Query psy549
Match_columns 253
No_of_seqs 161 out of 1889
Neff 9.9
Searched_HMMs 29240
Date Fri Aug 16 18:50:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy549.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/549hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 5.2E-39 1.8E-43 254.2 19.3 166 46-213 10-177 (216)
2 2bov_A RAla, RAS-related prote 100.0 4.8E-32 1.7E-36 212.5 21.8 166 46-213 11-178 (206)
3 2bcg_Y Protein YP2, GTP-bindin 100.0 2.4E-31 8.1E-36 208.9 22.4 170 46-217 5-176 (206)
4 2gf0_A GTP-binding protein DI- 100.0 9.2E-32 3.1E-36 209.9 18.7 166 44-211 3-170 (199)
5 3kkq_A RAS-related protein M-R 100.0 3.4E-31 1.2E-35 204.0 20.9 167 44-212 13-182 (183)
6 3ihw_A Centg3; RAS, centaurin, 100.0 4.9E-31 1.7E-35 203.8 21.5 166 42-214 13-182 (184)
7 2ew1_A RAS-related protein RAB 100.0 2.1E-31 7.3E-36 208.7 19.4 170 43-214 20-191 (201)
8 2gf9_A RAS-related protein RAB 100.0 4.6E-31 1.6E-35 204.5 21.0 170 42-213 15-186 (189)
9 2a5j_A RAS-related protein RAB 100.0 3.1E-31 1.1E-35 205.9 20.0 172 41-214 13-186 (191)
10 4dsu_A GTPase KRAS, isoform 2B 100.0 5E-31 1.7E-35 203.8 21.0 165 48-214 3-168 (189)
11 2fn4_A P23, RAS-related protei 100.0 8.1E-31 2.8E-35 201.2 21.7 167 46-214 6-174 (181)
12 2a9k_A RAS-related protein RAL 100.0 1.1E-30 3.6E-35 201.5 22.2 168 44-213 13-182 (187)
13 2hup_A RAS-related protein RAB 100.0 4.7E-31 1.6E-35 206.7 20.0 168 45-214 25-195 (201)
14 2j0v_A RAC-like GTP-binding pr 100.0 3E-31 1E-35 209.2 18.5 165 47-213 7-181 (212)
15 3c5c_A RAS-like protein 12; GD 100.0 3E-31 1E-35 205.5 18.1 163 46-211 18-185 (187)
16 2il1_A RAB12; G-protein, GDP, 100.0 3.7E-31 1.3E-35 205.7 18.7 171 42-213 19-191 (192)
17 3cpj_B GTP-binding protein YPT 100.0 3.1E-31 1.1E-35 211.0 18.1 168 47-216 11-180 (223)
18 3t5g_A GTP-binding protein RHE 100.0 4.3E-31 1.5E-35 203.1 18.3 165 47-213 4-170 (181)
19 1vg8_A RAS-related protein RAB 100.0 4.5E-31 1.5E-35 207.3 18.6 169 46-215 5-178 (207)
20 3tkl_A RAS-related protein RAB 100.0 1.5E-30 5.2E-35 202.4 21.5 168 46-215 13-182 (196)
21 1c1y_A RAS-related protein RAP 100.0 1.6E-30 5.4E-35 197.0 20.9 162 48-210 2-165 (167)
22 1wms_A RAB-9, RAB9, RAS-relate 100.0 1.6E-30 5.6E-35 198.9 21.0 167 45-212 3-174 (177)
23 2q3h_A RAS homolog gene family 100.0 8.6E-31 2.9E-35 204.9 19.8 168 44-213 15-196 (201)
24 2atx_A Small GTP binding prote 100.0 1.6E-30 5.6E-35 202.2 21.2 164 46-211 15-192 (194)
25 3q3j_B RHO-related GTP-binding 100.0 2.9E-31 1E-35 209.9 17.1 168 43-213 21-204 (214)
26 1z0f_A RAB14, member RAS oncog 100.0 1.3E-30 4.5E-35 199.6 20.0 164 46-211 12-177 (179)
27 2g6b_A RAS-related protein RAB 100.0 1.7E-30 5.9E-35 199.4 20.3 167 45-213 6-175 (180)
28 1u8z_A RAS-related protein RAL 100.0 2.5E-30 8.5E-35 195.8 20.5 162 48-211 3-166 (168)
29 2bme_A RAB4A, RAS-related prot 100.0 2.6E-30 9E-35 199.5 20.6 169 46-216 7-177 (186)
30 1z08_A RAS-related protein RAB 100.0 1.3E-30 4.3E-35 198.2 18.3 163 47-211 4-168 (170)
31 2iwr_A Centaurin gamma 1; ANK 100.0 3.3E-30 1.1E-34 197.6 20.6 161 47-214 5-171 (178)
32 1g16_A RAS-related protein SEC 100.0 1.4E-30 4.7E-35 197.9 18.1 164 48-213 2-166 (170)
33 2nzj_A GTP-binding protein REM 100.0 3.1E-30 1E-34 197.0 20.1 164 48-213 3-170 (175)
34 2oil_A CATX-8, RAS-related pro 100.0 3.4E-30 1.2E-34 200.2 20.6 167 46-214 22-190 (193)
35 3reg_A RHO-like small GTPase; 100.0 1.4E-30 4.9E-35 202.6 18.4 167 44-213 18-189 (194)
36 2fu5_C RAS-related protein RAB 100.0 4E-31 1.4E-35 203.6 15.1 166 47-214 6-173 (183)
37 2g3y_A GTP-binding protein GEM 100.0 1.7E-30 6E-35 204.7 19.1 167 45-213 33-204 (211)
38 1kao_A RAP2A; GTP-binding prot 100.0 3.4E-30 1.2E-34 194.9 19.8 163 48-212 2-166 (167)
39 3cbq_A GTP-binding protein REM 100.0 2.7E-30 9.2E-35 201.5 19.5 167 45-213 19-189 (195)
40 2efe_B Small GTP-binding prote 100.0 3.6E-30 1.2E-34 197.7 19.7 165 46-212 9-175 (181)
41 3con_A GTPase NRAS; structural 100.0 6.7E-30 2.3E-34 198.0 21.3 165 47-213 19-184 (190)
42 1r2q_A RAS-related protein RAB 100.0 3.2E-30 1.1E-34 195.7 18.7 162 47-210 4-167 (170)
43 3oes_A GTPase rhebl1; small GT 100.0 8.5E-31 2.9E-35 205.1 15.8 166 46-213 21-188 (201)
44 3dz8_A RAS-related protein RAB 100.0 2.2E-31 7.5E-36 206.8 12.3 168 46-215 20-189 (191)
45 3q72_A GTP-binding protein RAD 100.0 4.6E-30 1.6E-34 194.4 19.2 162 49-213 2-165 (166)
46 1ky3_A GTP-binding protein YPT 100.0 6.2E-30 2.1E-34 196.4 19.8 168 46-213 5-179 (182)
47 2p5s_A RAS and EF-hand domain 100.0 5.1E-30 1.8E-34 200.4 19.3 164 46-211 25-196 (199)
48 1gwn_A RHO-related GTP-binding 100.0 2.4E-30 8.2E-35 203.3 17.5 165 46-212 25-204 (205)
49 1zbd_A Rabphilin-3A; G protein 100.0 8.6E-30 2.9E-34 199.5 20.6 167 47-215 6-174 (203)
50 1ek0_A Protein (GTP-binding pr 100.0 2.6E-30 9E-35 196.2 16.9 161 48-210 2-167 (170)
51 2hxs_A RAB-26, RAS-related pro 100.0 3.4E-30 1.2E-34 197.4 17.7 166 46-212 3-173 (178)
52 2atv_A RERG, RAS-like estrogen 100.0 1E-29 3.6E-34 198.1 20.8 165 47-214 26-193 (196)
53 3cph_A RAS-related protein SEC 100.0 5E-30 1.7E-34 202.1 19.0 168 46-215 17-185 (213)
54 3q85_A GTP-binding protein REM 100.0 7.1E-30 2.4E-34 193.9 19.0 163 49-213 2-168 (169)
55 1z0j_A RAB-22, RAS-related pro 100.0 9E-30 3.1E-34 193.4 19.5 162 47-210 4-167 (170)
56 2o52_A RAS-related protein RAB 100.0 2.3E-30 7.9E-35 202.6 16.6 168 46-215 22-191 (200)
57 3tw8_B RAS-related protein RAB 100.0 3.5E-30 1.2E-34 197.6 17.1 166 46-214 6-173 (181)
58 2ce2_X GTPase HRAS; signaling 100.0 2.6E-29 8.7E-34 189.7 21.6 161 49-211 3-164 (166)
59 4gzl_A RAS-related C3 botulinu 100.0 3.6E-30 1.2E-34 202.1 17.3 164 45-210 26-203 (204)
60 3bc1_A RAS-related protein RAB 100.0 1.7E-29 5.9E-34 195.9 20.9 167 46-214 8-187 (195)
61 2fg5_A RAB-22B, RAS-related pr 100.0 7.7E-30 2.6E-34 198.3 18.8 164 46-211 20-185 (192)
62 1z06_A RAS-related protein RAB 100.0 8.3E-30 2.8E-34 197.5 18.5 164 46-211 17-187 (189)
63 1m7b_A RND3/RHOE small GTP-bin 100.0 4.8E-30 1.6E-34 198.0 17.1 164 47-212 5-183 (184)
64 2gco_A H9, RHO-related GTP-bin 100.0 2.5E-29 8.5E-34 196.8 20.8 167 43-211 19-199 (201)
65 1z2a_A RAS-related protein RAB 100.0 8.4E-30 2.9E-34 193.1 17.6 162 47-211 3-166 (168)
66 2erx_A GTP-binding protein DI- 100.0 1.4E-29 4.9E-34 192.5 18.5 161 48-210 2-165 (172)
67 2y8e_A RAB-protein 6, GH09086P 100.0 5.9E-30 2E-34 196.0 16.4 162 47-210 12-175 (179)
68 3clv_A RAB5 protein, putative; 100.0 5.8E-29 2E-33 194.4 22.3 164 47-214 5-206 (208)
69 1x3s_A RAS-related protein RAB 100.0 1.4E-29 4.7E-34 196.8 18.5 165 47-213 13-179 (195)
70 2j1l_A RHO-related GTP-binding 100.0 1.6E-29 5.5E-34 199.9 18.9 166 46-213 31-210 (214)
71 1mh1_A RAC1; GTP-binding, GTPa 100.0 2E-29 6.9E-34 194.3 18.6 162 48-211 4-179 (186)
72 4bas_A ADP-ribosylation factor 100.0 6.6E-30 2.3E-34 199.3 15.3 173 39-215 7-192 (199)
73 2f7s_A C25KG, RAS-related prot 100.0 4.4E-30 1.5E-34 203.3 14.3 169 45-215 21-202 (217)
74 4djt_A GTP-binding nuclear pro 100.0 1.3E-29 4.4E-34 200.7 16.9 170 45-215 7-178 (218)
75 3bwd_D RAC-like GTP-binding pr 100.0 7.9E-30 2.7E-34 196.0 15.2 162 47-210 6-179 (182)
76 2cjw_A GTP-binding protein GEM 100.0 7E-29 2.4E-33 193.0 19.3 165 48-214 5-174 (192)
77 2fv8_A H6, RHO-related GTP-bin 100.0 7.8E-29 2.7E-33 194.9 19.3 164 47-212 23-200 (207)
78 2yc2_C IFT27, small RAB-relate 100.0 1.5E-29 5.1E-34 198.5 13.9 167 47-215 18-195 (208)
79 1zd9_A ADP-ribosylation factor 100.0 1.8E-29 6.2E-34 195.5 14.0 169 39-211 12-184 (188)
80 3t1o_A Gliding protein MGLA; G 100.0 1.3E-28 4.6E-33 191.4 18.0 165 45-214 10-194 (198)
81 2h57_A ADP-ribosylation factor 100.0 3.2E-28 1.1E-32 188.6 17.6 164 44-211 16-186 (190)
82 3gj0_A GTP-binding nuclear pro 100.0 4E-29 1.4E-33 198.4 11.8 168 44-215 10-178 (221)
83 3l0i_B RAS-related protein RAB 100.0 8.3E-31 2.9E-35 204.9 0.9 165 46-212 30-196 (199)
84 1zj6_A ADP-ribosylation factor 100.0 8.7E-28 3E-32 185.7 17.6 160 47-211 14-177 (187)
85 1r8s_A ADP-ribosylation factor 100.0 7.5E-28 2.6E-32 181.8 16.3 157 50-211 1-161 (164)
86 1upt_A ARL1, ADP-ribosylation 100.0 2.1E-27 7.1E-32 180.5 18.3 161 47-212 5-169 (171)
87 1f6b_A SAR1; gtpases, N-termin 100.0 5.1E-28 1.7E-32 189.0 14.7 157 47-209 23-196 (198)
88 2h17_A ADP-ribosylation factor 100.0 3.6E-28 1.2E-32 187.0 13.4 162 43-209 15-180 (181)
89 1fzq_A ADP-ribosylation factor 100.0 8.7E-28 3E-32 185.0 15.5 161 47-212 14-178 (181)
90 1m2o_B GTP-binding protein SAR 100.0 9.3E-28 3.2E-32 186.3 15.7 157 47-209 21-189 (190)
91 1ksh_A ARF-like protein 2; sma 100.0 1.3E-27 4.6E-32 184.4 16.5 162 47-213 16-181 (186)
92 3llu_A RAS-related GTP-binding 100.0 9.2E-28 3.1E-32 187.1 15.5 170 39-210 10-195 (196)
93 2f9l_A RAB11B, member RAS onco 100.0 6.5E-27 2.2E-31 182.7 19.8 167 47-215 3-171 (199)
94 2b6h_A ADP-ribosylation factor 100.0 1.7E-27 5.8E-32 185.1 15.7 161 46-211 26-190 (192)
95 2fh5_B SR-beta, signal recogni 100.0 3.6E-27 1.2E-31 186.1 16.4 161 47-209 5-213 (214)
96 3th5_A RAS-related C3 botulinu 99.9 7.9E-30 2.7E-34 200.0 0.0 162 46-210 27-203 (204)
97 1oix_A RAS-related protein RAB 99.9 2.5E-26 8.4E-31 178.4 19.5 164 45-210 25-190 (191)
98 2wkq_A NPH1-1, RAS-related C3 99.9 1.1E-26 3.9E-31 194.9 19.0 163 47-211 153-329 (332)
99 1moz_A ARL1, ADP-ribosylation 99.9 2E-27 7E-32 182.7 12.6 162 47-213 16-181 (183)
100 2x77_A ADP-ribosylation factor 99.9 6.7E-27 2.3E-31 181.0 13.3 162 47-213 20-185 (189)
101 3c5h_A Glucocorticoid receptor 99.9 1.9E-27 6.4E-32 192.9 10.6 171 40-211 10-254 (255)
102 2zej_A Dardarin, leucine-rich 99.9 7.9E-27 2.7E-31 180.1 10.1 162 49-212 2-178 (184)
103 3o47_A ADP-ribosylation factor 99.9 4.6E-26 1.6E-30 191.1 14.7 161 46-211 162-326 (329)
104 2wji_A Ferrous iron transport 99.9 1.6E-25 5.4E-30 169.7 14.2 151 49-210 3-163 (165)
105 3r7w_A Gtpase1, GTP-binding pr 99.9 2.1E-25 7.3E-30 185.4 14.6 160 48-210 2-179 (307)
106 3lvq_E ARF-GAP with SH3 domain 99.9 2.4E-25 8.1E-30 196.9 15.3 163 46-213 319-485 (497)
107 2lkc_A Translation initiation 99.9 7E-25 2.4E-29 167.6 16.0 161 45-213 4-172 (178)
108 2qu8_A Putative nucleolar GTP- 99.9 1.6E-24 5.6E-29 172.7 18.2 164 46-214 26-207 (228)
109 2gj8_A MNME, tRNA modification 99.9 1.6E-25 5.5E-30 170.9 11.6 153 48-211 3-165 (172)
110 3iev_A GTP-binding protein ERA 99.9 4.2E-24 1.4E-28 177.6 18.8 164 44-212 5-182 (308)
111 3r7w_B Gtpase2, GTP-binding pr 99.9 5.4E-25 1.8E-29 181.9 9.2 154 51-212 1-174 (331)
112 2wjg_A FEOB, ferrous iron tran 99.9 3.1E-24 1.1E-28 165.7 12.9 156 48-213 6-170 (188)
113 1svi_A GTP-binding protein YSX 99.9 2.9E-24 1E-28 166.7 12.9 157 46-210 20-193 (195)
114 2dyk_A GTP-binding protein; GT 99.9 2.2E-24 7.5E-29 162.1 11.5 150 50-210 2-160 (161)
115 3pqc_A Probable GTP-binding pr 99.9 1.6E-23 5.5E-28 162.3 15.9 155 46-211 20-193 (195)
116 2cxx_A Probable GTP-binding pr 99.9 2.7E-24 9.3E-29 166.1 11.3 156 50-213 2-185 (190)
117 3a1s_A Iron(II) transport prot 99.9 1.2E-23 4.2E-28 170.5 13.4 154 48-211 4-166 (258)
118 3iby_A Ferrous iron transport 99.9 3.4E-24 1.1E-28 173.6 9.1 150 50-209 2-164 (256)
119 3b1v_A Ferrous iron uptake tra 99.9 9.8E-24 3.4E-28 172.1 10.8 152 49-211 3-163 (272)
120 1wf3_A GTP-binding protein; GT 99.9 6.8E-23 2.3E-27 169.6 15.3 156 47-210 5-171 (301)
121 3i8s_A Ferrous iron transport 99.9 1.4E-23 4.8E-28 171.7 9.8 154 48-211 2-168 (274)
122 4dhe_A Probable GTP-binding pr 99.9 5.9E-23 2E-27 162.8 12.7 162 46-213 26-212 (223)
123 3dpu_A RAB family protein; roc 99.9 2.3E-23 7.7E-28 185.6 11.4 163 46-213 38-209 (535)
124 3gee_A MNME, tRNA modification 99.9 8E-23 2.7E-27 178.6 13.8 156 48-211 232-397 (476)
125 2hjg_A GTP-binding protein ENG 99.9 5.5E-23 1.9E-27 178.8 11.7 160 47-213 173-350 (436)
126 3k53_A Ferrous iron transport 99.9 2.1E-22 7.2E-27 164.6 12.0 157 48-213 2-167 (271)
127 4dcu_A GTP-binding protein ENG 99.9 8.4E-22 2.9E-26 172.2 14.6 162 47-215 193-372 (456)
128 1xzp_A Probable tRNA modificat 99.9 1.1E-21 3.6E-26 171.6 15.0 152 49-212 243-405 (482)
129 3qq5_A Small GTP-binding prote 99.9 1.3E-22 4.6E-27 174.4 7.8 160 43-212 28-196 (423)
130 1mky_A Probable GTP-binding pr 99.9 2.3E-21 7.7E-26 168.7 15.4 154 50-213 2-167 (439)
131 1nrj_B SR-beta, signal recogni 99.9 2.3E-22 7.8E-27 158.9 8.1 143 46-198 9-170 (218)
132 1lnz_A SPO0B-associated GTP-bi 99.9 9.3E-22 3.2E-26 165.1 12.2 158 50-212 159-330 (342)
133 2e87_A Hypothetical protein PH 99.9 1.4E-20 4.6E-25 159.7 19.3 161 47-213 165-337 (357)
134 3sjy_A Translation initiation 99.9 1.4E-20 4.7E-25 162.1 17.5 164 46-211 5-191 (403)
135 1mky_A Probable GTP-binding pr 99.8 2.3E-20 8E-25 162.4 16.0 160 47-213 178-356 (439)
136 3geh_A MNME, tRNA modification 99.8 3.3E-21 1.1E-25 167.8 10.5 153 48-213 223-385 (462)
137 2qtf_A Protein HFLX, GTP-bindi 99.8 1.1E-19 3.7E-24 153.9 17.6 161 49-213 178-355 (364)
138 2hjg_A GTP-binding protein ENG 99.8 3.3E-21 1.1E-25 167.6 7.3 151 50-211 4-164 (436)
139 1wb1_A Translation elongation 99.8 5.8E-20 2E-24 161.2 14.8 159 46-211 16-188 (482)
140 1ega_A Protein (GTP-binding pr 99.8 3.1E-20 1.1E-24 153.8 12.3 154 48-210 7-173 (301)
141 2ywe_A GTP-binding protein LEP 99.8 9.2E-20 3.1E-24 162.7 15.5 159 47-211 4-183 (600)
142 3cb4_D GTP-binding protein LEP 99.8 7.2E-20 2.5E-24 163.6 14.8 158 48-211 3-181 (599)
143 3izy_P Translation initiation 99.8 1E-21 3.4E-26 173.2 2.6 157 48-211 3-167 (537)
144 2ged_A SR-beta, signal recogni 99.8 5.3E-20 1.8E-24 142.4 11.5 128 47-180 46-182 (193)
145 2xtp_A GTPase IMAP family memb 99.8 8E-20 2.8E-24 148.3 12.8 163 46-213 19-209 (260)
146 2xtz_A Guanine nucleotide-bind 99.8 2.1E-20 7.3E-25 157.3 8.1 118 96-213 181-346 (354)
147 3lxw_A GTPase IMAP family memb 99.8 2.2E-19 7.5E-24 144.6 13.7 164 46-213 18-209 (247)
148 3j2k_7 ERF3, eukaryotic polype 99.8 3.2E-19 1.1E-23 154.9 14.9 157 45-204 13-217 (439)
149 1cip_A Protein (guanine nucleo 99.8 9.2E-20 3.1E-24 153.5 10.8 118 97-214 192-346 (353)
150 1s0u_A EIF-2-gamma, translatio 99.8 8.7E-19 3E-23 151.1 15.6 160 46-211 5-197 (408)
151 3lxx_A GTPase IMAP family memb 99.8 6.9E-19 2.4E-23 141.0 14.0 162 45-212 25-214 (239)
152 1g7s_A Translation initiation 99.8 5.6E-19 1.9E-23 158.0 14.2 158 48-212 4-218 (594)
153 3tr5_A RF-3, peptide chain rel 99.8 2.3E-19 7.9E-24 158.6 11.1 115 48-169 12-149 (528)
154 1kk1_A EIF2gamma; initiation o 99.8 1.6E-18 5.6E-23 149.5 15.1 160 46-211 7-199 (410)
155 3t5d_A Septin-7; GTP-binding p 99.8 3.8E-19 1.3E-23 145.5 10.4 158 47-211 6-203 (274)
156 2elf_A Protein translation elo 99.8 2.1E-18 7.1E-23 146.5 15.2 147 51-213 23-181 (370)
157 3p26_A Elongation factor 1 alp 99.8 5.8E-19 2E-23 155.2 12.0 151 47-201 31-227 (483)
158 2c78_A Elongation factor TU-A; 99.8 1.7E-18 5.7E-23 149.2 13.7 146 46-198 8-180 (405)
159 1d2e_A Elongation factor TU (E 99.8 9.7E-19 3.3E-23 150.2 11.8 156 48-210 2-193 (397)
160 4dcu_A GTP-binding protein ENG 99.8 1.8E-19 6E-24 157.6 7.2 154 47-211 21-184 (456)
161 2aka_B Dynamin-1; fusion prote 99.8 6.5E-19 2.2E-23 145.6 9.5 163 46-211 23-252 (299)
162 3ohm_A Guanine nucleotide-bind 99.8 3.1E-19 1.1E-23 148.3 7.1 118 97-214 166-320 (327)
163 1zcb_A G alpha I/13; GTP-bindi 99.8 6.4E-19 2.2E-23 148.8 9.0 117 97-213 200-354 (362)
164 1jny_A EF-1-alpha, elongation 99.8 2.9E-19 9.9E-24 155.2 6.7 154 47-204 4-205 (435)
165 2qag_A Septin-2, protein NEDD5 99.8 4E-19 1.4E-23 150.6 7.3 160 48-214 36-235 (361)
166 3izq_1 HBS1P, elongation facto 99.8 1.9E-18 6.4E-23 155.4 11.8 154 46-202 164-362 (611)
167 1zo1_I IF2, translation initia 99.8 1.1E-19 3.8E-24 158.9 3.4 154 48-208 3-163 (501)
168 1r5b_A Eukaryotic peptide chai 99.8 5.1E-19 1.7E-23 154.8 6.9 154 47-203 41-243 (467)
169 1f60_A Elongation factor EEF1A 99.8 4.7E-19 1.6E-23 154.6 6.1 149 47-202 5-202 (458)
170 1zun_B Sulfate adenylate trans 99.8 9.1E-18 3.1E-22 145.8 14.1 152 47-204 22-216 (434)
171 4fid_A G protein alpha subunit 99.8 1.7E-18 5.9E-23 144.3 9.1 116 97-212 160-328 (340)
172 1pui_A ENGB, probable GTP-bind 99.7 2.4E-17 8.2E-22 129.1 12.4 156 46-211 23-198 (210)
173 2j69_A Bacterial dynamin-like 99.7 2.1E-17 7E-22 150.9 13.5 164 47-213 67-326 (695)
174 1udx_A The GTP-binding protein 99.7 8.1E-17 2.8E-21 138.1 16.0 160 49-213 157-326 (416)
175 2dy1_A Elongation factor G; tr 99.7 4.5E-17 1.6E-21 148.0 15.2 116 47-167 7-139 (665)
176 3def_A T7I23.11 protein; chlor 99.7 3.5E-17 1.2E-21 132.9 11.2 117 48-168 35-165 (262)
177 3avx_A Elongation factor TS, e 99.7 2.5E-17 8.7E-22 154.1 11.4 160 46-210 293-484 (1289)
178 1dar_A EF-G, elongation factor 99.7 2.1E-16 7.2E-21 144.2 14.6 116 47-169 10-144 (691)
179 1wxq_A GTP-binding protein; st 99.7 2.6E-17 8.8E-22 140.9 8.0 85 50-134 1-114 (397)
180 3mca_A HBS1, elongation factor 99.7 6.1E-18 2.1E-22 151.7 3.7 148 46-200 174-371 (592)
181 3t34_A Dynamin-related protein 99.7 7.2E-17 2.5E-21 136.9 10.0 158 48-208 33-257 (360)
182 2qnr_A Septin-2, protein NEDD5 99.7 3.4E-17 1.1E-21 135.5 6.7 160 47-213 16-215 (301)
183 2rdo_7 EF-G, elongation factor 99.7 2.3E-15 8E-20 137.5 18.9 120 46-169 7-149 (704)
184 2xex_A Elongation factor G; GT 99.7 2.4E-15 8.2E-20 137.2 18.2 116 47-169 8-142 (693)
185 2h5e_A Peptide chain release f 99.7 8.3E-17 2.9E-21 142.4 8.2 128 48-181 12-160 (529)
186 1jwy_B Dynamin A GTPase domain 99.7 5.2E-16 1.8E-20 129.2 12.3 111 98-212 131-262 (315)
187 1h65_A Chloroplast outer envel 99.7 2.1E-16 7.2E-21 128.9 9.6 118 48-169 38-169 (270)
188 1u0l_A Probable GTPase ENGC; p 99.7 5.1E-17 1.7E-21 134.5 4.6 135 64-208 32-169 (301)
189 3p32_A Probable GTPase RV1496/ 99.6 2.4E-16 8.2E-21 133.4 7.4 104 98-212 172-284 (355)
190 1jal_A YCHF protein; nucleotid 99.6 1.5E-14 5E-19 121.6 17.4 85 49-133 2-108 (363)
191 2www_A Methylmalonic aciduria 99.6 1.3E-15 4.3E-20 128.5 7.9 104 98-212 167-279 (349)
192 2qag_C Septin-7; cell cycle, c 99.6 1E-15 3.5E-20 131.3 7.2 158 47-210 29-225 (418)
193 1azs_C GS-alpha; complex (lyas 99.6 1.9E-15 6.5E-20 128.7 8.0 116 98-213 217-386 (402)
194 2x2e_A Dynamin-1; nitration, h 99.6 8.5E-16 2.9E-20 129.9 4.8 160 47-209 29-255 (353)
195 3vqt_A RF-3, peptide chain rel 99.6 1.8E-14 6.2E-19 128.0 13.4 117 48-169 30-167 (548)
196 2wsm_A Hydrogenase expression/ 99.6 5.7E-15 2E-19 116.5 8.9 154 48-212 29-214 (221)
197 2dby_A GTP-binding protein; GD 99.6 6.2E-14 2.1E-18 118.5 14.5 84 50-133 2-111 (368)
198 2qpt_A EH domain-containing pr 99.5 1.4E-14 4.9E-19 128.8 10.3 121 46-169 62-233 (550)
199 1n0u_A EF-2, elongation factor 99.5 2.2E-14 7.5E-19 133.4 10.7 118 47-168 17-164 (842)
200 2hf9_A Probable hydrogenase ni 99.5 3.4E-16 1.2E-20 124.0 -2.0 153 48-211 37-223 (226)
201 2p67_A LAO/AO transport system 99.5 1.7E-14 5.9E-19 121.3 6.8 103 98-211 149-260 (341)
202 1yrb_A ATP(GTP)binding protein 99.5 1.9E-13 6.4E-18 110.6 10.9 114 98-212 109-257 (262)
203 3j25_A Tetracycline resistance 99.5 6.2E-14 2.1E-18 126.9 8.7 115 50-169 3-134 (638)
204 4a9a_A Ribosome-interacting GT 99.5 9.8E-13 3.4E-17 111.1 14.7 118 46-168 69-196 (376)
205 4fn5_A EF-G 1, elongation fact 99.4 6.8E-12 2.3E-16 115.0 17.9 119 47-169 11-152 (709)
206 3zvr_A Dynamin-1; hydrolase, D 99.4 3E-13 1E-17 123.2 8.8 158 47-209 49-275 (772)
207 2ohf_A Protein OLA1, GTP-bindi 99.4 6E-13 2.1E-17 112.9 6.2 91 47-137 20-132 (396)
208 2qm8_A GTPase/ATPase; G protei 99.3 2.3E-12 7.9E-17 108.0 8.6 103 98-211 148-260 (337)
209 2yv5_A YJEQ protein; hydrolase 99.3 1.2E-11 4.3E-16 102.1 9.2 96 108-207 66-164 (302)
210 1ni3_A YCHF GTPase, YCHF GTP-b 99.3 2.2E-10 7.4E-15 97.4 16.4 88 46-133 17-127 (392)
211 3l82_B F-box only protein 4; T 99.2 1E-11 3.6E-16 95.4 4.8 106 106-212 110-223 (227)
212 3l2o_B F-box only protein 4; s 99.1 1.9E-10 6.5E-15 92.7 8.0 107 105-211 194-307 (312)
213 3ec1_A YQEH GTPase; atnos1, at 98.9 1.3E-10 4.3E-15 98.6 -1.7 139 49-198 162-317 (369)
214 2qag_B Septin-6, protein NEDD5 98.8 2.2E-08 7.6E-13 85.7 11.1 114 50-169 43-191 (427)
215 3h2y_A GTPase family protein; 98.8 1.7E-08 5.8E-13 85.5 8.7 97 107-210 55-158 (368)
216 3h2y_A GTPase family protein; 98.7 2.9E-10 9.8E-15 96.4 -3.5 134 49-193 160-311 (368)
217 2j37_W Signal recognition part 98.7 2.3E-08 8E-13 87.6 7.3 155 48-209 100-310 (504)
218 3ec1_A YQEH GTPase; atnos1, at 98.6 7.1E-08 2.4E-12 81.7 8.2 97 107-210 57-160 (369)
219 3sop_A Neuronal-specific septi 98.6 6E-08 2E-12 78.6 7.2 114 49-169 2-155 (270)
220 1tq4_A IIGP1, interferon-induc 98.6 7E-07 2.4E-11 76.4 13.7 153 50-212 70-253 (413)
221 1puj_A YLQF, conserved hypothe 98.6 1.5E-07 5.3E-12 76.6 8.2 100 103-212 4-106 (282)
222 1puj_A YLQF, conserved hypothe 98.4 2.1E-07 7.1E-12 75.9 5.6 58 47-110 118-177 (282)
223 3dm5_A SRP54, signal recogniti 98.3 4.5E-06 1.5E-10 71.8 11.0 136 48-193 99-274 (443)
224 3cnl_A YLQF, putative uncharac 98.3 4.2E-07 1.5E-11 73.2 4.3 56 50-111 100-157 (262)
225 1f5n_A Interferon-induced guan 98.2 1.8E-06 6.1E-11 77.0 5.6 64 47-110 36-103 (592)
226 2v3c_C SRP54, signal recogniti 98.0 1.9E-05 6.6E-10 68.0 8.2 111 49-168 99-252 (432)
227 3kl4_A SRP54, signal recogniti 97.9 1.5E-05 5.1E-10 68.5 6.5 90 98-199 180-277 (433)
228 3cnl_A YLQF, putative uncharac 97.9 7.9E-06 2.7E-10 65.8 4.3 91 106-209 5-98 (262)
229 1j8m_F SRP54, signal recogniti 97.9 5.8E-05 2E-09 61.8 9.5 91 98-201 181-280 (297)
230 2rcn_A Probable GTPase ENGC; Y 97.8 6.2E-05 2.1E-09 63.1 8.7 84 118-206 127-213 (358)
231 1t9h_A YLOQ, probable GTPase E 97.8 1E-05 3.4E-10 66.5 3.4 87 113-204 78-169 (307)
232 3szr_A Interferon-induced GTP- 97.7 6.3E-05 2.2E-09 67.7 7.8 23 51-73 47-69 (608)
233 1bif_A 6-phosphofructo-2-kinas 97.7 3.6E-06 1.2E-10 73.6 -0.5 100 47-149 37-147 (469)
234 3q5d_A Atlastin-1; G protein, 97.5 0.0012 4.2E-08 56.9 11.6 64 47-112 65-154 (447)
235 1ye8_A Protein THEP1, hypothet 97.3 0.00017 5.7E-09 54.5 3.5 23 50-72 1-23 (178)
236 3ney_A 55 kDa erythrocyte memb 97.1 0.00033 1.1E-08 53.6 4.0 25 48-72 18-42 (197)
237 1kgd_A CASK, peripheral plasma 97.1 0.00026 9E-09 53.3 3.3 23 50-72 6-28 (180)
238 1zp6_A Hypothetical protein AT 97.1 0.00031 1.1E-08 53.2 3.6 26 47-72 7-32 (191)
239 1lvg_A Guanylate kinase, GMP k 97.1 0.00029 9.9E-09 54.0 3.3 22 50-71 5-26 (198)
240 4dzz_A Plasmid partitioning pr 97.0 0.0021 7.4E-08 49.0 7.8 79 98-181 76-156 (206)
241 1znw_A Guanylate kinase, GMP k 97.0 0.00045 1.5E-08 53.2 3.6 26 47-72 18-43 (207)
242 1t9h_A YLOQ, probable GTPase E 97.0 0.00033 1.1E-08 57.5 2.7 25 49-73 173-197 (307)
243 3tr0_A Guanylate kinase, GMP k 97.0 0.00043 1.5E-08 53.0 3.3 23 50-72 8-30 (205)
244 3a00_A Guanylate kinase, GMP k 97.0 0.00043 1.5E-08 52.4 3.2 22 51-72 3-24 (186)
245 2xxa_A Signal recognition part 96.9 0.0031 1.1E-07 54.3 8.4 65 98-169 184-255 (433)
246 3c8u_A Fructokinase; YP_612366 96.9 0.00056 1.9E-08 52.8 3.3 25 48-72 21-45 (208)
247 1z6g_A Guanylate kinase; struc 96.9 0.00054 1.9E-08 53.3 3.2 25 49-73 23-47 (218)
248 1s96_A Guanylate kinase, GMP k 96.9 0.00056 1.9E-08 53.4 3.3 26 48-73 15-40 (219)
249 4gp7_A Metallophosphoesterase; 96.9 0.00047 1.6E-08 51.5 2.6 21 50-70 10-30 (171)
250 1htw_A HI0065; nucleotide-bind 96.8 0.00076 2.6E-08 49.8 3.2 24 50-73 34-57 (158)
251 1ex7_A Guanylate kinase; subst 96.8 0.00079 2.7E-08 51.1 3.2 21 52-72 4-24 (186)
