|+
T Consensus 6 ~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~---~-~~~k~~iivlNK~DL~~~~~~~~~~~~~~~--~~~~ii~iSa 79 (141)
T cd01857 6 WRVVERSDIVVQIVDARNPLLFRPPDLERYVKE---V-DPRKKNILLLNKADLLTEEQRKAWAEYFKK--EGIVVVFFSA 79 (141)
T ss_pred HHHHhhCCEEEEEEEccCCcccCCHHHHHHHHh---c-cCCCcEEEEEechhcCCHHHHHHHHHHHHh--cCCeEEEEEe
Confidence 34578899999999998876543 23333332 1 146899999999998654322222333333 3467899999
Q ss_pred CCCCC
Q psy549 194 KENYN 198 (253)
Q Consensus 194 ~~~~~ 198 (253)
.++.+
T Consensus 80 ~~~~~ 84 (141)
T cd01857 80 LKENA 84 (141)
T ss_pred cCCCc
Confidence 98764
No 368
>KOG0467|consensus
Probab=98.17 E-value=9.6e-06 Score=73.12 Aligned_cols=114 Identities=15% Similarity=0.223 Sum_probs=76.7
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCC--CCCCccccce------ee-------eeeeEEcCCCcEEEEEEEeCCCCCCC
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDR--FISRYKETVE------EL-------HRGEYELPDGAQLTLDILDTSGAYQF 111 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~--~~~~~~~t~~------~~-------~~~~~~~~~~~~~~~~l~D~~g~~~~ 111 (253)
...-+|+++-+..-|||||+..|+... +.+...+..+ +- ....+.. --..+.+.++|+||+-+|
T Consensus 7 ~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~-~~~~~~~nlidspghvdf 85 (887)
T KOG0467|consen 7 EGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISL-LHKDYLINLIDSPGHVDF 85 (887)
T ss_pred CceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeecccccc-ccCceEEEEecCCCccch
Confidence 345689999999999999999998543 2111111111 11 1111112 223567899999999999
Q ss_pred hhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCC
Q psy549 112 PAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCE 165 (253)
Q Consensus 112 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D 165 (253)
.+......+.+|+++++.|+..+.--+...-.++... .+...++|+||+|
T Consensus 86 ~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~----~~~~~~lvinkid 135 (887)
T KOG0467|consen 86 SSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWI----EGLKPILVINKID 135 (887)
T ss_pred hhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHH----ccCceEEEEehhh
Confidence 9999999999999999999987654333222222221 3456788999999
No 369
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=98.16 E-value=3.5e-06 Score=73.00 Aligned_cols=70 Identities=19% Similarity=0.175 Sum_probs=49.1
Q ss_pred EEEEEEeCCCCCCChhhHHHhcccCCEEEEEEECCChh----------hHHHHHHHHHHHHH-hcCCCCCEEEEEecCCC
Q psy549 98 LTLDILDTSGAYQFPAMRELSISTADAFVLVYAVDDAS----------TWDVVKDLREQIVN-KRGLMVPIVVVGNKCEL 166 (253)
Q Consensus 98 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl 166 (253)
..+.++|++|+...+..|..++.+++++|+|+++++-. .+..-...+..+.. ..-.+.|++|++||.|+
T Consensus 236 ~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~ 315 (389)
T PF00503_consen 236 RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDL 315 (389)
T ss_dssp EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHH
T ss_pred cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHH
Confidence 46799999999989999999999999999999986411 12221222333332 12246899999999995
Q ss_pred C
Q psy549 167 E 167 (253)
Q Consensus 167 ~ 167 (253)
.
T Consensus 316 f 316 (389)
T PF00503_consen 316 F 316 (389)
T ss_dssp H
T ss_pred H
Confidence 3
No 370
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.16 E-value=3.4e-05 Score=75.60 Aligned_cols=114 Identities=16% Similarity=0.203 Sum_probs=67.2
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCCCCCCc----ccc--ceeeeeeeEEcCCCcEEEEEEEeCCCCC--------CChhhH
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDRFISRY----KET--VEELHRGEYELPDGAQLTLDILDTSGAY--------QFPAMR 115 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~~~~~~----~~t--~~~~~~~~~~~~~~~~~~~~l~D~~g~~--------~~~~~~ 115 (253)
.=.+|||++|+||||+++.- +-.++-.. ..+ ......-...+ ..+ -.++||+|.. .....|
T Consensus 112 PWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf-~~~---avliDtaG~y~~~~~~~~~~~~~W 186 (1169)
T TIGR03348 112 PWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWF-TDE---AVLIDTAGRYTTQDSDPEEDAAAW 186 (1169)
T ss_pred CCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEe-cCC---EEEEcCCCccccCCCcccccHHHH
Confidence 45689999999999999875 44442111 000 00011111112 222 2488999932 233345
Q ss_pred HHhc---------ccCCEEEEEEECCChh-----hH----HHHHHHHHHHHHhcCCCCCEEEEEecCCCCC
Q psy549 116 ELSI---------STADAFVLVYAVDDAS-----TW----DVVKDLREQIVNKRGLMVPIVVVGNKCELEF 168 (253)
Q Consensus 116 ~~~~---------~~~d~~i~v~d~~~~~-----s~----~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 168 (253)
..++ +..+++|+++|+.+-- .. ..+...+.++.....-..||.+|+||+|+..
T Consensus 187 ~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 187 LGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhc
Confidence 4433 3479999999987532 11 1233345555555567899999999999764
No 371
>PRK12288 GTPase RsgA; Reviewed
Probab=98.13 E-value=3.4e-06 Score=71.55 Aligned_cols=56 Identities=29% Similarity=0.510 Sum_probs=35.4
Q ss_pred eEEEECCCCCCHHHHHHHHHhCCC--CCCccc-------cceeeeeeeEEcCCCcEEEEEEEeCCCCCCCh
Q psy549 51 RVVVMGGARVGKSSIISQFLYDRF--ISRYKE-------TVEELHRGEYELPDGAQLTLDILDTSGAYQFP 112 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~~~~--~~~~~~-------t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~ 112 (253)
.++|+|.+|||||||||+|++... +..... ||.. ..-+.++.+ ..++||||..++.
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~--~~l~~l~~~----~~liDTPGir~~~ 271 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTA--ARLYHFPHG----GDLIDSPGVREFG 271 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceee--EEEEEecCC----CEEEECCCCCccc
Confidence 479999999999999999997653 111111 2222 222333222 1489999987754
No 372
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.09 E-value=4.4e-05 Score=57.56 Aligned_cols=22 Identities=23% Similarity=0.428 Sum_probs=19.4
Q ss_pred eEEEECCCCCCHHHHHHHHHhC
Q psy549 51 RVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
-++++|..|+|||||+++++..
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 3679999999999999998865
No 373
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.07 E-value=3.9e-06 Score=62.94 Aligned_cols=24 Identities=38% Similarity=0.630 Sum_probs=21.9
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCC
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDR 73 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~ 73 (253)
-.++|+|++|||||||+|.|.+..
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 578999999999999999999864
No 374
>PRK14974 cell division protein FtsY; Provisional
Probab=98.02 E-value=2.4e-05 Score=65.99 Aligned_cols=95 Identities=11% Similarity=-0.002 Sum_probs=53.7
Q ss_pred EEEEEEeCCCCCCChhhH-H---Hh--cccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccc
Q psy549 98 LTLDILDTSGAYQFPAMR-E---LS--ISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDV 171 (253)
Q Consensus 98 ~~~~l~D~~g~~~~~~~~-~---~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 171 (253)
+.+.|+||+|........ . .+ ....|.+++|.|+.....- + .....+.... -.-.+|+||.|.... .
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~--~-~~a~~f~~~~---~~~giIlTKlD~~~~-~ 295 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDA--V-EQAREFNEAV---GIDGVILTKVDADAK-G 295 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhH--H-HHHHHHHhcC---CCCEEEEeeecCCCC-c
Confidence 467899999976532221 1 12 2257889999998765321 1 1122222111 235788999997543 1
Q ss_pred cHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHH
Q psy549 172 RREIAETIALYDWQCGFVECSAKENYNIVQVFK 204 (253)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 204 (253)
- .+..... ..+.|+.+++ +|.+++++..
T Consensus 296 G-~~ls~~~--~~~~Pi~~i~--~Gq~v~Dl~~ 323 (336)
T PRK14974 296 G-AALSIAY--VIGKPILFLG--VGQGYDDLIP 323 (336)
T ss_pred c-HHHHHHH--HHCcCEEEEe--CCCChhhccc
Confidence 1 1222222 2467887876 6888877653
No 375
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=98.01 E-value=0.00033 Score=58.84 Aligned_cols=101 Identities=14% Similarity=0.119 Sum_probs=61.7
Q ss_pred EEEEEEeCCCCCCChhhHHHhcc--------cCCEEEEEEECCChhhHHH-HHHHHHHHHHhcCCCCCEEEEEecCCCCC
Q psy549 98 LTLDILDTSGAYQFPAMRELSIS--------TADAFVLVYAVDDASTWDV-VKDLREQIVNKRGLMVPIVVVGNKCELEF 168 (253)
Q Consensus 98 ~~~~l~D~~g~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 168 (253)
+...++++.|.-.-......+.. ..|+++-|+|+..-..... +......-... .=++|+||+|+.+
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~-----AD~ivlNK~Dlv~ 159 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAF-----ADVIVLNKTDLVD 159 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHh-----CcEEEEecccCCC
Confidence 45568888887776555544333 2477888998875433221 22222222222 3388999999988
Q ss_pred ccccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHH
Q psy549 169 KDVRREIAETIALYDWQCGFVECSAKENYNIVQVFK 204 (253)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 204 (253)
..........+.+.+...+++.++. .+.+..+++.
T Consensus 160 ~~~l~~l~~~l~~lnp~A~i~~~~~-~~~~~~~ll~ 194 (323)
T COG0523 160 AEELEALEARLRKLNPRARIIETSY-GDVDLAELLD 194 (323)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEccc-cCCCHHHhhc
Confidence 7545555566666677888888887 4445554443
No 376
>PRK12289 GTPase RsgA; Reviewed
Probab=98.00 E-value=1e-05 Score=68.70 Aligned_cols=55 Identities=35% Similarity=0.477 Sum_probs=35.9
Q ss_pred eEEEECCCCCCHHHHHHHHHhCCC--CCCccc-------cceeeeeeeEEcCCCcEEEEEEEeCCCCCCC
Q psy549 51 RVVVMGGARVGKSSIISQFLYDRF--ISRYKE-------TVEELHRGEYELPDGAQLTLDILDTSGAYQF 111 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~~~~--~~~~~~-------t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~ 111 (253)
.++|+|++|||||||||+|++..- +..... ||... ..+.++++. .++||||...+
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~--~l~~l~~g~----~liDTPG~~~~ 237 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHV--ELFELPNGG----LLADTPGFNQP 237 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCcee--EEEECCCCc----EEEeCCCcccc
Confidence 489999999999999999997543 222222 33333 333342332 58999997554
No 377
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.99 E-value=1.7e-05 Score=61.07 Aligned_cols=87 Identities=17% Similarity=0.119 Sum_probs=48.2
Q ss_pred EEEEEEeCCCCCCChhhHHH-----hcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCcc-c
Q psy549 98 LTLDILDTSGAYQFPAMREL-----SISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKD-V 171 (253)
Q Consensus 98 ~~~~l~D~~g~~~~~~~~~~-----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~ 171 (253)
....|+++.|......+... ..-..+.+|.|.|+..-.........+...... .=++|+||+|+.+.. .
T Consensus 85 ~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~-----ADvIvlnK~D~~~~~~~ 159 (178)
T PF02492_consen 85 PDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAF-----ADVIVLNKIDLVSDEQK 159 (178)
T ss_dssp -SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT------SEEEEE-GGGHHHH--
T ss_pred cCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchh-----cCEEEEeccccCChhhH
Confidence 46677888886665555100 122358899999986643223333333333332 228889999987765 2
Q ss_pred cHHHHHHHHHhcCCCcEE
Q psy549 172 RREIAETIALYDWQCGFV 189 (253)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~ 189 (253)
.+...+.+...+...+++
T Consensus 160 i~~~~~~ir~lnp~a~Iv 177 (178)
T PF02492_consen 160 IERVREMIRELNPKAPIV 177 (178)
T ss_dssp HHHHHHHHHHH-TTSEEE
T ss_pred HHHHHHHHHHHCCCCEEe
Confidence 255556666656666654
No 378
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.99 E-value=1.1e-05 Score=69.17 Aligned_cols=56 Identities=32% Similarity=0.402 Sum_probs=39.5
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCC-------CCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCC
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDR-------FISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQF 111 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~-------~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~ 111 (253)
.+|.|+|.+|||||||+|++++.. ..+..+.||...... .+ ++ .+.++||||....
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~--~~-~~---~~~l~DtPG~~~~ 217 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEI--PL-DD---GHSLYDTPGIINS 217 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEE--Ee-CC---CCEEEECCCCCCh
Confidence 589999999999999999999743 234555666554432 33 22 2469999997654
No 379
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.98 E-value=3.2e-05 Score=64.91 Aligned_cols=95 Identities=9% Similarity=0.025 Sum_probs=53.6
Q ss_pred EEEEEEEeCCCCCCChhh----HHHhc--------ccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecC
Q psy549 97 QLTLDILDTSGAYQFPAM----RELSI--------STADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKC 164 (253)
Q Consensus 97 ~~~~~l~D~~g~~~~~~~----~~~~~--------~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~ 164 (253)
.+.+.++||||....... ...+. ...+..++|.|++... ..+.+. ..+... --+..+|+||.
T Consensus 196 ~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~a-~~f~~~---~~~~giIlTKl 269 (318)
T PRK10416 196 GIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQA-KAFHEA---VGLTGIILTKL 269 (318)
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHHH-HHHHhh---CCCCEEEEECC
Confidence 357889999997543222 11111 2367788999998643 233321 222211 13557889999
Q ss_pred CCCCccccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHH
Q psy549 165 ELEFKDVRREIAETIALYDWQCGFVECSAKENYNIVQVF 203 (253)
Q Consensus 165 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 203 (253)
|.... .-....... ..+.|+..++ +|.+++++-
T Consensus 270 D~t~~--~G~~l~~~~--~~~~Pi~~v~--~Gq~~~Dl~ 302 (318)
T PRK10416 270 DGTAK--GGVVFAIAD--ELGIPIKFIG--VGEGIDDLQ 302 (318)
T ss_pred CCCCC--ccHHHHHHH--HHCCCEEEEe--CCCChhhCc
Confidence 95433 112222233 3478888887 677777654
No 380
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.98 E-value=4.9e-05 Score=63.12 Aligned_cols=91 Identities=14% Similarity=0.122 Sum_probs=61.7
Q ss_pred HHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHHhcCCCcEEEeccC
Q psy549 115 RELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIALYDWQCGFVECSAK 194 (253)
Q Consensus 115 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 194 (253)
....+..+|++++|.|+.++.+... .++.... .+.|+++|+||+|+.+........+.+.. .+.+++.+|++
T Consensus 18 l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~----~~kp~iiVlNK~DL~~~~~~~~~~~~~~~--~~~~vi~vSa~ 89 (287)
T PRK09563 18 IKENLKLVDVVIEVLDARIPLSSEN--PMIDKII----GNKPRLLILNKSDLADPEVTKKWIEYFEE--QGIKALAINAK 89 (287)
T ss_pred HHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh----CCCCEEEEEEchhcCCHHHHHHHHHHHHH--cCCeEEEEECC
Confidence 3456788999999999987654322 1122211 25799999999998643212222233322 24678999999
Q ss_pred CCCCHHHHHHHHHHHHHHh
Q psy549 195 ENYNIVQVFKELLAQAKVQ 213 (253)
Q Consensus 195 ~~~~i~~l~~~l~~~~~~~ 213 (253)
++.|+.++.+.+...+...
T Consensus 90 ~~~gi~~L~~~l~~~l~~~ 108 (287)
T PRK09563 90 KGQGVKKILKAAKKLLKEK 108 (287)
T ss_pred CcccHHHHHHHHHHHHHHH
Confidence 9999999999988887554
No 381
>PRK13796 GTPase YqeH; Provisional
Probab=97.96 E-value=5.6e-05 Score=64.86 Aligned_cols=84 Identities=21% Similarity=0.193 Sum_probs=55.8
Q ss_pred cccCC-EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHH----HHHHhcCCC---cEEE
Q psy549 119 ISTAD-AFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAE----TIALYDWQC---GFVE 190 (253)
Q Consensus 119 ~~~~d-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~----~~~~~~~~~---~~~~ 190 (253)
+..++ .+++|+|+.+.. ..|...+.... .+.|+++|+||+|+.......+... .+.+ ..++ .++.
T Consensus 66 i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~-~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k-~~g~~~~~v~~ 138 (365)
T PRK13796 66 IGDSDALVVNVVDIFDFN-----GSWIPGLHRFV-GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAK-ELGLRPVDVVL 138 (365)
T ss_pred hcccCcEEEEEEECccCC-----CchhHHHHHHh-CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHH-hcCCCcCcEEE
Confidence 34445 889999987743 22334444332 3579999999999976433333222 2233 2233 6899
Q ss_pred eccCCCCCHHHHHHHHHHH
Q psy549 191 CSAKENYNIVQVFKELLAQ 209 (253)
Q Consensus 191 ~Sa~~~~~i~~l~~~l~~~ 209 (253)
+||+++.|++++++.|.+.
T Consensus 139 vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 139 ISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred EECCCCCCHHHHHHHHHHh
Confidence 9999999999999999765
No 382
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.93 E-value=2.1e-05 Score=63.68 Aligned_cols=55 Identities=31% Similarity=0.317 Sum_probs=35.5
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCCCC--CCc-------cccceeeeeeeEEcCCCcEEEEEEEeCCCCCCC
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDRFI--SRY-------KETVEELHRGEYELPDGAQLTLDILDTSGAYQF 111 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~~~--~~~-------~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~ 111 (253)
-.++|+|.+|||||||+|+|.+.... .+. ..||...... .+ ++. .++||||...+
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~--~l-~~~----~liDtPG~~~~ 184 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELF--HF-HGG----LIADTPGFNEF 184 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEE--Ec-CCc----EEEeCCCcccc
Confidence 47899999999999999999975431 111 1233333222 22 221 59999997654
No 383
>PRK13796 GTPase YqeH; Provisional
Probab=97.92 E-value=1.4e-05 Score=68.50 Aligned_cols=56 Identities=32% Similarity=0.453 Sum_probs=38.7
Q ss_pred cceEEEECCCCCCHHHHHHHHHhCC------C-CCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCC
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYDR------F-ISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQ 110 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~~------~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~ 110 (253)
..++.|+|.+|||||||+|+|+... . .+..+.||.+... +.+.++ ..++||||...
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~--~~l~~~----~~l~DTPGi~~ 222 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIE--IPLDDG----SFLYDTPGIIH 222 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEE--EEcCCC----cEEEECCCccc
Confidence 3589999999999999999998542 1 3455566655433 333222 36999999743
No 384
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.90 E-value=1.6e-05 Score=66.05 Aligned_cols=25 Identities=36% Similarity=0.525 Sum_probs=22.3
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCCC
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDRF 74 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~~ 74 (253)
-.++++|++|+|||||+|.|++...
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~ 186 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLD 186 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhh
Confidence 5799999999999999999997553
No 385
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.89 E-value=0.00015 Score=55.15 Aligned_cols=135 Identities=18% Similarity=0.220 Sum_probs=67.8
Q ss_pred eEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeC-CC---------------CCCChhh
Q psy549 51 RVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDT-SG---------------AYQFPAM 114 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~-~g---------------~~~~~~~ 114 (253)
+|+|.|++|+|||||+.+++..--... -...-++...+.- ++..+-|.+.|. .| ...|...
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~--~~v~Gf~t~evr~-~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~ 77 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKG--LPVGGFYTEEVRE-NGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVD 77 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTC--GGEEEEEEEEEET-TSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccC--CccceEEeecccC-CCceEEEEEEECcCCCccccccccccccccCCCEEEc
Confidence 689999999999999999885321000 0112233333333 555555666666 22 1112211
Q ss_pred HHH-------h----cccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecC-CCCCccccHHHHHHHHHh
Q psy549 115 REL-------S----ISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKC-ELEFKDVRREIAETIALY 182 (253)
Q Consensus 115 ~~~-------~----~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~-Dl~~~~~~~~~~~~~~~~ 182 (253)
... . +..+| ++|+|=--+--+ ....|.+.+....+.+.|++.++.+. +. ...+.+..
T Consensus 78 ~e~fe~~~~~~L~~~~~~~~--liviDEIG~mEl-~~~~F~~~v~~~l~s~~~vi~vv~~~~~~-------~~l~~i~~- 146 (168)
T PF03266_consen 78 LESFEEIGLPALRNALSSSD--LIVIDEIGKMEL-KSPGFREAVEKLLDSNKPVIGVVHKRSDN-------PFLEEIKR- 146 (168)
T ss_dssp HHHHHCCCCCCCHHHHHCCH--EEEE---STTCC-C-CHHHHHHHHHHCTTSEEEEE--SS--S-------CCHHHHHT-
T ss_pred HHHHHHHHHHHHHhhcCCCC--EEEEeccchhhh-cCHHHHHHHHHHHcCCCcEEEEEecCCCc-------HHHHHHHh-
Confidence 111 1 12344 566653322111 12335555555444778999998777 32 23455665
Q ss_pred cCCCcEEEeccCCCCCH
Q psy549 183 DWQCGFVECSAKENYNI 199 (253)
Q Consensus 183 ~~~~~~~~~Sa~~~~~i 199 (253)
.+++.+++++..+...+
T Consensus 147 ~~~~~i~~vt~~NRd~l 163 (168)
T PF03266_consen 147 RPDVKIFEVTEENRDAL 163 (168)
T ss_dssp TTTSEEEE--TTTCCCH
T ss_pred CCCcEEEEeChhHHhhH
Confidence 67788899887766655
No 386
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.86 E-value=9.5e-05 Score=60.80 Aligned_cols=96 Identities=13% Similarity=0.030 Sum_probs=55.0
Q ss_pred EEEEEEEeCCCCCCChhhHHH-------hc-----ccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecC
Q psy549 97 QLTLDILDTSGAYQFPAMREL-------SI-----STADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKC 164 (253)
Q Consensus 97 ~~~~~l~D~~g~~~~~~~~~~-------~~-----~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~ 164 (253)
.+.+.|+||+|.......... .. ...|..++|.|++... +.+.. ...+.... -+.-+|+||.
T Consensus 154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~~~-~~~f~~~~---~~~g~IlTKl 227 (272)
T TIGR00064 154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NALEQ-AKVFNEAV---GLTGIILTKL 227 (272)
T ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHHHH-HHHHHhhC---CCCEEEEEcc
Confidence 357889999997654333211 11 1378999999997542 23322 22222211 2558889999
Q ss_pred CCCCccccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHH
Q psy549 165 ELEFKDVRREIAETIALYDWQCGFVECSAKENYNIVQVFK 204 (253)
Q Consensus 165 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 204 (253)
|.... .-........ .+.|+.+++ +|.+++++-.