252 3tif_A Uncharacterized ABC tra 96.8 0.0007 2.4E-08 53.4 3.0 24 50-73 32-55 (235)
253 3tau_A Guanylate kinase, GMP k 96.7 0.0011 3.8E-08 51.1 4.0 26 48-73 7-32 (208)
254 1kag_A SKI, shikimate kinase I 96.7 0.00093 3.2E-08 49.6 3.2 23 50-72 5-27 (173)
255 3umf_A Adenylate kinase; rossm 96.7 0.0013 4.5E-08 51.1 4.1 22 50-71 30-51 (217)
256 3asz_A Uridine kinase; cytidin 96.7 0.00096 3.3E-08 51.3 3.3 24 48-71 5-28 (211)
257 2j41_A Guanylate kinase; GMP, 96.7 0.0012 4.1E-08 50.4 3.8 25 49-73 6-30 (207)
258 2pcj_A ABC transporter, lipopr 96.7 0.00082 2.8E-08 52.6 2.8 24 50-73 31-54 (224)
259 2cdn_A Adenylate kinase; phosp 96.7 0.0014 4.9E-08 50.0 4.1 25 47-71 18-42 (201)
260 2onk_A Molybdate/tungstate ABC 96.7 0.001 3.5E-08 52.6 3.3 24 50-73 25-48 (240)
261 2i3b_A HCR-ntpase, human cance 96.7 0.0011 3.6E-08 50.5 3.3 21 51-71 3-23 (189)
262 2bdt_A BH3686; alpha-beta prot 96.7 0.0011 3.7E-08 50.1 3.2 21 51-71 4-24 (189)
263 2qor_A Guanylate kinase; phosp 96.6 0.0013 4.4E-08 50.5 3.7 25 48-72 11-35 (204)
264 2rcn_A Probable GTPase ENGC; Y 96.6 0.0011 3.6E-08 55.6 3.4 25 50-74 216-240 (358)
265 1knq_A Gluconate kinase; ALFA/ 96.6 0.0017 5.7E-08 48.4 4.1 23 49-71 8-30 (175)
266 3lw7_A Adenylate kinase relate 96.6 0.0012 4E-08 48.9 3.3 20 50-69 2-21 (179)
267 4eun_A Thermoresistant glucoki 96.6 0.0012 4.1E-08 50.5 3.3 24 48-71 28-51 (200)
268 1b0u_A Histidine permease; ABC 96.6 0.0011 3.6E-08 53.3 3.1 24 50-73 33-56 (262)
269 1sgw_A Putative ABC transporte 96.6 0.0011 3.8E-08 51.5 3.1 24 50-73 36-59 (214)
270 3gfo_A Cobalt import ATP-bindi 96.6 0.0011 3.6E-08 53.6 3.1 24 50-73 35-58 (275)
271 1cke_A CK, MSSA, protein (cyti 96.6 0.0015 5.1E-08 50.8 3.8 23 49-71 5-27 (227)
272 2cbz_A Multidrug resistance-as 96.6 0.0012 4.1E-08 52.1 3.2 24 50-73 32-55 (237)
273 2bbw_A Adenylate kinase 4, AK4 96.6 0.0014 4.8E-08 51.9 3.6 22 49-70 27-48 (246)
274 3kb2_A SPBC2 prophage-derived 96.6 0.0013 4.6E-08 48.6 3.3 21 51-71 3-23 (173)
275 1ukz_A Uridylate kinase; trans 96.6 0.0021 7.1E-08 49.1 4.4 24 48-71 14-37 (203)
276 2qt1_A Nicotinamide riboside k 96.6 0.0019 6.4E-08 49.6 4.1 27 46-72 18-44 (207)
277 1ly1_A Polynucleotide kinase; 96.6 0.0014 4.7E-08 48.9 3.2 22 50-71 3-24 (181)
278 1mv5_A LMRA, multidrug resista 96.6 0.0013 4.5E-08 52.1 3.3 25 49-73 28-52 (243)
279 2ff7_A Alpha-hemolysin translo 96.6 0.0013 4.4E-08 52.3 3.2 24 50-73 36-59 (247)
280 4g1u_C Hemin import ATP-bindin 96.6 0.0012 4E-08 53.1 3.0 24 50-73 38-61 (266)
281 1g6h_A High-affinity branched- 96.6 0.0012 4.1E-08 52.8 3.0 24 50-73 34-57 (257)
282 2olj_A Amino acid ABC transpor 96.5 0.0013 4.3E-08 52.8 3.1 24 50-73 51-74 (263)
283 2pze_A Cystic fibrosis transme 96.5 0.0014 4.7E-08 51.5 3.3 24 50-73 35-58 (229)
284 2v9p_A Replication protein E1; 96.5 0.0014 4.9E-08 53.6 3.4 25 48-72 125-149 (305)
285 2d2e_A SUFC protein; ABC-ATPas 96.5 0.0014 4.8E-08 52.1 3.2 23 50-72 30-52 (250)
286 1ji0_A ABC transporter; ATP bi 96.5 0.0013 4.5E-08 52.0 3.0 24 50-73 33-56 (240)
287 3iij_A Coilin-interacting nucl 96.5 0.002 6.7E-08 48.2 3.9 24 48-71 10-33 (180)
288 3fb4_A Adenylate kinase; psych 96.5 0.0016 5.3E-08 50.3 3.4 22 50-71 1-22 (216)
289 3ec2_A DNA replication protein 96.5 0.0014 4.7E-08 49.2 2.9 24 49-72 38-61 (180)
290 1zd8_A GTP:AMP phosphotransfer 96.5 0.0015 5.1E-08 51.0 3.2 24 48-71 6-29 (227)
291 3t61_A Gluconokinase; PSI-biol 96.5 0.0019 6.3E-08 49.4 3.7 23 49-71 18-40 (202)
292 1vpl_A ABC transporter, ATP-bi 96.5 0.0014 4.8E-08 52.3 3.1 24 50-73 42-65 (256)
293 3dl0_A Adenylate kinase; phosp 96.5 0.0016 5.6E-08 50.2 3.4 22 50-71 1-22 (216)
294 2zu0_C Probable ATP-dependent 96.5 0.0015 5.3E-08 52.4 3.3 23 50-72 47-69 (267)
295 2qi9_C Vitamin B12 import ATP- 96.5 0.0016 5.3E-08 51.8 3.3 24 50-73 27-50 (249)
296 2ghi_A Transport protein; mult 96.5 0.0015 5.2E-08 52.2 3.2 24 49-72 46-69 (260)
297 1np6_A Molybdopterin-guanine d 96.5 0.0017 5.9E-08 48.6 3.3 24 49-72 6-29 (174)
298 2if2_A Dephospho-COA kinase; a 96.5 0.0016 5.5E-08 49.8 3.2 22 50-71 2-23 (204)
299 2ihy_A ABC transporter, ATP-bi 96.5 0.0016 5.5E-08 52.7 3.3 24 50-73 48-71 (279)
300 3b85_A Phosphate starvation-in 96.5 0.0012 4.2E-08 51.0 2.4 22 51-72 24-45 (208)
301 2eyu_A Twitching motility prot 96.5 0.0016 5.5E-08 52.2 3.2 25 48-72 24-48 (261)
302 2ixe_A Antigen peptide transpo 96.5 0.0016 5.6E-08 52.4 3.2 24 50-73 46-69 (271)
303 3aez_A Pantothenate kinase; tr 96.4 0.002 6.9E-08 53.0 3.8 25 47-71 88-112 (312)
304 2jeo_A Uridine-cytidine kinase 96.4 0.0021 7.2E-08 50.8 3.8 24 48-71 24-47 (245)
305 3vaa_A Shikimate kinase, SK; s 96.4 0.002 6.7E-08 49.2 3.5 23 49-71 25-47 (199)
306 2nq2_C Hypothetical ABC transp 96.4 0.0016 5.6E-08 51.8 3.0 24 50-73 32-55 (253)
307 1y63_A LMAJ004144AAA protein; 96.4 0.0025 8.7E-08 48.0 3.9 24 49-72 10-33 (184)
308 2yz2_A Putative ABC transporte 96.4 0.0017 5.9E-08 52.1 3.0 24 50-73 34-57 (266)
309 2ehv_A Hypothetical protein PH 96.4 0.0019 6.6E-08 50.8 3.2 23 48-70 29-51 (251)
310 2rhm_A Putative kinase; P-loop 96.4 0.0024 8.2E-08 48.1 3.7 23 49-71 5-27 (193)
311 1jjv_A Dephospho-COA kinase; P 96.4 0.0021 7.3E-08 49.2 3.4 22 50-71 3-24 (206)
312 3uie_A Adenylyl-sulfate kinase 96.4 0.0024 8.4E-08 48.7 3.7 25 48-72 24-48 (200)
313 2jaq_A Deoxyguanosine kinase; 96.4 0.0022 7.6E-08 48.8 3.5 21 51-71 2-22 (205)
314 1qhx_A CPT, protein (chloramph 96.4 0.002 6.7E-08 48.0 3.1 23 50-72 4-26 (178)
315 3sr0_A Adenylate kinase; phosp 96.4 0.0022 7.5E-08 49.4 3.4 22 50-71 1-22 (206)
316 3cm0_A Adenylate kinase; ATP-b 96.4 0.0024 8.1E-08 48.0 3.5 23 49-71 4-26 (186)
317 1u0l_A Probable GTPase ENGC; p 96.4 0.0017 5.8E-08 53.1 2.9 24 50-73 170-193 (301)
318 1nn5_A Similar to deoxythymidy 96.4 0.0023 7.7E-08 49.2 3.4 24 48-71 8-31 (215)
319 1aky_A Adenylate kinase; ATP:A 96.4 0.0025 8.4E-08 49.4 3.6 23 49-71 4-26 (220)
320 1kht_A Adenylate kinase; phosp 96.4 0.0024 8.2E-08 48.0 3.5 22 50-71 4-25 (192)
321 4a74_A DNA repair and recombin 96.3 0.0019 6.5E-08 50.2 3.0 26 48-73 24-49 (231)
322 3lnc_A Guanylate kinase, GMP k 96.3 0.0012 4.2E-08 51.6 1.8 24 49-72 27-51 (231)
323 3tlx_A Adenylate kinase 2; str 96.3 0.0027 9.3E-08 50.2 3.8 24 48-71 28-51 (243)
324 2pjz_A Hypothetical protein ST 96.3 0.0022 7.4E-08 51.4 3.3 24 50-73 31-54 (263)
325 3trf_A Shikimate kinase, SK; a 96.3 0.0025 8.5E-08 47.8 3.5 23 49-71 5-27 (185)
326 2yv5_A YJEQ protein; hydrolase 96.3 0.0021 7.1E-08 52.6 3.2 22 49-70 165-186 (302)
327 2f1r_A Molybdopterin-guanine d 96.3 0.0011 3.7E-08 49.6 1.4 22 51-72 4-25 (171)
328 1nks_A Adenylate kinase; therm 96.3 0.0022 7.5E-08 48.3 3.1 22 50-71 2-23 (194)
329 1ak2_A Adenylate kinase isoenz 96.3 0.0029 9.9E-08 49.6 3.8 24 48-71 15-38 (233)
330 3tqc_A Pantothenate kinase; bi 96.3 0.0032 1.1E-07 51.9 4.1 25 47-71 90-114 (321)
331 3co5_A Putative two-component 96.3 0.0066 2.3E-07 43.7 5.4 23 50-72 28-50 (143)
332 2v54_A DTMP kinase, thymidylat 96.3 0.0034 1.2E-07 47.8 3.9 24 49-72 4-27 (204)
333 2wwf_A Thymidilate kinase, put 96.3 0.0035 1.2E-07 48.0 4.0 24 48-71 9-32 (212)
334 2plr_A DTMP kinase, probable t 96.2 0.003 1E-07 48.3 3.6 23 49-71 4-26 (213)
335 1odf_A YGR205W, hypothetical 3 96.2 0.0037 1.3E-07 50.8 4.2 24 48-71 30-53 (290)
336 2vp4_A Deoxynucleoside kinase; 96.2 0.003 1E-07 49.4 3.5 27 46-72 17-43 (230)
337 3nh6_A ATP-binding cassette SU 96.2 0.0017 5.8E-08 53.2 2.1 26 48-73 79-104 (306)
338 1e4v_A Adenylate kinase; trans 96.2 0.0026 8.9E-08 49.1 3.1 22 50-71 1-22 (214)
339 1tev_A UMP-CMP kinase; ploop, 96.2 0.0031 1.1E-07 47.5 3.5 23 49-71 3-25 (196)
340 2x8a_A Nuclear valosin-contain 96.2 0.0027 9.1E-08 51.2 3.2 21 52-72 47-67 (274)
341 1lw7_A Transcriptional regulat 96.2 0.0023 7.9E-08 53.8 3.0 25 49-73 170-194 (365)
342 1zak_A Adenylate kinase; ATP:A 96.2 0.0028 9.5E-08 49.2 3.2 23 49-71 5-27 (222)
343 1via_A Shikimate kinase; struc 96.2 0.003 1E-07 47.0 3.2 21 51-71 6-26 (175)
344 3fvq_A Fe(3+) IONS import ATP- 96.2 0.0025 8.6E-08 53.3 2.9 24 50-73 31-54 (359)
345 2bbs_A Cystic fibrosis transme 96.2 0.0025 8.7E-08 51.8 2.9 24 50-73 65-88 (290)
346 2c95_A Adenylate kinase 1; tra 96.2 0.0034 1.2E-07 47.4 3.5 24 48-71 8-31 (196)
347 1rz3_A Hypothetical protein rb 96.2 0.0039 1.3E-07 47.6 3.8 24 48-71 21-44 (201)
348 3tui_C Methionine import ATP-b 96.1 0.003 1E-07 53.0 3.3 24 50-73 55-78 (366)
349 2pt5_A Shikimate kinase, SK; a 96.1 0.0035 1.2E-07 46.2 3.3 21 51-71 2-22 (168)
350 1z47_A CYSA, putative ABC-tran 96.1 0.003 1E-07 52.8 3.2 24 50-73 42-65 (355)
351 1sq5_A Pantothenate kinase; P- 96.1 0.0038 1.3E-07 51.2 3.8 24 48-71 79-102 (308)
352 1ixz_A ATP-dependent metallopr 96.1 0.0033 1.1E-07 49.8 3.3 21 52-72 52-72 (254)
353 2yyz_A Sugar ABC transporter, 96.1 0.0032 1.1E-07 52.8 3.2 24 50-73 30-53 (359)
354 1gvn_B Zeta; postsegregational 96.1 0.0038 1.3E-07 50.7 3.6 24 48-71 32-55 (287)
355 4e22_A Cytidylate kinase; P-lo 96.1 0.0046 1.6E-07 49.1 4.0 23 48-70 26-48 (252)
356 2it1_A 362AA long hypothetical 96.1 0.0033 1.1E-07 52.7 3.3 24 50-73 30-53 (362)
357 3rlf_A Maltose/maltodextrin im 96.1 0.0033 1.1E-07 53.0 3.3 24 50-73 30-53 (381)
358 2kjq_A DNAA-related protein; s 96.1 0.0022 7.4E-08 46.8 1.9 25 49-73 36-60 (149)
359 1jbk_A CLPB protein; beta barr 96.1 0.0041 1.4E-07 46.4 3.5 23 50-72 44-66 (195)
360 2yvu_A Probable adenylyl-sulfa 96.0 0.0051 1.7E-07 46.2 3.9 24 48-71 12-35 (186)
361 1xjc_A MOBB protein homolog; s 96.0 0.0047 1.6E-07 46.0 3.6 22 50-71 5-26 (169)
362 1uf9_A TT1252 protein; P-loop, 96.0 0.0042 1.4E-07 47.2 3.5 25 48-72 7-31 (203)
363 3jvv_A Twitching mobility prot 96.0 0.0035 1.2E-07 52.5 3.2 21 51-71 125-145 (356)
364 1rj9_A FTSY, signal recognitio 96.0 0.006 2E-07 50.0 4.5 24 48-71 101-124 (304)
365 1v43_A Sugar-binding transport 96.0 0.0036 1.2E-07 52.7 3.3 24 50-73 38-61 (372)
366 1g29_1 MALK, maltose transport 96.0 0.0036 1.2E-07 52.8 3.2 23 51-73 31-53 (372)
367 2xb4_A Adenylate kinase; ATP-b 96.0 0.0041 1.4E-07 48.4 3.4 21 51-71 2-22 (223)
368 3be4_A Adenylate kinase; malar 96.0 0.0036 1.2E-07 48.4 2.9 23 49-71 5-27 (217)
369 3b9q_A Chloroplast SRP recepto 96.0 0.0041 1.4E-07 50.9 3.3 24 48-71 99-122 (302)
370 2pbr_A DTMP kinase, thymidylat 96.0 0.0047 1.6E-07 46.5 3.4 21 51-71 2-22 (195)
371 1vht_A Dephospho-COA kinase; s 96.0 0.0051 1.7E-07 47.5 3.6 23 49-71 4-26 (218)
372 1in4_A RUVB, holliday junction 95.9 0.0042 1.4E-07 51.5 3.3 23 50-72 52-74 (334)
373 2z0h_A DTMP kinase, thymidylat 95.9 0.0048 1.7E-07 46.6 3.4 22 51-72 2-23 (197)
374 2bwj_A Adenylate kinase 5; pho 95.9 0.0045 1.6E-07 46.8 3.2 23 49-71 12-34 (199)
375 2p5t_B PEZT; postsegregational 95.9 0.0044 1.5E-07 49.2 3.2 24 48-71 31-54 (253)
376 2ze6_A Isopentenyl transferase 95.9 0.0046 1.6E-07 49.2 3.3 21 51-71 3-23 (253)
377 3d31_A Sulfate/molybdate ABC t 95.9 0.003 1E-07 52.7 2.2 24 50-73 27-50 (348)
378 1gtv_A TMK, thymidylate kinase 95.9 0.0018 6.1E-08 49.8 0.8 21 51-71 2-22 (214)
379 2iyv_A Shikimate kinase, SK; t 95.9 0.0048 1.7E-07 46.2 3.2 22 50-71 3-24 (184)
380 3e70_C DPA, signal recognition 95.9 0.0047 1.6E-07 51.1 3.3 24 48-71 128-151 (328)
381 1iy2_A ATP-dependent metallopr 95.9 0.0048 1.7E-07 49.6 3.3 21 52-72 76-96 (278)
382 2ewv_A Twitching motility prot 95.9 0.0048 1.6E-07 52.0 3.4 23 49-71 136-158 (372)
383 1qf9_A UMP/CMP kinase, protein 95.9 0.0063 2.1E-07 45.7 3.7 22 50-71 7-28 (194)
384 2pt7_A CAG-ALFA; ATPase, prote 95.9 0.004 1.4E-07 51.6 2.8 23 51-73 173-195 (330)
385 2gza_A Type IV secretion syste 95.9 0.004 1.4E-07 52.3 2.8 25 49-73 175-199 (361)
386 1e6c_A Shikimate kinase; phosp 95.9 0.005 1.7E-07 45.5 3.1 22 50-71 3-24 (173)
387 3a4m_A L-seryl-tRNA(SEC) kinas 95.8 0.0058 2E-07 48.7 3.6 23 49-71 4-26 (260)
388 2w0m_A SSO2452; RECA, SSPF, un 95.8 0.0052 1.8E-07 47.6 3.2 22 50-71 24-45 (235)
389 2pez_A Bifunctional 3'-phospho 95.8 0.0066 2.3E-07 45.3 3.7 23 49-71 5-27 (179)
390 3r20_A Cytidylate kinase; stru 95.8 0.0063 2.2E-07 47.8 3.5 24 48-71 8-31 (233)
391 3gd7_A Fusion complex of cysti 95.8 0.0047 1.6E-07 52.3 2.9 24 49-72 47-70 (390)
392 3kta_A Chromosome segregation 95.7 0.0056 1.9E-07 45.7 3.0 21 51-71 28-48 (182)
393 1oxx_K GLCV, glucose, ABC tran 95.7 0.003 1E-07 52.9 1.5 24 50-73 32-55 (353)
394 2vli_A Antibiotic resistance p 95.7 0.004 1.4E-07 46.5 2.1 23 49-71 5-27 (183)
395 2p65_A Hypothetical protein PF 95.7 0.0051 1.7E-07 45.7 2.6 24 49-72 43-66 (187)
396 1p9r_A General secretion pathw 95.7 0.0058 2E-07 52.3 3.2 23 50-72 168-190 (418)
397 1lv7_A FTSH; alpha/beta domain 95.7 0.0064 2.2E-07 48.2 3.3 23 50-72 46-68 (257)
398 4eaq_A DTMP kinase, thymidylat 95.7 0.0087 3E-07 46.8 3.9 25 48-72 25-49 (229)
399 1zuh_A Shikimate kinase; alpha 95.7 0.0073 2.5E-07 44.5 3.3 22 50-71 8-29 (168)
400 2og2_A Putative signal recogni 95.7 0.0065 2.2E-07 50.9 3.3 24 48-71 156-179 (359)
401 1uj2_A Uridine-cytidine kinase 95.7 0.0072 2.5E-07 47.9 3.4 24 48-71 21-44 (252)
402 3bos_A Putative DNA replicatio 95.6 0.0076 2.6E-07 46.8 3.4 25 48-72 51-75 (242)
403 2obl_A ESCN; ATPase, hydrolase 95.6 0.0067 2.3E-07 50.6 3.2 26 48-73 70-95 (347)
404 2f6r_A COA synthase, bifunctio 95.6 0.0086 3E-07 48.4 3.8 25 47-71 73-97 (281)
405 2npi_A Protein CLP1; CLP1-PCF1 95.6 0.006 2E-07 52.9 2.9 24 48-71 137-160 (460)
406 2yhs_A FTSY, cell division pro 95.6 0.0071 2.4E-07 52.7 3.3 24 48-71 292-315 (503)
407 1cr0_A DNA primase/helicase; R 95.6 0.0065 2.2E-07 49.3 3.0 25 48-72 34-58 (296)
408 2cvh_A DNA repair and recombin 95.6 0.0078 2.7E-07 46.2 3.2 24 48-71 19-42 (220)
409 1n0w_A DNA repair protein RAD5 95.6 0.0079 2.7E-07 47.0 3.3 25 48-72 23-47 (243)
410 3n70_A Transport activator; si 95.6 0.0091 3.1E-07 43.0 3.4 25 49-73 24-48 (145)
411 2oap_1 GSPE-2, type II secreti 95.5 0.0065 2.2E-07 53.4 3.0 25 49-73 260-284 (511)
412 2w58_A DNAI, primosome compone 95.5 0.0088 3E-07 45.5 3.4 23 50-72 55-77 (202)
413 3nwj_A ATSK2; P loop, shikimat 95.5 0.008 2.7E-07 47.7 3.2 23 49-71 48-70 (250)
414 3syl_A Protein CBBX; photosynt 95.5 0.011 3.7E-07 48.1 4.1 24 48-71 66-89 (309)
415 1m7g_A Adenylylsulfate kinase; 95.5 0.011 3.7E-07 45.4 3.9 23 49-71 25-47 (211)
416 1tue_A Replication protein E1; 95.5 0.0074 2.5E-07 46.3 2.6 21 51-71 60-80 (212)
417 4ido_A Atlastin-1; GTPase, GTP 95.4 0.039 1.3E-06 47.5 7.3 96 47-142 65-192 (457)
418 1f2t_A RAD50 ABC-ATPase; DNA d 95.4 0.0093 3.2E-07 43.3 3.0 20 51-70 25-44 (149)
419 1nij_A Hypothetical protein YJ 95.4 0.0062 2.1E-07 50.2 2.1 23 50-72 5-27 (318)
420 2grj_A Dephospho-COA kinase; T 95.4 0.01 3.5E-07 45.1 3.2 25 48-72 11-35 (192)
421 3t15_A Ribulose bisphosphate c 95.3 0.013 4.3E-07 47.7 3.9 25 48-72 35-59 (293)
422 3euj_A Chromosome partition pr 95.3 0.0099 3.4E-07 51.7 3.3 22 50-71 30-51 (483)
423 1svm_A Large T antigen; AAA+ f 95.3 0.01 3.4E-07 50.1 3.2 24 48-71 168-191 (377)
424 1yqt_A RNAse L inhibitor; ATP- 95.3 0.01 3.5E-07 52.5 3.5 27 47-73 45-71 (538)
425 3h4m_A Proteasome-activating n 95.3 0.013 4.5E-07 47.1 3.7 24 49-72 51-74 (285)
426 1njg_A DNA polymerase III subu 95.3 0.011 3.8E-07 45.7 3.2 21 51-71 47-67 (250)
427 2qz4_A Paraplegin; AAA+, SPG7, 95.3 0.014 4.8E-07 46.1 3.8 24 49-72 39-62 (262)
428 3b9p_A CG5977-PA, isoform A; A 95.2 0.013 4.5E-07 47.4 3.7 24 49-72 54-77 (297)
429 2dpy_A FLII, flagellum-specifi 95.2 0.01 3.5E-07 51.1 3.2 26 48-73 156-181 (438)
430 2chg_A Replication factor C sm 95.2 0.012 4E-07 44.9 3.2 22 51-72 40-61 (226)
431 1ltq_A Polynucleotide kinase; 95.2 0.011 3.9E-07 47.9 3.2 22 50-71 3-24 (301)
432 3lv8_A DTMP kinase, thymidylat 95.2 0.012 4.2E-07 46.2 3.3 24 48-71 26-49 (236)
433 1q3t_A Cytidylate kinase; nucl 95.1 0.016 5.4E-07 45.4 3.8 24 48-71 15-38 (236)
434 3cf0_A Transitional endoplasmi 95.1 0.012 4.1E-07 47.9 3.2 24 49-72 49-72 (301)
435 1p5z_B DCK, deoxycytidine kina 95.1 0.0091 3.1E-07 47.6 2.3 26 47-72 22-47 (263)
436 3b60_A Lipid A export ATP-bind 95.1 0.011 3.7E-07 52.9 3.0 26 48-73 368-393 (582)
437 3j16_B RLI1P; ribosome recycli 95.0 0.013 4.4E-07 52.7 3.3 26 48-73 102-127 (608)
438 3b5x_A Lipid A export ATP-bind 95.0 0.012 4.3E-07 52.5 3.2 26 48-73 368-393 (582)
439 1l8q_A Chromosomal replication 95.0 0.014 4.6E-07 48.0 3.2 23 50-72 38-60 (324)
440 1nlf_A Regulatory protein REPA 95.0 0.013 4.4E-07 47.2 3.0 24 48-71 29-52 (279)
441 4fcw_A Chaperone protein CLPB; 95.0 0.019 6.6E-07 46.6 4.0 24 49-72 47-70 (311)
442 1d2n_A N-ethylmaleimide-sensit 94.9 0.02 7E-07 45.7 4.0 26 47-72 62-87 (272)
443 3zvl_A Bifunctional polynucleo 94.9 0.023 7.8E-07 48.6 4.5 25 48-72 257-281 (416)
444 3ozx_A RNAse L inhibitor; ATP 94.9 0.021 7.1E-07 50.6 4.3 28 46-73 22-49 (538)
445 3ake_A Cytidylate kinase; CMP 94.9 0.018 6E-07 43.8 3.4 21 51-71 4-24 (208)
446 1yqt_A RNAse L inhibitor; ATP- 94.9 0.016 5.6E-07 51.2 3.5 24 50-73 313-336 (538)
447 3bk7_A ABC transporter ATP-bin 94.8 0.015 5.3E-07 52.2 3.3 27 47-73 115-141 (607)
448 3qf7_A RAD50; ABC-ATPase, ATPa 94.8 0.017 5.7E-07 48.6 3.2 19 52-70 26-44 (365)
449 3gmt_A Adenylate kinase; ssgci 94.8 0.02 6.8E-07 44.7 3.4 23 49-71 8-30 (230)
450 3ozx_A RNAse L inhibitor; ATP 94.8 0.015 5.3E-07 51.4 3.1 23 51-73 296-318 (538)
451 2qby_A CDC6 homolog 1, cell di 94.7 0.016 5.5E-07 48.4 3.0 24 49-72 45-68 (386)
452 3bk7_A ABC transporter ATP-bin 94.7 0.018 6.2E-07 51.7 3.5 23 51-73 384-406 (607)
453 1ofh_A ATP-dependent HSL prote 94.7 0.021 7.2E-07 46.3 3.6 22 50-71 51-72 (310)
454 2dr3_A UPF0273 protein PH0284; 94.7 0.017 5.9E-07 45.1 3.0 22 50-71 24-45 (247)
455 1sxj_E Activator 1 40 kDa subu 94.7 0.015 5.2E-07 48.2 2.7 21 52-72 39-59 (354)
456 2px0_A Flagellar biosynthesis 94.7 0.017 5.8E-07 47.0 3.0 22 49-70 105-126 (296)
457 2yl4_A ATP-binding cassette SU 94.7 0.011 3.9E-07 53.0 2.0 25 49-73 370-394 (595)
458 4b4t_K 26S protease regulatory 94.7 0.019 6.4E-07 49.3 3.3 23 50-72 207-229 (428)
459 4a82_A Cystic fibrosis transme 94.7 0.011 3.7E-07 52.9 1.8 26 48-73 366-391 (578)
460 1sxj_C Activator 1 40 kDa subu 94.7 0.019 6.4E-07 47.6 3.2 22 51-72 48-69 (340)
461 3qf4_B Uncharacterized ABC tra 94.7 0.013 4.3E-07 52.7 2.2 26 48-73 380-405 (598)
462 3eie_A Vacuolar protein sortin 94.6 0.027 9.3E-07 46.3 4.1 24 49-72 51-74 (322)
463 1xwi_A SKD1 protein; VPS4B, AA 94.6 0.028 9.4E-07 46.3 4.1 24 49-72 45-68 (322)
464 1fnn_A CDC6P, cell division co 94.6 0.021 7.2E-07 47.8 3.5 22 51-72 46-67 (389)
465 3d3q_A TRNA delta(2)-isopenten 94.6 0.023 7.8E-07 47.1 3.6 22 50-71 8-29 (340)
466 2qmh_A HPR kinase/phosphorylas 94.6 0.02 6.8E-07 43.7 2.9 26 48-73 33-58 (205)
467 4b4t_M 26S protease regulatory 94.6 0.028 9.6E-07 48.2 4.1 25 48-72 214-238 (434)
468 3v9p_A DTMP kinase, thymidylat 94.6 0.018 6E-07 45.0 2.6 25 47-71 23-47 (227)
469 3foz_A TRNA delta(2)-isopenten 94.6 0.028 9.6E-07 45.9 3.9 23 49-71 10-32 (316)
470 4b4t_L 26S protease subunit RP 94.6 0.021 7.2E-07 49.0 3.3 25 48-72 214-238 (437)
471 1vma_A Cell division protein F 94.6 0.022 7.5E-07 46.6 3.3 23 49-71 104-126 (306)
472 1pzn_A RAD51, DNA repair and r 94.5 0.019 6.5E-07 47.9 3.0 27 47-73 129-155 (349)
473 1a7j_A Phosphoribulokinase; tr 94.5 0.011 3.8E-07 48.0 1.5 24 48-71 4-27 (290)
474 3qf4_A ABC transporter, ATP-bi 94.5 0.014 4.9E-07 52.2 2.3 25 48-72 368-392 (587)
475 3crm_A TRNA delta(2)-isopenten 94.5 0.027 9.2E-07 46.4 3.7 22 50-71 6-27 (323)
476 3j16_B RLI1P; ribosome recycli 94.5 0.021 7.2E-07 51.2 3.3 23 51-73 380-402 (608)
477 4b4t_J 26S protease regulatory 94.4 0.024 8.1E-07 48.1 3.3 25 48-72 181-205 (405)
478 1sxj_D Activator 1 41 kDa subu 94.4 0.024 8.4E-07 46.8 3.2 22 51-72 60-81 (353)
479 2r62_A Cell division protease 94.4 0.012 3.9E-07 47.0 1.2 21 51-71 46-66 (268)
480 3qks_A DNA double-strand break 94.4 0.027 9.4E-07 43.0 3.2 20 51-70 25-44 (203)
481 2ocp_A DGK, deoxyguanosine kin 94.3 0.029 1E-06 43.9 3.3 23 50-72 3-25 (241)
482 2v1u_A Cell division control p 94.2 0.023 7.8E-07 47.5 2.8 24 49-72 44-67 (387)
483 1qhl_A Protein (cell division 94.2 0.0044 1.5E-07 48.5 -1.5 22 51-72 29-50 (227)
484 3uk6_A RUVB-like 2; hexameric 94.2 0.024 8.3E-07 47.2 3.0 23 50-72 71-93 (368)
485 2iw3_A Elongation factor 3A; a 94.2 0.03 1E-06 52.9 3.8 25 50-74 462-486 (986)
486 2qgz_A Helicase loader, putati 94.2 0.031 1.1E-06 45.7 3.4 24 49-72 152-175 (308)
487 2qp9_X Vacuolar protein sortin 94.2 0.028 9.5E-07 47.0 3.2 24 49-72 84-107 (355)
488 2ga8_A Hypothetical 39.9 kDa p 94.2 0.032 1.1E-06 46.5 3.5 23 49-71 24-46 (359)
489 2h92_A Cytidylate kinase; ross 94.2 0.031 1.1E-06 42.9 3.3 22 50-71 4-25 (219)
490 1um8_A ATP-dependent CLP prote 94.2 0.033 1.1E-06 46.8 3.6 24 49-72 72-95 (376)
491 2z4s_A Chromosomal replication 94.1 0.028 9.6E-07 48.4 3.2 23 50-72 131-153 (440)
492 3exa_A TRNA delta(2)-isopenten 94.1 0.031 1.1E-06 45.8 3.2 23 50-72 4-26 (322)
493 3pxg_A Negative regulator of g 94.1 0.026 8.8E-07 49.1 2.9 25 48-72 200-224 (468)
494 2dhr_A FTSH; AAA+ protein, hex 94.1 0.029 9.8E-07 49.1 3.2 22 51-72 66-87 (499)
495 3m6a_A ATP-dependent protease 94.1 0.029 9.8E-07 49.7 3.2 23 49-71 108-130 (543)
496 4edh_A DTMP kinase, thymidylat 94.1 0.033 1.1E-06 43.0 3.2 23 49-71 6-28 (213)
497 3pfi_A Holliday junction ATP-d 94.1 0.035 1.2E-06 45.8 3.5 23 50-72 56-78 (338)
498 2bjv_A PSP operon transcriptio 94.0 0.033 1.1E-06 44.2 3.3 24 50-73 30-53 (265)
499 3hws_A ATP-dependent CLP prote 94.0 0.046 1.6E-06 45.7 4.3 24 48-71 50-73 (363)
500 4b4t_I 26S protease regulatory 94.0 0.032 1.1E-06 47.7 3.2 25 48-72 215-239 (437)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=5.2e-39 Score=254.22 Aligned_cols=166 Identities=30% Similarity=0.466 Sum_probs=141.8
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCE
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADA 124 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 124 (253)
....+||+|+|++|||||||+++|+.+.|...+.+|.+ ++....+.+ ++..+.++||||+|+++|..++..+++++++
T Consensus 10 P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~-~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~ 88 (216)
T 4dkx_A 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYL-EDRTIRLQLWDTAGLERFRSLIPSYIRDSAA 88 (216)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEEC-SSCEEEEEEECCSCTTTCGGGHHHHHTTCSE
T ss_pred CCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEe-cceEEEEEEEECCCchhhhhHHHHHhccccE
Confidence 34679999999999999999999999999888888877 677777777 8889999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHH
Q psy549 125 FVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVF 203 (253)
Q Consensus 125 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 203 (253)
+++|||++++.+|+.+..|+..+.....+++|++||+||+|+.+. .+..+.++.+++ ..+++|++|||++|.||+++|
T Consensus 89 ~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~-~~~~~~~e~SAktg~nV~e~F 167 (216)
T 4dkx_A 89 AVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAK-ELNVMFIETSAKAGYNVKQLF 167 (216)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHH-HHTCEEEEEBTTTTBSHHHHH
T ss_pred EEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHH-HhCCeeEEEeCCCCcCHHHHH
Confidence 999999999999999999999998887788999999999999875 788889999998 667899999999999999999
Q ss_pred HHHHHHHHHh
Q psy549 204 KELLAQAKVQ 213 (253)
Q Consensus 204 ~~l~~~~~~~ 213 (253)
+.|++.+...