T Consensus 228 De~~~--~G~~l~~~~~--~~~Pi~~~~--~Gq~~~dl~~ 261 (272)
T TIGR00064 228 DGTAK--GGIILSIAYE--LKLPIKFIG--VGEKIDDLAP 261 (272)
T ss_pred CCCCC--ccHHHHHHHH--HCcCEEEEe--CCCChHhCcc
Confidence 97543 1122222222 357877777 6777776543
No 387
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.84 E-value=0.00038 Score=58.51 Aligned_cols=97 Identities=9% Similarity=0.059 Sum_probs=55.6
Q ss_pred EEEEEEeCCCCCCChhhHHHhcc--------cCCEEEEEEECCChhhHHH-HHHHHHHHHHhcCCCCCEEEEEecCCCCC
Q psy549 98 LTLDILDTSGAYQFPAMRELSIS--------TADAFVLVYAVDDASTWDV-VKDLREQIVNKRGLMVPIVVVGNKCELEF 168 (253)
Q Consensus 98 ~~~~l~D~~g~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 168 (253)
....++++.|..........++. ..++++.|+|+.+-..... .......+. . .=++|+||+|+.+
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~-~-----AD~IvlnK~Dl~~ 164 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVG-Y-----ADRILLTKTDVAG 164 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHH-h-----CCEEEEeccccCC
Confidence 45568888888776655554422 2478999999865322111 111111121 1 3388899999886
Q ss_pred ccccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHH
Q psy549 169 KDVRREIAETIALYDWQCGFVECSAKENYNIVQVF 203 (253)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 203 (253)
.. +.....+...+...+++.+.- .......+|
T Consensus 165 ~~--~~~~~~l~~lnp~a~i~~~~~-~~v~~~~l~ 196 (318)
T PRK11537 165 EA--EKLRERLARINARAPVYTVVH-GDIDLSLLF 196 (318)
T ss_pred HH--HHHHHHHHHhCCCCEEEEecc-CCCCHHHHh
Confidence 42 455666666667777776542 223444444
No 388
>KOG0469|consensus
Probab=97.83 E-value=0.0001 Score=63.93 Aligned_cols=118 Identities=19% Similarity=0.327 Sum_probs=78.1
Q ss_pred CCCCcceEEEECCCCCCHHHHHHHHHhCC-CC-------CCccccceeeeeeeEEc----------------------CC
Q psy549 45 LQKDKRRVVVMGGARVGKSSIISQFLYDR-FI-------SRYKETVEELHRGEYEL----------------------PD 94 (253)
Q Consensus 45 ~~~~~~~I~iiG~~~~GKSsLi~~l~~~~-~~-------~~~~~t~~~~~~~~~~~----------------------~~ 94 (253)
...+..++.+|.+..-|||||...|.... +. ..+..|..+.+..-+++ .|
T Consensus 15 k~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d 94 (842)
T KOG0469|consen 15 KKKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGD 94 (842)
T ss_pred cccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCC
Confidence 34566789999999999999999988321 11 11111111222111111 14
Q ss_pred CcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCC
Q psy549 95 GAQLTLDILDTSGAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCEL 166 (253)
Q Consensus 95 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 166 (253)
+..+-+.++|.||+-.|.+.....++-.|++++|.|..+..-.+.-.-+.+.+.. ++--++|.||.|-
T Consensus 95 ~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~E----RIkPvlv~NK~DR 162 (842)
T KOG0469|consen 95 GNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAE----RIKPVLVMNKMDR 162 (842)
T ss_pred CcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHh----hccceEEeehhhH
Confidence 5567889999999999999999999999999999998876443332223333333 2444677999994
No 389
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.82 E-value=0.00017 Score=53.78 Aligned_cols=58 Identities=26% Similarity=0.252 Sum_probs=36.1
Q ss_pred EEEEEEEeCCCCCCChhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCC
Q psy549 97 QLTLDILDTSGAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCE 165 (253)
Q Consensus 97 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D 165 (253)
.+.+.|+||+|... ....++..+|-+++|..+.-.+...- . ...+.. ..-++++||+|
T Consensus 91 ~~D~iiIDtaG~~~---~~~~~~~~Ad~~ivv~tpe~~D~y~~-~--k~~~~~-----~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQ---SEVDIASMADTTVVVMAPGAGDDIQA-I--KAGIME-----IADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccCh---hhhhHHHhCCEEEEEECCCchhHHHH-h--hhhHhh-----hcCEEEEeCCC
Confidence 46788999988642 22347888999999998773322111 1 111222 23488899987
No 390
>KOG1424|consensus
Probab=97.79 E-value=3.6e-05 Score=66.78 Aligned_cols=57 Identities=23% Similarity=0.212 Sum_probs=41.2
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCCC--CCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCC
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDRF--ISRYKETVEELHRGEYELPDGAQLTLDILDTSGAY 109 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 109 (253)
...+.|++||-|||||||+||.|++.+- ++..++-|..++...+.- .+.+.|+||.-
T Consensus 312 ~~~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls~------~v~LCDCPGLV 370 (562)
T KOG1424|consen 312 KDVVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLSP------SVCLCDCPGLV 370 (562)
T ss_pred CceeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcCC------CceecCCCCcc
Confidence 3479999999999999999999999885 344444444444443332 35789999943
No 391
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.78 E-value=4e-05 Score=62.84 Aligned_cols=58 Identities=29% Similarity=0.406 Sum_probs=35.6
Q ss_pred eEEEECCCCCCHHHHHHHHHhCCC--CCCcccc-----ceeeeeeeEEcCCCcEEEEEEEeCCCCCCCh
Q psy549 51 RVVVMGGARVGKSSIISQFLYDRF--ISRYKET-----VEELHRGEYELPDGAQLTLDILDTSGAYQFP 112 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~~~~--~~~~~~t-----~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~ 112 (253)
..+|+|++|||||||+|+|..+.- +.+.... .-.....-+.++.| . .+.||||..++.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~g-G---~iiDTPGf~~~~ 230 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGG-G---WIIDTPGFRSLG 230 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCC-C---EEEeCCCCCccC
Confidence 678999999999999999996332 1111111 11233334445322 2 388999987654
No 392
>PRK13695 putative NTPase; Provisional
Probab=97.77 E-value=0.0012 Score=50.52 Aligned_cols=22 Identities=18% Similarity=0.398 Sum_probs=19.7
Q ss_pred ceEEEECCCCCCHHHHHHHHHh
Q psy549 50 RRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
++|+|+|.+|+|||||+..+.+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999998754
No 393
>PRK00098 GTPase RsgA; Reviewed
Probab=97.77 E-value=3.9e-05 Score=64.03 Aligned_cols=25 Identities=28% Similarity=0.444 Sum_probs=22.1
Q ss_pred cceEEEECCCCCCHHHHHHHHHhCC
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYDR 73 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~~ 73 (253)
...++|+|++|+|||||+|.|++..
T Consensus 164 gk~~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred CceEEEECCCCCCHHHHHHHHhCCc
Confidence 3478999999999999999999755
No 394
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.65 E-value=0.00059 Score=59.35 Aligned_cols=66 Identities=14% Similarity=0.029 Sum_probs=38.4
Q ss_pred EEEEEEEeCCCCCCChhhHHH----h--cccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCC
Q psy549 97 QLTLDILDTSGAYQFPAMREL----S--ISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEF 168 (253)
Q Consensus 97 ~~~~~l~D~~g~~~~~~~~~~----~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 168 (253)
.+.+.|+||+|.......... + ....+-+++|.|+.-+..-.... ..+... -.+-.+|+||.|...
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a---~~F~~~---~~~~g~IlTKlD~~a 253 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQA---KAFKDS---VDVGSVIITKLDGHA 253 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHH---HHHHhc---cCCcEEEEECccCCC
Confidence 467889999996654322211 1 22467899999987654322211 222221 135678899999643
No 395
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.59 E-value=0.00091 Score=52.81 Aligned_cols=49 Identities=20% Similarity=0.190 Sum_probs=31.5
Q ss_pred HHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCC
Q psy549 116 ELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELE 167 (253)
Q Consensus 116 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 167 (253)
+...+++|.+|+|.|++-. ++...++..+...... -.++.+|+||.|..
T Consensus 150 Rg~~~~vD~vivVvDpS~~-sl~taeri~~L~~elg--~k~i~~V~NKv~e~ 198 (255)
T COG3640 150 RGTIEGVDLVIVVVDPSYK-SLRTAERIKELAEELG--IKRIFVVLNKVDEE 198 (255)
T ss_pred cccccCCCEEEEEeCCcHH-HHHHHHHHHHHHHHhC--CceEEEEEeeccch
Confidence 3356779999999999754 4444333333222211 27999999999943
No 396
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.58 E-value=0.00063 Score=55.97 Aligned_cols=94 Identities=14% Similarity=0.035 Sum_probs=64.0
Q ss_pred hhHHHhcccCCEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHH-HHHHHHHhcCCCcEEE
Q psy549 113 AMRELSISTADAFVLVYAVDDAS-TWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRRE-IAETIALYDWQCGFVE 190 (253)
Q Consensus 113 ~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~ 190 (253)
.+....+.+.|-+++|+.+.+++ +..-+.+++-.... .++..++|+||+|+.+.+.... ....... ..+.+++.
T Consensus 71 ~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~---~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~-~~gy~v~~ 146 (301)
T COG1162 71 VLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA---GGIEPVIVLNKIDLLDDEEAAVKELLREYE-DIGYPVLF 146 (301)
T ss_pred ceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHH---cCCcEEEEEEccccCcchHHHHHHHHHHHH-hCCeeEEE
Confidence 33334455577777777777765 34445665554444 4577788899999988744442 2222332 57889999
Q ss_pred eccCCCCCHHHHHHHHHHHH
Q psy549 191 CSAKENYNIVQVFKELLAQA 210 (253)
Q Consensus 191 ~Sa~~~~~i~~l~~~l~~~~ 210 (253)
+|++++.++.++...+...+
T Consensus 147 ~s~~~~~~~~~l~~~l~~~~ 166 (301)
T COG1162 147 VSAKNGDGLEELAELLAGKI 166 (301)
T ss_pred ecCcCcccHHHHHHHhcCCe
Confidence 99999999999998887654
No 397
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.56 E-value=0.0034 Score=53.44 Aligned_cols=102 Identities=18% Similarity=0.076 Sum_probs=58.6
Q ss_pred EEEEEEeCCCCCCChhhHHHhc-------ccCCEEEEEEECCChhh--H--------------------HHHHHHHHHHH
Q psy549 98 LTLDILDTSGAYQFPAMRELSI-------STADAFVLVYAVDDAST--W--------------------DVVKDLREQIV 148 (253)
Q Consensus 98 ~~~~l~D~~g~~~~~~~~~~~~-------~~~d~~i~v~d~~~~~s--~--------------------~~~~~~~~~~~ 148 (253)
....++++.|......+...+. -..|++|.|.|+..-.. + ..+..++....
T Consensus 93 ~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Qi 172 (341)
T TIGR02475 93 PDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDHETPLEELFEDQL 172 (341)
T ss_pred CCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhccccccccccchHHHHHHHHH
Confidence 4566889999887666665542 13578999999864211 0 00111111111
Q ss_pred HhcCCCCCEEEEEecCCCCCccccHHHHHHHHHhcCC-CcEEEeccCCCCCHHHHHHH
Q psy549 149 NKRGLMVPIVVVGNKCELEFKDVRREIAETIALYDWQ-CGFVECSAKENYNIVQVFKE 205 (253)
Q Consensus 149 ~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~ 205 (253)
.. .=++|+||+|+.+..........+...... .+++++. ........+|+.
T Consensus 173 ~~-----AD~IvlnK~Dl~~~~~l~~~~~~l~~~~~~~a~i~~~~-~~~v~~~~ll~~ 224 (341)
T TIGR02475 173 AC-----ADLVILNKADLLDAAGLARVRAEIAAELPRAVKIVEAS-HGEVDARVLLGL 224 (341)
T ss_pred Hh-----CCEEEEeccccCCHHHHHHHHHHHHHhCCCCCEEEEcc-cCCCCHHHHhCC
Confidence 12 338899999988765555556666553343 3566654 334566666653
No 398
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.55 E-value=0.0017 Score=57.79 Aligned_cols=137 Identities=12% Similarity=0.063 Sum_probs=68.7
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCC--------C--CC-C-cccc-------ceeeeeeeEEc-CC----------Cc
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDR--------F--IS-R-YKET-------VEELHRGEYEL-PD----------GA 96 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~--------~--~~-~-~~~t-------~~~~~~~~~~~-~~----------~~ 96 (253)
...-.|+|+|+.|+||||++..|...- . .. + +... ........+.. .+ -.
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~ 427 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLR 427 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhc
Confidence 345789999999999999998887421 1 11 0 0000 00000001111 00 12
Q ss_pred EEEEEEEeCCCCCCChhhHHH---hcc--cCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccc
Q psy549 97 QLTLDILDTSGAYQFPAMREL---SIS--TADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDV 171 (253)
Q Consensus 97 ~~~~~l~D~~g~~~~~~~~~~---~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 171 (253)
.+.+.|+||+|.......... .+. .....++|++.+.. ...+...+..+.. ..+..+|+||.|....
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss--~~Dl~eii~~f~~----~~~~gvILTKlDEt~~-- 499 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAH--FSDLDEVVRRFAH----AKPQGVVLTKLDETGR-- 499 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCC--hhHHHHHHHHHHh----hCCeEEEEecCcCccc--
Confidence 357889999996543322111 111 12345666666542 3333333333322 2467899999997442
Q ss_pred cHHHHHHHHHhcCCCcEEEecc
Q psy549 172 RREIAETIALYDWQCGFVECSA 193 (253)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~Sa 193 (253)
.-.....+.. .+.|+.+++.