T Consensus 168 ~~i~~~i~~~ 177 (216)
T 4dkx_A 168 RRVAAALPGM 177 (216)
T ss_dssp HHHHHHC---
T ss_pred HHHHHHHHhh
Confidence 9999988654
No 2
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=100.00 E-value=4.8e-32 Score=212.55 Aligned_cols=166 Identities=33% Similarity=0.592 Sum_probs=146.0
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEE
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAF 125 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 125 (253)
....++|+|+|++|||||||+++|.++.+...+.+|+...+...+.+ ++..+.+.+||+||++++..++..+++.+|++
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 89 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVL-DGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF 89 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEE-TTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEE-CCEEEEEEEEcCCChhhhHHHHHHHHhhCCEE
Confidence 34679999999999999999999999998888888888777777777 77788999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHH
Q psy549 126 VLVYAVDDASTWDVVKDLREQIVNKRG-LMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVF 203 (253)
Q Consensus 126 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 203 (253)
++|||+++..+|..+..|+..+..... .++|+++|+||+|+... .+..+.+..+.. ..+++++++||++|.|++++|
T Consensus 90 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~g~gi~~l~ 168 (206)
T 2bov_A 90 LCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAE-QWNVNYVETSAKTRANVDKVF 168 (206)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH-HHTCEEEEECTTTCTTHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHH-HhCCeEEEEeCCCCCCHHHHH
Confidence 999999999999999999988887543 47999999999999765 566666777776 456799999999999999999
Q ss_pred HHHHHHHHHh
Q psy549 204 KELLAQAKVQ 213 (253)
Q Consensus 204 ~~l~~~~~~~ 213 (253)
++|++.+...
T Consensus 169 ~~l~~~i~~~ 178 (206)
T 2bov_A 169 FDLMREIRAR 178 (206)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 9999998664
No 3
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=100.00 E-value=2.4e-31 Score=208.93 Aligned_cols=170 Identities=26% Similarity=0.392 Sum_probs=147.1
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCE
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADA 124 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 124 (253)
....++|+|+|++|||||||+++|.+..+...+.++.. +.....+.+ ++..+.+.+||+||++++...+..+++.+|+
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (206)
T 2bcg_Y 5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVEL-DGKTVKLQIWDTAGQERFRTITSSYYRGSHG 83 (206)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEE-TTEEEEEEEECCTTTTTTTCCCGGGGTTCSE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEE-CCEEEEEEEEeCCChHHHHHHHHHhccCCCE
Confidence 34578999999999999999999999988766655554 555566777 7778899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHH
Q psy549 125 FVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVF 203 (253)
Q Consensus 125 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 203 (253)
+|+|||++++.++..+..|+..+......++|+++|+||+|+... .+..+.+..++. ..+++++++||++|.|++++|
T Consensus 84 vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~g~gi~~l~ 162 (206)
T 2bcg_Y 84 IIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFAD-ANKMPFLETSALDSTNVEDAF 162 (206)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHH-HTTCCEEECCTTTCTTHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHH-HcCCeEEEEeCCCCCCHHHHH
Confidence 999999999999999999999888876678999999999999765 566677777776 567899999999999999999
Q ss_pred HHHHHHHHHhcccC
Q psy549 204 KELLAQAKVQYNLS 217 (253)
Q Consensus 204 ~~l~~~~~~~~~~~ 217 (253)
++|.+.+.+.....
T Consensus 163 ~~l~~~i~~~~~~~ 176 (206)
T 2bcg_Y 163 LTMARQIKESMSQQ 176 (206)
T ss_dssp HHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHhhc
Confidence 99999998775544
No 4
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=9.2e-32 Score=209.85 Aligned_cols=166 Identities=39% Similarity=0.647 Sum_probs=141.6
Q ss_pred CCCCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCC
Q psy549 44 GLQKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTAD 123 (253)
Q Consensus 44 ~~~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 123 (253)
+.....++|+|+|++|||||||+++|.++.+...+.++....+...+.+ ++..+.+.+||+||++++...+..+++.+|
T Consensus 3 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 81 (199)
T 2gf0_A 3 PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISC-DKSVCTLQITDTTGSHQFPAMQRLSISKGH 81 (199)
T ss_dssp --CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEE-TTEEEEEEEEECCGGGSCHHHHHHHHHHCS
T ss_pred ccCCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEE-CCEEEEEEEEeCCChHHhHHHHHHhhccCC
Confidence 3455679999999999999999999999888766666766666666666 777889999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcC--CCCCEEEEEecCCCCCccccHHHHHHHHHhcCCCcEEEeccCCCCCHHH
Q psy549 124 AFVLVYAVDDASTWDVVKDLREQIVNKRG--LMVPIVVVGNKCELEFKDVRREIAETIALYDWQCGFVECSAKENYNIVQ 201 (253)
Q Consensus 124 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 201 (253)
++++|||++++.++..+..|+..+..... .++|+++|+||+|+....+..+.+..++. .++++++++||++|.|+++
T Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~ 160 (199)
T 2gf0_A 82 AFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQ-EWKCAFMETSAKMNYNVKE 160 (199)
T ss_dssp EEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHH-HHTCEEEECBTTTTBSHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHH-HhCCeEEEEecCCCCCHHH
Confidence 99999999999999988888877766432 46899999999999877677777777776 5678999999999999999
Q ss_pred HHHHHHHHHH
Q psy549 202 VFKELLAQAK 211 (253)
Q Consensus 202 l~~~l~~~~~ 211 (253)
+|++|++.+.
T Consensus 161 l~~~l~~~~~ 170 (199)
T 2gf0_A 161 LFQELLTLET 170 (199)
T ss_dssp HHHHHHHHCS
T ss_pred HHHHHHHHHh
Confidence 9999998773
No 5
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=100.00 E-value=3.4e-31 Score=204.04 Aligned_cols=167 Identities=30% Similarity=0.502 Sum_probs=146.7
Q ss_pred CCCCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCC
Q psy549 44 GLQKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTAD 123 (253)
Q Consensus 44 ~~~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 123 (253)
......+||+|+|++|||||||+++|+++.+...+.+++...+...+.+ ++..+.+.+||+||++++...+..+++.+|
T Consensus 13 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 91 (183)
T 3kkq_A 13 SENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEI-DNQWAILDVLDTAGQEEFSAMREQYMRTGD 91 (183)
T ss_dssp -CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEE-TTEEEEEEEEECCSCGGGCSSHHHHHHHCS
T ss_pred ccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEe-CCcEEEEEEEECCCchhhHHHHHHHHhcCC
Confidence 3456789999999999999999999999988888888887777777777 788889999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHh-cCCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccC-CCCCHH
Q psy549 124 AFVLVYAVDDASTWDVVKDLREQIVNK-RGLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAK-ENYNIV 200 (253)
Q Consensus 124 ~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~~i~ 200 (253)
++++|||++++.+|..+..|+..+... ...++|+++|+||+|+.+. .+..+.++.++. ..+++++++||+ ++.|++
T Consensus 92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~-~~~~~~~~~Sa~~~~~~v~ 170 (183)
T 3kkq_A 92 GFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMAT-KYNIPYIETSAKDPPLNVD 170 (183)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHH-HHTCCEEEEBCSSSCBSHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHH-HhCCeEEEeccCCCCCCHH
Confidence 999999999999999999999888763 4467999999999999764 677777888887 456899999999 999999
Q ss_pred HHHHHHHHHHHH
Q psy549 201 QVFKELLAQAKV 212 (253)
Q Consensus 201 ~l~~~l~~~~~~ 212 (253)
++|++|++.+.+
T Consensus 171 ~l~~~l~~~i~~ 182 (183)
T 3kkq_A 171 KTFHDLVRVIRQ 182 (183)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 999999998854
No 6
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=4.9e-31 Score=203.81 Aligned_cols=166 Identities=20% Similarity=0.324 Sum_probs=139.9
Q ss_pred CCCCCCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhccc
Q psy549 42 GVGLQKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121 (253)
Q Consensus 42 ~~~~~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~ 121 (253)
...+....+||+|+|++|||||||+++|+++.+...+.+| ...+...+.+ ++..+.+.+|||+|++++. +++.
T Consensus 13 ~~~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t-~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~-----~~~~ 85 (184)
T 3ihw_A 13 NLYFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGRFKKEIVV-DGQSYLLLIRDEGGPPELQ-----FAAW 85 (184)
T ss_dssp ---CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTT-CEEEEEEEEE-TTEEEEEEEEECSSSCCHH-----HHHH
T ss_pred CCCCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCC-cceEEEEEEE-CCEEEEEEEEECCCChhhh-----eecC
Confidence 3345677899999999999999999999999987766666 4444577777 8888999999999998876 7788
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEecCCCCC---ccccHHHHHHHHHhcCCCcEEEeccCCCC
Q psy549 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRG-LMVPIVVVGNKCELEF---KDVRREIAETIALYDWQCGFVECSAKENY 197 (253)
Q Consensus 122 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 197 (253)
+|++++|||++++.+|+.+..|+..+..... .++|+++|+||+|+.. ..+..+.+..++.....+++++|||++|.
T Consensus 86 ~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 165 (184)
T 3ihw_A 86 VDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGL 165 (184)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTB
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCC
Confidence 9999999999999999999999998877543 5689999999999852 36777788888885555899999999999
Q ss_pred CHHHHHHHHHHHHHHhc
Q psy549 198 NIVQVFKELLAQAKVQY 214 (253)
Q Consensus 198 ~i~~l~~~l~~~~~~~~ 214 (253)
|++++|++|++.+...+
T Consensus 166 gv~~lf~~l~~~i~~~~ 182 (184)
T 3ihw_A 166 NVERVFQDVAQKVVALR 182 (184)
T ss_dssp THHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999999887653
No 7
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.1e-31 Score=208.72 Aligned_cols=170 Identities=24% Similarity=0.352 Sum_probs=145.8
Q ss_pred CCCCCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhccc
Q psy549 43 VGLQKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST 121 (253)
Q Consensus 43 ~~~~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~ 121 (253)
+......++|+|+|++|||||||+++|+++.+...+..|.. +.....+.+ ++..+.+++||+||++++..++..+++.
T Consensus 20 ~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ 98 (201)
T 2ew1_A 20 MEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEI-NGEKVKLQIWDTAGQERFRSITQSYYRS 98 (201)
T ss_dssp --CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGHHHHGGGSTT
T ss_pred ccccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEECCCcHHHHHHHHHHHhc
Confidence 34456679999999999999999999999988666555554 666667777 7778899999999999999999999999
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHH
Q psy549 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIV 200 (253)
Q Consensus 122 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 200 (253)
+|++|+|||++++.+|..+..|+..+......++|+++|+||+|+.+. .+..+.++.++. ..++++++|||++|.|++
T Consensus 99 ~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~-~~~~~~~~~Sa~~g~gv~ 177 (201)
T 2ew1_A 99 ANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSE-AQDMYYLETSAKESDNVE 177 (201)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHH-HHTCCEEECCTTTCTTHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHH-HcCCEEEEEeCCCCCCHH
Confidence 999999999999999999999999888876678999999999999754 566677777776 556899999999999999
Q ss_pred HHHHHHHHHHHHhc
Q psy549 201 QVFKELLAQAKVQY 214 (253)
Q Consensus 201 ~l~~~l~~~~~~~~ 214 (253)
++|++|++.+....
T Consensus 178 ~l~~~l~~~i~~~~ 191 (201)
T 2ew1_A 178 KLFLDLACRLISEA 191 (201)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987653
No 8
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=100.00 E-value=4.6e-31 Score=204.54 Aligned_cols=170 Identities=26% Similarity=0.373 Sum_probs=144.2
Q ss_pred CCCCCCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcc
Q psy549 42 GVGLQKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIS 120 (253)
Q Consensus 42 ~~~~~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~ 120 (253)
........++|+|+|++|||||||+++|+++.+...+..+.. +.....+.+ ++..+.+.+||+||++++...+..+++
T Consensus 15 ~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 93 (189)
T 2gf9_A 15 VPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYR-HDKRIKLQIWDTAGQERYRTITTAYYR 93 (189)
T ss_dssp CCTTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEE-TTEEEEEEEEECCSCCSSCCSGGGGGT
T ss_pred CCcccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEE-CCeEEEEEEEeCCCcHHHhhhHHHhcc
Confidence 333455679999999999999999999999988665555554 444555666 677889999999999999999999999
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCH
Q psy549 121 TADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNI 199 (253)
Q Consensus 121 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 199 (253)
.+|++|+|||++++.++..+..|+..+......++|+++|+||+|+... .+..+.++.++. ..+++++++||++|.|+
T Consensus 94 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~g~gi 172 (189)
T 2gf9_A 94 GAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLAD-DLGFEFFEASAKENINV 172 (189)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHH-HHTCEEEECBTTTTBSH
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHH-HcCCeEEEEECCCCCCH
Confidence 9999999999999999999999999888776667999999999999765 556667777777 45689999999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy549 200 VQVFKELLAQAKVQ 213 (253)
Q Consensus 200 ~~l~~~l~~~~~~~ 213 (253)
+++|++|++.+.+.
T Consensus 173 ~~l~~~l~~~i~~~ 186 (189)
T 2gf9_A 173 KQVFERLVDVICEK 186 (189)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988765
No 9
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.98 E-value=3.1e-31 Score=205.90 Aligned_cols=172 Identities=27% Similarity=0.352 Sum_probs=144.0
Q ss_pred CCCCCCCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhc
Q psy549 41 TGVGLQKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSI 119 (253)
Q Consensus 41 ~~~~~~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~ 119 (253)
.........+||+|+|++|||||||+++|+++.+...+..+.. +.....+.+ ++..+.+.+||+||++++..++..++
T Consensus 13 ~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~ 91 (191)
T 2a5j_A 13 GLVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNI-DGKQIKLQIWDTAGQESFRSITRSYY 91 (191)
T ss_dssp CCCCTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEE-TTEEEEEEEECCTTGGGTSCCCHHHH
T ss_pred ccccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEE-CCEEEEEEEEECCCchhhhhhHHHHh
Confidence 3334456789999999999999999999999888655555544 555566777 77788999999999999999999999
Q ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCC
Q psy549 120 STADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYN 198 (253)
Q Consensus 120 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 198 (253)
+.+|++|+|||++++.++..+..|+..+......++|+++|+||+|+... .+..+.++.++. ..+++++++||+++.|
T Consensus 92 ~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-~~~~~~~~~Sa~~~~g 170 (191)
T 2a5j_A 92 RGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAR-EHGLIFMETSAKTACN 170 (191)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHH-HHTCEEEEECTTTCTT
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHH-HcCCEEEEEeCCCCCC
Confidence 99999999999999999999999999888876678999999999999764 566677777776 5678999999999999
Q ss_pred HHHHHHHHHHHHHHhc
Q psy549 199 IVQVFKELLAQAKVQY 214 (253)
Q Consensus 199 i~~l~~~l~~~~~~~~ 214 (253)
++++|++|++.+.+..
T Consensus 171 i~~l~~~l~~~i~~~~ 186 (191)
T 2a5j_A 171 VEEAFINTAKEIYRKI 186 (191)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999987654
No 10
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.98 E-value=5e-31 Score=203.81 Aligned_cols=165 Identities=32% Similarity=0.558 Sum_probs=145.8
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEE
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVL 127 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 127 (253)
..++|+|+|++|||||||+++|+++.+...+.+++.+.+...+.+ ++..+.+.+||+||++++..++..+++.+|++++
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEE-TTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEE-CCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 568999999999999999999999998888888888888888888 7888899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHh-cCCCCCEEEEEecCCCCCccccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHHHH
Q psy549 128 VYAVDDASTWDVVKDLREQIVNK-RGLMVPIVVVGNKCELEFKDVRREIAETIALYDWQCGFVECSAKENYNIVQVFKEL 206 (253)
Q Consensus 128 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 206 (253)
|||++++.++..+..|+..+... ...++|+++|+||+|+.......+.+..++. ..+++++++||++|.|++++|++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~g~gi~~l~~~l 160 (189)
T 4dsu_A 82 VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLAR-SYGIPFIETSAKTRQGVDDAFYTL 160 (189)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHH-HHTCCEEECCTTTCTTHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHH-HcCCeEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999888774 3457999999999999887778888888887 556899999999999999999999
Q ss_pred HHHHHHhc
Q psy549 207 LAQAKVQY 214 (253)
Q Consensus 207 ~~~~~~~~ 214 (253)
.+.+....
T Consensus 161 ~~~~~~~~ 168 (189)
T 4dsu_A 161 VREIRKHK 168 (189)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 99987653
No 11
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.98 E-value=8.1e-31 Score=201.16 Aligned_cols=167 Identities=34% Similarity=0.545 Sum_probs=146.9
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEE
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAF 125 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 125 (253)
....++|+|+|++|||||||+++|++..+...+.+|+...+...+.+ ++..+.+.+||+||++++..++..+++.+|++
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 84 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSV-DGIPARLDILDTAGQEEFGAMREQYMRAGHGF 84 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEE-TTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEE-CCEEEEEEEEECCCchhhHHHHHHHHhhCCEE
Confidence 45679999999999999999999999998888888888777777777 77788999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHH-hcCCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHH
Q psy549 126 VLVYAVDDASTWDVVKDLREQIVN-KRGLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVF 203 (253)
Q Consensus 126 i~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 203 (253)
++|||++++.++..+..|+..+.. ....++|+++|+||+|+... .+..+.+..++. ..+++++++||++|.|++++|
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-~~~~~~~~~Sa~~~~gv~~l~ 163 (181)
T 2fn4_A 85 LLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGA-SHHVAYFEASAKLRLNVDEAF 163 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHH-HTTCEEEECBTTTTBSHHHHH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHH-HcCCeEEEecCCCCCCHHHHH
Confidence 999999999999999999988855 34467999999999999765 566777777777 567899999999999999999
Q ss_pred HHHHHHHHHhc
Q psy549 204 KELLAQAKVQY 214 (253)
Q Consensus 204 ~~l~~~~~~~~ 214 (253)
++|.+.+....
T Consensus 164 ~~l~~~~~~~~ 174 (181)
T 2fn4_A 164 EQLVRAVRKYQ 174 (181)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhh
Confidence 99999987654
No 12
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.98 E-value=1.1e-30 Score=201.53 Aligned_cols=168 Identities=33% Similarity=0.577 Sum_probs=144.9
Q ss_pred CCCCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCC
Q psy549 44 GLQKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTAD 123 (253)
Q Consensus 44 ~~~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 123 (253)
......++|+|+|++|||||||+++|++..+...+.+++...+...+.+ ++..+.+.+||+||++++..++..+++.+|
T Consensus 13 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 91 (187)
T 2a9k_A 13 QNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVL-DGEEVQIDILDTAGQEDYAAIRDNYFRSGE 91 (187)
T ss_dssp ----CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEE-TTEEEEEEEEECCCTTCCHHHHHHHHHHCS
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEE-CCEEEEEEEEECCCCcccHHHHHHHhccCC
Confidence 3345679999999999999999999999998888888887777777777 777889999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHH
Q psy549 124 AFVLVYAVDDASTWDVVKDLREQIVNKRG-LMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQ 201 (253)
Q Consensus 124 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 201 (253)
++++|||++++.++..+..|+..+..... .++|+++|+||+|+.+. .+..+.+..+.. ..+++++++||+++.|+++
T Consensus 92 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~ 170 (187)
T 2a9k_A 92 GFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAE-QWNVNYVETSAKTRANVDK 170 (187)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHH-HTTCEEEECCTTTCTTHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHH-HcCCeEEEeCCCCCCCHHH
Confidence 99999999999999999999888877543 47999999999999765 556666777776 5678999999999999999
Q ss_pred HHHHHHHHHHHh
Q psy549 202 VFKELLAQAKVQ 213 (253)
Q Consensus 202 l~~~l~~~~~~~ 213 (253)
+|++|.+.+...
T Consensus 171 l~~~l~~~i~~~ 182 (187)
T 2a9k_A 171 VFFDLMREIRAR 182 (187)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999988654
No 13
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.98 E-value=4.7e-31 Score=206.72 Aligned_cols=168 Identities=23% Similarity=0.357 Sum_probs=139.8
Q ss_pred CCCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCC
Q psy549 45 LQKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTAD 123 (253)
Q Consensus 45 ~~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 123 (253)
.....++|+|+|++|||||||+++|.++.+...+..|.. ++....+.+ ++..+.+.+||+||++++..++..+++.+|
T Consensus 25 ~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 103 (201)
T 2hup_A 25 QYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEI-QGKRVKLQIWDTAGQERFRTITQSYYRSAN 103 (201)
T ss_dssp -CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEE-TTEEEEEEEECCTTCGGGHHHHHHHHTTCS
T ss_pred ccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEE-CCEEEEEEEEECCCcHhHHHHHHHHHhhCC
Confidence 345679999999999999999999999988666655554 555667777 777789999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCC-cEEEeccCCCCCHHH
Q psy549 124 AFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQC-GFVECSAKENYNIVQ 201 (253)
Q Consensus 124 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~ 201 (253)
++|+|||++++.+|..+..|+..+......++|+++|+||+|+... .+..+.++.++. ..++ ++++|||+++.||++
T Consensus 104 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~-~~~~~~~~~~SA~~g~gi~~ 182 (201)
T 2hup_A 104 GAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAE-HYDILCAIETSAKDSSNVEE 182 (201)
T ss_dssp EEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHH-HTTCSEEEECBTTTTBSHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHH-HcCCCEEEEEeCCCCCCHHH
Confidence 9999999999999999999999888876678999999999999764 566677777777 4566 999999999999999
Q ss_pred HHHHHHHHHHHhc
Q psy549 202 VFKELLAQAKVQY 214 (253)
Q Consensus 202 l~~~l~~~~~~~~ 214 (253)
+|++|++.+....