T Consensus 500 lG~aLsv~~~--~~LPI~yvt~ 519 (559)
T PRK12727 500 FGSALSVVVD--HQMPITWVTD 519 (559)
T ss_pred hhHHHHHHHH--hCCCEEEEeC
Confidence 2333444443 4556655543
No 399
>KOG0465|consensus
Probab=97.54 E-value=0.0002 Score=63.53 Aligned_cols=118 Identities=17% Similarity=0.179 Sum_probs=80.2
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCC-----C--CCCccccc-----------eeeeeeeEEcCCCcEEEEEEEeCCC
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDR-----F--ISRYKETV-----------EELHRGEYELPDGAQLTLDILDTSG 107 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~-----~--~~~~~~t~-----------~~~~~~~~~~~~~~~~~~~l~D~~g 107 (253)
....-+|.|+-+-.+||||+-++.+... + +..- .++ .........+ ....+.+.++||||
T Consensus 36 ~~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~-~a~md~m~~er~rgITiqSAAt~~-~w~~~~iNiIDTPG 113 (721)
T KOG0465|consen 36 LNKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGG-GATMDSMELERQRGITIQSAATYF-TWRDYRINIIDTPG 113 (721)
T ss_pred hhhhcccceEEEEecCCceeeheeeeecceeeeccccccC-ceeeehHHHHHhcCceeeeceeee-eeccceeEEecCCC
Confidence 3466789999999999999999987311 0 0000 000 0112221222 23357889999999
Q ss_pred CCCChhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc
Q psy549 108 AYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK 169 (253)
Q Consensus 108 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 169 (253)
+-.|.-..+..++--|++++|++...+.--+...-|.+. .+ .++|-+.++||.|--..
T Consensus 114 HvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~-~r---y~vP~i~FiNKmDRmGa 171 (721)
T KOG0465|consen 114 HVDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQM-KR---YNVPRICFINKMDRMGA 171 (721)
T ss_pred ceeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHH-Hh---cCCCeEEEEehhhhcCC
Confidence 999988888899999999999998876543444445443 33 45899999999996554
No 400
>KOG0085|consensus
Probab=97.54 E-value=0.00018 Score=56.48 Aligned_cols=118 Identities=13% Similarity=0.057 Sum_probs=67.6
Q ss_pred EEEEEEEeCCCCCCChhhHHHhcccCCEEEEEEECCChh----------hHHHHHHHHHHHHH-hcCCCCCEEEEEecCC
Q psy549 97 QLTLDILDTSGAYQFPAMRELSISTADAFVLVYAVDDAS----------TWDVVKDLREQIVN-KRGLMVPIVVVGNKCE 165 (253)
Q Consensus 97 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~-~~~~~~piilv~nK~D 165 (253)
.+.|.++|++|+..-+..|-..++++-.++++..++.-+ -.+.-..++.-+.. .-=.+.++++++||-|
T Consensus 198 ~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKkD 277 (359)
T KOG0085|consen 198 KIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKD 277 (359)
T ss_pred hheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEechhh
Confidence 455678888888877777777777766665555443211 01110111111111 0013579999999999
Q ss_pred CCCcc-----------------ccHHHHHHHH-----HhcCC----CcEEEeccCCCCCHHHHHHHHHHHHHHhc
Q psy549 166 LEFKD-----------------VRREIAETIA-----LYDWQ----CGFVECSAKENYNIVQVFKELLAQAKVQY 214 (253)
Q Consensus 166 l~~~~-----------------~~~~~~~~~~-----~~~~~----~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 214 (253)
+.... ...+.++.+- ..+.. +.-..++|.+-.||.-+|..+.+.++..+
T Consensus 278 lLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~ 352 (359)
T KOG0085|consen 278 LLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN 352 (359)
T ss_pred hhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHhh
Confidence 86541 1222233222 21211 22356889999999999999998887653
No 401
>KOG3859|consensus
Probab=97.51 E-value=0.0002 Score=57.74 Aligned_cols=60 Identities=20% Similarity=0.313 Sum_probs=41.5
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEc---CCCcEEEEEEEeCCC
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYEL---PDGAQLTLDILDTSG 107 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~---~~~~~~~~~l~D~~g 107 (253)
-.++|+-||..|.|||||+..|++-.+.....+... .......++ ..+..++++++||.|
T Consensus 41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG 104 (406)
T KOG3859|consen 41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG 104 (406)
T ss_pred ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence 468999999999999999999999887543332221 222222222 034567899999998
No 402
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.51 E-value=0.0016 Score=55.84 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=21.0
Q ss_pred CcceEEEECCCCCCHHHHHHHHHh
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
..-.|+|+|++|+||||++..|..
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~ 159 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAA 159 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345888999999999999999875
No 403
>KOG0459|consensus
Probab=97.51 E-value=0.00018 Score=60.76 Aligned_cols=157 Identities=18% Similarity=0.164 Sum_probs=92.9
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCC----------------------C--CC--Cccccce----eeeeeeEEcCCC
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDR----------------------F--IS--RYKETVE----ELHRGEYELPDG 95 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~----------------------~--~~--~~~~t~~----~~~~~~~~~~~~ 95 (253)
.+..++++|+|...+||||+-..++... + .. +.....+ +...+...+ ..
T Consensus 76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~F-Et 154 (501)
T KOG0459|consen 76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYF-ET 154 (501)
T ss_pred CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEE-Ee
Confidence 4678999999999999999887776211 0 00 0000000 111122222 33
Q ss_pred cEEEEEEEeCCCCCCChhhHHHhcccCCEEEEEEECCChh---hHHH--HHHHHHHHHHhcCCCCCEEEEEecCCCCCcc
Q psy549 96 AQLTLDILDTSGAYQFPAMRELSISTADAFVLVYAVDDAS---TWDV--VKDLREQIVNKRGLMVPIVVVGNKCELEFKD 170 (253)
Q Consensus 96 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~--~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 170 (253)
..-++++.|.||+..|....-.-..+||..++|.++--.+ -|+. ..+-...+... ..-...++++||.|-+..+
T Consensus 155 e~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt-~gv~~lVv~vNKMddPtvn 233 (501)
T KOG0459|consen 155 ENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT-AGVKHLIVLINKMDDPTVN 233 (501)
T ss_pred cceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHh-hccceEEEEEEeccCCccC
Confidence 3457899999999988776666677889999998875432 1222 11122222222 1335778999999987763
Q ss_pred ccHHHHHH--------HHHh----cCCCcEEEeccCCCCCHHHHHH
Q psy549 171 VRREIAET--------IALY----DWQCGFVECSAKENYNIVQVFK 204 (253)
Q Consensus 171 ~~~~~~~~--------~~~~----~~~~~~~~~Sa~~~~~i~~l~~ 204 (253)
-..+..+. +... .....++++|..+|.++.+..+
T Consensus 234 Ws~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 234 WSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred cchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 22222222 1111 1235689999999999987654
No 404
>KOG1534|consensus
Probab=97.49 E-value=0.00087 Score=52.00 Aligned_cols=119 Identities=13% Similarity=0.121 Sum_probs=63.9
Q ss_pred EEEEEeCCCCCCCh---hhHHHhccc------CCEEEEEEECCC-hhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCC
Q psy549 99 TLDILDTSGAYQFP---AMRELSIST------ADAFVLVYAVDD-ASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEF 168 (253)
Q Consensus 99 ~~~l~D~~g~~~~~---~~~~~~~~~------~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 168 (253)
.+-++|+||+.+.- ...+..++. -=+++++.+..= -++...+..-+..+.......+|.+-|++|.|+..
T Consensus 99 dylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMDLlk 178 (273)
T KOG1534|consen 99 DYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISLEVPHINVLSKMDLLK 178 (273)
T ss_pred CEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHhcCcchhhhhHHHHhh
Confidence 45699999987631 111222221 123444444321 11222233344445555556789999999999865
Q ss_pred cccc-------------------------------HHHHHHHHHhcCCCcEEEeccCCCCCHHHHHHHHHHHHHHhcccC
Q psy549 169 KDVR-------------------------------REIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQAKVQYNLS 217 (253)
Q Consensus 169 ~~~~-------------------------------~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~~~ 217 (253)
.... ..++..+.. ..-+.+++....+.+.|..++..|-..+.--...+
T Consensus 179 ~~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d-~~Mv~FlPl~~~~eeSi~~iL~~ID~aiQy~Ed~E 257 (273)
T KOG1534|consen 179 DKNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDD-YSMVNFLPLDSSDEESINIILSYIDDAIQYGEDLE 257 (273)
T ss_pred hhhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhcc-ccceeeeecCCCCHHHHHHHHHHHHHHHHhccccC
Confidence 4100 011111111 33456777877777888888888777775543333
Q ss_pred h
Q psy549 218 P 218 (253)
Q Consensus 218 ~ 218 (253)
+
T Consensus 258 ~ 258 (273)
T KOG1534|consen 258 P 258 (273)
T ss_pred c
Confidence 3
No 405
>KOG0099|consensus
Probab=97.47 E-value=0.00053 Score=54.85 Aligned_cols=71 Identities=17% Similarity=0.206 Sum_probs=48.2
Q ss_pred EEEEEEEeCCCCCCChhhHHHhcccCCEEEEEEECCChh-------h---HHHHHHHHHHHHHhc-CCCCCEEEEEecCC
Q psy549 97 QLTLDILDTSGAYQFPAMRELSISTADAFVLVYAVDDAS-------T---WDVVKDLREQIVNKR-GLMVPIVVVGNKCE 165 (253)
Q Consensus 97 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-------s---~~~~~~~~~~~~~~~-~~~~piilv~nK~D 165 (253)
.++|+.+|++|+..-+..|-..+.++.++|+|...+.-. + +.....+...+..++ -..+.+++++||.|
T Consensus 201 kv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKqD 280 (379)
T KOG0099|consen 201 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQD 280 (379)
T ss_pred ccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHHH
Confidence 367899999999999999999999999999999876411 0 111111122222211 12368899999999
Q ss_pred CC
Q psy549 166 LE 167 (253)
Q Consensus 166 l~ 167 (253)
+.
T Consensus 281 ll 282 (379)
T KOG0099|consen 281 LL 282 (379)
T ss_pred HH
Confidence 74
No 406
>KOG2484|consensus
Probab=97.42 E-value=0.00018 Score=60.65 Aligned_cols=59 Identities=27% Similarity=0.298 Sum_probs=41.7
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCC
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGA 108 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~ 108 (253)
.+..++++|+|-|++||||+||+|.......--...........+.. |. .+.|.|.||.
T Consensus 249 lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~L-dk---~i~llDsPgi 307 (435)
T KOG2484|consen 249 LKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKL-DK---KIRLLDSPGI 307 (435)
T ss_pred cCcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheec-cC---CceeccCCce
Confidence 47789999999999999999999998775322212222344445555 32 4679999994
No 407
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.39 E-value=0.0018 Score=49.39 Aligned_cols=66 Identities=17% Similarity=0.123 Sum_probs=37.7
Q ss_pred EEEEEEeCCCCCCChhhHH----Hh--cccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc
Q psy549 98 LTLDILDTSGAYQFPAMRE----LS--ISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK 169 (253)
Q Consensus 98 ~~~~l~D~~g~~~~~~~~~----~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 169 (253)
+.+.++|++|...+..... .+ ....+.+++|++...... .+ .+...+.... + ...+|.||.|....
T Consensus 83 ~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~--~~-~~~~~~~~~~--~-~~~viltk~D~~~~ 154 (173)
T cd03115 83 FDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD--AV-NQAKAFNEAL--G-ITGVILTKLDGDAR 154 (173)
T ss_pred CCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH--HH-HHHHHHHhhC--C-CCEEEEECCcCCCC
Confidence 4567899999753321111 11 124899999999865432 22 3333333222 2 35677899997653
No 408
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.37 E-value=0.0017 Score=39.50 Aligned_cols=47 Identities=21% Similarity=0.199 Sum_probs=30.3
Q ss_pred hcccCCEEEEEEECCC--hhhHHHHHHHHHHHHHhcCCCCCEEEEEecCC
Q psy549 118 SISTADAFVLVYAVDD--ASTWDVVKDLREQIVNKRGLMVPIVVVGNKCE 165 (253)
Q Consensus 118 ~~~~~d~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D 165 (253)
.-...++++|++|++. +-+.+.....+..+.... .+.|+++|+||+|
T Consensus 10 L~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F-~~~P~i~V~nK~D 58 (58)
T PF06858_consen 10 LAHLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF-PNKPVIVVLNKID 58 (58)
T ss_dssp GGGT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT-TTS-EEEEE--TT
T ss_pred HHhhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc-CCCCEEEEEeccC
Confidence 3456899999999986 346666666777777654 4789999999998
No 409
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.36 E-value=0.0028 Score=54.25 Aligned_cols=113 Identities=19% Similarity=0.253 Sum_probs=60.4
Q ss_pred cceEEEECCCCCCHHHHHHHHHhCCCCCCccccc-------------------eeeeeeeEEcC-----------CCcEE
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYDRFISRYKETV-------------------EELHRGEYELP-----------DGAQL 98 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~-------------------~~~~~~~~~~~-----------~~~~~ 98 (253)
.-.|++|||.||||||-+-.|............. .+...-.+... .-..+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 6789999999999999887766433200000000 00111111110 12235
Q ss_pred EEEEEeCCCCCCChhhHHH----hccc--CCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCE-EEEEecCCCCC
Q psy549 99 TLDILDTSGAYQFPAMREL----SIST--ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPI-VVVGNKCELEF 168 (253)
Q Consensus 99 ~~~l~D~~g~~~~~~~~~~----~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl~~ 168 (253)
++.|+||.|...++..... ++.. ..-+.+|++++.. ..++...+..+.. +|+ -+++||.|-..