T Consensus 183 l~~~l~~~i~~~~ 195 (201)
T 2hup_A 183 AFLRVATELIMRH 195 (201)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999987653
No 14
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.98 E-value=3e-31 Score=209.25 Aligned_cols=165 Identities=24% Similarity=0.387 Sum_probs=140.7
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEE
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFV 126 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 126 (253)
...++|+|+|++|+|||||+++|.++.+...+.+|+.+.+...+.+ ++..+.+.+||+||+++|..++..+++++|++|
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 85 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAV-DGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 85 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEEC-SSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEE-CCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence 4579999999999999999999999998878888888777777777 778899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHHhcCCCCCEEEEEecCCCCCcc---------ccHHHHHHHHHhcCCCcEEEeccCCC
Q psy549 127 LVYAVDDASTWDVVK-DLREQIVNKRGLMVPIVVVGNKCELEFKD---------VRREIAETIALYDWQCGFVECSAKEN 196 (253)
Q Consensus 127 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~---------~~~~~~~~~~~~~~~~~~~~~Sa~~~ 196 (253)
+|||++++.+|..+. .|+..+.... +++|+++|+||+|+.+.. +..+.+..++......+++++||++|
T Consensus 86 lv~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g 164 (212)
T 2j0v_A 86 LAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQ 164 (212)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCC
Confidence 999999999999986 7888777654 579999999999987652 25666777776444458999999999
Q ss_pred CCHHHHHHHHHHHHHHh
Q psy549 197 YNIVQVFKELLAQAKVQ 213 (253)
Q Consensus 197 ~~i~~l~~~l~~~~~~~ 213 (253)
.|++++|++|++.+...
T Consensus 165 ~gi~~l~~~l~~~~~~~ 181 (212)
T 2j0v_A 165 QNVKAVFDTAIKVVLQP 181 (212)
T ss_dssp TTHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHhhh
Confidence 99999999999988654
No 15
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.98 E-value=3e-31 Score=205.49 Aligned_cols=163 Identities=26% Similarity=0.399 Sum_probs=138.1
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEE
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAF 125 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 125 (253)
....+||+|+|++|||||||+++|+++.+...+.+|+...+...+.+ ++..+.+++||++|++++..+ ..+++.+|++
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ 95 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETV-DHQPVHLRVMDTADLDTPRNC-ERYLNWAHAF 95 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEE-TTEEEEEEEEECCC---CCCT-HHHHTTCSEE
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEE-CCEEEEEEEEECCCCCcchhH-HHHHhhCCEE
Confidence 45679999999999999999999999998888888888776667777 778899999999999998875 5688999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhc---CCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEecc-CCCCCHH
Q psy549 126 VLVYAVDDASTWDVVKDLREQIVNKR---GLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSA-KENYNIV 200 (253)
Q Consensus 126 i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa-~~~~~i~ 200 (253)
++|||++++.+|..+..|+..+.... ..++|+++|+||+|+... .+..+.+..++. ..++++++||| +++.||+
T Consensus 96 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-~~~~~~~e~Sa~~~g~gv~ 174 (187)
T 3c5c_A 96 LVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAG-RFGCLFFEVSACLDFEHVQ 174 (187)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHH-HHTCEEEECCSSSCSHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHH-HcCCcEEEEeecCccccHH
Confidence 99999999999999999998887753 257999999999999764 566777777877 55689999999 8999999
Q ss_pred HHHHHHHHHHH
Q psy549 201 QVFKELLAQAK 211 (253)
Q Consensus 201 ~l~~~l~~~~~ 211 (253)
++|++|++.+.
T Consensus 175 ~lf~~l~~~i~ 185 (187)
T 3c5c_A 175 HVFHEAVREAR 185 (187)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998874
No 16
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.98 E-value=3.7e-31 Score=205.75 Aligned_cols=171 Identities=27% Similarity=0.406 Sum_probs=139.7
Q ss_pred CCCCCCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcc
Q psy549 42 GVGLQKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIS 120 (253)
Q Consensus 42 ~~~~~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~ 120 (253)
.+.+....++|+|+|++|||||||+++|+++.+...+..+.. +.....+.+ ++..+.+.+||+||++++...+..+++
T Consensus 19 ~p~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~~~~~~~~~~ 97 (192)
T 2il1_A 19 SPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVEL-RGKKIRLQIWDTAGQERFNSITSAYYR 97 (192)
T ss_dssp ---CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEE-TTEEEEEEEEEECCSGGGHHHHHHHHH
T ss_pred CCcccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEE-CCeEEEEEEEeCCCcHHHHHHHHHHhc
Confidence 344566789999999999999999999999887655555543 666667777 777889999999999999999999999
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCH
Q psy549 121 TADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNI 199 (253)
Q Consensus 121 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 199 (253)
.+|++|+|||++++.++..+..|+..+......++|+++|+||+|+... .+..+.++.++....+.+++++||++|.|+
T Consensus 98 ~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi 177 (192)
T 2il1_A 98 SAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNV 177 (192)
T ss_dssp HCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSH
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCH
Confidence 9999999999999999999999998888776678999999999999765 566777778887445789999999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy549 200 VQVFKELLAQAKVQ 213 (253)
Q Consensus 200 ~~l~~~l~~~~~~~ 213 (253)
+++|++|++.+.++
T Consensus 178 ~~l~~~l~~~i~~~ 191 (192)
T 2il1_A 178 DEIFLKLVDDILKK 191 (192)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988653
No 17
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.98 E-value=3.1e-31 Score=211.01 Aligned_cols=168 Identities=24% Similarity=0.360 Sum_probs=137.2
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEE
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAF 125 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 125 (253)
...++|+|+|++|||||||+++|.+..+...+.++.. ++....+.+ ++..+.+.|||+||+++|..++..+++.+|++
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v 89 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEI-EGKRIKAQIWDTAGQERYRAITSAYYRGAVGA 89 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEE-TTEEEEEEEECCTTTTTTTCCCGGGTTTCCEE
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEE-CCEEEEEEEEECCCccchhhhHHHHhccCCEE
Confidence 5579999999999999999999999988665555544 555566777 77788999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHH
Q psy549 126 VLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFK 204 (253)
Q Consensus 126 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 204 (253)
|+|||++++.+|..+..|+..+......++|+++|+||+|+... .+..+.+..++. ..+++++++||+++.||+++|+
T Consensus 90 ilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~l~~ 168 (223)
T 3cpj_B 90 LIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQ-ENQLLFTETSALNSENVDKAFE 168 (223)
T ss_dssp EEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHH-HTTCEEEECCCC-CCCHHHHHH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHH-HcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999888776667999999999999764 566667777776 5678999999999999999999
Q ss_pred HHHHHHHHhccc
Q psy549 205 ELLAQAKVQYNL 216 (253)
Q Consensus 205 ~l~~~~~~~~~~ 216 (253)
+|++.+......
T Consensus 169 ~l~~~i~~~~~~ 180 (223)
T 3cpj_B 169 ELINTIYQKVSK 180 (223)
T ss_dssp HHHHHHTTCC--
T ss_pred HHHHHHHHHhhh
Confidence 999998765443
No 18
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.98 E-value=4.3e-31 Score=203.10 Aligned_cols=165 Identities=27% Similarity=0.544 Sum_probs=145.1
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEE
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFV 126 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 126 (253)
...++|+|+|++|||||||+++|+++.+...+.+|+...+...+.+ ++..+.+.+||+||++++..++..+++.+|+++
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 82 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITV-NGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI 82 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEE-TTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEE-CCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence 3578999999999999999999999988888888888777777777 888899999999999999988899999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHH
Q psy549 127 LVYAVDDASTWDVVKDLREQIVNKR-GLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFK 204 (253)
Q Consensus 127 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 204 (253)
+|||++++.+|+.+..|+..+.... ..++|+++|+||+|+... .+..+.++.++. ..+++++++||+++.|++++|+
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~~l~~ 161 (181)
T 3t5g_A 83 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAE-SWNAAFLESSAKENQTAVDVFR 161 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHH-HTTCEEEECCTTSHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHH-HhCCcEEEEecCCCCCHHHHHH
Confidence 9999999999999999998887643 357999999999999755 677778888887 6788999999999999999999
Q ss_pred HHHHHHHHh
Q psy549 205 ELLAQAKVQ 213 (253)
Q Consensus 205 ~l~~~~~~~ 213 (253)
+|++.+...
T Consensus 162 ~l~~~~~~~ 170 (181)
T 3t5g_A 162 RIILEAEKM 170 (181)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHHh
Confidence 999998655
No 19
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.98 E-value=4.5e-31 Score=207.26 Aligned_cols=169 Identities=28% Similarity=0.445 Sum_probs=144.3
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCE
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADA 124 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 124 (253)
....++|+|+|++|||||||+++|++..+...+..+.. +.....+.+ ++..+.+.+||+||++++..++..+++.+|+
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMV-DDRLVTMQIWDTAGQERFQSLGVAFYRGADC 83 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEES-SSCEEEEEEEEECSSGGGSCSCCGGGTTCSE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEE-CCEEEEEEEEeCCCcHHHHHhHHHHHhCCcE
Confidence 34679999999999999999999999988666665553 666667777 7778899999999999999888889999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcC----CCCCEEEEEecCCCCCccccHHHHHHHHHhcCCCcEEEeccCCCCCHH
Q psy549 125 FVLVYAVDDASTWDVVKDLREQIVNKRG----LMVPIVVVGNKCELEFKDVRREIAETIALYDWQCGFVECSAKENYNIV 200 (253)
Q Consensus 125 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 200 (253)
+|+|||++++.++..+..|+..+..... .++|+++|+||+|+....+..+.+..+.....+++++++||++|.|++
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 163 (207)
T 1vg8_A 84 CVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVE 163 (207)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCceEEEEeCCCCCCHH
Confidence 9999999999999999999888776543 468999999999998666677777777765677899999999999999
Q ss_pred HHHHHHHHHHHHhcc
Q psy549 201 QVFKELLAQAKVQYN 215 (253)
Q Consensus 201 ~l~~~l~~~~~~~~~ 215 (253)
++|++|++.+.....
T Consensus 164 ~l~~~l~~~~~~~~~ 178 (207)
T 1vg8_A 164 QAFQTIARNALKQET 178 (207)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999877643
No 20
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.98 E-value=1.5e-30 Score=202.44 Aligned_cols=168 Identities=29% Similarity=0.417 Sum_probs=146.7
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCE
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADA 124 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 124 (253)
....++|+|+|++|||||||+++|+++.+...+.++.. +.....+.+ ++..+.+.+||+||++++...+..+++.+|+
T Consensus 13 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 91 (196)
T 3tkl_A 13 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTITSSYYRGAHG 91 (196)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEE-TTEEEEEEEEEECCSGGGCTTHHHHHTTCSE
T ss_pred cccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEE-CCEEEEEEEEECCCcHhhhhhHHHHHhhCCE
Confidence 35679999999999999999999999887665555544 666677777 7778899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHH
Q psy549 125 FVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVF 203 (253)
Q Consensus 125 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 203 (253)
+|+|||++++.++..+..|+..+......++|+++|+||+|+... .+..+.++.++. ..+++++++||++|.|++++|
T Consensus 92 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~g~gv~~l~ 170 (196)
T 3tkl_A 92 IIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFAD-SLGIPFLETSAKNATNVEQSF 170 (196)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHH-HTTCCEEEECTTTCTTHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHH-HcCCcEEEEeCCCCCCHHHHH
Confidence 999999999999999999999988877778999999999999765 566677777877 667899999999999999999
Q ss_pred HHHHHHHHHhcc
Q psy549 204 KELLAQAKVQYN 215 (253)
Q Consensus 204 ~~l~~~~~~~~~ 215 (253)
++|++.+.....
T Consensus 171 ~~l~~~i~~~~~ 182 (196)
T 3tkl_A 171 MTMAAEIKKRMG 182 (196)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHhc
Confidence 999999977644
No 21
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.98 E-value=1.6e-30 Score=196.96 Aligned_cols=162 Identities=39% Similarity=0.641 Sum_probs=142.4
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEE
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVL 127 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 127 (253)
..++|+|+|++|||||||+++|.++.+...+.+|....+...+.+ ++..+.+.+||+||++++..++..+++.+|++++
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 80 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEV-DCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL 80 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEES-SSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEE-CCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 358999999999999999999999988877778877777777777 7788999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHh-cCCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHHH
Q psy549 128 VYAVDDASTWDVVKDLREQIVNK-RGLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFKE 205 (253)
Q Consensus 128 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 205 (253)
|||++++.++..+..|+..+... ...++|+++|+||+|+.+. .+..+.+..++....+.+++++||++|.|++++|++
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (167)
T 1c1y_A 81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYD 160 (167)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHH
Confidence 99999999999999998888774 3457999999999999765 456677777777444789999999999999999999
Q ss_pred HHHHH
Q psy549 206 LLAQA 210 (253)
Q Consensus 206 l~~~~ 210 (253)
|++.+
T Consensus 161 l~~~i 165 (167)
T 1c1y_A 161 LVRQI 165 (167)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99876
No 22
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.97 E-value=1.6e-30 Score=198.93 Aligned_cols=167 Identities=24% Similarity=0.433 Sum_probs=142.2
Q ss_pred CCCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCC
Q psy549 45 LQKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTAD 123 (253)
Q Consensus 45 ~~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 123 (253)
.....++|+|+|++|+|||||+++|+++.+...+.++.. +.....+.+ ++..+.+.+||+||++++...+..+++.+|
T Consensus 3 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (177)
T 1wms_A 3 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEV-DGHFVTMQIWDTAGQERFRSLRTPFYRGSD 81 (177)
T ss_dssp CCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEE-TTEEEEEEEEECCCCGGGHHHHGGGGTTCS
T ss_pred CccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEE-CCEEEEEEEEeCCCchhhhhhHHHHHhcCC
Confidence 345679999999999999999999999887665555554 555667777 777889999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcC----CCCCEEEEEecCCCCCccccHHHHHHHHHhcCCCcEEEeccCCCCCH
Q psy549 124 AFVLVYAVDDASTWDVVKDLREQIVNKRG----LMVPIVVVGNKCELEFKDVRREIAETIALYDWQCGFVECSAKENYNI 199 (253)
Q Consensus 124 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 199 (253)
++++|||++++.++..+..|+..+..... .++|+++|+||+|+....+..+.+..++......+++++||++|.|+
T Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 161 (177)
T 1wms_A 82 CCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNV 161 (177)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEECCTTTCTTH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence 99999999999999999999988877543 67899999999999866777777788877567889999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy549 200 VQVFKELLAQAKV 212 (253)
Q Consensus 200 ~~l~~~l~~~~~~ 212 (253)
+++|+++++.+.+
T Consensus 162 ~~l~~~l~~~~~~ 174 (177)
T 1wms_A 162 AAAFEEAVRRVLA 174 (177)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998854
No 23
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.97 E-value=8.6e-31 Score=204.89 Aligned_cols=168 Identities=24% Similarity=0.399 Sum_probs=135.4
Q ss_pred CCCCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCC
Q psy549 44 GLQKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTAD 123 (253)
Q Consensus 44 ~~~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 123 (253)
......++|+|+|++|||||||+++|+++.+...+.+|+.+.+...+.+ ++..+.+.+||+||++++..++..+++++|
T Consensus 15 ~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 93 (201)
T 2q3h_A 15 GAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSV-DGRPVRLQLCDTAGQDEFDKLRPLCYTNTD 93 (201)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEE-TTEEEEEEEEECCCSTTCSSSGGGGGTTCS
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEE-CCEEEEEEEEECCCCHHHHHHhHhhcCCCc
Confidence 3456789999999999999999999999888888888888777777777 778889999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHH-HHHHHHHHhcCCCCCEEEEEecCCCCCc-------------cccHHHHHHHHHhcCCCcEE
Q psy549 124 AFVLVYAVDDASTWDVVK-DLREQIVNKRGLMVPIVVVGNKCELEFK-------------DVRREIAETIALYDWQCGFV 189 (253)
Q Consensus 124 ~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~-------------~~~~~~~~~~~~~~~~~~~~ 189 (253)
++|+|||++++.+|..+. .|+..+.... .++|+++|+||+|+... .+..+.+..++......+++
T Consensus 94 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 172 (201)
T 2q3h_A 94 IFLLCFSVVSPSSFQNVSEKWVPEIRCHC-PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYI 172 (201)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHC-SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEE
Confidence 999999999999999986 6888777654 57999999999998752 45666777777744445899
Q ss_pred EeccCCCCCHHHHHHHHHHHHHHh
Q psy549 190 ECSAKENYNIVQVFKELLAQAKVQ 213 (253)
Q Consensus 190 ~~Sa~~~~~i~~l~~~l~~~~~~~ 213 (253)
+|||++|.|++++|++|++.+...
T Consensus 173 ~~Sa~~g~gi~~l~~~l~~~~~~~ 196 (201)
T 2q3h_A 173 ECSALTQKNLKEVFDAAIVAGIQY 196 (201)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred EEecCCCCCHHHHHHHHHHHHhcc
Confidence 999999999999999999988654
No 24
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=1.6e-30 Score=202.18 Aligned_cols=164 Identities=24% Similarity=0.391 Sum_probs=142.1
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEE
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAF 125 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 125 (253)
....++|+|+|++|||||||+++|.++.+...+.+|+.+.+...+.+ ++..+.+.+||+||++++..++..+++++|++
T Consensus 15 ~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 93 (194)
T 2atx_A 15 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTV-GGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF 93 (194)
T ss_dssp EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEES-SSCEEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEE-CCEEEEEEEEECCCCcchhHHHHHhcCCCCEE
Confidence 34679999999999999999999999998888888887777777777 77889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHH-HHHHHHHHhcCCCCCEEEEEecCCCCCc-------------cccHHHHHHHHHhcCCCcEEEe
Q psy549 126 VLVYAVDDASTWDVVK-DLREQIVNKRGLMVPIVVVGNKCELEFK-------------DVRREIAETIALYDWQCGFVEC 191 (253)
Q Consensus 126 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~-------------~~~~~~~~~~~~~~~~~~~~~~ 191 (253)
|+|||++++.+|..+. .|+..+.... +++|+++|+||+|+... .+..+.+..++......+++++
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 172 (194)
T 2atx_A 94 LICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVEC 172 (194)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEe
Confidence 9999999999999987 7888777653 47999999999999763 4556777777774443489999
Q ss_pred ccCCCCCHHHHHHHHHHHHH
Q psy549 192 SAKENYNIVQVFKELLAQAK 211 (253)
Q Consensus 192 Sa~~~~~i~~l~~~l~~~~~ 211 (253)
||++|.|++++|++|++.+.
T Consensus 173 Sa~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 173 SALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp CTTTCTTHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHh
Confidence 99999999999999998874
No 25
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.97 E-value=2.9e-31 Score=209.92 Aligned_cols=168 Identities=22% Similarity=0.300 Sum_probs=142.5
Q ss_pred CCCCCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccC
Q psy549 43 VGLQKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTA 122 (253)
Q Consensus 43 ~~~~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~ 122 (253)
.......+||+|+|++|||||||+++|+++.+...+.+|....+...+.+ ++..+.+.+||++|++++..++..+++.+
T Consensus 21 ~~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 99 (214)
T 3q3j_B 21 PQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLET-EEQRVELSLWDTSGSPYYDNVRPLCYSDS 99 (214)
T ss_dssp ------CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC---CEEEEEEEEECCSGGGTTTGGGGCTTC
T ss_pred CCCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEE-CCEEEEEEEEECCCCHhHHHHHHHHcCCC
Confidence 34456789999999999999999999999999888888888777777777 77889999999999999999999999999
Q ss_pred CEEEEEEECCChhhHHH-HHHHHHHHHHhcCCCCCEEEEEecCCCCC-------------ccccHHHHHHHHHhcCCC-c
Q psy549 123 DAFVLVYAVDDASTWDV-VKDLREQIVNKRGLMVPIVVVGNKCELEF-------------KDVRREIAETIALYDWQC-G 187 (253)
Q Consensus 123 d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~-------------~~~~~~~~~~~~~~~~~~-~ 187 (253)
|++|+|||++++.+|.. +..|+..+.... .++|+++|+||+|+.. ..+..+.+..++. ..++ +
T Consensus 100 d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~ 177 (214)
T 3q3j_B 100 DAVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAK-QLGAEI 177 (214)
T ss_dssp SEEEEEEETTCTHHHHHHHTHHHHHHHHHC-TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHH-HHTCSE
T ss_pred eEEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHH-HcCCCE
Confidence 99999999999999998 688988887764 6799999999999975 3577788888888 4456 9
Q ss_pred EEEeccCCCCC-HHHHHHHHHHHHHHh
Q psy549 188 FVECSAKENYN-IVQVFKELLAQAKVQ 213 (253)
Q Consensus 188 ~~~~Sa~~~~~-i~~l~~~l~~~~~~~ 213 (253)
+++|||++|.| |+++|+++++.+...
T Consensus 178 ~~e~SA~~g~g~v~~lf~~l~~~~~~~ 204 (214)
T 3q3j_B 178 YLEGSAFTSEKSIHSIFRTASMLCLNK 204 (214)
T ss_dssp EEECCTTTCHHHHHHHHHHHHHHHHC-
T ss_pred EEEeccCCCcccHHHHHHHHHHHHhcc
Confidence 99999999998 999999999988654
No 26
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.97 E-value=1.3e-30 Score=199.63 Aligned_cols=164 Identities=27% Similarity=0.367 Sum_probs=142.9
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCE
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADA 124 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 124 (253)
....++|+|+|++|||||||+++|.++.+...+..+.. +.....+.+ ++..+.+.+||+||++++...+..+++.+|+
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 90 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEV-SGQKIKLQIWDTAGQERFRAVTRSYYRGAAG 90 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEE-TTEEEEEEEEECTTGGGTCHHHHHHHHTCSE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEE-CCeEEEEEEEECCCChHhhhhHHHHhccCCE
Confidence 45679999999999999999999999988766666655 455566666 7778899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHH
Q psy549 125 FVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVF 203 (253)
Q Consensus 125 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 203 (253)
+++|||++++.++..+..|+..+......++|+++|+||+|+... .+..+.++.++. ..+++++++||++|.|++++|
T Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~l~ 169 (179)
T 1z0f_A 91 ALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAE-ENGLLFLEASAKTGENVEDAF 169 (179)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHH-HTTCEEEECCTTTCTTHHHHH
T ss_pred EEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHH-HcCCEEEEEeCCCCCCHHHHH
Confidence 999999999999999999999888877678999999999999754 556667777776 567899999999999999999
Q ss_pred HHHHHHHH
Q psy549 204 KELLAQAK 211 (253)
Q Consensus 204 ~~l~~~~~ 211 (253)
+++++.+.
T Consensus 170 ~~l~~~i~ 177 (179)
T 1z0f_A 170 LEAAKKIY 177 (179)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHh
Confidence 99998874
No 27
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=1.7e-30 Score=199.35 Aligned_cols=167 Identities=24% Similarity=0.424 Sum_probs=134.1
Q ss_pred CCCCcceEEEECCCCCCHHHHHHHHHhCCCC-CCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccC
Q psy549 45 LQKDKRRVVVMGGARVGKSSIISQFLYDRFI-SRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTA 122 (253)
Q Consensus 45 ~~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~-~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~ 122 (253)
.....++|+|+|++|||||||+++|++..+. ..+.+++. +.....+.+ ++..+.+.+||+||++++...+..+++.+
T Consensus 6 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~ 84 (180)
T 2g6b_A 6 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDV-DGVKVKLQMWDTAGQERFRSVTHAYYRDA 84 (180)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEE-TTEEEEEEEEECCCC--------CCGGGC
T ss_pred cCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEE-CCEEEEEEEEeCCCcHHHHHHHHHHccCC
Confidence 4567899999999999999999999998874 34444444 555555566 77788999999999999999999999999
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHH
Q psy549 123 DAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQ 201 (253)
Q Consensus 123 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 201 (253)
|++++|||++++.++..+..|+..+......++|+++|+||+|+... .+..+..+.++. ..+++++++||+++.|+++
T Consensus 85 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~ 163 (180)
T 2g6b_A 85 HALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAK-EYGLPFMETSAKTGLNVDL 163 (180)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHH-HHTCCEEECCTTTCTTHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHH-HcCCeEEEEeCCCCCCHHH
Confidence 99999999999999999999999888876678999999999999865 556667777776 4567999999999999999
Q ss_pred HHHHHHHHHHHh
Q psy549 202 VFKELLAQAKVQ 213 (253)
Q Consensus 202 l~~~l~~~~~~~ 213 (253)
+|+++.+.+...
T Consensus 164 l~~~l~~~~~~~ 175 (180)
T 2g6b_A 164 AFTAIAKELKRR 175 (180)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHHH
Confidence 999999988543
No 28
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.97 E-value=2.5e-30 Score=195.82 Aligned_cols=162 Identities=34% Similarity=0.605 Sum_probs=139.4
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEE
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVL 127 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 127 (253)
..++|+|+|++|+|||||+++|.++.+...+.+++...+...+.+ ++..+.+.+||+||++++...+..+++.+|++++
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVL-DGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEE-TTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEE-CCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence 458999999999999999999999988777777777777777777 7778899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHHH
Q psy549 128 VYAVDDASTWDVVKDLREQIVNKRG-LMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFKE 205 (253)
Q Consensus 128 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 205 (253)
|||++++.++..+..|+..+..... .++|+++|+||+|+.+. .+..+.+..+.. ..+++++++||++|.|++++|++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~l~~~ 160 (168)
T 1u8z_A 82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAD-QWNVNYVETSAKTRANVDKVFFD 160 (168)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHH-HHTCEEEECCTTTCTTHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHH-HcCCeEEEeCCCCCCCHHHHHHH
Confidence 9999999999999999988887543 47999999999999765 556666777766 45689999999999999999999
Q ss_pred HHHHHH
Q psy549 206 LLAQAK 211 (253)
Q Consensus 206 l~~~~~ 211 (253)
+.+.+.
T Consensus 161 l~~~i~ 166 (168)
T 1u8z_A 161 LMREIR 166 (168)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999875
No 29
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.97 E-value=2.6e-30 Score=199.47 Aligned_cols=169 Identities=22% Similarity=0.288 Sum_probs=145.6
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCE
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADA 124 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 124 (253)
....++|+|+|++|||||||+++|+++.+...+.++.. +.....+.+ ++..+.+.+||+||++++...+..+++.+|+
T Consensus 7 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 85 (186)
T 2bme_A 7 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINV-GGKYVKLQIWDTAGQERFRSVTRSYYRGAAG 85 (186)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEE-TTEEEEEEEEEECCSGGGHHHHHTTSTTCSE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEE-CCEEEEEEEEeCCCcHHHHHHHHHHHhcCCE
Confidence 34579999999999999999999999988666555555 556666777 7778899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHH
Q psy549 125 FVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVF 203 (253)
Q Consensus 125 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 203 (253)
+|+|||++++.++..+..|+..+......++|+++|+||+|+... .+..+.+..++. ..+++++++||++|.|++++|
T Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~l~ 164 (186)
T 2bme_A 86 ALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQ-ENELMFLETSALTGENVEEAF 164 (186)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH-HTTCEEEECCTTTCTTHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHH-HcCCEEEEecCCCCCCHHHHH
Confidence 999999999999999999998888776678999999999999754 566666777776 567899999999999999999
Q ss_pred HHHHHHHHHhccc
Q psy549 204 KELLAQAKVQYNL 216 (253)
Q Consensus 204 ~~l~~~~~~~~~~ 216 (253)
+++++.+......
T Consensus 165 ~~l~~~~~~~~~~ 177 (186)
T 2bme_A 165 VQCARKILNKIES 177 (186)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhhh
Confidence 9999998776443
No 30
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.97 E-value=1.3e-30 Score=198.20 Aligned_cols=163 Identities=25% Similarity=0.386 Sum_probs=134.6
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEE
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAF 125 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 125 (253)
...++|+|+|++|||||||+++|++..+...+.++.. +.....+.+ ++..+.+.+||+||++++...+..+++.+|++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNI-GGKRVNLAIWDTAGQERFHALGPIYYRDSNGA 82 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEES-SSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEE-CCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence 4579999999999999999999999888665555554 555567777 77889999999999999999988899999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHH
Q psy549 126 VLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFK 204 (253)
Q Consensus 126 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 204 (253)
++|||++++.++..+..|+..+......++|+++|+||+|+... .+..+.++.++. ..+++++++||++|.|++++|+
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~l~~ 161 (170)
T 1z08_A 83 ILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAE-SVGAKHYHTSAKQNKGIEELFL 161 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHH-HTTCEEEEEBTTTTBSHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHH-HcCCeEEEecCCCCCCHHHHHH
Confidence 99999999999999999998887765567999999999999765 566677777777 5678999999999999999999
Q ss_pred HHHHHHH
Q psy549 205 ELLAQAK 211 (253)
Q Consensus 205 ~l~~~~~ 211 (253)
+|++.+.
T Consensus 162 ~l~~~~~ 168 (170)
T 1z08_A 162 DLCKRMI 168 (170)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998875
No 31
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.97 E-value=3.3e-30 Score=197.61 Aligned_cols=161 Identities=25% Similarity=0.341 Sum_probs=135.8
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEE
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFV 126 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 126 (253)
...+||+|+|++|||||||+++|.++.+.. +.+|..+.+...+.+ ++..+.+++||++|+++ ..+++++|++|
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i 77 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYKKEMLV-DGQTHLVLIREEAGAPD-----AKFSGWADAVI 77 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEEEEEEEE-TTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeEEEEEEE-CCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence 357999999999999999999999998865 566766667777777 77889999999999987 45778899999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhc---CCCCCEEEEEecCCCCC---ccccHHHHHHHHHhcCCCcEEEeccCCCCCHH
Q psy549 127 LVYAVDDASTWDVVKDLREQIVNKR---GLMVPIVVVGNKCELEF---KDVRREIAETIALYDWQCGFVECSAKENYNIV 200 (253)
Q Consensus 127 ~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 200 (253)
+|||++++.+|..+..|+..+.... ..++|+++|+||+|+.. ..+..+.++.++....+++++++||++|.|++
T Consensus 78 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 157 (178)
T 2iwr_A 78 FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVD 157 (178)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHH
Confidence 9999999999999999876665543 25799999999999842 35677777777764557899999999999999
Q ss_pred HHHHHHHHHHHHhc
Q psy549 201 QVFKELLAQAKVQY 214 (253)
Q Consensus 201 ~l~~~l~~~~~~~~ 214 (253)
++|+++++.+....
T Consensus 158 ~lf~~l~~~~~~~~ 171 (178)
T 2iwr_A 158 RVFQEVAQKVVTLR 171 (178)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887653
No 32
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.97 E-value=1.4e-30 Score=197.88 Aligned_cols=164 Identities=24% Similarity=0.434 Sum_probs=139.0
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEE
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFV 126 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 126 (253)
..++|+|+|++|+|||||+++|+++.+...+.++.. +.....+.+ ++..+.+.+||+||++++...+..+++.+|+++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 80 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDI-NGKKVKLQIWDTAGQERFRTITTAYYRGAMGII 80 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEES-SSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEeCCCChhhhhhHHHHhccCCEEE
Confidence 358999999999999999999999888655555544 555666777 777889999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHHHH
Q psy549 127 LVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIALYDWQCGFVECSAKENYNIVQVFKEL 206 (253)
Q Consensus 127 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 206 (253)
+|||++++.++..+..|+..+......++|+++|+||+|+....+..+..+.++. ..+++++++||++|.|++++|++|
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gv~~l~~~l 159 (170)
T 1g16_A 81 LVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAK-ELGIPFIESSAKNDDNVNEIFFTL 159 (170)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHH-HHTCCEEECBTTTTBSHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHHH-HcCCeEEEEECCCCCCHHHHHHHH
Confidence 9999999999999999999888876678999999999999666677777777777 456799999999999999999999
Q ss_pred HHHHHHh
Q psy549 207 LAQAKVQ 213 (253)
Q Consensus 207 ~~~~~~~ 213 (253)
.+.+.+.