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~-----~~i~~~I~TKlDET~ 352 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSL-----FPIDGLIFTKLDETT 352 (407)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhcc-----CCcceeEEEcccccC
Confidence 7789999998776544432 2222 2344556666653 2344444443322 233 66789999654
No 410
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.33 E-value=0.0015 Score=56.87 Aligned_cols=24 Identities=17% Similarity=0.292 Sum_probs=21.0
Q ss_pred CcceEEEECCCCCCHHHHHHHHHh
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
..-.|+|+|++|+||||++..|.+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998765
No 411
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.32 E-value=0.0023 Score=61.97 Aligned_cols=113 Identities=17% Similarity=0.142 Sum_probs=60.6
Q ss_pred eEEEECCCCCCHHHHHHHHHhCCCC--CCccccc-eeeeeee--EEcCCCcEEEEEEEeCCCCCC--------ChhhHHH
Q psy549 51 RVVVMGGARVGKSSIISQFLYDRFI--SRYKETV-EELHRGE--YELPDGAQLTLDILDTSGAYQ--------FPAMREL 117 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~~~~~--~~~~~t~-~~~~~~~--~~~~~~~~~~~~l~D~~g~~~--------~~~~~~~ 117 (253)
=-+|||++|+||||++.. .+..|+ ....... ....... -.+ ... -.++||+|... -...|..
T Consensus 127 Wy~viG~pgsGKTtal~~-sgl~Fpl~~~~~~~~~~~~gT~~cdwwf-~de---aVlIDtaGry~~q~s~~~~~~~~W~~ 201 (1188)
T COG3523 127 WYMVIGPPGSGKTTALLN-SGLQFPLAEQMGALGLAGPGTRNCDWWF-TDE---AVLIDTAGRYITQDSADEVDRAEWLG 201 (1188)
T ss_pred ceEEecCCCCCcchHHhc-ccccCcchhhhccccccCCCCcccCccc-ccc---eEEEcCCcceecccCcchhhHHHHHH
Confidence 357889999999999854 333332 1000000 0110111 112 222 23788888332 2233333
Q ss_pred h---------cccCCEEEEEEECCChhhHH-----H----HHHHHHHHHHhcCCCCCEEEEEecCCCCC
Q psy549 118 S---------ISTADAFVLVYAVDDASTWD-----V----VKDLREQIVNKRGLMVPIVVVGNKCELEF 168 (253)
Q Consensus 118 ~---------~~~~d~~i~v~d~~~~~s~~-----~----~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 168 (253)
+ .+..+++|+..|+.+--.-. . +..=+.++...-.-..||.+++||.|+..
T Consensus 202 fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 202 FLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence 2 34479999999987532111 1 11123334444446799999999999875
No 412
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.31 E-value=0.0026 Score=54.67 Aligned_cols=22 Identities=18% Similarity=0.502 Sum_probs=20.1
Q ss_pred cceEEEECCCCCCHHHHHHHHH
Q psy549 49 KRRVVVMGGARVGKSSIISQFL 70 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~ 70 (253)
...|+|+|+.|+||||++..|.
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA 262 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMA 262 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHH
Confidence 3689999999999999999986
No 413
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.29 E-value=0.0025 Score=52.59 Aligned_cols=63 Identities=16% Similarity=0.113 Sum_probs=42.9
Q ss_pred chhhhhhcccccccccccccccccccCCCCCCCCCCCCCCCCCCCcceEEEECCCCCCHHHHHHHHHhCCC
Q psy549 4 KKQDLDKGLQTDYRKMPGACERLRLHSLGTESTSSSGTGVGLQKDKRRVVVMGGARVGKSSIISQFLYDRF 74 (253)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~iiG~~~~GKSsLi~~l~~~~~ 74 (253)
.+++...+....|..++.+.+-+....--. ..+......+++|+|++|.|||+++++|.....
T Consensus 24 ~~eRI~~i~~~rWIgY~~A~~~L~~L~~Ll--------~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp 86 (302)
T PF05621_consen 24 DEERIAYIRADRWIGYPRAKEALDRLEELL--------EYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHP 86 (302)
T ss_pred HHHHHHHHhcCCeecCHHHHHHHHHHHHHH--------hCCcccCCCceEEecCCCCcHHHHHHHHHHHCC
Confidence 456667777888888887764442211000 112234557899999999999999999998654
No 414
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.26 E-value=0.00025 Score=50.70 Aligned_cols=22 Identities=18% Similarity=0.370 Sum_probs=20.0
Q ss_pred eEEEECCCCCCHHHHHHHHHhC
Q psy549 51 RVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
.|+|.|++||||||+++.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999875
No 415
>KOG0447|consensus
Probab=97.26 E-value=0.0092 Score=52.77 Aligned_cols=68 Identities=13% Similarity=0.184 Sum_probs=41.6
Q ss_pred EEEEEeCCCCCC-------------ChhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHH-HhcCCCCCEEEEEecC
Q psy549 99 TLDILDTSGAYQ-------------FPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIV-NKRGLMVPIVVVGNKC 164 (253)
Q Consensus 99 ~~~l~D~~g~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~-~~~~~~~piilv~nK~ 164 (253)
++.++|.||... ...+...++.+..++|+|+--..-+. -......+- .....+...|+|++|.
T Consensus 413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDA---ERSnVTDLVsq~DP~GrRTIfVLTKV 489 (980)
T KOG0447|consen 413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDA---ERSIVTDLVSQMDPHGRRTIFVLTKV 489 (980)
T ss_pred eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcch---hhhhHHHHHHhcCCCCCeeEEEEeec
Confidence 356889999321 23445567889999999874332211 111222222 2333567889999999
Q ss_pred CCCCc
Q psy549 165 ELEFK 169 (253)
Q Consensus 165 Dl~~~ 169 (253)
|+...
T Consensus 490 DlAEk 494 (980)
T KOG0447|consen 490 DLAEK 494 (980)
T ss_pred chhhh
Confidence 99876
No 416
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.26 E-value=0.004 Score=42.05 Aligned_cols=69 Identities=19% Similarity=0.265 Sum_probs=44.9
Q ss_pred EEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhh-HHHhcccCCEEEEEEE
Q psy549 52 VVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAM-RELSISTADAFVLVYA 130 (253)
Q Consensus 52 I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~-~~~~~~~~d~~i~v~d 130 (253)
|++.|..|+||||+...+...--.. ......+ + .+.++|+++....... .......+|.++++.+
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~---------g~~v~~~-~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~ 67 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKR---------GKRVLLI-D----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT 67 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC---------CCeEEEE-C----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence 6788999999999998877532110 1122223 2 5679999876543321 1345667899999998
Q ss_pred CCCh
Q psy549 131 VDDA 134 (253)
Q Consensus 131 ~~~~ 134 (253)
....
T Consensus 68 ~~~~ 71 (99)
T cd01983 68 PEAL 71 (99)
T ss_pred Cchh
Confidence 7654
No 417
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.25 E-value=0.0023 Score=46.60 Aligned_cols=26 Identities=15% Similarity=0.414 Sum_probs=22.3
Q ss_pred cceEEEECCCCCCHHHHHHHHHhCCC
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYDRF 74 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~~~ 74 (253)
...++|.|++|+|||+|++.+...-.
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 35799999999999999999987653
No 418
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.19 E-value=0.0017 Score=56.73 Aligned_cols=65 Identities=18% Similarity=0.106 Sum_probs=37.9
Q ss_pred EEEEEEeCCCCCCChhhHHH------hcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCC
Q psy549 98 LTLDILDTSGAYQFPAMREL------SISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEF 168 (253)
Q Consensus 98 ~~~~l~D~~g~~~~~~~~~~------~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 168 (253)
+.+.|+||+|........-. ..-..+.+++|.|+.... ....+...+.... ...-+|.||.|...
T Consensus 183 ~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~~a~~f~~~v---~i~giIlTKlD~~~ 253 (428)
T TIGR00959 183 FDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAVNTAKTFNERL---GLTGVVLTKLDGDA 253 (428)
T ss_pred CCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHHHHHHHHHhhC---CCCEEEEeCccCcc
Confidence 56789999996544222111 123478889999987543 3333333333221 13477799999543
No 419
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.18 E-value=0.0046 Score=42.83 Aligned_cols=82 Identities=18% Similarity=0.169 Sum_probs=48.7
Q ss_pred EEEEC-CCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEEEE
Q psy549 52 VVVMG-GARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLVYA 130 (253)
Q Consensus 52 I~iiG-~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 130 (253)
|+|.| ..|+||||+...+...--.... ....+.. |. .+.+.++|+|+.... .....+..+|.++++.+
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~~~-------~vl~~d~-d~-~~d~viiD~p~~~~~--~~~~~l~~ad~viv~~~ 70 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARRGK-------RVLLIDL-DP-QYDYIIIDTPPSLGL--LTRNALAAADLVLIPVQ 70 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhCCC-------cEEEEeC-CC-CCCEEEEeCcCCCCH--HHHHHHHHCCEEEEecc
Confidence 56777 6799999988766532110100 0011111 11 156789999886532 23367778999999997
Q ss_pred CCChhhHHHHHHHHH
Q psy549 131 VDDASTWDVVKDLRE 145 (253)
Q Consensus 131 ~~~~~s~~~~~~~~~ 145 (253)
.+ ..++..+..+++
T Consensus 71 ~~-~~s~~~~~~~~~ 84 (104)
T cd02042 71 PS-PLDLDGLEKLLE 84 (104)
T ss_pred CC-HHHHHHHHHHHH
Confidence 75 445555555554
No 420
>PRK08118 topology modulation protein; Reviewed
Probab=97.17 E-value=0.00036 Score=53.12 Aligned_cols=23 Identities=22% Similarity=0.505 Sum_probs=20.7
Q ss_pred ceEEEECCCCCCHHHHHHHHHhC
Q psy549 50 RRVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
.+|+|+|++|||||||...|...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999998864
No 421
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.17 E-value=0.0053 Score=45.16 Aligned_cols=103 Identities=17% Similarity=0.150 Sum_probs=61.0
Q ss_pred EEECCCCCCHHHHHHHHHhCCCCCCccccc-e--eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEEE
Q psy549 53 VVMGGARVGKSSIISQFLYDRFISRYKETV-E--ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLVY 129 (253)
Q Consensus 53 ~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~-~--~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 129 (253)
..-|.+|+|||++.-.+...--.... .+. . +.....+ .+.+.++|+|+.. .......+..+|.++++.
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~~~~-~~~~vd~D~~~~~~------~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~ 74 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAKLGK-RVLLLDADLGLANL------DYDYIIIDTGAGI--SDNVLDFFLAADEVIVVT 74 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHHCCC-cEEEEECCCCCCCC------CCCEEEEECCCCC--CHHHHHHHHhCCeEEEEc
Confidence 35578999999998766532110000 000 0 1111111 1567899998753 334456788999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCC
Q psy549 130 AVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCEL 166 (253)
Q Consensus 130 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 166 (253)
+.+. .++......+..+.... ...++.+|+|+++.
T Consensus 75 ~~~~-~s~~~~~~~l~~l~~~~-~~~~~~lVvN~~~~ 109 (139)
T cd02038 75 TPEP-TSITDAYALIKKLAKQL-RVLNFRVVVNRAES 109 (139)
T ss_pred CCCh-hHHHHHHHHHHHHHHhc-CCCCEEEEEeCCCC
Confidence 8864 34444444444443322 34678899999974
No 422
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.13 E-value=0.00041 Score=53.31 Aligned_cols=23 Identities=22% Similarity=0.501 Sum_probs=21.0
Q ss_pred ceEEEECCCCCCHHHHHHHHHhC
Q psy549 50 RRVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
.+|+|+|+|||||||+..+|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999876
No 423
>PRK07261 topology modulation protein; Provisional
Probab=97.11 E-value=0.00044 Score=52.87 Aligned_cols=22 Identities=18% Similarity=0.434 Sum_probs=19.9
Q ss_pred eEEEECCCCCCHHHHHHHHHhC
Q psy549 51 RVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
+|+|+|.+|+|||||++.+...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999998653
No 424
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.11 E-value=0.00057 Score=42.52 Aligned_cols=21 Identities=19% Similarity=0.349 Sum_probs=19.0
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q psy549 51 RVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~ 71 (253)
..+|.|+.|+|||||+.++..
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999874
No 425
>PRK10867 signal recognition particle protein; Provisional
Probab=97.08 E-value=0.0026 Score=55.64 Aligned_cols=65 Identities=14% Similarity=0.067 Sum_probs=36.1
Q ss_pred EEEEEEeCCCCCCChhh-HHH---h--cccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCC
Q psy549 98 LTLDILDTSGAYQFPAM-REL---S--ISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEF 168 (253)
Q Consensus 98 ~~~~l~D~~g~~~~~~~-~~~---~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 168 (253)
+.+.|+||+|....... ... + .-..+.+++|.|+...+ +.......+.... ...-+|+||.|...
T Consensus 184 ~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq---~av~~a~~F~~~~---~i~giIlTKlD~~~ 254 (433)
T PRK10867 184 YDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQ---DAVNTAKAFNEAL---GLTGVILTKLDGDA 254 (433)
T ss_pred CCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHH---HHHHHHHHHHhhC---CCCEEEEeCccCcc
Confidence 56889999996543221 111 1 12467789999987543 2222333333211 13367789999643
No 426
>KOG4273|consensus
Probab=97.08 E-value=0.0029 Score=50.39 Aligned_cols=117 Identities=15% Similarity=0.183 Sum_probs=67.2
Q ss_pred CcceEEEECCCCC--CHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEE--EEEEEeCCCCCCChhhHHHhcccC
Q psy549 48 DKRRVVVMGGARV--GKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQL--TLDILDTSGAYQFPAMRELSISTA 122 (253)
Q Consensus 48 ~~~~I~iiG~~~~--GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~--~~~l~D~~g~~~~~~~~~~~~~~~ 122 (253)
....++++|-+|+ ||-+|+.+|....+.....+... .++..++ +.+.+ .+.+.=.+--+++.--.....+..
T Consensus 3 ~rp~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwti---d~kyysadi~lcishicde~~lpn~~~a~pl 79 (418)
T KOG4273|consen 3 GRPCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTI---DNKYYSADINLCISHICDEKFLPNAEIAEPL 79 (418)
T ss_pred CCceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEe---cceeeecceeEEeecccchhccCCcccccce
Confidence 3467889999999 99999999998877433322222 2333332 22221 111111111122211112233456
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc
Q psy549 123 DAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK 169 (253)
Q Consensus 123 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 169 (253)
.++++|||.+....+..+..|+.-...+. .+ -++.++||.|...+
T Consensus 80 ~a~vmvfdlse~s~l~alqdwl~htdins-fd-illcignkvdrvph 124 (418)
T KOG4273|consen 80 QAFVMVFDLSEKSGLDALQDWLPHTDINS-FD-ILLCIGNKVDRVPH 124 (418)
T ss_pred eeEEEEEeccchhhhHHHHhhcccccccc-ch-hheecccccccccc
Confidence 79999999999988888888875332211 11 23667899996543
No 427
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.03 E-value=0.00052 Score=50.51 Aligned_cols=21 Identities=19% Similarity=0.412 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHHhC
Q psy549 52 VVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 52 I~iiG~~~~GKSsLi~~l~~~ 72 (253)
|+++|+||||||||++.+...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998843
No 428
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.03 E-value=0.0023 Score=46.54 Aligned_cols=25 Identities=20% Similarity=0.361 Sum_probs=21.6
Q ss_pred cceEEEECCCCCCHHHHHHHHHhCC
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYDR 73 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~~ 73 (253)
.-.|++.|+.|+|||||++.+...-
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3469999999999999999998753
No 429
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.02 E-value=0.00054 Score=54.66 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=19.7
Q ss_pred eEEEECCCCCCHHHHHHHHHhC
Q psy549 51 RVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
-|+|+|++|||||||++.+.+-
T Consensus 31 fvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999988863
No 430
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.02 E-value=0.0017 Score=56.95 Aligned_cols=23 Identities=13% Similarity=0.351 Sum_probs=20.3
Q ss_pred CcceEEEECCCCCCHHHHHHHHH
Q psy549 48 DKRRVVVMGGARVGKSSIISQFL 70 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~ 70 (253)
....|+|+|++|+||||++..|.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA 116 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLA 116 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHH
Confidence 45789999999999999998876
No 431
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.02 E-value=0.00074 Score=43.26 Aligned_cols=21 Identities=24% Similarity=0.547 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHHhC
Q psy549 52 VVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 52 I~iiG~~~~GKSsLi~~l~~~ 72 (253)
|++.|++|+||||+.+.+...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998865
No 432
>KOG1533|consensus
Probab=97.01 E-value=0.0007 Score=53.37 Aligned_cols=69 Identities=16% Similarity=0.189 Sum_probs=38.9
Q ss_pred EEEEEEeCCCCCCC----hhhHHH--hcccCCEEEEEEECC------ChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCC
Q psy549 98 LTLDILDTSGAYQF----PAMREL--SISTADAFVLVYAVD------DASTWDVVKDLREQIVNKRGLMVPIVVVGNKCE 165 (253)
Q Consensus 98 ~~~~l~D~~g~~~~----~~~~~~--~~~~~d~~i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D 165 (253)
-.+-++|+||+-++ ..++.. .++.-+.-+.+..+. ++..|-. .++..+.-..--..|-+=|+.|+|
T Consensus 97 ~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS--~lL~sl~tMl~melphVNvlSK~D 174 (290)
T KOG1533|consen 97 DHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFIS--SLLVSLATMLHMELPHVNVLSKAD 174 (290)
T ss_pred CcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHH--HHHHHHHHHHhhcccchhhhhHhH
Confidence 35679999998763 222222 344456555555544 3444433 222222222224579999999999
Q ss_pred CCC
Q psy549 166 LEF 168 (253)
Q Consensus 166 l~~ 168 (253)
+..
T Consensus 175 l~~ 177 (290)
T KOG1533|consen 175 LLK 177 (290)
T ss_pred HHH
Confidence 754
No 433
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.97 E-value=0.0027 Score=54.26 Aligned_cols=24 Identities=21% Similarity=0.519 Sum_probs=20.6
Q ss_pred CcceEEEECCCCCCHHHHHHHHHh
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
..-.|+|+|+.|+||||++..+..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~ 228 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGW 228 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999998873
No 434
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.96 E-value=0.007 Score=46.49 Aligned_cols=26 Identities=12% Similarity=0.220 Sum_probs=22.4
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCC
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDR 73 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~ 73 (253)
..=.++|+|++|+|||||++.+.+-.
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 44589999999999999999888754
No 435
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.94 E-value=0.00054 Score=51.85 Aligned_cols=22 Identities=32% Similarity=0.681 Sum_probs=18.0
Q ss_pred eEEEECCCCCCHHHHHHHHHhC
Q psy549 51 RVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
||+|+|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999866
No 436
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.92 E-value=0.0097 Score=53.38 Aligned_cols=22 Identities=14% Similarity=0.347 Sum_probs=18.7
Q ss_pred eEEEECCCCCCHHHHHHHHHhC
Q psy549 51 RVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
-.++.||+|+||||.++.|...
T Consensus 47 iLlLtGP~G~GKtttv~~La~e 68 (519)
T PF03215_consen 47 ILLLTGPSGCGKTTTVKVLAKE 68 (519)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4567899999999999988854
No 437
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.91 E-value=0.00075 Score=53.50 Aligned_cols=23 Identities=22% Similarity=0.255 Sum_probs=19.8
Q ss_pred ceEEEECCCCCCHHHHHHHHHhC
Q psy549 50 RRVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
=-|+|+|++|||||||+|-+-+-
T Consensus 32 e~vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 32 EFVAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 36899999999999999987653
No 438
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.91 E-value=0.00078 Score=49.22 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=21.6
Q ss_pred cceEEEECCCCCCHHHHHHHHHhCC
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYDR 73 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~~ 73 (253)
.=.++|+|++|+|||||++.+.+..
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEEccCCCccccceeeecccc
Confidence 3478999999999999999888764
No 439
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.89 E-value=0.0011 Score=51.81 Aligned_cols=40 Identities=20% Similarity=0.134 Sum_probs=27.6
Q ss_pred HHHHHHHHHhcCCCcEE--EeccCCCCCHHHHHHHHHHHHHHh
Q psy549 173 REIAETIALYDWQCGFV--ECSAKENYNIVQVFKELLAQAKVQ 213 (253)
Q Consensus 173 ~~~~~~~~~~~~~~~~~--~~Sa~~~~~i~~l~~~l~~~~~~~ 213 (253)
..+++.++- ...+-.| +|||.+++-+.|+++.|.+.+.+-
T Consensus 145 VAIARALaM-~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eG 186 (240)
T COG1126 145 VAIARALAM-DPKVMLFDEPTSALDPELVGEVLDVMKDLAEEG 186 (240)
T ss_pred HHHHHHHcC-CCCEEeecCCcccCCHHHHHHHHHHHHHHHHcC
Confidence 445555554 3333222 389999999999999998887654
No 440
>KOG2485|consensus
Probab=96.89 E-value=0.0025 Score=52.34 Aligned_cols=62 Identities=19% Similarity=0.306 Sum_probs=39.4
Q ss_pred CCCCcceEEEECCCCCCHHHHHHHHHhCCC-------CCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCC
Q psy549 45 LQKDKRRVVVMGGARVGKSSIISQFLYDRF-------ISRYKETVEELHRGEYELPDGAQLTLDILDTSGAY 109 (253)
Q Consensus 45 ~~~~~~~I~iiG~~~~GKSsLi~~l~~~~~-------~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 109 (253)
....++++.|+|-||+|||||+|++..... +...+..+.... ..+.+.+.. .+.+.||||.-
T Consensus 139 t~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~-~~iri~~rp--~vy~iDTPGil 207 (335)
T KOG2485|consen 139 TLNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVS-ERIRISHRP--PVYLIDTPGIL 207 (335)
T ss_pred ccCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeeh-hheEeccCC--ceEEecCCCcC
Confidence 356789999999999999999999875332 222333333222 223332332 36789999943
No 441
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=96.87 E-value=0.003 Score=48.31 Aligned_cols=57 Identities=19% Similarity=0.184 Sum_probs=35.2
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHH
Q psy549 123 DAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIAL 181 (253)
Q Consensus 123 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~ 181 (253)
|++++|.|+.++.+..+ ..+...+. ....+.|+++|+||+|+.+........+.+..
T Consensus 1 DvVl~VvDar~p~~~~~-~~i~~~~~-l~~~~kp~IlVlNK~DL~~~~~l~~~~~~~~~ 57 (172)
T cd04178 1 DVILEVLDARDPLGCRC-PQVEEAVL-QAGGNKKLVLVLNKIDLVPKENVEKWLKYLRR 57 (172)
T ss_pred CEEEEEEECCCCCCCCC-HHHHHHHH-hccCCCCEEEEEehhhcCCHHHHHHHHHHHHh
Confidence 78999999988643221 22222221 12245899999999999765444445555544
No 442
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.87 E-value=0.0025 Score=50.22 Aligned_cols=26 Identities=23% Similarity=0.365 Sum_probs=21.9
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhC
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
....-|+|+|++|||||||++.|...
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 34567889999999999999999754
No 443
>KOG2423|consensus
Probab=96.84 E-value=0.00087 Score=56.73 Aligned_cols=57 Identities=21% Similarity=0.236 Sum_probs=0.0
Q ss_pred CCCCcceEEEECCCCCCHHHHHHHHHhCCC--CCCccccceeeeeeeEEcCCCcEEEEEEEeCCC
Q psy549 45 LQKDKRRVVVMGGARVGKSSIISQFLYDRF--ISRYKETVEELHRGEYELPDGAQLTLDILDTSG 107 (253)
Q Consensus 45 ~~~~~~~I~iiG~~~~GKSsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g 107 (253)
..+..+-|+|||-||+||||+||.|-..+. +...+..+.-.++.++.- ++-++|+||
T Consensus 303 ~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYItLmk------rIfLIDcPG 361 (572)
T KOG2423|consen 303 SDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYITLMK------RIFLIDCPG 361 (572)
T ss_pred cCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHHHHh------ceeEecCCC
No 444
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.81 E-value=0.022 Score=49.46 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=20.1
Q ss_pred cceEEEECCCCCCHHHHHHHHHh
Q psy549 49 KRRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
...|+|+|++||||||++..|..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35688999999999999999874
No 445
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.78 E-value=0.017 Score=51.29 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=19.9
Q ss_pred ceEEEECCCCCCHHHHHHHHHh
Q psy549 50 RRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
--|+|+|+.||||||++..|..