T Consensus 160 ~~~~~~~ 166 (170)
T 1g16_A 160 AKLIQEK 166 (170)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 9988654
No 33
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.97 E-value=3.1e-30 Score=196.98 Aligned_cols=164 Identities=28% Similarity=0.424 Sum_probs=128.5
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCC--ChhhHHHhcccCCEE
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQ--FPAMRELSISTADAF 125 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--~~~~~~~~~~~~d~~ 125 (253)
..++|+|+|++|||||||+++|.+..+...+..+..+.....+.+ ++..+.+.+||+||++. +..+...+++.+|++
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTV-DGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEE-TTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEE-CCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence 468999999999999999999999887544444434556667777 77888999999999988 667777889999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHH
Q psy549 126 VLVYAVDDASTWDVVKDLREQIVNKR-GLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVF 203 (253)
Q Consensus 126 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 203 (253)
++|||++++.+|..+..|+..+.... ..++|+++|+||+|+.+. .+..+.++.++. ..+++++++||++|.|++++|
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~-~~~~~~~~~Sa~~g~gi~~l~ 160 (175)
T 2nzj_A 82 VIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAV-VFDCKFIETSATLQHNVAELF 160 (175)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHH-HHTSEEEECBTTTTBSHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHH-HcCCeEEEEecCCCCCHHHHH
Confidence 99999999999999999988877642 357999999999999764 566666777776 456899999999999999999
Q ss_pred HHHHHHHHHh
Q psy549 204 KELLAQAKVQ 213 (253)
Q Consensus 204 ~~l~~~~~~~ 213 (253)
++|++.+...
T Consensus 161 ~~l~~~~~~~ 170 (175)
T 2nzj_A 161 EGVVRQLRLR 170 (175)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999988654
No 34
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.97 E-value=3.4e-30 Score=200.25 Aligned_cols=167 Identities=24% Similarity=0.336 Sum_probs=143.4
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCE
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADA 124 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 124 (253)
....++|+|+|++|||||||+++|++..+...+..+.. +.....+.+ ++..+.+.+||+||++++..++..+++.+|+
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 100 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVML-GTAAVKAQIWDTAGLERYRAITSAYYRGAVG 100 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEE-TTEEEEEEEEEESCCCTTCTTHHHHHTTCCE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEeCCCchhhhhhhHHHhccCCE
Confidence 45679999999999999999999999888666555544 455556666 6778899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHH
Q psy549 125 FVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVF 203 (253)
Q Consensus 125 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 203 (253)
+|+|||++++.++..+..|+..+......++|+++|+||+|+... .+..+.+..++. ..+++++++||++|.|++++|
T Consensus 101 vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~l~ 179 (193)
T 2oil_A 101 ALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAE-NNGLLFLETSALDSTNVELAF 179 (193)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH-HTTCEEEEECTTTCTTHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHH-HcCCEEEEEeCCCCCCHHHHH
Confidence 999999999999999999998887766677999999999999764 556677777776 567899999999999999999
Q ss_pred HHHHHHHHHhc
Q psy549 204 KELLAQAKVQY 214 (253)
Q Consensus 204 ~~l~~~~~~~~ 214 (253)
++|++.+.+..
T Consensus 180 ~~l~~~i~~~~ 190 (193)
T 2oil_A 180 ETVLKEIFAKV 190 (193)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999887653
No 35
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.97 E-value=1.4e-30 Score=202.60 Aligned_cols=167 Identities=22% Similarity=0.360 Sum_probs=143.5
Q ss_pred CCCCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCC
Q psy549 44 GLQKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTAD 123 (253)
Q Consensus 44 ~~~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 123 (253)
......+||+|+|++|||||||+++|.++.+...+.+|....+...+.+ ++..+.+.+||+||++++...+..+++++|
T Consensus 18 ~~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 96 (194)
T 3reg_A 18 ENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKY-KNEEFILHLWDTAGQEEYDRLRPLSYADSD 96 (194)
T ss_dssp ---CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred cccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEE-CCEEEEEEEEECCCcHHHHHHhHhhccCCc
Confidence 3456789999999999999999999999999888888888777777777 788899999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHH-HHHHHHHHHhcCCCCCEEEEEecCCCCC---ccccHHHHHHHHHhcCCCc-EEEeccCCCCC
Q psy549 124 AFVLVYAVDDASTWDVV-KDLREQIVNKRGLMVPIVVVGNKCELEF---KDVRREIAETIALYDWQCG-FVECSAKENYN 198 (253)
Q Consensus 124 ~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~ 198 (253)
++++|||++++.+|..+ ..|+..+... ..++|+++|+||+|+.. ..+..+.+..++. ..+++ ++++||++|.|
T Consensus 97 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~g 174 (194)
T 3reg_A 97 VVLLCFAVNNRTSFDNISTKWEPEIKHY-IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQ-KLGCVAYIEASSVAKIG 174 (194)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHH-CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHH-HHTCSCEEECBTTTTBS
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEEChhhccCCCCcccHHHHHHHHH-hcCCCEEEEeecCCCCC
Confidence 99999999999999997 6677766654 36799999999999975 3567777888887 44555 99999999999
Q ss_pred HHHHHHHHHHHHHHh
Q psy549 199 IVQVFKELLAQAKVQ 213 (253)
Q Consensus 199 i~~l~~~l~~~~~~~ 213 (253)
++++|++|++.+...
T Consensus 175 i~~l~~~l~~~i~~~ 189 (194)
T 3reg_A 175 LNEVFEKSVDCIFSN 189 (194)
T ss_dssp HHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999988654
No 36
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.97 E-value=4e-31 Score=203.63 Aligned_cols=166 Identities=28% Similarity=0.477 Sum_probs=115.5
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEE
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAF 125 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 125 (253)
...++|+|+|++|||||||+++|.++.+...+.++.. ++....+.+ ++..+.+.+||+||++++...+..+++++|++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 84 (183)
T ss_dssp SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEE-TTEEEEEEEEEC---------CCTTTTTCSEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEE-CCEEEEEEEEcCCCChhhhhhHHHHHhcCCEE
Confidence 4579999999999999999999998887665555554 555667777 77788999999999999999888899999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHH
Q psy549 126 VLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFK 204 (253)
Q Consensus 126 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 204 (253)
|+|||++++.+|..+..|+..+......++|+++|+||+|+.+. .+..+.++.++. ..+++++++||++|.|++++|+
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~l~~ 163 (183)
T 2fu5_C 85 MLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLAL-DYGIKFMETSAKANINVENAFF 163 (183)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHH-HHTCEEEECCC---CCHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHH-HcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999888876678999999999999765 566677777776 4568999999999999999999
Q ss_pred HHHHHHHHhc
Q psy549 205 ELLAQAKVQY 214 (253)
Q Consensus 205 ~l~~~~~~~~ 214 (253)
+|.+.+....
T Consensus 164 ~l~~~i~~~~ 173 (183)
T 2fu5_C 164 TLARDIKAKM 173 (183)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999987653
No 37
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=1.7e-30 Score=204.74 Aligned_cols=167 Identities=25% Similarity=0.380 Sum_probs=134.8
Q ss_pred CCCCcceEEEECCCCCCHHHHHHHHHhCC--CCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCC-ChhhHHHhccc
Q psy549 45 LQKDKRRVVVMGGARVGKSSIISQFLYDR--FISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQ-FPAMRELSIST 121 (253)
Q Consensus 45 ~~~~~~~I~iiG~~~~GKSsLi~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-~~~~~~~~~~~ 121 (253)
.....+||+|+|++|||||||+++|.+.. +...+..+..+.+...+.+ ++..+.+.+|||+|.+. +..+...+++.
T Consensus 33 ~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~-~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~ 111 (211)
T 2g3y_A 33 SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMV-DGESATIILLDMWENKGENEWLHDHCMQV 111 (211)
T ss_dssp --CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEE-TTEEEEEEEECCTTTTHHHHHHHHCCCCC
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEE-CCeeeEEEEeecCCCcchhhhHHHHHHhh
Confidence 34567999999999999999999999643 4555555555667777777 88888999999999887 55566667889
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHHh-cCCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCH
Q psy549 122 ADAFVLVYAVDDASTWDVVKDLREQIVNK-RGLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNI 199 (253)
Q Consensus 122 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 199 (253)
+|++|+|||+++..+|+.+..|+..+... ...++|+++|+||+|+... .+..+.++.++. ..++++++|||++|.||
T Consensus 112 a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~-~~~~~~~e~SAk~g~~v 190 (211)
T 2g3y_A 112 GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAV-VFDCKFIETSAAVQHNV 190 (211)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHH-HHTCEEEECBTTTTBSH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHH-HcCCEEEEEeCCCCCCH
Confidence 99999999999999999999998877653 2357999999999999754 566666677766 55689999999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy549 200 VQVFKELLAQAKVQ 213 (253)
Q Consensus 200 ~~l~~~l~~~~~~~ 213 (253)
+++|++|++.+...
T Consensus 191 ~elf~~l~~~i~~~ 204 (211)
T 2g3y_A 191 KELFEGIVRQVRLR 204 (211)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988654
No 38
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.97 E-value=3.4e-30 Score=194.87 Aligned_cols=163 Identities=36% Similarity=0.654 Sum_probs=142.2
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEE
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVL 127 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 127 (253)
..++|+|+|++|+|||||+++|.++.+...+.+++.+.+...+.+ ++..+.+.+||+||++++..++..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEV-DSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL 80 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEE-TTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEE-CCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 358999999999999999999999988777777777777777777 7778889999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHHH
Q psy549 128 VYAVDDASTWDVVKDLREQIVNKR-GLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFKE 205 (253)
Q Consensus 128 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 205 (253)
|||++++.++..+..|+..+.... ..++|+++|+||+|+... ++..+....++. ..+++++++||++|.|++++|++
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~l~~~ 159 (167)
T 1kao_A 81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAE-EWGCPFMETSAKSKTMVDELFAE 159 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHH-HHTSCEEEECTTCHHHHHHHHHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHH-HhCCCEEEecCCCCcCHHHHHHH
Confidence 999999999999999988887753 357999999999998654 566667777776 45779999999999999999999
Q ss_pred HHHHHHH
Q psy549 206 LLAQAKV 212 (253)
Q Consensus 206 l~~~~~~ 212 (253)
|.+.+.+
T Consensus 160 l~~~~~~ 166 (167)
T 1kao_A 160 IVRQMNY 166 (167)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 9988743
No 39
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.97 E-value=2.7e-30 Score=201.49 Aligned_cols=167 Identities=23% Similarity=0.322 Sum_probs=136.9
Q ss_pred CCCCcceEEEECCCCCCHHHHHHHHHhCCCC-CCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChh-hHHHhcccC
Q psy549 45 LQKDKRRVVVMGGARVGKSSIISQFLYDRFI-SRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPA-MRELSISTA 122 (253)
Q Consensus 45 ~~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-~~~~~~~~~ 122 (253)
+....++|+|+|++|||||||+++|.+.... ...+.++.+.+...+.+ ++..+.+.+||++|++.+.. ++..+++.+
T Consensus 19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~ 97 (195)
T 3cbq_A 19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMV-DKEEVTLVVYDIWEQGDAGGWLRDHCLQTG 97 (195)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEE-TTEEEEEEEECCCCCSGGGHHHHHHHHHHC
T ss_pred CCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEE-CCEEEEEEEEecCCCccchhhhHHHhhccC
Confidence 3456799999999999999999999864432 22233444666777777 88889999999999998765 777789999
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHH
Q psy549 123 DAFVLVYAVDDASTWDVVKDLREQIVNKRG-LMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIV 200 (253)
Q Consensus 123 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 200 (253)
|++|+|||++++.+|..+..|+..+..... .++|+++|+||+|+... .+..+.++.++. ..+++++++||+++.|++
T Consensus 98 d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~-~~~~~~~e~Sa~~~~~v~ 176 (195)
T 3cbq_A 98 DAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAG-TLSCKHIETSAALHHNTR 176 (195)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHH-HTTCEEEEEBTTTTBSHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHH-HhCCEEEEEcCCCCCCHH
Confidence 999999999999999999999988877543 47999999999999764 566777778877 456899999999999999
Q ss_pred HHHHHHHHHHHHh
Q psy549 201 QVFKELLAQAKVQ 213 (253)
Q Consensus 201 ~l~~~l~~~~~~~ 213 (253)
++|+++++.+...
T Consensus 177 ~lf~~l~~~i~~~ 189 (195)
T 3cbq_A 177 ELFEGAVRQIRLR 189 (195)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988543
No 40
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.97 E-value=3.6e-30 Score=197.71 Aligned_cols=165 Identities=22% Similarity=0.364 Sum_probs=141.5
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCE
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADA 124 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 124 (253)
....++|+|+|++|+|||||+++|+++.+...+..+.. +.....+.+ ++..+.+.+||+||++++...+..+++.+|+
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 87 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAV-NDATVKFEIWDTAGQERYHSLAPMYYRGAAA 87 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEE-TTEEEEEEEEECCCSGGGGGGTHHHHTTCSE
T ss_pred CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEE-CCEEEEEEEEeCCCChhhhhhhHHHhccCCE
Confidence 45679999999999999999999999988666555544 455566666 6778899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHH
Q psy549 125 FVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVF 203 (253)
Q Consensus 125 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 203 (253)
+|+|||++++.+|..+..|+..+.....+++|+++|+||+|+.+. .+..+.++.++. ..+++++++||++|.|++++|
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~g~gi~~l~ 166 (181)
T 2efe_B 88 AIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQ-ENGLFFMETSAKTATNVKEIF 166 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHH-HTTCEEEECCSSSCTTHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHH-HcCCEEEEEECCCCCCHHHHH
Confidence 999999999999999999999888876678999999999999754 556677777776 567899999999999999999
Q ss_pred HHHHHHHHH
Q psy549 204 KELLAQAKV 212 (253)
Q Consensus 204 ~~l~~~~~~ 212 (253)
++|++.+..
T Consensus 167 ~~l~~~~~~ 175 (181)
T 2efe_B 167 YEIARRLPR 175 (181)
T ss_dssp HHHHHTCC-
T ss_pred HHHHHHHHh
Confidence 999887643
No 41
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.97 E-value=6.7e-30 Score=198.01 Aligned_cols=165 Identities=32% Similarity=0.546 Sum_probs=134.3
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEE
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFV 126 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 126 (253)
...++|+|+|++|||||||+++|+++.+...+..++...+...+.+ ++..+.+.+||+||++++...+..+++.+|+++
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 97 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 97 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEE-TTEEEEEEEEECCC-----------CTTCSEEE
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEE-CCEEEEEEEEECCChHHHHHHHHHhhCcCCEEE
Confidence 4569999999999999999999999988777777777777777777 777889999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEecCCCCCccccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHHH
Q psy549 127 LVYAVDDASTWDVVKDLREQIVNKRG-LMVPIVVVGNKCELEFKDVRREIAETIALYDWQCGFVECSAKENYNIVQVFKE 205 (253)
Q Consensus 127 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 205 (253)
+|||+++..++..+..|+..+..... .++|+++|+||+|+.......+.++.++. ..+++++++||+++.|++++|++
T Consensus 98 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~l~~~ 176 (190)
T 3con_A 98 CVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAK-SYGIPFIETSAKTRQGVEDAFYT 176 (190)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHH-HHTCCEEECCTTTCTTHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHH-HcCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999888777543 46999999999999876666777777777 45679999999999999999999
Q ss_pred HHHHHHHh
Q psy549 206 LLAQAKVQ 213 (253)
Q Consensus 206 l~~~~~~~ 213 (253)
|.+.+...
T Consensus 177 l~~~~~~~ 184 (190)
T 3con_A 177 LVREIRQY 184 (190)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988654
No 42
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.97 E-value=3.2e-30 Score=195.72 Aligned_cols=162 Identities=23% Similarity=0.362 Sum_probs=139.3
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEE
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAF 125 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 125 (253)
...++|+|+|++|+|||||+++|+++.+...+..+.. +.....+.+ ++..+.+.+||+||++++...+..+++.+|++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCL-DDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA 82 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEE-TTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEE-CCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence 3568999999999999999999999887665555544 444556666 67788999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHH
Q psy549 126 VLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFK 204 (253)
Q Consensus 126 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 204 (253)
++|||++++.++..+..|+..+.....+++|+++|+||+|+... .+..+.+..++. ..+++++++||++|.|++++|+
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~g~gi~~l~~ 161 (170)
T 1r2q_A 83 IVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYAD-DNSLLFMETSAKTSMNVNEIFM 161 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH-HTTCEEEECCTTTCTTHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHH-HcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999888876678999999999998764 555666777776 5678999999999999999999
Q ss_pred HHHHHH
Q psy549 205 ELLAQA 210 (253)
Q Consensus 205 ~l~~~~ 210 (253)
+|++.+
T Consensus 162 ~i~~~~ 167 (170)
T 1r2q_A 162 AIAKKL 167 (170)
T ss_dssp HHHHTS
T ss_pred HHHHHH
Confidence 998765
No 43
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.97 E-value=8.5e-31 Score=205.11 Aligned_cols=166 Identities=28% Similarity=0.448 Sum_probs=140.3
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEE
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAF 125 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 125 (253)
....+||+|+|++|||||||+++|+++.+...+.+|....+...+.+ ++..+.+.+||+||++++..++..+++.+|++
T Consensus 21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 99 (201)
T 3oes_A 21 LVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTL-GKDEFHLHLVDTAGQDEYSILPYSFIIGVHGY 99 (201)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC-----CEEEEEEEECCCCTTCCCCGGGTTTCCEE
T ss_pred CCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEE-CCEEEEEEEEECCCccchHHHHHHHHhcCCEE
Confidence 35689999999999999999999999998888878887766666666 67778999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHH
Q psy549 126 VLVYAVDDASTWDVVKDLREQIVNKR-GLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVF 203 (253)
Q Consensus 126 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 203 (253)
++|||++++.+|..+..|+..+.... ..++|+++|+||+|+... .+....+..++. ..+++++++||++|.|++++|
T Consensus 100 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~~l~ 178 (201)
T 3oes_A 100 VLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAE-SWGATFMESSARENQLTQGIF 178 (201)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHH-HHTCEEEECCTTCHHHHHHHH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHH-HhCCeEEEEeCCCCCCHHHHH
Confidence 99999999999999999998887642 356899999999998765 666777778877 567899999999999999999
Q ss_pred HHHHHHHHHh
Q psy549 204 KELLAQAKVQ 213 (253)
Q Consensus 204 ~~l~~~~~~~ 213 (253)
++|++.+...
T Consensus 179 ~~l~~~i~~~ 188 (201)
T 3oes_A 179 TKVIQEIARV 188 (201)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhh
Confidence 9999998665
No 44
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=2.2e-31 Score=206.78 Aligned_cols=168 Identities=24% Similarity=0.389 Sum_probs=145.0
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCE
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADA 124 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 124 (253)
....+||+|+|++|||||||+++|+++.+...+..+.. +.....+.+ ++..+.+.|||+||++.+..++..+++.+|+
T Consensus 20 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 98 (191)
T 3dz8_A 20 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYR-HEKRVKLQIWDTAGQERYRTITTAYYRGAMG 98 (191)
T ss_dssp EEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEE-TTTTEEEEEECHHHHHHCHHHHHHHHTTCCE
T ss_pred cCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEE-CCEEEEEEEEeCCChHHHHHHHHHHHccCCE
Confidence 45679999999999999999999999887666655554 555566666 6677899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHH
Q psy549 125 FVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVF 203 (253)
Q Consensus 125 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 203 (253)
+|+|||++++.+|+.+..|+..+......++|+++|+||+|+... .+..+.++.++. ..+++++++||++|.|++++|
T Consensus 99 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~l~ 177 (191)
T 3dz8_A 99 FILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAE-QLGFDFFEASAKENISVRQAF 177 (191)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHH-HHTCEEEECBTTTTBSHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHH-HcCCeEEEEECCCCCCHHHHH
Confidence 999999999999999999999988877678999999999999765 566777777877 567899999999999999999
Q ss_pred HHHHHHHHHhcc
Q psy549 204 KELLAQAKVQYN 215 (253)
Q Consensus 204 ~~l~~~~~~~~~ 215 (253)
++|++.+.+...
T Consensus 178 ~~l~~~i~~~~~ 189 (191)
T 3dz8_A 178 ERLVDAICDKMS 189 (191)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHhcc
Confidence 999999876643
No 45
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.97 E-value=4.6e-30 Score=194.43 Aligned_cols=162 Identities=25% Similarity=0.359 Sum_probs=118.3
Q ss_pred cceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEE
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLV 128 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 128 (253)
.+||+|+|++|||||||+++|.+...... ..+....+...+.+ ++..+.+.+||++|++++..++..+++.+|++++|
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPE-AEAAGHTYDRSIVV-DGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV 79 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEEEEEEEE-TTEEEEEEEEECC---------------CCEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCC-CCccccceEEEEEE-CCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence 58999999999999999999997665322 23333444556666 78889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHh-cCCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHHHH
Q psy549 129 YAVDDASTWDVVKDLREQIVNK-RGLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFKEL 206 (253)
Q Consensus 129 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 206 (253)
||++++.+|..+..|+..+... ...++|+++|+||+|+.+. .+..+.++.++. ..+++++++||++|.|++++|++|
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~l~~~l 158 (166)
T 3q72_A 80 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAV-VFDCKFIETSAALHHNVQALFEGV 158 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHH-HTTCEEEECBGGGTBSHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHH-HhCCcEEEeccCCCCCHHHHHHHH
Confidence 9999999999999999888764 3467999999999999765 677777788877 667899999999999999999999
Q ss_pred HHHHHHh
Q psy549 207 LAQAKVQ 213 (253)
Q Consensus 207 ~~~~~~~ 213 (253)
++.+..+
T Consensus 159 ~~~~~~~ 165 (166)
T 3q72_A 159 VRQIRLR 165 (166)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9988654
No 46
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.97 E-value=6.2e-30 Score=196.35 Aligned_cols=168 Identities=27% Similarity=0.422 Sum_probs=131.1
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCE
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADA 124 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 124 (253)
....++|+|+|++|||||||+++|+++.+...+.++.. +.....+.+.++..+.+.+||+||++++...+..+++.+|+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC 84 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence 34679999999999999999999999887666655553 66666777743667899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcC----CCCCEEEEEecCCCCCc--cccHHHHHHHHHhcCCCcEEEeccCCCCC
Q psy549 125 FVLVYAVDDASTWDVVKDLREQIVNKRG----LMVPIVVVGNKCELEFK--DVRREIAETIALYDWQCGFVECSAKENYN 198 (253)
Q Consensus 125 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 198 (253)
+|+|||++++.++..+..|+..+..... .++|+++|+||+|+... .+..+.+..++......+++++||++|.|
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~g 164 (182)
T 1ky3_A 85 CVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAIN 164 (182)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBS
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCC
Confidence 9999999999999999999988877543 67899999999999644 45677777777656778999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q psy549 199 IVQVFKELLAQAKVQ 213 (253)
Q Consensus 199 i~~l~~~l~~~~~~~ 213 (253)
++++|++|++.+.+.
T Consensus 165 i~~l~~~l~~~~~~~ 179 (182)
T 1ky3_A 165 VDTAFEEIARSALQQ 179 (182)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999988765
No 47
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.97 E-value=5.1e-30 Score=200.36 Aligned_cols=164 Identities=27% Similarity=0.424 Sum_probs=132.6
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCE
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADA 124 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 124 (253)
....++|+|+|++|||||||+++|+++.+...+..+.. +.....+.+ ++..+.+.|||+||++++...+..+++.+|+
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 103 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIV-DGERTVLQLWDTAGQERFRSIAKSYFRKADG 103 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEE-TTEEEEEEEEECTTCTTCHHHHHHHHHHCSE
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEE-CCEEEEEEEEECCCCcchhhhHHHHHhhCCE
Confidence 45679999999999999999999999988665555554 455566777 7778899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCC-------ccccHHHHHHHHHhcCCCcEEEeccCCCC
Q psy549 125 FVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEF-------KDVRREIAETIALYDWQCGFVECSAKENY 197 (253)
Q Consensus 125 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 197 (253)
+|+|||++++.++..+..|+..+......++|+++|+||+|+.. ..+..+.++.++. ..+++++++||++|.
T Consensus 104 iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~SA~~g~ 182 (199)
T 2p5s_A 104 VLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAM-TYGALFCETSAKDGS 182 (199)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHH-HHTCEEEECCTTTCT
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHH-HcCCeEEEeeCCCCC
Confidence 99999999999999999999888776656799999999999862 2566777777777 457899999999999
Q ss_pred CHHHHHHHHHHHHH
Q psy549 198 NIVQVFKELLAQAK 211 (253)
Q Consensus 198 ~i~~l~~~l~~~~~ 211 (253)
|++++|.+|++.+.
T Consensus 183 gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 183 NIVEAVLHLAREVK 196 (199)
T ss_dssp THHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999998874
No 48
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.97 E-value=2.4e-30 Score=203.35 Aligned_cols=165 Identities=25% Similarity=0.386 Sum_probs=140.5
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEE
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAF 125 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 125 (253)
....+||+|+|++|||||||+++|.++.+...+.+|....+...+.+ ++..+.+.|||++|+++|..++..+++.+|++
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 103 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEI-DTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 103 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEES-SSSEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEE-CCEEEEEEEEeCCCcHhhhHHHHhhccCCCEE
Confidence 45679999999999999999999999998777777777666667777 77889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHH-HHHHHHHHHhcCCCCCEEEEEecCCCCCc-------------cccHHHHHHHHHhcCCCcEEEe
Q psy549 126 VLVYAVDDASTWDVV-KDLREQIVNKRGLMVPIVVVGNKCELEFK-------------DVRREIAETIALYDWQCGFVEC 191 (253)
Q Consensus 126 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~-------------~~~~~~~~~~~~~~~~~~~~~~ 191 (253)
|+|||++++.+|..+ ..|+..+.... .++|+++|+||+|+... .+..+.++.++......++++|
T Consensus 104 ilv~D~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 182 (205)
T 1gwn_A 104 LICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 182 (205)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEe
Confidence 999999999999998 67888776653 57999999999999742 4566777788774445789999
Q ss_pred ccC-CCCCHHHHHHHHHHHHHH
Q psy549 192 SAK-ENYNIVQVFKELLAQAKV 212 (253)
Q Consensus 192 Sa~-~~~~i~~l~~~l~~~~~~ 212 (253)
||+ ++.|++++|+++++.+.+
T Consensus 183 SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 183 SALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp CTTTCHHHHHHHHHHHHHHHHH
T ss_pred eeccCCcCHHHHHHHHHHHHhh
Confidence 999 689999999999998764
No 49
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.97 E-value=8.6e-30 Score=199.50 Aligned_cols=167 Identities=25% Similarity=0.401 Sum_probs=143.6
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEE
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAF 125 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 125 (253)
...++|+|+|++|||||||+++|++..+...+.++.. +.....+.+ ++..+.+.+||+||++++...+..+++.+|++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 84 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYR-NDKRIKLQIWDTAGLERYRTITTAYYRGAMGF 84 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGHHHHHTTGGGCSEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEE-CCeEEEEEEEECCCchhhcchHHHhhcCCCEE
Confidence 4568999999999999999999999988665555554 444556666 77788999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHH
Q psy549 126 VLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFK 204 (253)
Q Consensus 126 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 204 (253)
|+|||++++.+|..+..|+..+......++|+++|+||+|+... .+..+.++.++. ..+++++++||++|.|++++|+
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~l~~ 163 (203)
T 1zbd_A 85 ILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLAD-HLGFEFFEASAKDNINVKQTFE 163 (203)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHH-HHTCEEEECBTTTTBSSHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHH-HCCCeEEEEECCCCCCHHHHHH
Confidence 99999999999999999999888776667999999999999765 566677777777 4567999999999999999999
Q ss_pred HHHHHHHHhcc
Q psy549 205 ELLAQAKVQYN 215 (253)
Q Consensus 205 ~l~~~~~~~~~ 215 (253)
+|.+.+.....
T Consensus 164 ~l~~~i~~~~~ 174 (203)
T 1zbd_A 164 RLVDVICEKMS 174 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998876543
No 50
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.97 E-value=2.6e-30 Score=196.19 Aligned_cols=161 Identities=25% Similarity=0.358 Sum_probs=139.3
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEE
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFV 126 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 126 (253)
+.++|+|+|++|||||||+++|+++.+...+.++.. +.....+.+ ++..+.+.+||+||++++...+..+++.+|+++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 80 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTI-NEHTVKFEIWDTAGQERFASLAPXYYRNAQAAL 80 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEE-TTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEECCCChhhhhhhhhhhccCcEEE
Confidence 358999999999999999999999988665555554 455566677 777889999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc----cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHH
Q psy549 127 LVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK----DVRREIAETIALYDWQCGFVECSAKENYNIVQV 202 (253)
Q Consensus 127 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 202 (253)
+|||++++.++..+..|+..+......++|+++|+||+|+... .+..+..+.++. ..+++++++||++|.|++++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~l 159 (170)
T 1ek0_A 81 VVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAE-EKGLLFFETSAKTGENVNDV 159 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHH-HHTCEEEECCTTTCTTHHHH
T ss_pred EEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHH-HcCCEEEEEeCCCCCCHHHH
Confidence 9999999999999999999888876678999999999998653 566677777776 56789999999999999999
Q ss_pred HHHHHHHH
Q psy549 203 FKELLAQA 210 (253)
Q Consensus 203 ~~~l~~~~ 210 (253)
|++|.+.+
T Consensus 160 ~~~l~~~i 167 (170)
T 1ek0_A 160 FLGIGEKI 167 (170)
T ss_dssp HHHHHTTS
T ss_pred HHHHHHHH
Confidence 99998765
No 51
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.97 E-value=3.4e-30 Score=197.35 Aligned_cols=166 Identities=23% Similarity=0.327 Sum_probs=139.4
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCE
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADA 124 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 124 (253)
....++|+|+|++|||||||+++|.++.+...+.+|.. +.....+.+.++..+.+++||+||++++...+..+++++|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 34679999999999999999999999888665555654 67777788744467899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcC--CCCC-EEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHH
Q psy549 125 FVLVYAVDDASTWDVVKDLREQIVNKRG--LMVP-IVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIV 200 (253)
Q Consensus 125 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p-iilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 200 (253)
+++|||++++.++..+..|+..+..... ...| +++|+||+|+.+. .+..+.++.++. ..+++++++||++|.|++
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~ 161 (178)
T 2hxs_A 83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQ-ENGFSSHFVSAKTGDSVF 161 (178)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHH-HHTCEEEEECTTTCTTHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHH-HcCCcEEEEeCCCCCCHH
Confidence 9999999999999999899888776321 2345 8999999999764 566677777776 456899999999999999
Q ss_pred HHHHHHHHHHHH
Q psy549 201 QVFKELLAQAKV 212 (253)
Q Consensus 201 ~l~~~l~~~~~~ 212 (253)
++|++|++.+..
T Consensus 162 ~l~~~l~~~~~~ 173 (178)
T 2hxs_A 162 LCFQKVAAEILG 173 (178)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh
Confidence 999999998844
No 52
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=1e-29 Score=198.07 Aligned_cols=165 Identities=32% Similarity=0.540 Sum_probs=143.1
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEE
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFV 126 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 126 (253)
...++|+|+|++|||||||+++|+++.+...+.+|....+...+.+ ++..+.+.+||+||+++ ...+..+++.+|+++
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ii 103 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATI-DDEVVSMEILDTAGQED-TIQREGHMRWGEGFV 103 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEE-TTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEE-CCEEEEEEEEECCCCCc-ccchhhhhccCCEEE
Confidence 4679999999999999999999999998777777777666666777 77788999999999998 778888999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCC-CHHHHH
Q psy549 127 LVYAVDDASTWDVVKDLREQIVNKR-GLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENY-NIVQVF 203 (253)
Q Consensus 127 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~l~ 203 (253)
+|||++++.+|..+..|+..+.... ..++|+++|+||+|+... .+..+.+..++. ..+++++++||++|. |++++|
T Consensus 104 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~-~~~~~~~~~Sa~~g~~gi~~l~ 182 (196)
T 2atv_A 104 LVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLAT-ELACAFYECSACTGEGNITEIF 182 (196)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHH-HHTSEEEECCTTTCTTCHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHH-HhCCeEEEECCCcCCcCHHHHH
Confidence 9999999999999999988887743 367999999999999764 566777777776 457899999999999 999999
Q ss_pred HHHHHHHHHhc
Q psy549 204 KELLAQAKVQY 214 (253)
Q Consensus 204 ~~l~~~~~~~~ 214 (253)
++|++.+.+..
T Consensus 183 ~~l~~~i~~~~ 193 (196)
T 2atv_A 183 YELCREVRRRR 193 (196)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhc
Confidence 99999987653
No 53
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.97 E-value=5e-30 Score=202.15 Aligned_cols=168 Identities=23% Similarity=0.422 Sum_probs=142.9
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCE
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADA 124 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 124 (253)
....++|+|+|++|||||||+++|++..+...+.++.. +.....+.+ ++..+.+.+||+||++++...+..+++.+|+
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 95 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDI-NGKKVKLQLWDTAGQERFRTITTAYYRGAMG 95 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEE-TTEEEEEEEECCTTGGGGTCCCHHHHTTCSE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEE-CCEEEEEEEEeCCCcHHHHHHHHHHhccCCE
Confidence 45679999999999999999999999887655555544 555666777 7777899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHH
Q psy549 125 FVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIALYDWQCGFVECSAKENYNIVQVFK 204 (253)
Q Consensus 125 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 204 (253)
+|+|||++++.++..+..|+..+......++|+++|+||+|+....+..+....++. ..+++++++||+++.|++++|+
T Consensus 96 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~l~~ 174 (213)
T 3cph_A 96 IILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAK-ELGIPFIESSAKNDDNVNEIFF 174 (213)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHHHH-HHTCCEEECBTTTTBSSHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHHHH-HcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999999998888876667999999999999666677777777776 4567999999999999999999
Q ss_pred HHHHHHHHhcc
Q psy549 205 ELLAQAKVQYN 215 (253)
Q Consensus 205 ~l~~~~~~~~~ 215 (253)
+|.+.+.+...
T Consensus 175 ~l~~~~~~~~~ 185 (213)
T 3cph_A 175 TLAKLIQEKID 185 (213)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999877643
No 54
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.97 E-value=7.1e-30 Score=193.94 Aligned_cols=163 Identities=23% Similarity=0.317 Sum_probs=128.3
Q ss_pred cceEEEECCCCCCHHHHHHHHHhCCCCCC-ccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChh-hHHHhcccCCEEE
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYDRFISR-YKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPA-MRELSISTADAFV 126 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-~~~~~~~~~d~~i 126 (253)
.+||+|+|++|||||||+++|.+..+... ...++.+.....+.+ ++..+.+.+||++|++++.. ++..+++.+|+++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i 80 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMV-DKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFL 80 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEE-TTEEEEEEEECCCCC--------CHHHHHCSEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEE-CCeEEEEEEEECCCccccchhhhhhhhccCCEEE
Confidence 47999999999999999999997665332 233345677777777 88889999999999998876 6666788999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHH
Q psy549 127 LVYAVDDASTWDVVKDLREQIVNKRG-LMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFK 204 (253)
Q Consensus 127 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 204 (253)
+|||++++.+|..+..|+..+..... .++|+++|+||+|+.+. .+..+.+..++. ..+++++++||++|.|++++|+
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~~l~~ 159 (169)
T 3q85_A 81 IVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAG-TLSCKHIETSAALHHNTRELFE 159 (169)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHH-HTTCEEEECBTTTTBSHHHHHH
T ss_pred EEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHH-HcCCcEEEecCccCCCHHHHHH
Confidence 99999999999999999998887553 47999999999999754 677778888887 6678999999999999999999
Q ss_pred HHHHHHHHh
Q psy549 205 ELLAQAKVQ 213 (253)
Q Consensus 205 ~l~~~~~~~ 213 (253)
++++.+..+
T Consensus 160 ~l~~~i~~~ 168 (169)
T 3q85_A 160 GAVRQIRLR 168 (169)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhc
Confidence 999988654
No 55
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.97 E-value=9e-30 Score=193.35 Aligned_cols=162 Identities=25% Similarity=0.367 Sum_probs=140.6
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEE
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAF 125 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 125 (253)
...++|+|+|++|+|||||+++|.++.+...+.++.. +.....+.+ ++..+.+.+||+||.+++...+..+++.+|++
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~ 82 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQY-QNELHKFLIWDTAGLERFRALAPMYYRGSAAA 82 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEE-CCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence 3568999999999999999999999987666555555 444556666 67778999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHH
Q psy549 126 VLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFK 204 (253)
Q Consensus 126 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 204 (253)
++|||++++.++..+..|+..+.....+.+|+++|+||+|+... ++..+....++. ..+.+++++||+++.|++++|+
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~l~~ 161 (170)
T 1z0j_A 83 IIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYAD-SIHAIFVETSAKNAININELFI 161 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHH-HTTCEEEECBTTTTBSHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHH-HcCCEEEEEeCCCCcCHHHHHH
Confidence 99999999999999999999888876778999999999999764 566777777777 5678999999999999999999
Q ss_pred HHHHHH
Q psy549 205 ELLAQA 210 (253)
Q Consensus 205 ~l~~~~ 210 (253)
+|.+.+
T Consensus 162 ~i~~~i 167 (170)
T 1z0j_A 162 EISRRI 167 (170)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 998875
No 56
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.97 E-value=2.3e-30 Score=202.57 Aligned_cols=168 Identities=21% Similarity=0.295 Sum_probs=136.5
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCE
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADA 124 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 124 (253)
....++|+|+|++|||||||+++|+++.+...+..+.. +.....+.+ ++..+.+.|||+||++++...+..+++.+|+
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 100 (200)
T 2o52_A 22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNV-GGKTVKLQIWDTAGQERFRSVTRSYYRGAAG 100 (200)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEE-TTEEEEEEEECCTTHHHHSCCCHHHHTTCSE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEE-CCeeeEEEEEcCCCcHhHHHHHHHHhccCCE
Confidence 35679999999999999999999999887655555544 555666677 7777899999999999888888899999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHH
Q psy549 125 FVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVF 203 (253)
Q Consensus 125 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 203 (253)
+|+|||++++.++..+..|+..+......++|+++|+||+|+... .+....+..++. ..++++++|||++|.|++++|
T Consensus 101 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-~~~~~~~~~SA~~g~gi~~l~ 179 (200)
T 2o52_A 101 ALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQ-ENELMFLETSALTGENVEEAF 179 (200)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH-HTTCEEEEECTTTCTTHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHH-HcCCEEEEEeCCCCCCHHHHH
Confidence 999999999999999999999888776678999999999999754 566666777776 567899999999999999999
Q ss_pred HHHHHHHHHhcc
Q psy549 204 KELLAQAKVQYN 215 (253)
Q Consensus 204 ~~l~~~~~~~~~ 215 (253)
++|++.+.....
T Consensus 180 ~~l~~~i~~~~~ 191 (200)
T 2o52_A 180 LKCARTILNKID 191 (200)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999876543
No 57
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.97 E-value=3.5e-30 Score=197.61 Aligned_cols=166 Identities=25% Similarity=0.326 Sum_probs=140.4
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCE
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADA 124 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 124 (253)
....++|+|+|++|||||||+++|+++.+...+.++.. +.....+.+ ++..+.+.+||+||++.+...+..+++.+|+
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 84 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEI-NGEKVKLQIWDTAGQERFRTITSTYYRGTHG 84 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEE-TTEEEEEEEEEETTGGGCSSCCGGGGTTCSE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEE-CCEEEEEEEEcCCCchhhhhhHHHHhccCCE
Confidence 34679999999999999999999999887655544444 666677777 7778899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHH
Q psy549 125 FVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVF 203 (253)
Q Consensus 125 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 203 (253)
+++|||++++.++..+..|+..+.... .++|+++|+||+|+... .+..+....++. ..+++++++||++|.|++++|
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~l~ 162 (181)
T 3tw8_B 85 VIVVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVGNKNDDPERKVVETEDAYKFAG-QMGIQLFETSAKENVNVEEMF 162 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHC-TTSEEEEEEECTTCGGGCCSCHHHHHHHHH-HHTCCEEECBTTTTBSHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCCCchhcccCHHHHHHHHH-HcCCeEEEEECCCCCCHHHHH
Confidence 999999999999999999998887754 57999999999998765 456667777777 556899999999999999999
Q ss_pred HHHHHHHHHhc
Q psy549 204 KELLAQAKVQY 214 (253)
Q Consensus 204 ~~l~~~~~~~~ 214 (253)
++|.+.+....
T Consensus 163 ~~l~~~~~~~~ 173 (181)
T 3tw8_B 163 NCITELVLRAK 173 (181)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999887653
No 58
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.97 E-value=2.6e-29 Score=189.72 Aligned_cols=161 Identities=30% Similarity=0.542 Sum_probs=141.8
Q ss_pred cceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEE
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLV 128 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 128 (253)
.++|+++|++|+|||||+++|.++.+...+.++....+...+.+ ++..+.+.+||+||++++...+..+++.+|++++|
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVI-DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEE-TTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEE-CCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 58999999999999999999999988777777777766777777 77788999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEecCCCCCccccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHHHHH
Q psy549 129 YAVDDASTWDVVKDLREQIVNKRG-LMVPIVVVGNKCELEFKDVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELL 207 (253)
Q Consensus 129 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 207 (253)
||+++..++..+..|+..+..... .++|+++|+||+|+.......+..+.++. ..+++++++|++++.|++++|++|.
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~l~~~l~ 160 (166)
T 2ce2_X 82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLAR-SYGIPYIETSAKTRQGVEDAFYTLV 160 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHH-HHTCCEEEECTTTCTTHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHH-HcCCeEEEecCCCCCCHHHHHHHHH
Confidence 999999999999999888777543 47999999999999876667777777776 4567999999999999999999999
Q ss_pred HHHH
Q psy549 208 AQAK 211 (253)
Q Consensus 208 ~~~~ 211 (253)
+.+.
T Consensus 161 ~~~~ 164 (166)
T 2ce2_X 161 REIR 164 (166)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8874
No 59
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.97 E-value=3.6e-30 Score=202.14 Aligned_cols=164 Identities=23% Similarity=0.389 Sum_probs=139.3
Q ss_pred CCCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCE
Q psy549 45 LQKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADA 124 (253)
Q Consensus 45 ~~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 124 (253)
.....+||+|+|++|||||||+++|+++.+...+.+++.+.+...+.+ ++..+.+.+||+||++++...+..+++.+|+
T Consensus 26 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 104 (204)
T 4gzl_A 26 FQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGLEDYDRLRPLSYPQTDV 104 (204)
T ss_dssp ----CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEEC-C-CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred hcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEE-CCEEEEEEEEECCCchhhHHHHHHHhccCCE
Confidence 345679999999999999999999999999888888888888888888 8888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHH-HHHHHHHHhcCCCCCEEEEEecCCCCCcc-------------ccHHHHHHHHHhcCCCcEEE
Q psy549 125 FVLVYAVDDASTWDVVK-DLREQIVNKRGLMVPIVVVGNKCELEFKD-------------VRREIAETIALYDWQCGFVE 190 (253)
Q Consensus 125 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~-------------~~~~~~~~~~~~~~~~~~~~ 190 (253)
+++|||++++.+|..+. .|+..+.... .++|+++|+||+|+.... +..+.+..++......++++
T Consensus 105 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 183 (204)
T 4gzl_A 105 FLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE 183 (204)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEE
Confidence 99999999999999986 6877777654 679999999999987652 55667777777555567999
Q ss_pred eccCCCCCHHHHHHHHHHHH
Q psy549 191 CSAKENYNIVQVFKELLAQA 210 (253)
Q Consensus 191 ~Sa~~~~~i~~l~~~l~~~~ 210 (253)
+||++|.|++++|++|.+.+
T Consensus 184 ~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 184 CSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp CCTTTCTTHHHHHHHHHHTT
T ss_pred eeCCCCCCHHHHHHHHHHHh
Confidence 99999999999999998754
No 60
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.97 E-value=1.7e-29 Score=195.86 Aligned_cols=167 Identities=23% Similarity=0.331 Sum_probs=140.9
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eee-eeeEEcCCCc---------EEEEEEEeCCCCCCChhh
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELH-RGEYELPDGA---------QLTLDILDTSGAYQFPAM 114 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~-~~~~~~~~~~---------~~~~~l~D~~g~~~~~~~ 114 (253)
....++|+|+|++|||||||+++|+++.+...+.+|.. +.. ...+.+ ++. .+.+.+||+||++++...
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 86 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYR-ANGPDGAVGRGQRIHLQLWDTAGLERFRSL 86 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEEC-TTSCCCSSCCCEEEEEEEEEECCSGGGHHH
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEe-cCCcccccccCcEEEEEEEeCCCcHHHHHH
Confidence 45679999999999999999999999888666655555 333 345555 544 789999999999999999
Q ss_pred HHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEec
Q psy549 115 RELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRG-LMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECS 192 (253)
Q Consensus 115 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~S 192 (253)
+..+++.+|++|+|||++++.++..+..|+..+..... .++|+++|+||+|+... .+..+.++.++. ..+++++++|
T Consensus 87 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~S 165 (195)
T 3bc1_A 87 TTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAE-KYGIPYFETS 165 (195)
T ss_dssp HHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHH-HHTCCEEECC
T ss_pred HHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHH-HcCCCEEEEE
Confidence 99999999999999999999999999999988877654 67999999999999764 566677777776 4567999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHhc
Q psy549 193 AKENYNIVQVFKELLAQAKVQY 214 (253)
Q Consensus 193 a~~~~~i~~l~~~l~~~~~~~~ 214 (253)
|+++.|++++|++|.+.+.+..
T Consensus 166 a~~~~~v~~l~~~l~~~~~~~~ 187 (195)
T 3bc1_A 166 AANGTNISHAIEMLLDLIMKRM 187 (195)
T ss_dssp TTTCTTHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999987654
No 61
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=7.7e-30 Score=198.27 Aligned_cols=164 Identities=24% Similarity=0.330 Sum_probs=141.5
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCE
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADA 124 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 124 (253)
....++|+|+|++|+|||||+++|+++.+...+.++.. +.....+.+ ++..+.+.+||+||++++...+..+++.+|+
T Consensus 20 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 98 (192)
T 2fg5_A 20 AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPC-GNELHKFLIWDTAGQERFHSLAPMYYRGSAA 98 (192)
T ss_dssp -CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEEC-SSSEEEEEEEEECCSGGGGGGTHHHHTTCSE
T ss_pred cCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEe-CCEEEEEEEEcCCCchhhHhhhHHhhccCCE
Confidence 45689999999999999999999999987655555555 444556666 6778899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHH
Q psy549 125 FVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVF 203 (253)
Q Consensus 125 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 203 (253)
+|+|||++++.++..+..|+..+......++|+++|+||+|+... .+..+.++.++. ..+++++++||+++.|++++|
T Consensus 99 iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~l~ 177 (192)
T 2fg5_A 99 AVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAE-SIGAIVVETSAKNAINIEELF 177 (192)
T ss_dssp EEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH-TTTCEEEECBTTTTBSHHHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHH-HcCCEEEEEeCCCCcCHHHHH
Confidence 999999999999999999999888876678999999999999763 566677777877 567899999999999999999
Q ss_pred HHHHHHHH
Q psy549 204 KELLAQAK 211 (253)
Q Consensus 204 ~~l~~~~~ 211 (253)
++|.+.+.
T Consensus 178 ~~l~~~i~ 185 (192)
T 2fg5_A 178 QGISRQIP 185 (192)
T ss_dssp HHHHHTCC
T ss_pred HHHHHHHH
Confidence 99988763
No 62
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.97 E-value=8.3e-30 Score=197.48 Aligned_cols=164 Identities=24% Similarity=0.431 Sum_probs=137.5
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCCh-hhHHHhcccCC
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFP-AMRELSISTAD 123 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-~~~~~~~~~~d 123 (253)
....++|+|+|++|||||||+++|+++.+...+..+.. +.....+.+ ++..+.+.+||+||++++. .++..+++.+|
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d 95 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDI-DGERIKIQLWDTAGQERFRKSMVQHYYRNVH 95 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEE-TTEEEEEEEEECCCSHHHHTTTHHHHHTTCC
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEE-CCEEEEEEEEECCCchhhhhhhhHHHhcCCC
Confidence 45679999999999999999999999888665555554 556667777 7778899999999999988 88888999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCC---CC
Q psy549 124 AFVLVYAVDDASTWDVVKDLREQIVNKR-GLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKEN---YN 198 (253)
Q Consensus 124 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~---~~ 198 (253)
++|+|||++++.+|..+..|+..+.... ..++|+++|+||+|+... .+..+..+.++. ..+++++++||+++ .|
T Consensus 96 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-~~~~~~~~~Sa~~~~~~~~ 174 (189)
T 1z06_A 96 AVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFAD-THSMPLFETSAKNPNDNDH 174 (189)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH-HTTCCEEECCSSSGGGGSC
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHH-HcCCEEEEEeCCcCCcccC
Confidence 9999999999999999999998887754 467999999999999765 566777788877 56789999999999 99
Q ss_pred HHHHHHHHHHHHH
Q psy549 199 IVQVFKELLAQAK 211 (253)
Q Consensus 199 i~~l~~~l~~~~~ 211 (253)
+.++|++|++.+.
T Consensus 175 i~~l~~~l~~~i~ 187 (189)
T 1z06_A 175 VEAIFMTLAHKLK 187 (189)
T ss_dssp HHHHHHHHC----
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988764
No 63
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.97 E-value=4.8e-30 Score=198.05 Aligned_cols=164 Identities=25% Similarity=0.382 Sum_probs=140.4
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEE
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFV 126 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 126 (253)
...++|+|+|++|||||||+++|.++.+...+.+|....+...+.+ ++..+.+.+||+||+++|..++..+++.+|++|
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 83 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEI-DTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 83 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC-SSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEE-CCEEEEEEEEECCCChhhhhhHHhhcCCCcEEE
Confidence 4579999999999999999999999998777777777666667777 778899999999999999999999999999999
Q ss_pred EEEECCChhhHHHH-HHHHHHHHHhcCCCCCEEEEEecCCCCC-------------ccccHHHHHHHHHhcCCCcEEEec
Q psy549 127 LVYAVDDASTWDVV-KDLREQIVNKRGLMVPIVVVGNKCELEF-------------KDVRREIAETIALYDWQCGFVECS 192 (253)
Q Consensus 127 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~-------------~~~~~~~~~~~~~~~~~~~~~~~S 192 (253)
+|||++++.+|..+ ..|+..+.... +++|+++|+||+|+.+ ..+..+.+..++......++++||
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 162 (184)
T 1m7b_A 84 ICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS 162 (184)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECB
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEee
Confidence 99999999999988 67887776653 5799999999999974 246667777887744457999999
Q ss_pred cC-CCCCHHHHHHHHHHHHHH
Q psy549 193 AK-ENYNIVQVFKELLAQAKV 212 (253)
Q Consensus 193 a~-~~~~i~~l~~~l~~~~~~ 212 (253)
|+ ++.|++++|+++++.+.+
T Consensus 163 a~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 163 ALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp TTTBHHHHHHHHHHHHHHHHT
T ss_pred ecCCCcCHHHHHHHHHHHHhc
Confidence 99 689999999999998753
No 64
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.97 E-value=2.5e-29 Score=196.80 Aligned_cols=167 Identities=26% Similarity=0.432 Sum_probs=138.7
Q ss_pred CCCCCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccC
Q psy549 43 VGLQKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTA 122 (253)
Q Consensus 43 ~~~~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~ 122 (253)
.++....+||+|+|++|||||||+++|.++.+...+.++....+...+.+ ++..+.+.+||+||++++..++..+++.+
T Consensus 19 ~~m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 97 (201)
T 2gco_A 19 SHMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEV-DGKQVELALWDTAGQEDYDRLRPLSYPDT 97 (201)
T ss_dssp ---CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEE-TTEEEEEEEECCCCSGGGTTTGGGGCTTC
T ss_pred CCCcccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEE-CCEEEEEEEEECCCchhHHHHHHHhcCCC
Confidence 34456789999999999999999999999998777777776555566677 77788999999999999999999999999
Q ss_pred CEEEEEEECCChhhHHHH-HHHHHHHHHhcCCCCCEEEEEecCCCCCc-------------cccHHHHHHHHHhcCCCcE
Q psy549 123 DAFVLVYAVDDASTWDVV-KDLREQIVNKRGLMVPIVVVGNKCELEFK-------------DVRREIAETIALYDWQCGF 188 (253)
Q Consensus 123 d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~-------------~~~~~~~~~~~~~~~~~~~ 188 (253)
|++++|||++++.++..+ ..|+..+.... .++|+++|+||+|+... .+..+.+..++......++
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 176 (201)
T 2gco_A 98 DVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGY 176 (201)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEE
Confidence 999999999999999988 56777666643 57999999999999764 2455666777764444489
Q ss_pred EEeccCCCCCHHHHHHHHHHHHH
Q psy549 189 VECSAKENYNIVQVFKELLAQAK 211 (253)
Q Consensus 189 ~~~Sa~~~~~i~~l~~~l~~~~~ 211 (253)
+++||++|.|++++|++|++.+.
T Consensus 177 ~~~SA~~g~gi~~l~~~i~~~~l 199 (201)
T 2gco_A 177 LECSAKTKEGVREVFEMATRAGL 199 (201)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEeeCCCCCCHHHHHHHHHHHHh
Confidence 99999999999999999998774
No 65
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.97 E-value=8.4e-30 Score=193.14 Aligned_cols=162 Identities=28% Similarity=0.434 Sum_probs=139.5
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEE
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAF 125 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 125 (253)
...++|+|+|++|||||||+++|.++.+...+.++.. +.....+.+ ++..+.+.+||+||++++...+..+++.+|++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 81 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQV-NDEDVRLMLWDTAGQEEFDAITKAYYRGAQAC 81 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEE-TTEEEEEEEECCTTGGGTTCCCHHHHTTCCEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEE-CCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEE
Confidence 3568999999999999999999999888766666654 566667777 77788999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHH
Q psy549 126 VLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFK 204 (253)
Q Consensus 126 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 204 (253)
++|||++++.++..+..|+..+.... .++|+++|+||+|+.+. .+..+.++.++. ..+++++++||+++.|++++|+
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~l~~ 159 (168)
T 1z2a_A 82 VLVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAK-RLKLRFYRTSVKEDLNVSEVFK 159 (168)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHH-HHTCEEEECBTTTTBSSHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCcccccCHHHHHHHHH-HcCCeEEEEecCCCCCHHHHHH
Confidence 99999999999999999998887755 67999999999999764 555666777776 4567999999999999999999
Q ss_pred HHHHHHH
Q psy549 205 ELLAQAK 211 (253)
Q Consensus 205 ~l~~~~~ 211 (253)
+|.+.+.
T Consensus 160 ~l~~~~~ 166 (168)
T 1z2a_A 160 YLAEKHL 166 (168)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998875
No 66
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=1.4e-29 Score=192.47 Aligned_cols=161 Identities=41% Similarity=0.656 Sum_probs=137.2
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEE
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVL 127 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 127 (253)
..++|+++|++|||||||+++|+++.+...+.++....+...+.. ++..+.+.+||+||++++...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 80 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISC-DKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL 80 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEE-TTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEE-CCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence 468999999999999999999999888766666666555566666 7777899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcC--CCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHH
Q psy549 128 VYAVDDASTWDVVKDLREQIVNKRG--LMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFK 204 (253)
Q Consensus 128 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 204 (253)
|||++++.++..+..|+..+..... .++|+++|+||+|+... .+.......++. .++++++++||++|.|++++|+
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~l~~ 159 (172)
T 2erx_A 81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALAR-TWKCAFMETSAKLNHNVKELFQ 159 (172)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHH-HHTCEEEECBTTTTBSHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHH-HhCCeEEEecCCCCcCHHHHHH
Confidence 9999999999988888887776432 46899999999998765 556666677776 5678999999999999999999
Q ss_pred HHHHHH
Q psy549 205 ELLAQA 210 (253)
Q Consensus 205 ~l~~~~ 210 (253)
+|.+.+
T Consensus 160 ~l~~~~ 165 (172)
T 2erx_A 160 ELLNLE 165 (172)
T ss_dssp HHHHTC
T ss_pred HHHHHH
Confidence 998766
No 67
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.97 E-value=5.9e-30 Score=195.97 Aligned_cols=162 Identities=30% Similarity=0.489 Sum_probs=139.7
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEE
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAF 125 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 125 (253)
...++|+|+|++|||||||+++|+++.+...+.++.. +.....+.+ ++..+.+.+||+||++++...+..+++.+|++
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 90 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFRSLIPSYIRDSTVA 90 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGGGGSHHHHHTCSEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEE-CCeEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence 4569999999999999999999999888665555554 666677777 77788999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHH
Q psy549 126 VLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFK 204 (253)
Q Consensus 126 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 204 (253)
++|||++++.++..+..|+..+......++|+++|+||+|+.+. .+..+....+.. ..+++++++||+++.|++++|+
T Consensus 91 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~l~~ 169 (179)
T 2y8e_A 91 VVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAK-ELNVMFIETSAKAGYNVKQLFR 169 (179)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHH-HHTCEEEEEBTTTTBSHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHH-HcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999999998888766678999999999998764 555666666666 4568999999999999999999
Q ss_pred HHHHHH
Q psy549 205 ELLAQA 210 (253)
Q Consensus 205 ~l~~~~ 210 (253)
+|.+.+
T Consensus 170 ~l~~~~ 175 (179)
T 2y8e_A 170 RVAAAL 175 (179)
T ss_dssp HHHHTC
T ss_pred HHHHHH
Confidence 998765
No 68
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.97 E-value=5.8e-29 Score=194.40 Aligned_cols=164 Identities=24% Similarity=0.311 Sum_probs=137.9
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcE----------------------------
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQ---------------------------- 97 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~---------------------------- 97 (253)
...++|+|+|++|||||||+++|++..+...+.++.. +.....+.+ ++..
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNL-NDINIKNNSNNEKNNNINSINDDNNVIITNQH 83 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEET-TC------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEe-cCcccccccccccccccccccccccccccccc
Confidence 4579999999999999999999999988766666654 555555666 4433
Q ss_pred ---------EEEEEEeCCCCCCChhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCC
Q psy549 98 ---------LTLDILDTSGAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEF 168 (253)
Q Consensus 98 ---------~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 168 (253)
+.+.|||+||++++...+..+++.+|++|+|||++++.++..+..|+..+..... +|+++|+||+|+..
T Consensus 84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~piilv~NK~D~~~ 161 (208)
T 3clv_A 84 NNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN--YIIILVANKIDKNK 161 (208)
T ss_dssp -CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--CEEEEEEECTTCC-
T ss_pred ccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC--CcEEEEEECCCccc
Confidence 7899999999999999999999999999999999999999999999988877643 89999999999544
Q ss_pred ccccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHHHHHHHHHHhc
Q psy549 169 KDVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQAKVQY 214 (253)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 214 (253)
..+..+.+..+.. ..+++++++||+++.|++++|++|.+.+.++.
T Consensus 162 ~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 206 (208)
T 3clv_A 162 FQVDILEVQKYAQ-DNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNI 206 (208)
T ss_dssp CCSCHHHHHHHHH-HTTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHH-HcCCcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence 4666677777777 56789999999999999999999999887653
No 69
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=1.4e-29 Score=196.76 Aligned_cols=165 Identities=24% Similarity=0.340 Sum_probs=142.0
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEE
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAF 125 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 125 (253)
...++|+|+|++|||||||+++|++..+...+.++.. +.....+.+ ++..+.+.|||+||++++..++..+++.+|++
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 91 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISV-DGNKAKLAIWDTAGQERFRTLTPSYYRGAQGV 91 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEE-TTEEEEEEEEEECSSGGGCCSHHHHHTTCCEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEE-CCeEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence 4568999999999999999999999988666665554 555566667 77788999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEecCCCCCccccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHH
Q psy549 126 VLVYAVDDASTWDVVKDLREQIVNKR-GLMVPIVVVGNKCELEFKDVRREIAETIALYDWQCGFVECSAKENYNIVQVFK 204 (253)
Q Consensus 126 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 204 (253)
|+|||++++.++..+..|+..+.... ..++|+++|+||+|+....+..+.+..++. ..+++++++||+++.|++++|+
T Consensus 92 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~l~~ 170 (195)
T 1x3s_A 92 ILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFAR-KHSMLFIEASAKTCDGVQCAFE 170 (195)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHH-HTTCEEEECCTTTCTTHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHH-HcCCEEEEecCCCCCCHHHHHH
Confidence 99999999999999999988876643 256899999999999776777777777777 5678999999999999999999
Q ss_pred HHHHHHHHh
Q psy549 205 ELLAQAKVQ 213 (253)
Q Consensus 205 ~l~~~~~~~ 213 (253)
+|.+.+...
T Consensus 171 ~l~~~~~~~ 179 (195)
T 1x3s_A 171 ELVEKIIQT 179 (195)
T ss_dssp HHHHHHHTS
T ss_pred HHHHHHHhh
Confidence 999998654
No 70
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.97 E-value=1.6e-29 Score=199.87 Aligned_cols=166 Identities=26% Similarity=0.358 Sum_probs=121.1
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEE
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAF 125 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 125 (253)
....++|+|+|++|||||||+++|+++.+...+.+|+.+.+...+.+ ++..+.+.+||+||++++..++..+++++|++
T Consensus 31 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 109 (214)
T 2j1l_A 31 GVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQV-KGKPVHLHIWDTAGQDDYDRLRPLFYPDASVL 109 (214)
T ss_dssp -CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEE-TTEEEEEEEEEC---------------CEEEE
T ss_pred CcceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEE-CCEEEEEEEEECCCchhhhHHHHHHhccCCEE
Confidence 34679999999999999999999999888777777777777777777 77888999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHH-HHHHHHHHhcCCCCCEEEEEecCCCCCc-------------cccHHHHHHHHHhcCCCcEEEe
Q psy549 126 VLVYAVDDASTWDVVK-DLREQIVNKRGLMVPIVVVGNKCELEFK-------------DVRREIAETIALYDWQCGFVEC 191 (253)
Q Consensus 126 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~-------------~~~~~~~~~~~~~~~~~~~~~~ 191 (253)
++|||++++.+|..+. .|+..+.... .++|+++|+||+|+... .+..+.+..++......++++|
T Consensus 110 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 188 (214)
T 2j1l_A 110 LLCFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLEC 188 (214)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEe
Confidence 9999999999999986 6887776643 67999999999999764 3455666777773333489999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHh
Q psy549 192 SAKENYNIVQVFKELLAQAKVQ 213 (253)
Q Consensus 192 Sa~~~~~i~~l~~~l~~~~~~~ 213 (253)
||++|.|++++|++|++.+...