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHH
Confidence 5799999999999999998884
No 446
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.78 E-value=0.0015 Score=51.48 Aligned_cols=26 Identities=23% Similarity=0.400 Sum_probs=23.0
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhC
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
.....|+|.|++|||||||++.|...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45689999999999999999998864
No 447
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.77 E-value=0.0013 Score=47.36 Aligned_cols=22 Identities=14% Similarity=0.277 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHhCC
Q psy549 52 VVVMGGARVGKSSIISQFLYDR 73 (253)
Q Consensus 52 I~iiG~~~~GKSsLi~~l~~~~ 73 (253)
|++.|++|+|||++++.+...-
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 6899999999999999988753
No 448
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.77 E-value=0.0022 Score=52.73 Aligned_cols=25 Identities=16% Similarity=0.500 Sum_probs=22.3
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhC
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
..-.|+|.|++|+||||+++.++..
T Consensus 126 ~~~~ili~G~tGSGKTT~l~all~~ 150 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLLNALLEE 150 (270)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCccccchHHHHHhhh
Confidence 3678999999999999999999863
No 449
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=96.76 E-value=0.015 Score=40.52 Aligned_cols=99 Identities=15% Similarity=0.080 Sum_probs=57.0
Q ss_pred ECCCCCCHHHHHHHHHhCCCCC-CccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEEEECCC
Q psy549 55 MGGARVGKSSIISQFLYDRFIS-RYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLVYAVDD 133 (253)
Q Consensus 55 iG~~~~GKSsLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~ 133 (253)
=+..|+||||+...|...--.. ...--..+.... . ...+.++|+|+... ......+..+|.++++.+.+.
T Consensus 6 ~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~---~----~~D~IIiDtpp~~~--~~~~~~l~~aD~vlvvv~~~~ 76 (106)
T cd03111 6 GAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQ---F----GDDYVVVDLGRSLD--EVSLAALDQADRVFLVTQQDL 76 (106)
T ss_pred CCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCC---C----CCCEEEEeCCCCcC--HHHHHHHHHcCeEEEEecCCh
Confidence 3678999999876665321100 000000000000 0 01567999988653 334456788999999987754
Q ss_pred hhhHHHHHHHHHHHHHhcCC-CCCEEEEEec
Q psy549 134 ASTWDVVKDLREQIVNKRGL-MVPIVVVGNK 163 (253)
Q Consensus 134 ~~s~~~~~~~~~~~~~~~~~-~~piilv~nK 163 (253)
.+......+...+.....+ ...+.+|+|+
T Consensus 77 -~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 77 -PSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred -HHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 4556667777666664433 4567777775
No 450
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.74 E-value=0.012 Score=46.16 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=20.0
Q ss_pred eEEEECCCCCCHHHHHHHHHhCC
Q psy549 51 RVVVMGGARVGKSSIISQFLYDR 73 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~~~ 73 (253)
-|+|+|++|+||||+++.++...
T Consensus 3 lilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999987644
No 451
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.74 E-value=0.0014 Score=48.27 Aligned_cols=22 Identities=27% Similarity=0.543 Sum_probs=20.0
Q ss_pred eEEEECCCCCCHHHHHHHHHhC
Q psy549 51 RVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
.|+|+|+.|+|||||++.|++.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999864
No 452
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.72 E-value=0.0014 Score=52.56 Aligned_cols=27 Identities=37% Similarity=0.658 Sum_probs=23.6
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhC
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
....++++|+|++|||||+|+-.++..
T Consensus 10 ~~~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 10 LKDPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred cCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 456789999999999999999998854
No 453
>PRK06217 hypothetical protein; Validated
Probab=96.72 E-value=0.0014 Score=50.66 Aligned_cols=23 Identities=13% Similarity=0.284 Sum_probs=20.7
Q ss_pred ceEEEECCCCCCHHHHHHHHHhC
Q psy549 50 RRVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
.+|+|+|.+|||||||..+|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998854
No 454
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.72 E-value=0.0016 Score=47.05 Aligned_cols=25 Identities=12% Similarity=0.268 Sum_probs=22.0
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCCC
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDRF 74 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~~ 74 (253)
-.++|+|++|+|||+++..+...-.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccC
Confidence 4789999999999999999987654
No 455
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.71 E-value=0.0017 Score=51.19 Aligned_cols=25 Identities=16% Similarity=0.294 Sum_probs=21.8
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhC
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
...-|+|+|++|||||||++.+.+.
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 4467999999999999999999863
No 456
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=96.70 E-value=0.0016 Score=49.68 Aligned_cols=27 Identities=19% Similarity=0.238 Sum_probs=22.3
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCCC
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDRF 74 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~~ 74 (253)
..=.++|+|++|+|||||+|-+.+=..
T Consensus 24 ~ge~vAi~GpSGaGKSTLLnLIAGF~~ 50 (231)
T COG3840 24 AGEIVAILGPSGAGKSTLLNLIAGFET 50 (231)
T ss_pred CCcEEEEECCCCccHHHHHHHHHhccC
Confidence 345789999999999999998886443
No 457
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.70 E-value=0.02 Score=50.16 Aligned_cols=86 Identities=14% Similarity=0.021 Sum_probs=44.7
Q ss_pred EEEEEEeCCCCCCChh----hHHHhcc---cCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCcc
Q psy549 98 LTLDILDTSGAYQFPA----MRELSIS---TADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKD 170 (253)
Q Consensus 98 ~~~~l~D~~g~~~~~~----~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 170 (253)
+.+.|+||+|...... ....++. ...-+++|.+.+... ..+...+..+.. . .+--+|+||.|....
T Consensus 300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~--~~l~~~~~~f~~---~-~~~~vI~TKlDet~~- 372 (424)
T PRK05703 300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY--EDLKDIYKHFSR---L-PLDGLIFTKLDETSS- 372 (424)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH--HHHHHHHHHhCC---C-CCCEEEEeccccccc-
Confidence 5778999999765431 1222333 234567777776432 233333332221 1 123688999997432
Q ss_pred ccHHHHHHHHHhcCCCcEEEecc
Q psy549 171 VRREIAETIALYDWQCGFVECSA 193 (253)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~Sa 193 (253)
.-.+...+.. .+.|+..++.
T Consensus 373 -~G~i~~~~~~--~~lPv~yit~ 392 (424)
T PRK05703 373 -LGSILSLLIE--SGLPISYLTN 392 (424)
T ss_pred -ccHHHHHHHH--HCCCEEEEeC
Confidence 2234444443 4556555543
No 458
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.70 E-value=0.0014 Score=47.00 Aligned_cols=21 Identities=19% Similarity=0.279 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHHHhC
Q psy549 52 VVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 52 I~iiG~~~~GKSsLi~~l~~~ 72 (253)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998865
No 459
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.67 E-value=0.0016 Score=45.40 Aligned_cols=22 Identities=23% Similarity=0.542 Sum_probs=19.5
Q ss_pred cceEEEECCCCCCHHHHHHHHH
Q psy549 49 KRRVVVMGGARVGKSSIISQFL 70 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~ 70 (253)
.-.++|+|++|+|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 3568999999999999999876
No 460
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.67 E-value=0.0016 Score=51.00 Aligned_cols=21 Identities=19% Similarity=0.533 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHHhC
Q psy549 52 VVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 52 I~iiG~~~~GKSsLi~~l~~~ 72 (253)
|+|.|++|||||||++.|.+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998764
No 461
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.67 E-value=0.0016 Score=49.99 Aligned_cols=22 Identities=18% Similarity=0.292 Sum_probs=19.8
Q ss_pred eEEEECCCCCCHHHHHHHHHhC
Q psy549 51 RVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
.|+|+|++|||||||++.+...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5799999999999999998764
No 462
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.67 E-value=0.0017 Score=50.35 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=20.0
Q ss_pred eEEEECCCCCCHHHHHHHHHhC
Q psy549 51 RVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
.|+|+|++|+|||||++.|...
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999764
No 463
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.66 E-value=0.0017 Score=47.65 Aligned_cols=21 Identities=33% Similarity=0.669 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHHHhC
Q psy549 52 VVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 52 I~iiG~~~~GKSsLi~~l~~~ 72 (253)
|+|+|++|+|||||++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999864
No 464
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.64 E-value=0.0018 Score=49.66 Aligned_cols=25 Identities=36% Similarity=0.436 Sum_probs=21.2
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHh
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
...-.++|+|++|+|||||++.++.
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhh
Confidence 3456899999999999999998863
No 465
>PRK14530 adenylate kinase; Provisional
Probab=96.64 E-value=0.0019 Score=51.27 Aligned_cols=22 Identities=23% Similarity=0.437 Sum_probs=20.0
Q ss_pred ceEEEECCCCCCHHHHHHHHHh
Q psy549 50 RRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
.+|+|+|+|||||||+.+.|..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999863
No 466
>KOG1970|consensus
Probab=96.63 E-value=0.022 Score=50.53 Aligned_cols=86 Identities=10% Similarity=0.043 Sum_probs=47.3
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHh-cCCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHH
Q psy549 124 AFVLVYAVDDASTWDVVKDLREQIVNK-RGLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQ 201 (253)
Q Consensus 124 ~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 201 (253)
.+|+|=|+-+..-++..+.+.+.+..+ .....|+|+|++-+-.... .......+.+.. ..++..+..+.....-+..
T Consensus 196 ~liLveDLPn~~~~d~~~~f~evL~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~-~~ri~~IsFNPIa~T~MKK 274 (634)
T KOG1970|consen 196 KLILVEDLPNQFYRDDSETFREVLRLYVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQE-EPRISNISFNPIAPTIMKK 274 (634)
T ss_pred eEEEeeccchhhhhhhHHHHHHHHHHHHhcCCCcEEEEEeccccCCCcchhhhchhhhhh-ccCcceEeecCCcHHHHHH
Confidence 457787776654444444444444442 2356899999988766433 122222233333 4555566666655555666
Q ss_pred HHHHHHHHH
Q psy549 202 VFKELLAQA 210 (253)
Q Consensus 202 l~~~l~~~~ 210 (253)
.+..|+...
T Consensus 275 ~L~ric~~e 283 (634)
T KOG1970|consen 275 FLKRICRIE 283 (634)
T ss_pred HHHHHHHHh
Confidence 666555543
No 467
>PRK10646 ADP-binding protein; Provisional
Probab=96.63 E-value=0.01 Score=44.18 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=20.3
Q ss_pred ceEEEECCCCCCHHHHHHHHHhC
Q psy549 50 RRVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
--|++-|+-|+|||||++.+...
T Consensus 29 ~vi~L~GdLGaGKTtf~rgl~~~ 51 (153)
T PRK10646 29 TVIYLYGDLGAGKTTFSRGFLQA 51 (153)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999999863
No 468
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.61 E-value=0.0027 Score=48.62 Aligned_cols=28 Identities=18% Similarity=0.258 Sum_probs=23.3
Q ss_pred CCCCcceEEEECCCCCCHHHHHHHHHhC
Q psy549 45 LQKDKRRVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 45 ~~~~~~~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
+.....-|+|.|.+|+||||+++.+...
T Consensus 3 ~~~~~~~I~i~G~~GsGKst~a~~l~~~ 30 (176)
T PRK05541 3 MKPNGYVIWITGLAGSGKTTIAKALYER 30 (176)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3456679999999999999999988753
No 469
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.61 E-value=0.0043 Score=48.07 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=21.7
Q ss_pred cceEEEECCCCCCHHHHHHHHHhCC
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYDR 73 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~~ 73 (253)
..-|+|+|++|||||||+++|+...