T Consensus 189 SA~~g~gi~el~~~l~~~~~~~ 210 (214)
T 2j1l_A 189 SARLHDNVHAVFQEAAEVALSS 210 (214)
T ss_dssp BTTTTBSHHHHHHHHHHHHHHC
T ss_pred cCCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999988653
No 71
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.97 E-value=2e-29 Score=194.27 Aligned_cols=162 Identities=22% Similarity=0.362 Sum_probs=139.2
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEE
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVL 127 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 127 (253)
..++|+|+|++|||||||+++|.++.+...+.+|+.+.+...+.+ ++..+.+++||+||++++...+..+++.+|++++
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 82 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEE-TTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEE-CCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence 468999999999999999999999998877778877777777777 7888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHH-HHHHHHHHhcCCCCCEEEEEecCCCCCc-------------cccHHHHHHHHHhcCCCcEEEecc
Q psy549 128 VYAVDDASTWDVVK-DLREQIVNKRGLMVPIVVVGNKCELEFK-------------DVRREIAETIALYDWQCGFVECSA 193 (253)
Q Consensus 128 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~-------------~~~~~~~~~~~~~~~~~~~~~~Sa 193 (253)
|||++++.++..+. .|+..+.... +++|+++|+||+|+... .+..+.+..++......+++++||
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 161 (186)
T 1mh1_A 83 CFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 161 (186)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHS-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEECCChhhHHHHHHHHHHHHHHhC-CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecC
Confidence 99999999999887 6877777654 47999999999998653 345566677777333349999999
Q ss_pred CCCCCHHHHHHHHHHHHH
Q psy549 194 KENYNIVQVFKELLAQAK 211 (253)
Q Consensus 194 ~~~~~i~~l~~~l~~~~~ 211 (253)
++|.|++++|+++.+.+.
T Consensus 162 ~~g~gi~~l~~~l~~~~~ 179 (186)
T 1mh1_A 162 LTQRGLKTVFDEAIRAVL 179 (186)
T ss_dssp TTCTTHHHHHHHHHHHHS
T ss_pred CCccCHHHHHHHHHHHHh
Confidence 999999999999999884
No 72
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.97 E-value=6.6e-30 Score=199.29 Aligned_cols=173 Identities=23% Similarity=0.256 Sum_probs=130.7
Q ss_pred CCCCCCCCCCcceEEEECCCCCCHHHHHHHHHhCCCCC-CccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHH
Q psy549 39 SGTGVGLQKDKRRVVVMGGARVGKSSIISQFLYDRFIS-RYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMREL 117 (253)
Q Consensus 39 ~~~~~~~~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~ 117 (253)
.....++....++|+|+|++|||||||+++|+++.+.. .+.+|.. .....+. +..+.+.+|||||++++..++..
T Consensus 7 ~~~~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~-~~~~~~~---~~~~~~~i~Dt~G~~~~~~~~~~ 82 (199)
T 4bas_A 7 HHHHMGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVG-YNVETFE---KGRVAFTVFDMGGAKKFRGLWET 82 (199)
T ss_dssp ---------CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSS-EEEEEEE---ETTEEEEEEEECCSGGGGGGGGG
T ss_pred ccccccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccc-eeEEEEE---eCCEEEEEEECCCCHhHHHHHHH
Confidence 33444567788999999999999999999999998866 5666655 2222333 34578999999999999999999
Q ss_pred hcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcC--------CCCCEEEEEecCCCCCccccHHHHHHHHH----hcCC
Q psy549 118 SISTADAFVLVYAVDDASTWDVVKDLREQIVNKRG--------LMVPIVVVGNKCELEFKDVRREIAETIAL----YDWQ 185 (253)
Q Consensus 118 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--------~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~ 185 (253)
+++.+|++|+|||++++.+|..+..|+..+..... .++|+++|+||+|+.......+..+.+.. ...+
T Consensus 83 ~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 162 (199)
T 4bas_A 83 YYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHP 162 (199)
T ss_dssp GCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSC
T ss_pred HHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCe
Confidence 99999999999999999999999888887766311 27899999999999876443444443321 2467
Q ss_pred CcEEEeccCCCCCHHHHHHHHHHHHHHhcc
Q psy549 186 CGFVECSAKENYNIVQVFKELLAQAKVQYN 215 (253)
Q Consensus 186 ~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~ 215 (253)
+++++|||++|.||+++|++|++.+.....
T Consensus 163 ~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~ 192 (199)
T 4bas_A 163 FVIFASNGLKGTGVHEGFSWLQETASRQSG 192 (199)
T ss_dssp EEEEECBTTTTBTHHHHHHHHHHHHHHHC-
T ss_pred eEEEEeeCCCccCHHHHHHHHHHHHHHHhc
Confidence 789999999999999999999999977643
No 73
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.97 E-value=4.4e-30 Score=203.28 Aligned_cols=169 Identities=19% Similarity=0.318 Sum_probs=140.6
Q ss_pred CCCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCc----------EEEEEEEeCCCCCCChh
Q psy549 45 LQKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGA----------QLTLDILDTSGAYQFPA 113 (253)
Q Consensus 45 ~~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~----------~~~~~l~D~~g~~~~~~ 113 (253)
.....++|+|+|++|||||||+++|++..+...+..|.. ++....+.+ ++. .+.+.|||+||++++..
T Consensus 21 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~ 99 (217)
T 2f7s_A 21 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVY-NAQGPNGSSGKAFKVHLQLWDTAGQERFRS 99 (217)
T ss_dssp CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEE-EC-------CCEEEEEEEEEEEESHHHHHH
T ss_pred CcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEE-CCccccccccCceeEEEEEEECCCcHhHHh
Confidence 345679999999999999999999999888665555554 444555666 444 68899999999999999
Q ss_pred hHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEe
Q psy549 114 MRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRG-LMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVEC 191 (253)
Q Consensus 114 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~ 191 (253)
.+..+++.+|++|+|||++++.++..+..|+..+..... .++|+++|+||+|+... .+..+.++.++. ..+++++++
T Consensus 100 ~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~-~~~~~~~~~ 178 (217)
T 2f7s_A 100 LTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELAD-KYGIPYFET 178 (217)
T ss_dssp HHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHH-HTTCCEEEE
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHH-HCCCcEEEE
Confidence 999999999999999999999999998888877655433 57899999999999764 566777778877 567899999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHhcc
Q psy549 192 SAKENYNIVQVFKELLAQAKVQYN 215 (253)
Q Consensus 192 Sa~~~~~i~~l~~~l~~~~~~~~~ 215 (253)
||+++.|++++|++|++.+.+...
T Consensus 179 Sa~~g~gi~~l~~~l~~~i~~~~~ 202 (217)
T 2f7s_A 179 SAATGQNVEKAVETLLDLIMKRME 202 (217)
T ss_dssp BTTTTBTHHHHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHHHhh
Confidence 999999999999999999876543
No 74
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.97 E-value=1.3e-29 Score=200.73 Aligned_cols=170 Identities=20% Similarity=0.280 Sum_probs=141.1
Q ss_pred CCCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCC
Q psy549 45 LQKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTAD 123 (253)
Q Consensus 45 ~~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 123 (253)
.....+||+|+|++|||||||+++|+++.+...+..+.. ......+...++..+.+.+||+||++.+..++..++..+|
T Consensus 7 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 86 (218)
T 4djt_A 7 RRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGAS 86 (218)
T ss_dssp ---CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCS
T ss_pred cccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCC
Confidence 355689999999999999999999999888766666655 3334444443455588999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHH
Q psy549 124 AFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQV 202 (253)
Q Consensus 124 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 202 (253)
++|+|||++++.++..+..|+..+......++|+++|+||+|+... .+..+....++. ..+++++++||++|.|++++
T Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~g~gv~~l 165 (218)
T 4djt_A 87 GAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLK-GKNYEYFEISAKTAHNFGLP 165 (218)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTT-TCCCEEEEEBTTTTBTTTHH
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHH-HcCCcEEEEecCCCCCHHHH
Confidence 9999999999999999999999988877677999999999999876 677777777777 67889999999999999999
Q ss_pred HHHHHHHHHHhcc
Q psy549 203 FKELLAQAKVQYN 215 (253)
Q Consensus 203 ~~~l~~~~~~~~~ 215 (253)
|++|++.+.....
T Consensus 166 ~~~l~~~~~~~~~ 178 (218)
T 4djt_A 166 FLHLARIFTGRPD 178 (218)
T ss_dssp HHHHHHHHHCCTT
T ss_pred HHHHHHHHhcccc
Confidence 9999999876543
No 75
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.97 E-value=7.9e-30 Score=195.99 Aligned_cols=162 Identities=24% Similarity=0.395 Sum_probs=123.7
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEE
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFV 126 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 126 (253)
...++|+|+|++|+|||||+++|.++.+...+.+|+.+.+...+.+ ++..+.+++||+||++++...+..+++++|+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 84 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV-NGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI 84 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC--------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEE-CCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence 3569999999999999999999999988777777777666555556 667788999999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHHhcCCCCCEEEEEecCCCCCcc-----------ccHHHHHHHHHhcCCCcEEEeccC
Q psy549 127 LVYAVDDASTWDVVK-DLREQIVNKRGLMVPIVVVGNKCELEFKD-----------VRREIAETIALYDWQCGFVECSAK 194 (253)
Q Consensus 127 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~~~~~Sa~ 194 (253)
+|||++++.++..+. .|+..+.... .++|+++|+||+|+.+.. +..+.+..++......+++++||+
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 163 (182)
T 3bwd_D 85 LAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSK 163 (182)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECC
Confidence 999999999999987 6888777654 479999999999987642 356667777774443589999999
Q ss_pred CCCCHHHHHHHHHHHH
Q psy549 195 ENYNIVQVFKELLAQA 210 (253)
Q Consensus 195 ~~~~i~~l~~~l~~~~ 210 (253)
+|.|++++|++|++.+
T Consensus 164 ~~~gi~~l~~~l~~~i 179 (182)
T 3bwd_D 164 SQENVKGVFDAAIRVV 179 (182)
T ss_dssp TCTTHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999999876
No 76
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.97 E-value=7e-29 Score=192.98 Aligned_cols=165 Identities=25% Similarity=0.372 Sum_probs=131.7
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhC--CCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCC-ChhhHHHhcccCCE
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYD--RFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQ-FPAMRELSISTADA 124 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-~~~~~~~~~~~~d~ 124 (253)
..+||+|+|++|||||||+++|.+. .+...+..+..+.+...+.+ ++..+.+.+||++|.+. +..+...+++.+|+
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~ 83 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMV-DGESATIILLDMWENKGENEWLHDHCMQVGDA 83 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEE-TTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEE-CCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence 4689999999999999999999963 34555555555666777777 88888999999999876 45566678889999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHH
Q psy549 125 FVLVYAVDDASTWDVVKDLREQIVNKR-GLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQV 202 (253)
Q Consensus 125 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 202 (253)
+++|||+++..+|..+..|+..+.... ..++|+++|+||+|+... .+..+.+..++. ..++++++|||++|.||+++
T Consensus 84 ~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~-~~~~~~~e~SA~~g~~v~~l 162 (192)
T 2cjw_A 84 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAV-VFDXKFIETSAAVQHNVKEL 162 (192)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHH-HTTCEEEECBTTTTBSHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHH-HhCCceEEeccccCCCHHHH
Confidence 999999999999999999988777643 357999999999998754 556666667766 56789999999999999999
Q ss_pred HHHHHHHHHHhc
Q psy549 203 FKELLAQAKVQY 214 (253)
Q Consensus 203 ~~~l~~~~~~~~ 214 (253)
|+++++.+....
T Consensus 163 f~~l~~~~~~~~ 174 (192)
T 2cjw_A 163 FEGIVRQVRLRR 174 (192)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhc
Confidence 999999886553
No 77
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=7.8e-29 Score=194.85 Aligned_cols=164 Identities=27% Similarity=0.421 Sum_probs=132.9
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEE
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFV 126 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 126 (253)
...++|+|+|++|||||||+++|.++.+...+.+++...+...+.+ ++..+.+.+||+||++++...+..+++.+|++|
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEV-DGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEE-TTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEE-CCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 4578999999999999999999999998777777776666566667 777889999999999999999999999999999
Q ss_pred EEEECCChhhHHHH-HHHHHHHHHhcCCCCCEEEEEecCCCCCc-------------cccHHHHHHHHHhcCCCcEEEec
Q psy549 127 LVYAVDDASTWDVV-KDLREQIVNKRGLMVPIVVVGNKCELEFK-------------DVRREIAETIALYDWQCGFVECS 192 (253)
Q Consensus 127 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~-------------~~~~~~~~~~~~~~~~~~~~~~S 192 (253)
+|||++++.++..+ ..|+..+.... +++|+++|+||+|+... .+..+.+..++......+++++|
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 180 (207)
T 2fv8_A 102 MCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECS 180 (207)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEee
Confidence 99999999999988 56777766643 57999999999998754 24555666777633334899999
Q ss_pred cCCCCCHHHHHHHHHHHHHH
Q psy549 193 AKENYNIVQVFKELLAQAKV 212 (253)
Q Consensus 193 a~~~~~i~~l~~~l~~~~~~ 212 (253)
|++|.|++++|++|.+.+..
T Consensus 181 A~~g~gi~el~~~l~~~i~~ 200 (207)
T 2fv8_A 181 AKTKEGVREVFETATRAALQ 200 (207)
T ss_dssp TTTCTTHHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999998854
No 78
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.96 E-value=1.5e-29 Score=198.51 Aligned_cols=167 Identities=24% Similarity=0.306 Sum_probs=109.4
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhC--CCCCCccccce-eeeeeeEEcCCCc--EEEEEEEeCCCCCCChhhHHHhccc
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYD--RFISRYKETVE-ELHRGEYELPDGA--QLTLDILDTSGAYQFPAMRELSIST 121 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~--~~~~~~~~t~~-~~~~~~~~~~~~~--~~~~~l~D~~g~~~~~~~~~~~~~~ 121 (253)
...++|+|+|++|||||||+++|+++ .+...+.+|+. +.....+.+ ++. .+.+.+||+||++++...+..+++.
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 96 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTI-PDTTVSVELFLLDTAGSDLYKEQISQYWNG 96 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEEC-TTSSEEEEEEEEETTTTHHHHHHHSTTCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEE-CCcccEEEEEEEECCCcHHHHHHHHHHHhh
Confidence 45689999999999999999999998 77777777775 677778888 665 7899999999999999999999999
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHHhcC---CCCCEEEEEecCCCCC-c-cccHHHHHHHHHhcCCCcEEEeccCC-
Q psy549 122 ADAFVLVYAVDDASTWDVVKDLREQIVNKRG---LMVPIVVVGNKCELEF-K-DVRREIAETIALYDWQCGFVECSAKE- 195 (253)
Q Consensus 122 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~-~-~~~~~~~~~~~~~~~~~~~~~~Sa~~- 195 (253)
+|++|+|||++++.+|..+..|+..+..... .++|+++|+||+|+.. . .+..+.+..++. ..+++++++||++
T Consensus 97 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~-~~~~~~~~~Sa~~~ 175 (208)
T 2yc2_C 97 VYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWAT-TNTLDFFDVSANPP 175 (208)
T ss_dssp CCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHH-HTTCEEEECCC---
T ss_pred CcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHH-HcCCEEEEeccCCC
Confidence 9999999999999999999999999888765 5799999999999986 3 666677777777 5678999999999
Q ss_pred CCCHHHHHHHHHHHHHHhcc
Q psy549 196 NYNIVQVFKELLAQAKVQYN 215 (253)
Q Consensus 196 ~~~i~~l~~~l~~~~~~~~~ 215 (253)
+.|++++|++|++.+.....
T Consensus 176 ~~gi~~l~~~i~~~~~~~~~ 195 (208)
T 2yc2_C 176 GKDADAPFLSIATTFYRNYE 195 (208)
T ss_dssp ----CHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHH
Confidence 99999999999998876543
No 79
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.96 E-value=1.8e-29 Score=195.52 Aligned_cols=169 Identities=22% Similarity=0.259 Sum_probs=129.4
Q ss_pred CCCCCCCCCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHh
Q psy549 39 SGTGVGLQKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELS 118 (253)
Q Consensus 39 ~~~~~~~~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~ 118 (253)
.+.........++|+|+|++|||||||+++|+++.+...+.+|....+. .+.. ..+.+.+||+||++++...+..+
T Consensus 12 ~~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~---~~~~~~l~Dt~G~~~~~~~~~~~ 87 (188)
T 1zd9_A 12 SGLVPRGSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR-KITK---GNVTIKLWDIGGQPRFRSMWERY 87 (188)
T ss_dssp -------CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE-EEEE---TTEEEEEEEECCSHHHHTTHHHH
T ss_pred ccccccCCCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE-EEEe---CCEEEEEEECCCCHhHHHHHHHH
Confidence 3333444567899999999999999999999998887666555553332 2333 34788999999999999999999
Q ss_pred cccCCEEEEEEECCChhhHHHHHHHHHHHHHh-cCCCCCEEEEEecCCCCCccccHHHHHHHHHh---cCCCcEEEeccC
Q psy549 119 ISTADAFVLVYAVDDASTWDVVKDLREQIVNK-RGLMVPIVVVGNKCELEFKDVRREIAETIALY---DWQCGFVECSAK 194 (253)
Q Consensus 119 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~ 194 (253)
++.+|++|+|||++++.++..+..|+..+... ...++|+++|+||+|+.......+..+.+... ....++++|||+
T Consensus 88 ~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~ 167 (188)
T 1zd9_A 88 CRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCK 167 (188)
T ss_dssp HTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTT
T ss_pred HccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEECC
Confidence 99999999999999999999988888877653 23679999999999997653333333433321 235678999999
Q ss_pred CCCCHHHHHHHHHHHHH
Q psy549 195 ENYNIVQVFKELLAQAK 211 (253)
Q Consensus 195 ~~~~i~~l~~~l~~~~~ 211 (253)
+|.|++++|++|++.+.
T Consensus 168 ~g~gv~~l~~~l~~~~~ 184 (188)
T 1zd9_A 168 EKDNIDITLQWLIQHSK 184 (188)
T ss_dssp TCTTHHHHHHHHHHTCC
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999988763
No 80
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.96 E-value=1.3e-28 Score=191.39 Aligned_cols=165 Identities=18% Similarity=0.168 Sum_probs=130.0
Q ss_pred CCCCcceEEEECCCCCCHHHHHHHHHhCCCCCCcc-----------ccce-eeeeeeE-EcCCCcEEEEEEEeCCCCCCC
Q psy549 45 LQKDKRRVVVMGGARVGKSSIISQFLYDRFISRYK-----------ETVE-ELHRGEY-ELPDGAQLTLDILDTSGAYQF 111 (253)
Q Consensus 45 ~~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~-----------~t~~-~~~~~~~-~~~~~~~~~~~l~D~~g~~~~ 111 (253)
.....+||+|+|++|||||||++++.+. +...+. +|.. +.....+ .+ ++..+.+++|||||++++
T Consensus 10 ~~~~~~ki~vvG~~~~GKssL~~~l~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~ 87 (198)
T 3t1o_A 10 NREINFKIVYYGPGLSGKTTNLKWIYSK-VPEGRKGEMVSLATEDERTLFFDFLPLDIGEV-KGFKTRFHLYTVPGQVFY 87 (198)
T ss_dssp TTEEEEEEEEECSTTSSHHHHHHHHHHT-SCGGGBCCCEEEECSSCEEEEEEECCSSCCCS-SSCEEEEEEEECCSCCSC
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHhh-ccccccccccccccccccceeeeecccccccc-cCCceEEEEEeCCChHHH
Confidence 3456799999999999999999766554 333322 2332 3333444 44 777899999999999999
Q ss_pred hhhHHHhcccCCEEEEEEECC------ChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHHhcCC
Q psy549 112 PAMRELSISTADAFVLVYAVD------DASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIALYDWQ 185 (253)
Q Consensus 112 ~~~~~~~~~~~d~~i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 185 (253)
..++..+++++|++|+|||++ +..+|..+..|+..+. ....++|+++|+||+|+.+. +..+.++.++. ..+
T Consensus 88 ~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~-~~~~~~piilv~NK~Dl~~~-~~~~~~~~~~~-~~~ 164 (198)
T 3t1o_A 88 NASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG-LTLDDVPIVIQVNKRDLPDA-LPVEMVRAVVD-PEG 164 (198)
T ss_dssp SHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT-CCTTSSCEEEEEECTTSTTC-CCHHHHHHHHC-TTC
T ss_pred HHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc-cccCCCCEEEEEEchhcccc-cCHHHHHHHHH-hcC
Confidence 999999999999999999999 4566767777776652 23467999999999999774 66666777776 456
Q ss_pred C-cEEEeccCCCCCHHHHHHHHHHHHHHhc
Q psy549 186 C-GFVECSAKENYNIVQVFKELLAQAKVQY 214 (253)
Q Consensus 186 ~-~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 214 (253)
+ +++++||++|.|++++|++|++.+....
T Consensus 165 ~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~ 194 (198)
T 3t1o_A 165 KFPVLEAVATEGKGVFETLKEVSRLVLARV 194 (198)
T ss_dssp CSCEEECBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred CceEEEEecCCCcCHHHHHHHHHHHHHHHh
Confidence 6 9999999999999999999999987764
No 81
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.96 E-value=3.2e-28 Score=188.63 Aligned_cols=164 Identities=17% Similarity=0.222 Sum_probs=128.4
Q ss_pred CCCCCcceEEEECCCCCCHHHHHHHHHhCC-CCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccC
Q psy549 44 GLQKDKRRVVVMGGARVGKSSIISQFLYDR-FISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTA 122 (253)
Q Consensus 44 ~~~~~~~~I~iiG~~~~GKSsLi~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~ 122 (253)
......++|+|+|++|||||||+++|.+.. +...+..|.. .....+.+ ++ +.+.+||+||++++...+..+++++
T Consensus 16 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~-~~~~~~~~-~~--~~~~l~Dt~G~~~~~~~~~~~~~~~ 91 (190)
T 2h57_A 16 PRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG-FSIEKFKS-SS--LSFTVFDMSGQGRYRNLWEHYYKEG 91 (190)
T ss_dssp -----CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS-EEEEEEEC-SS--CEEEEEEECCSTTTGGGGGGGGGGC
T ss_pred cCCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc-eeEEEEEE-CC--EEEEEEECCCCHHHHHHHHHHHhcC
Confidence 345678999999999999999999999887 4555554443 55556666 43 5789999999999999999999999
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHhcC---CCCCEEEEEecCCCCCccccHHHHHHHHHh---cCCCcEEEeccCCC
Q psy549 123 DAFVLVYAVDDASTWDVVKDLREQIVNKRG---LMVPIVVVGNKCELEFKDVRREIAETIALY---DWQCGFVECSAKEN 196 (253)
Q Consensus 123 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~ 196 (253)
|++|+|||++++.+|..+..|+..+..... .++|+++|+||+|+.......+..+.+... ..+++++++||++|
T Consensus 92 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 171 (190)
T 2h57_A 92 QAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKG 171 (190)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEccCCCC
Confidence 999999999999999999889888777533 479999999999997643333333333211 23568999999999
Q ss_pred CCHHHHHHHHHHHHH
Q psy549 197 YNIVQVFKELLAQAK 211 (253)
Q Consensus 197 ~~i~~l~~~l~~~~~ 211 (253)
.|++++|++|.+.+.
T Consensus 172 ~gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 172 EGLQEGVDWLQDQIQ 186 (190)
T ss_dssp BTHHHHHHHHHHHC-
T ss_pred cCHHHHHHHHHHHHH
Confidence 999999999998774
No 82
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.96 E-value=4e-29 Score=198.42 Aligned_cols=168 Identities=22% Similarity=0.362 Sum_probs=139.7
Q ss_pred CCCCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccC
Q psy549 44 GLQKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTA 122 (253)
Q Consensus 44 ~~~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~ 122 (253)
......+||+|+|++|||||||+++|+.+.+...+..+.. +.....+.+ ++..+.+.+|||||++.+..++..+++++
T Consensus 10 ~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 88 (221)
T 3gj0_A 10 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT-NRGPIKFNVWDTAGQEKFGGLRDGYYIQA 88 (221)
T ss_dssp TCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEE-TTEEEEEEEEEECSGGGTSCCCHHHHTTC
T ss_pred CCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEeCCChHHHhHHHHHHHhcC
Confidence 3456779999999999999999999887776655555554 555556666 77789999999999999999999999999
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHHhcCCCcEEEeccCCCCCHHHH
Q psy549 123 DAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIALYDWQCGFVECSAKENYNIVQV 202 (253)
Q Consensus 123 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 202 (253)
|++++|||++++.+|..+..|+..+.... .++|+++|+||+|+.+..... ....++. ..++++++|||++|.|++++
T Consensus 89 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~-~~~~~~~-~~~~~~~~~Sa~~~~gi~~l 165 (221)
T 3gj0_A 89 QCAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKVKA-KSIVFHR-KKNLQYYDISAKSNYNFEKP 165 (221)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHHHS-TTCCEEEEEECTTSSSCSSCG-GGCCHHH-HHTCEEEECBGGGTBTTTHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCccccccccH-HHHHHHH-HcCCEEEEEeCCCCCCHHHH
Confidence 99999999999999999999999888764 579999999999998764443 3333444 45679999999999999999
Q ss_pred HHHHHHHHHHhcc
Q psy549 203 FKELLAQAKVQYN 215 (253)
Q Consensus 203 ~~~l~~~~~~~~~ 215 (253)
|++|++.+.....
T Consensus 166 ~~~l~~~l~~~~~ 178 (221)
T 3gj0_A 166 FLWLARKLIGDPN 178 (221)
T ss_dssp HHHHHHHHHTCTT
T ss_pred HHHHHHHHHhCcc
Confidence 9999999876543
No 83
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.96 E-value=8.3e-31 Score=204.85 Aligned_cols=165 Identities=29% Similarity=0.421 Sum_probs=131.0
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCE
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADA 124 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 124 (253)
....+||+|+|++|||||||+++|+++.+...+..+.. +.....+.+ ++..+.+.+||+||++++...+..+++.+|+
T Consensus 30 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 108 (199)
T 3l0i_B 30 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTITSSYYRGAHG 108 (199)
T ss_dssp CSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEE-TTEEEEEEEECCTTCTTCCCCSCC--CCCSE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEE-CCEEEEEEEEECCCcHhHHHHHHHHhhcCCE
Confidence 34579999999999999999999999887665555544 566667777 7778899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHH
Q psy549 125 FVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVF 203 (253)
Q Consensus 125 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 203 (253)
+|+|||++++.+|..+..|+..+......++|+++|+||+|+... .+..+.++.++. ..+++++++||+++.|++++|
T Consensus 109 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~-~~~~~~~~vSA~~g~gv~~l~ 187 (199)
T 3l0i_B 109 IIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFAD-SLGIPFLETSAKNATNVEQSF 187 (199)
T ss_dssp EEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHH-TTTCCBCCCCC---HHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHH-HcCCeEEEEECCCCCCHHHHH
Confidence 999999999999999999999887766668999999999998765 344445566666 667899999999999999999
Q ss_pred HHHHHHHHH
Q psy549 204 KELLAQAKV 212 (253)
Q Consensus 204 ~~l~~~~~~ 212 (253)
++|++.+..
T Consensus 188 ~~l~~~l~~ 196 (199)
T 3l0i_B 188 MTMAAEIKK 196 (199)
T ss_dssp HHHTTTTTT
T ss_pred HHHHHHHHH
Confidence 999887643
No 84
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=8.7e-28 Score=185.74 Aligned_cols=160 Identities=16% Similarity=0.237 Sum_probs=125.2
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEE
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFV 126 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 126 (253)
...++|+|+|++|||||||+++|.++.+. .+.+|.. .....+.+ ++ +.+.+||+||++++...+..+++++|+++
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~-~~~~~~~~-~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 88 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIG-SNVEEIVI-NN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI 88 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSC-SSCEEEEE-TT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCc-cceEEEEE-CC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 35699999999999999999999988876 4444443 34445555 43 78899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEecCCCCCccccHHHHHHHHHh---cCCCcEEEeccCCCCCHHHH
Q psy549 127 LVYAVDDASTWDVVKDLREQIVNKR-GLMVPIVVVGNKCELEFKDVRREIAETIALY---DWQCGFVECSAKENYNIVQV 202 (253)
Q Consensus 127 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~~~i~~l 202 (253)
+|||++++.+|..+..|+..+.... ..++|+++|+||+|+.+.....+..+.+... ..+++++++||++|.|++++
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 168 (187)
T 1zj6_A 89 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQG 168 (187)
T ss_dssp EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHH
Confidence 9999999999999999988877642 3579999999999998643334444444321 34568999999999999999
Q ss_pred HHHHHHHHH
Q psy549 203 FKELLAQAK 211 (253)
Q Consensus 203 ~~~l~~~~~ 211 (253)
|++|++.+.
T Consensus 169 ~~~l~~~~~ 177 (187)
T 1zj6_A 169 LEWMMSRLK 177 (187)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 999998873
No 85
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.96 E-value=7.5e-28 Score=181.84 Aligned_cols=157 Identities=13% Similarity=0.201 Sum_probs=123.8
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEEE
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLVY 129 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 129 (253)
+||+++|++|||||||+++|.++.+... .+|.. .....+.. ..+.+.+||+||++++...+..+++++|++++||
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~-~~t~~-~~~~~~~~---~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 75 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG-FNVETVEY---KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCC-CCCSS-CCEEEEEC---SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCcc-cCcCc-eeEEEEEE---CCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence 5899999999999999999998887543 33433 33344444 3368899999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHh-cCCCCCEEEEEecCCCCCccccHHHHHHHHHh---cCCCcEEEeccCCCCCHHHHHHH
Q psy549 130 AVDDASTWDVVKDLREQIVNK-RGLMVPIVVVGNKCELEFKDVRREIAETIALY---DWQCGFVECSAKENYNIVQVFKE 205 (253)
Q Consensus 130 d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~~~i~~l~~~ 205 (253)
|++++.+|..+..|+..+... ...++|+++|+||+|+.+.....+..+.+... ..++++++|||++|.|++++|++
T Consensus 76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 155 (164)
T 1r8s_A 76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDW 155 (164)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHH
Confidence 999999999988888877653 33578999999999997753333343433321 13457999999999999999999
Q ss_pred HHHHHH
Q psy549 206 LLAQAK 211 (253)
Q Consensus 206 l~~~~~ 211 (253)
|++.+.
T Consensus 156 l~~~i~ 161 (164)
T 1r8s_A 156 LSNQLR 161 (164)
T ss_dssp HHHHC-
T ss_pred HHHHHh
Confidence 998774
No 86
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.96 E-value=2.1e-27 Score=180.52 Aligned_cols=161 Identities=17% Similarity=0.229 Sum_probs=128.4
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEE
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFV 126 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 126 (253)
...++|+|+|++|+|||||+++|.++.+.. +.+|. ......+.+ + .+.+.+||+||++++...+..+++.+|+++
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~-~~~~~~~~~-~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 79 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTI-GFNVETVTY-K--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVI 79 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCS-SEEEEEEEE-T--TEEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcC-ccceEEEEE-C--CEEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence 456999999999999999999999988754 33333 333445555 3 368899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEecCCCCCccccHHHHHHHHHh---cCCCcEEEeccCCCCCHHHH
Q psy549 127 LVYAVDDASTWDVVKDLREQIVNKR-GLMVPIVVVGNKCELEFKDVRREIAETIALY---DWQCGFVECSAKENYNIVQV 202 (253)
Q Consensus 127 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~~~i~~l 202 (253)
+|||++++.+|..+..|+..+.... ..++|+++|+||+|+.+.....+..+.+... ..+++++++||++|.|++++
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 159 (171)
T 1upt_A 80 YVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEA 159 (171)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCcCHHHH
Confidence 9999999999999888887776532 2578999999999998754334444444321 23568999999999999999
Q ss_pred HHHHHHHHHH
Q psy549 203 FKELLAQAKV 212 (253)
Q Consensus 203 ~~~l~~~~~~ 212 (253)
|++|++.+.+
T Consensus 160 ~~~l~~~i~~ 169 (171)
T 1upt_A 160 MEWLVETLKS 169 (171)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhh
Confidence 9999998854
No 87
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.95 E-value=5.1e-28 Score=188.99 Aligned_cols=157 Identities=17% Similarity=0.228 Sum_probs=119.4
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEE
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFV 126 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 126 (253)
...++|+++|++|||||||+++|.++.+. .+.+|... ....+.+ ++ +.+.+|||||++++...+..+++.+|+++
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~-~~~~~~~-~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 97 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHP-TSEELTI-AG--MTFTTFDLGGHIQARRVWKNYLPAINGIV 97 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCC-SCEEEEE-TT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCc-eeEEEEE-CC--EEEEEEECCCcHhhHHHHHHHHhcCCEEE
Confidence 45689999999999999999999988764 23334332 3456666 44 78999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHh-cCCCCCEEEEEecCCCCCccccHHHHHHHHHh----------------cCCCcEE
Q psy549 127 LVYAVDDASTWDVVKDLREQIVNK-RGLMVPIVVVGNKCELEFKDVRREIAETIALY----------------DWQCGFV 189 (253)
Q Consensus 127 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~----------------~~~~~~~ 189 (253)
+|||++++.+|..+..|+..+... ...++|+++|+||+|+.+ .+..+.+..+... ...++++
T Consensus 98 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (198)
T 1f6b_A 98 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE-AISEERLREMFGLYGQTTGKGSVSLKELNARPLEVF 176 (198)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT-CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc-cCCHHHHHHHhCcccccccccccccccccCceEEEE
Confidence 999999999999999998887763 235799999999999976 4444444444331 1356799
Q ss_pred EeccCCCCCHHHHHHHHHHH
Q psy549 190 ECSAKENYNIVQVFKELLAQ 209 (253)
Q Consensus 190 ~~Sa~~~~~i~~l~~~l~~~ 209 (253)
+|||++|.|++++|++|++.