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcC
Confidence 3568999999999999999998753
No 470
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.61 E-value=0.0017 Score=52.52 Aligned_cols=22 Identities=18% Similarity=0.258 Sum_probs=19.6
Q ss_pred ceEEEECCCCCCHHHHHHHHHh
Q psy549 50 RRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
=-++|+|+.|||||||++.+.+
T Consensus 29 ~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 29 EITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4578999999999999999885
No 471
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.61 E-value=0.0022 Score=48.99 Aligned_cols=26 Identities=31% Similarity=0.480 Sum_probs=22.5
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCC
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDR 73 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~ 73 (253)
...-++|.||+|+|||||++.|+...
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhc
Confidence 34568999999999999999999765
No 472
>PRK03839 putative kinase; Provisional
Probab=96.58 E-value=0.0021 Score=49.46 Aligned_cols=22 Identities=18% Similarity=0.345 Sum_probs=19.8
Q ss_pred eEEEECCCCCCHHHHHHHHHhC
Q psy549 51 RVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
+|+|+|.||+||||+.++|...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998753
No 473
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.57 E-value=0.0075 Score=49.48 Aligned_cols=115 Identities=14% Similarity=0.150 Sum_probs=60.8
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCC----C----C-C-Ccc-------ccceeeeeeeEEc-C-------------CCc
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDR----F----I-S-RYK-------ETVEELHRGEYEL-P-------------DGA 96 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~----~----~-~-~~~-------~t~~~~~~~~~~~-~-------------~~~ 96 (253)
+.-+|+|+|++|+||||++..+...- . . . .+. .+........+.. . ...
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 153 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 153 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence 44699999999999999998876421 1 0 0 000 0000000001000 0 112
Q ss_pred EEEEEEEeCCCCCCCh-hhHHH---hc--ccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCC
Q psy549 97 QLTLDILDTSGAYQFP-AMREL---SI--STADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEF 168 (253)
Q Consensus 97 ~~~~~l~D~~g~~~~~-~~~~~---~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 168 (253)
.+.+.++||+|..... ..... ++ ...+-+++|.+++... .....+...+.. -.+--+|+||.|...
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~--~d~~~~~~~f~~----~~~~~~I~TKlDet~ 225 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKD----IHIDGIVFTKFDETA 225 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH--HHHHHHHHHhCC----CCCCEEEEEeecCCC
Confidence 3678899999976432 21221 22 2346788899886432 223333333222 234477899999765
No 474
>PRK08233 hypothetical protein; Provisional
Probab=96.57 E-value=0.0024 Score=48.97 Aligned_cols=24 Identities=8% Similarity=0.218 Sum_probs=20.9
Q ss_pred cceEEEECCCCCCHHHHHHHHHhC
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
..-|+|.|.+|||||||.++|...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 367889999999999999998853
No 475
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=96.57 E-value=0.11 Score=39.58 Aligned_cols=84 Identities=12% Similarity=0.081 Sum_probs=49.9
Q ss_pred EEEEEeCCCCCCChhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHH
Q psy549 99 TLDILDTSGAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAET 178 (253)
Q Consensus 99 ~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~ 178 (253)
.+.++|+|+.... .....+..+|.+|++.+.... ++.....++..+... ......+|+|+.+.... ...+..+.
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~-s~~~~~~~~~~~~~~--~~~~~~iv~N~~~~~~~-~~~~~~~~ 137 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEIS-SLRDADRVKGLLEAL--GIKVVGVIVNRVRPDMV-EGGDMVED 137 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCcc-hHHHHHHHHHHHHHc--CCceEEEEEeCCccccc-chhhHHHH
Confidence 5789999875432 344556889999999987643 445555555555442 22356788999986432 22222344
Q ss_pred HHHhcCCCcEE
Q psy549 179 IALYDWQCGFV 189 (253)
Q Consensus 179 ~~~~~~~~~~~ 189 (253)
+.+ ..+.+++
T Consensus 138 ~~~-~~~~~v~ 147 (179)
T cd02036 138 IEE-ILGVPLL 147 (179)
T ss_pred HHH-HhCCCEE
Confidence 444 3344543
No 476
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.54 E-value=0.0021 Score=49.32 Aligned_cols=22 Identities=32% Similarity=0.604 Sum_probs=20.1
Q ss_pred eEEEECCCCCCHHHHHHHHHhC
Q psy549 51 RVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
.|+|+|++|||||||++.|...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 5899999999999999999874
No 477
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.54 E-value=0.0018 Score=50.54 Aligned_cols=22 Identities=18% Similarity=0.363 Sum_probs=18.7
Q ss_pred ceEEEECCCCCCHHHHHHHHHh
Q psy549 50 RRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
--.+++||+|||||||++.|-.
T Consensus 34 ~VTAlIGPSGcGKST~LR~lNR 55 (253)
T COG1117 34 KVTALIGPSGCGKSTLLRCLNR 55 (253)
T ss_pred ceEEEECCCCcCHHHHHHHHHh
Confidence 3468999999999999988764
No 478
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.53 E-value=0.0026 Score=49.10 Aligned_cols=23 Identities=17% Similarity=0.398 Sum_probs=20.2
Q ss_pred cceEEEECCCCCCHHHHHHHHHh
Q psy549 49 KRRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
...|+|+|++||||||+++.+..
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999873
No 479
>PRK01889 GTPase RsgA; Reviewed
Probab=96.53 E-value=0.0029 Score=54.17 Aligned_cols=25 Identities=28% Similarity=0.603 Sum_probs=22.2
Q ss_pred cceEEEECCCCCCHHHHHHHHHhCC
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYDR 73 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~~ 73 (253)
.-+++|+|.+|+|||||+|.+.+..
T Consensus 195 g~~~~lvG~sgvGKStLin~L~g~~ 219 (356)
T PRK01889 195 GKTVALLGSSGVGKSTLVNALLGEE 219 (356)
T ss_pred CCEEEEECCCCccHHHHHHHHHHhc
Confidence 4589999999999999999999754
No 480
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.52 E-value=0.0021 Score=51.19 Aligned_cols=21 Identities=24% Similarity=0.267 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHhC
Q psy549 52 VVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 52 I~iiG~~~~GKSsLi~~l~~~ 72 (253)
|+|.|++|||||||++.|.+.
T Consensus 2 igI~G~sGSGKTTla~~L~~~ 22 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHH
Confidence 789999999999999998863
No 481
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.51 E-value=0.0024 Score=46.86 Aligned_cols=21 Identities=19% Similarity=0.428 Sum_probs=19.1
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q psy549 51 RVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~ 71 (253)
.|+++|++|+|||+|++.+..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~ 21 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAA 21 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998885
No 482
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.50 E-value=0.015 Score=44.93 Aligned_cols=26 Identities=19% Similarity=0.511 Sum_probs=22.2
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCC
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDR 73 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~ 73 (253)
..-.++|+|++|+|||||++.+++--
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 34579999999999999999988643
No 483
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.50 E-value=0.0021 Score=54.07 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=19.4
Q ss_pred eEEEECCCCCCHHHHHHHHHhC
Q psy549 51 RVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
-++++||+|||||||++.+.+=
T Consensus 31 f~vllGPSGcGKSTlLr~IAGL 52 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGL 52 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999998863
No 484
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.50 E-value=0.0024 Score=50.71 Aligned_cols=26 Identities=19% Similarity=0.211 Sum_probs=22.2
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCC
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDR 73 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~ 73 (253)
..=.++|+|++|+|||||++.+.+-.
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 34578999999999999999998754
No 485
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.50 E-value=0.0023 Score=50.70 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=19.6
Q ss_pred ceEEEECCCCCCHHHHHHHHHh
Q psy549 50 RRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
=-|+|+|++|+|||||++.+.+
T Consensus 31 E~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 31 EMVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred cEEEEECCCCCcHHHHHHHHhc
Confidence 3689999999999999998776
No 486
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.50 E-value=0.0032 Score=49.45 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=22.0
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhC
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
..-.|+|+|++|||||||++.+.+.
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4567999999999999999998874
No 487
>PRK04195 replication factor C large subunit; Provisional
Probab=96.49 E-value=0.04 Score=49.31 Aligned_cols=25 Identities=28% Similarity=0.476 Sum_probs=21.5
Q ss_pred cceEEEECCCCCCHHHHHHHHHhCC
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYDR 73 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~~ 73 (253)
.-.++|.|++|+||||+++.+...-
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3568999999999999999998753
No 488
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.48 E-value=0.0029 Score=48.20 Aligned_cols=24 Identities=8% Similarity=0.239 Sum_probs=21.0
Q ss_pred cceEEEECCCCCCHHHHHHHHHhC
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
..-++|+|.+|+|||||++++...
T Consensus 6 ~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 6 IPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred ceEEEEECCCCChHHHHHHHHHHH
Confidence 346899999999999999999864
No 489
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.48 E-value=0.0025 Score=50.27 Aligned_cols=26 Identities=19% Similarity=0.198 Sum_probs=22.1
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCC
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDR 73 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~ 73 (253)
..=.++|+|++|+|||||++.+.+-.
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34578999999999999999988754
No 490
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.47 E-value=0.0026 Score=49.39 Aligned_cols=24 Identities=17% Similarity=0.249 Sum_probs=21.1
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCC
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDR 73 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~ 73 (253)
=.++|+|++|+|||||++.+.+-.
T Consensus 19 e~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 19 EVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999888754
No 491
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.47 E-value=0.0026 Score=50.48 Aligned_cols=26 Identities=23% Similarity=0.307 Sum_probs=22.2
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCC
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDR 73 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~ 73 (253)
..=.++|+|++|+|||||++.+.+-.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34578999999999999999988754
No 492
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.46 E-value=0.021 Score=48.38 Aligned_cols=26 Identities=23% Similarity=0.543 Sum_probs=22.9
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCC
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDR 73 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~ 73 (253)
...+|+|.|++|+|||||+++++..-
T Consensus 159 ~~~nili~G~tgSGKTTll~aL~~~i 184 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALREI 184 (332)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHhhC
Confidence 46799999999999999999988644
No 493
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.45 E-value=0.012 Score=54.75 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=19.7
Q ss_pred ceEEEECCCCCCHHHHHHHHHh
Q psy549 50 RRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
-.|+|+|+.||||||.+..|..
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~ 207 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAA 207 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHh
Confidence 4789999999999999998874
No 494
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.44 E-value=0.0028 Score=50.03 Aligned_cols=24 Identities=13% Similarity=0.167 Sum_probs=21.4
Q ss_pred cceEEEECCCCCCHHHHHHHHHhCC
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYDR 73 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~~ 73 (253)
. .++|+|++|+|||||++.+.+-.
T Consensus 26 g-~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 26 G-MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred C-cEEEECCCCCCHHHHHHHHhCCC
Confidence 5 89999999999999999988743
No 495
>PRK13949 shikimate kinase; Provisional
Probab=96.43 E-value=0.003 Score=48.12 Aligned_cols=21 Identities=19% Similarity=0.355 Sum_probs=19.4
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q psy549 51 RVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~ 71 (253)
+|+|+|.+|+||||+...+..
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998775
No 496
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.43 E-value=0.0026 Score=51.30 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=20.3
Q ss_pred ceEEEECCCCCCHHHHHHHHHh
Q psy549 50 RRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
=-++|+||.|+|||||+..+++
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4679999999999999999997
No 497
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.43 E-value=0.0028 Score=50.16 Aligned_cols=26 Identities=12% Similarity=0.224 Sum_probs=22.0
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCC
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDR 73 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~ 73 (253)
..=.++|+|++|+|||||++.+.+-.
T Consensus 27 ~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 27 KGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34578999999999999999888753
No 498
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.42 E-value=0.0028 Score=49.79 Aligned_cols=26 Identities=12% Similarity=0.114 Sum_probs=22.1
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCC
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDR 73 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~ 73 (253)
..=.++|+|++|+|||||++.+.+-.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 25 AGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34578999999999999999988754
No 499
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.42 E-value=0.022 Score=48.46 Aligned_cols=27 Identities=11% Similarity=0.253 Sum_probs=23.5
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCC
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDR 73 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~ 73 (253)
....+|+|.|+.|+|||||++.|++.-
T Consensus 160 ~~~~nilI~G~tGSGKTTll~aLl~~i 186 (344)
T PRK13851 160 VGRLTMLLCGPTGSGKTTMSKTLISAI 186 (344)
T ss_pred HcCCeEEEECCCCccHHHHHHHHHccc
Confidence 356789999999999999999998654
No 500
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.42 E-value=0.0028 Score=50.94 Aligned_cols=25 Identities=16% Similarity=0.247 Sum_probs=21.7
Q ss_pred cceEEEECCCCCCHHHHHHHHHhCC
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYDR 73 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~~ 73 (253)
.=.++|+|++|+|||||++.+.+-.
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 26 GEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3478999999999999999998754
Done!