T Consensus 177 ~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 177 MCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp ECBTTTTBSHHHHHHHHHTT
T ss_pred EEECCCCCCHHHHHHHHHHh
Confidence 99999999999999999764
No 88
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.95 E-value=3.6e-28 Score=187.01 Aligned_cols=162 Identities=15% Similarity=0.217 Sum_probs=123.9
Q ss_pred CCCCCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccC
Q psy549 43 VGLQKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTA 122 (253)
Q Consensus 43 ~~~~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~ 122 (253)
.......++|+|+|++|||||||+++|.++.+ ..+..|.. .....+.+ ++ +.+.+||+||++++...+..+++.+
T Consensus 15 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~-~~~~~~~~-~~--~~~~i~Dt~G~~~~~~~~~~~~~~~ 89 (181)
T 2h17_A 15 VPRGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIG-SNVEEIVI-NN--TRFLMWDIGGQESLRSSWNTYYTNT 89 (181)
T ss_dssp ------CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSS-SSCEEEEE-TT--EEEEEEEESSSGGGTCGGGGGGTTC
T ss_pred cCCCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCc-eeeEEEEE-CC--EEEEEEECCCCHhHHHHHHHHhccC
Confidence 33456779999999999999999999999887 33333333 33345555 43 7899999999999999999999999
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEecCCCCCccccHHHHHHHHH---hcCCCcEEEeccCCCCC
Q psy549 123 DAFVLVYAVDDASTWDVVKDLREQIVNKR-GLMVPIVVVGNKCELEFKDVRREIAETIAL---YDWQCGFVECSAKENYN 198 (253)
Q Consensus 123 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~~~ 198 (253)
|++++|||++++.+|..+..|+..+.... ..++|+++|+||+|+.......+..+.+.. ...+++++++||++|.|
T Consensus 90 d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~g 169 (181)
T 2h17_A 90 EFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEG 169 (181)
T ss_dssp CEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEccCCCCcC
Confidence 99999999999999999888888776532 367999999999999764333333333322 12355899999999999
Q ss_pred HHHHHHHHHHH
Q psy549 199 IVQVFKELLAQ 209 (253)
Q Consensus 199 i~~l~~~l~~~ 209 (253)
++++|++|++.
T Consensus 170 i~~l~~~l~~~ 180 (181)
T 2h17_A 170 LCQGLEWMMSR 180 (181)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHhh
Confidence 99999998764
No 89
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.95 E-value=8.7e-28 Score=184.99 Aligned_cols=161 Identities=16% Similarity=0.254 Sum_probs=124.9
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEE
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFV 126 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 126 (253)
...++|+++|++|||||||+++|.+..+. .+.+|.. .....+.+ + .+.+.+||+||++.+...+..+++.+|+++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g-~~~~~~~~-~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 88 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQG-FNIKSVQS-Q--GFKLNVWDIGGQRKIRPYWRSYFENTDILI 88 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETT-EEEEEEEE-T--TEEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCC-eEEEEEEE-C--CEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 45699999999999999999999987652 2333333 33344555 4 368899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHh-cCCCCCEEEEEecCCCCCccccHHHHHHHHHh---cCCCcEEEeccCCCCCHHHH
Q psy549 127 LVYAVDDASTWDVVKDLREQIVNK-RGLMVPIVVVGNKCELEFKDVRREIAETIALY---DWQCGFVECSAKENYNIVQV 202 (253)
Q Consensus 127 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~~~i~~l 202 (253)
+|||++++.+|..+..|+..+... ...++|+++|+||+|+.+.....+..+.+... ...+++++|||++|.|++++
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 168 (181)
T 1fzq_A 89 YVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDG 168 (181)
T ss_dssp EEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEEccCCCCCCHHHH
Confidence 999999999999988888776553 23578999999999998754333333333221 23567999999999999999
Q ss_pred HHHHHHHHHH
Q psy549 203 FKELLAQAKV 212 (253)
Q Consensus 203 ~~~l~~~~~~ 212 (253)
|++|++.+.+
T Consensus 169 ~~~l~~~~~~ 178 (181)
T 1fzq_A 169 MNWVCKNVNA 178 (181)
T ss_dssp HHHHHHTC--
T ss_pred HHHHHHHHHh
Confidence 9999987743
No 90
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.95 E-value=9.3e-28 Score=186.29 Aligned_cols=157 Identities=16% Similarity=0.233 Sum_probs=124.1
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEE
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFV 126 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 126 (253)
.+.++|+++|++|||||||+++|.++.+.. +.+|.. .....+.+ ++ +.+.+||+||++++...+..+++.+|+++
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~-~~~t~~-~~~~~~~~-~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 95 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWH-PTSEELAI-GN--IKFTTFDLGGHIQARRLWKDYFPEVNGIV 95 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCCS-CEEEEEEE-TT--EEEEEEECCCSGGGTTSGGGGCTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCc-cccCCC-CCeEEEEE-CC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence 456899999999999999999999988743 333333 34556666 54 78999999999999999989999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHh-cCCCCCEEEEEecCCCCCccccHHHHHHHHHh-----------cCCCcEEEeccC
Q psy549 127 LVYAVDDASTWDVVKDLREQIVNK-RGLMVPIVVVGNKCELEFKDVRREIAETIALY-----------DWQCGFVECSAK 194 (253)
Q Consensus 127 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----------~~~~~~~~~Sa~ 194 (253)
+|||++++.+|..+..|+..+... ...++|+++|+||+|+.. .+..+........ ...+++++|||+
T Consensus 96 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 174 (190)
T 1m2o_B 96 FLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN-AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVV 174 (190)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT-CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTT
T ss_pred EEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC-CCCHHHHHHHhCCccccccccccccceEEEEEeECC
Confidence 999999999999999998887653 236799999999999987 3444434333221 245689999999
Q ss_pred CCCCHHHHHHHHHHH
Q psy549 195 ENYNIVQVFKELLAQ 209 (253)
Q Consensus 195 ~~~~i~~l~~~l~~~ 209 (253)
+|.|++++|++|++.
T Consensus 175 ~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 175 MRNGYLEAFQWLSQY 189 (190)
T ss_dssp TTBSHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHhh
Confidence 999999999998753
No 91
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.95 E-value=1.3e-27 Score=184.39 Aligned_cols=162 Identities=17% Similarity=0.230 Sum_probs=129.0
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEE
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFV 126 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 126 (253)
...++|+++|++|||||||+++|.++. ...+.+|.. .....+.+ + .+.+.+|||||++++...+..+++++|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~-~~~~~~~~-~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 90 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLG-FNIKTLEH-R--GFKLNIWDVGGQKSLRSYWRNYFESTDGLI 90 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSS-EEEEEEEE-T--TEEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCc-cceEEEEE-C--CEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 467999999999999999999999887 445555544 33445555 3 368899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHh-cCCCCCEEEEEecCCCCCccccHHHHHHHHHh---cCCCcEEEeccCCCCCHHHH
Q psy549 127 LVYAVDDASTWDVVKDLREQIVNK-RGLMVPIVVVGNKCELEFKDVRREIAETIALY---DWQCGFVECSAKENYNIVQV 202 (253)
Q Consensus 127 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~~~i~~l 202 (253)
+|||++++.++..+..|+..+... ...++|+++|+||+|+.+.....+..+.+... ..+++++++||++|.|++++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 170 (186)
T 1ksh_A 91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPG 170 (186)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEeeCCCCCCHHHH
Confidence 999999999999988888877663 23579999999999997753333333433321 24568999999999999999
Q ss_pred HHHHHHHHHHh
Q psy549 203 FKELLAQAKVQ 213 (253)
Q Consensus 203 ~~~l~~~~~~~ 213 (253)
|++|.+.+.+.
T Consensus 171 ~~~l~~~i~~~ 181 (186)
T 1ksh_A 171 IDWLLDDISSR 181 (186)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHhc
Confidence 99999988543
No 92
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.95 E-value=9.2e-28 Score=187.14 Aligned_cols=170 Identities=16% Similarity=0.148 Sum_probs=119.1
Q ss_pred CCCCCCCCCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhH---
Q psy549 39 SGTGVGLQKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMR--- 115 (253)
Q Consensus 39 ~~~~~~~~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~--- 115 (253)
.+....+....+||+|+|++|||||||++++.+....................+.++..+.+++||++|+++|....
T Consensus 10 ~~~~~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~ 89 (196)
T 3llu_A 10 GRENLYFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDY 89 (196)
T ss_dssp ----------CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCH
T ss_pred CCCCCcccCcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhc
Confidence 33444566788999999999999999999887754332111111122222223324566889999999999988777
Q ss_pred HHhcccCCEEEEEEECCCh--hhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc--------cccHHHHHHHHHh---
Q psy549 116 ELSISTADAFVLVYAVDDA--STWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK--------DVRREIAETIALY--- 182 (253)
Q Consensus 116 ~~~~~~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--------~~~~~~~~~~~~~--- 182 (253)
..+++++|++|+|||++++ +++..+..|+..+.. ...++|+++|+||+|+.+. .+..+..+.++..
T Consensus 90 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~ 168 (196)
T 3llu_A 90 EMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYK-VNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLE 168 (196)
T ss_dssp HHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHH-HCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCT
T ss_pred ccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHh-cCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhh
Confidence 7899999999999999997 566666667666543 3367999999999998763 3334445555552
Q ss_pred cCCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy549 183 DWQCGFVECSAKENYNIVQVFKELLAQA 210 (253)
Q Consensus 183 ~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 210 (253)
..++++++|||++ .||+++|..+++.+
T Consensus 169 ~~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 169 KLHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp TSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred cCCcceEEEEech-hhHHHHHHHHHHHh
Confidence 3567899999999 99999999998864
No 93
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.95 E-value=6.5e-27 Score=182.74 Aligned_cols=167 Identities=25% Similarity=0.375 Sum_probs=139.8
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEE
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAF 125 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 125 (253)
...++|+|+|++|||||||+++|.+..+...+.++.. +...+.+.+ ++..+.+.+||++|++++...+..+++.++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~-~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~ 81 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV-DGKTIKAQIWDTAGQERYRRITSAYYRGAVGA 81 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEE-TTEEEEEEEEECSSGGGTTCCCHHHHTTCSEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEECCCchhhhhhhHHHHhcCCEE
Confidence 3468999999999999999999999887655555543 566677778 88888999999999999988888899999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHH
Q psy549 126 VLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFK 204 (253)
Q Consensus 126 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 204 (253)
++|||+++..++..+..|+..+........|+++|+||+|+.+. ....+.+..++. ..++.++++|++++.+++++|+
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~-~~~~~~~d~Sal~~~~i~~l~~ 160 (199)
T 2f9l_A 82 LLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAE-KNNLSFIETSALDSTNVEEAFK 160 (199)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHH-HTTCEEEECCTTTCTTHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHH-HcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999988888888776655567899999999999764 455666777777 5678899999999999999999
Q ss_pred HHHHHHHHhcc
Q psy549 205 ELLAQAKVQYN 215 (253)
Q Consensus 205 ~l~~~~~~~~~ 215 (253)
+|.+.+.....
T Consensus 161 ~l~~~~~~~~~ 171 (199)
T 2f9l_A 161 NILTEIYRIVS 171 (199)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999876543
No 94
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.95 E-value=1.7e-27 Score=185.11 Aligned_cols=161 Identities=12% Similarity=0.187 Sum_probs=121.9
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEE
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAF 125 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 125 (253)
....++|+|+|++|||||||+++|+++.+.. +.+|.. .....+.. ..+.+.+||+||++++...+..+++.+|++
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~-~~~~~~~~---~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 100 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG-FNVETVEY---KNICFTVWDVGGQDKIRPLWRHYFQNTQGL 100 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETT-EEEEEEEE---TTEEEEEEECC-----CTTHHHHHHTCCEE
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCc-eeEEEEEE---CCEEEEEEECCCCHhHHHHHHHHhccCCEE
Confidence 3567999999999999999999999888753 223332 33344444 337899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHh-cCCCCCEEEEEecCCCCCccccHHHHHHHHHh---cCCCcEEEeccCCCCCHHH
Q psy549 126 VLVYAVDDASTWDVVKDLREQIVNK-RGLMVPIVVVGNKCELEFKDVRREIAETIALY---DWQCGFVECSAKENYNIVQ 201 (253)
Q Consensus 126 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~~~i~~ 201 (253)
++|||++++.+|..+..|+..+... ...++|+++|+||+|+.+.....+..+.+... ..++++++|||++|.|+++
T Consensus 101 ilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~ 180 (192)
T 2b6h_A 101 IFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYD 180 (192)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEECcCCCcCCHHH
Confidence 9999999999999988888877652 23569999999999997653334444443321 2345799999999999999
Q ss_pred HHHHHHHHHH
Q psy549 202 VFKELLAQAK 211 (253)
Q Consensus 202 l~~~l~~~~~ 211 (253)
+|++|++.+.
T Consensus 181 l~~~l~~~i~ 190 (192)
T 2b6h_A 181 GLDWLSHELS 190 (192)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHh
Confidence 9999998763
No 95
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.95 E-value=3.6e-27 Score=186.07 Aligned_cols=161 Identities=18% Similarity=0.216 Sum_probs=117.8
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChh-hHHHhcccCCEE
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPA-MRELSISTADAF 125 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-~~~~~~~~~d~~ 125 (253)
...++|+|+|++|||||||+++|+++.+...+.++..+... +.+.+...+.+.+|||||++++.. ++..+++.+|++
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 82 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAV 82 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEE
Confidence 45789999999999999999999999987777665544443 666333357899999999999987 788889999999
Q ss_pred EEEEECCChh-hHHHHHHHHHHHHHh---cCCCCCEEEEEecCCCCCccccHHHHHHHHHh-------------------
Q psy549 126 VLVYAVDDAS-TWDVVKDLREQIVNK---RGLMVPIVVVGNKCELEFKDVRREIAETIALY------------------- 182 (253)
Q Consensus 126 i~v~d~~~~~-s~~~~~~~~~~~~~~---~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------------------- 182 (253)
|+|||+++.. ++.....|+..+... ...++|+++|+||+|+..........+.+...
T Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~ 162 (214)
T 2fh5_B 83 VFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSS 162 (214)
T ss_dssp EEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC----------
T ss_pred EEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCc
Confidence 9999999854 455555544443332 24568999999999998763333232222210
Q ss_pred -----cC-------------CCcEEEeccCCC------CCHHHHHHHHHHH
Q psy549 183 -----DW-------------QCGFVECSAKEN------YNIVQVFKELLAQ 209 (253)
Q Consensus 183 -----~~-------------~~~~~~~Sa~~~------~~i~~l~~~l~~~ 209 (253)
.. .+++++|||++| .||+++|++|.+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 163 TAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp --CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred cccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 11 667999999999 9999999999875
No 96
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.91 E-value=7.9e-30 Score=199.99 Aligned_cols=162 Identities=23% Similarity=0.412 Sum_probs=135.3
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEE
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAF 125 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 125 (253)
....++|+|+|++|||||||+++|+++.+...+.+|+.+.+...+.+ ++..+.+++||+||++++...+..+++++|++
T Consensus 27 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 105 (204)
T 3th5_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF 105 (204)
Confidence 35679999999999999999999999888777777877777777777 77778899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHH-HHHHHHHHhcCCCCCEEEEEecCCCCCc-------------cccHHHHHHHHHhcCCC-cEEE
Q psy549 126 VLVYAVDDASTWDVVK-DLREQIVNKRGLMVPIVVVGNKCELEFK-------------DVRREIAETIALYDWQC-GFVE 190 (253)
Q Consensus 126 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~-------------~~~~~~~~~~~~~~~~~-~~~~ 190 (253)
++|||++++.++..+. .|+..+.... .++|+++|+||+|+... .+..+.+..++. ..+. ++++
T Consensus 106 ilv~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~ 183 (204)
T 3th5_A 106 LICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAK-EIGAVKYLE 183 (204)
Confidence 9999999999999876 6777666543 37899999999999754 233344555555 3444 8999
Q ss_pred eccCCCCCHHHHHHHHHHHH
Q psy549 191 CSAKENYNIVQVFKELLAQA 210 (253)
Q Consensus 191 ~Sa~~~~~i~~l~~~l~~~~ 210 (253)
+||++|.|++++|++|++.+
T Consensus 184 vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 184 CSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 99999999999999998765
No 97
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.95 E-value=2.5e-26 Score=178.41 Aligned_cols=164 Identities=26% Similarity=0.377 Sum_probs=139.5
Q ss_pred CCCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCC
Q psy549 45 LQKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTAD 123 (253)
Q Consensus 45 ~~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 123 (253)
.....++|+|+|++|||||||+++|.+..+...+.+|.. ++..+.+.+ ++..+.+.+||++|.+++...+..+++.++
T Consensus 25 ~~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~-~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~ 103 (191)
T 1oix_A 25 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV-DGKTIKAQIWDTAGLERYRAITSAYYRGAV 103 (191)
T ss_dssp CCSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEE-TTEEEEEEEEEECSCCSSSCCCHHHHTTCC
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEE-CCEEEEEEEEECCCCcchhhhhHHHhhcCC
Confidence 345578999999999999999999999887665555554 556777888 888888999999999999988888999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHH
Q psy549 124 AFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQV 202 (253)
Q Consensus 124 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 202 (253)
++++|||+++..+|+.+..|+..+......+.|+++|+||+|+.+. ......+..++. ..++.++++|++++.+++++
T Consensus 104 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~-~~~~~~ld~Sald~~~v~~l 182 (191)
T 1oix_A 104 GALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAE-KNGLSFIETSALDSTNVEAA 182 (191)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH-HTTCEEEECCTTTCTTHHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHH-HcCCEEEEEeCCCCCCHHHH
Confidence 9999999999999988888887776655567899999999999764 556677788887 56789999999999999999
Q ss_pred HHHHHHHH
Q psy549 203 FKELLAQA 210 (253)
Q Consensus 203 ~~~l~~~~ 210 (253)
|++|.+.+
T Consensus 183 ~~~l~~~i 190 (191)
T 1oix_A 183 FQTILTEI 190 (191)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998765
No 98
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.95 E-value=1.1e-26 Score=194.89 Aligned_cols=163 Identities=23% Similarity=0.380 Sum_probs=140.9
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEE
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFV 126 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 126 (253)
...++|+|+|++|+|||||+++|.++.+...+.+|+.+.+...+.+ ++..+.+.+||+||++++...+..+++.+|+++
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 231 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 231 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEE-TTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEE
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEE-CCEEEEEEEEeCCCchhhhHHHHHhccCCCEEE
Confidence 3558999999999999999999999998888888888887777777 888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHHhcCCCCCEEEEEecCCCCCc-------------cccHHHHHHHHHhcCCCcEEEec
Q psy549 127 LVYAVDDASTWDVVK-DLREQIVNKRGLMVPIVVVGNKCELEFK-------------DVRREIAETIALYDWQCGFVECS 192 (253)
Q Consensus 127 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~-------------~~~~~~~~~~~~~~~~~~~~~~S 192 (253)
+|||++++.+|..+. .|+..+.... .++|+++|+||+|+... .+..+.+..++......++++||
T Consensus 232 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 310 (332)
T 2wkq_A 232 ICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 310 (332)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhhC-CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEec
Confidence 999999999999886 6777776654 47999999999998653 45566777777744334899999
Q ss_pred cCCCCCHHHHHHHHHHHHH
Q psy549 193 AKENYNIVQVFKELLAQAK 211 (253)
Q Consensus 193 a~~~~~i~~l~~~l~~~~~ 211 (253)
|++|.|++++|++|++.+.
T Consensus 311 a~~~~gi~~l~~~l~~~~~ 329 (332)
T 2wkq_A 311 ALTQRGLKTVFDEAIRAVL 329 (332)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHh
Confidence 9999999999999998874
No 99
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.95 E-value=2e-27 Score=182.72 Aligned_cols=162 Identities=16% Similarity=0.204 Sum_probs=123.6
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEE
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFV 126 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 126 (253)
...++|+|+|++|||||||+++|.++.+ ..+.+|.. .....+.+ ++ +.+.+||+||++++...+..+++.+|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~-~~~~~~~~-~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 90 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIG-FNVETLSY-KN--LKLNVWDLGGQTSIRPYWRCYYADTAAVI 90 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTT-CCEEEEEE-TT--EEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCc-cceEEEEE-CC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 4679999999999999999999998776 33333333 33445555 33 68899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEecCCCCCccccHHHHHHHHHh---cCCCcEEEeccCCCCCHHHH
Q psy549 127 LVYAVDDASTWDVVKDLREQIVNKR-GLMVPIVVVGNKCELEFKDVRREIAETIALY---DWQCGFVECSAKENYNIVQV 202 (253)
Q Consensus 127 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~~~i~~l 202 (253)
+|+|++++.++..+..|+..+.... ..++|+++|+||+|+.+.....+..+.+... ..+++++++||++|.|++++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 170 (183)
T 1moz_A 91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEG 170 (183)
T ss_dssp EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHH
Confidence 9999999999999888888776532 3679999999999997653333333333221 23457999999999999999
Q ss_pred HHHHHHHHHHh
Q psy549 203 FKELLAQAKVQ 213 (253)
Q Consensus 203 ~~~l~~~~~~~ 213 (253)
|++|.+.+.+.
T Consensus 171 ~~~l~~~~~~~ 181 (183)
T 1moz_A 171 LDWLIDVIKEE 181 (183)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 99999988654
No 100
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.94 E-value=6.7e-27 Score=180.99 Aligned_cols=162 Identities=20% Similarity=0.256 Sum_probs=127.6
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEE
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFV 126 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 126 (253)
...++|+++|++|||||||+++|.++.+.. +.+|.. .....+.+ + .+.+.+|||||++++...+..+++.+|+++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~-~~~~~~~~-~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 94 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVG-VNLETLQY-K--NISFEVWDLGGQTGVRPYWRCYFSDTDAVI 94 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTT-CCEEEEEE-T--TEEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCc-eEEEEEEE-C--CEEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence 467999999999999999999999887753 333333 33444555 3 368899999999999998888999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEecCCCCCccccHHHHHHHHHh---cCCCcEEEeccCCCCCHHHH
Q psy549 127 LVYAVDDASTWDVVKDLREQIVNKR-GLMVPIVVVGNKCELEFKDVRREIAETIALY---DWQCGFVECSAKENYNIVQV 202 (253)
Q Consensus 127 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~~~i~~l 202 (253)
+|+|++++.++..+..|+..+.... ..++|+++|+||+|+.+.....+..+.+... ..++++++|||+++.|++++
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 174 (189)
T 2x77_A 95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEG 174 (189)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEEccCCCccCHHHH
Confidence 9999999999999888887776532 3579999999999997753334444433321 23457999999999999999
Q ss_pred HHHHHHHHHHh
Q psy549 203 FKELLAQAKVQ 213 (253)
Q Consensus 203 ~~~l~~~~~~~ 213 (253)
|++|.+.+.+.
T Consensus 175 ~~~l~~~i~~~ 185 (189)
T 2x77_A 175 MDWLVERLREQ 185 (189)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhc
Confidence 99999988654
No 101
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.94 E-value=1.9e-27 Score=192.92 Aligned_cols=171 Identities=22% Similarity=0.275 Sum_probs=125.5
Q ss_pred CCCCCCCCCcceEEEECCC---------CCCHHHHHHHHHh---CCCCCCccccc--eeeeeeeEEc-------------
Q psy549 40 GTGVGLQKDKRRVVVMGGA---------RVGKSSIISQFLY---DRFISRYKETV--EELHRGEYEL------------- 92 (253)
Q Consensus 40 ~~~~~~~~~~~~I~iiG~~---------~~GKSsLi~~l~~---~~~~~~~~~t~--~~~~~~~~~~------------- 92 (253)
+.........+||+|+|++ |||||||+++|++ +.+...+.+++ .++....+.+
T Consensus 10 ~~~~~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~ 89 (255)
T 3c5h_A 10 GRENLYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSL 89 (255)
T ss_dssp -CTTSSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---
T ss_pred ccCCCCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccc
Confidence 3344456678999999999 9999999999999 55655565554 2333333221
Q ss_pred CCCcEEEEEEEe-----------------------CCCCCCChhhHHHhcc---------------------cCCEEEEE
Q psy549 93 PDGAQLTLDILD-----------------------TSGAYQFPAMRELSIS---------------------TADAFVLV 128 (253)
Q Consensus 93 ~~~~~~~~~l~D-----------------------~~g~~~~~~~~~~~~~---------------------~~d~~i~v 128 (253)
.++..+.++||| ++|+++|..++..+++ ++|++|+|
T Consensus 90 ~~~~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV 169 (255)
T 3c5h_A 90 EDCVECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLG 169 (255)
T ss_dssp ------CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEE
T ss_pred cCCcEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEE
Confidence 156778999999 5666666666666666 79999999
Q ss_pred EECCCh--hhHHHHHHHHHHHHHh-cCCCCCEEEEEecCCCCCccccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHHH
Q psy549 129 YAVDDA--STWDVVKDLREQIVNK-RGLMVPIVVVGNKCELEFKDVRREIAETIALYDWQCGFVECSAKENYNIVQVFKE 205 (253)
Q Consensus 129 ~d~~~~--~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 205 (253)
||++++ .+|+.+..|+..+... ...++|+++|+||+|+...... +..+.++....+++++++||++|.|++++|++
T Consensus 170 ~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v-~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~ 248 (255)
T 3c5h_A 170 IDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI-RDAHTFALSKKNLQVVETSARSNVNVDLAFST 248 (255)
T ss_dssp EECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH-HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHH
T ss_pred EECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH-HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHH
Confidence 999998 9999999999888764 3467999999999998654222 45566665345789999999999999999999
Q ss_pred HHHHHH
Q psy549 206 LLAQAK 211 (253)
Q Consensus 206 l~~~~~ 211 (253)
|++.+.
T Consensus 249 l~~~l~ 254 (255)
T 3c5h_A 249 LVQLID 254 (255)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 998763
No 102
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.94 E-value=7.9e-27 Score=180.05 Aligned_cols=162 Identities=15% Similarity=0.276 Sum_probs=117.2
Q ss_pred cceEEEECCCCCCHHHHHHHHHhC--CCCCCccccce-eeeeeeEEcC--CCcEEEEEEEeCCCCCCChhhHHHhcccCC
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYD--RFISRYKETVE-ELHRGEYELP--DGAQLTLDILDTSGAYQFPAMRELSISTAD 123 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~--~~~~~~~~t~~-~~~~~~~~~~--~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 123 (253)
.+||+|+|++|||||||+++|.+. .+...+.+|.. +.....+.+. ++..+.+.+||++|+++|..++..++++++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 489999999999999999999985 34444455543 4333333321 335678999999999999888888999999
Q ss_pred EEEEEEECCCh-hhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCcccc----HHHHHHHHHhcCCCc----EEEeccC
Q psy549 124 AFVLVYAVDDA-STWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVR----REIAETIALYDWQCG----FVECSAK 194 (253)
Q Consensus 124 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~----~~~~~~~~~~~~~~~----~~~~Sa~ 194 (253)
++++|||++++ .+|..+..|+..+.... +++|+++|+||+|+.+.... .+..+.++. ..+++ ++++||+
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~Sa~ 159 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA-SSSPVILVGTHLDVSDEKQRKACMSKITKELLN-KRGFPAIRDYHFVNAT 159 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHC-TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTT-CTTSCEEEEEEECCTT
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhC-CCCcEEEEEECCCcccchhhHHHHHHHHHHHHH-hcCCcchhheEEEecc
Confidence 99999999997 57888899998877653 57899999999998765221 233444544 34565 8999999
Q ss_pred CCC-CHHHHHHHHHHHHHH
Q psy549 195 ENY-NIVQVFKELLAQAKV 212 (253)
Q Consensus 195 ~~~-~i~~l~~~l~~~~~~ 212 (253)
++. ++.++++.+.+.+..
T Consensus 160 ~~~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 160 EESDALAKLRKTIINESLN 178 (184)
T ss_dssp SCCHHHHHHHHHHHHHHHC
T ss_pred cCchhHHHHHHHHHHHHhc
Confidence 997 999999999887743
No 103
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.94 E-value=4.6e-26 Score=191.08 Aligned_cols=161 Identities=14% Similarity=0.207 Sum_probs=122.9
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEE
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAF 125 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 125 (253)
....++|+|+|++|||||||+++|.++.+....+ |. ......+.. ..+.++||||||++.+..++..+++.+|++
T Consensus 162 ~~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~p-T~-~~~~~~~~~---~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~v 236 (329)
T 3o47_A 162 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP-TI-GFNVETVEY---KNISFTVWDVGGQDKIRPLWRHYFQNTQGL 236 (329)
T ss_dssp -CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEEE-ET-TEEEEEEEE---TTEEEEEEECC-----CCSHHHHHTTEEEE
T ss_pred ccCcceEEEECCCCccHHHHHHHHhCCCCCCccc-cc-ceEEEEEec---CcEEEEEEECCCCHhHHHHHHHHhccCCEE
Confidence 3567899999999999999999999988754432 22 222333333 347899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHh-cCCCCCEEEEEecCCCCCccccHHHHHHHHHh---cCCCcEEEeccCCCCCHHH
Q psy549 126 VLVYAVDDASTWDVVKDLREQIVNK-RGLMVPIVVVGNKCELEFKDVRREIAETIALY---DWQCGFVECSAKENYNIVQ 201 (253)
Q Consensus 126 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~~~i~~ 201 (253)
|+|||++++.+|..+..|+..+... ...++|+++|+||+|+.+.....+....+... ..++++++|||++|.||++
T Consensus 237 ilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~e 316 (329)
T 3o47_A 237 IFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYE 316 (329)
T ss_dssp EEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHH
T ss_pred EEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHH
Confidence 9999999999999988887776653 33579999999999998765444455544431 2356799999999999999
Q ss_pred HHHHHHHHHH
Q psy549 202 VFKELLAQAK 211 (253)
Q Consensus 202 l~~~l~~~~~ 211 (253)
+|++|++.+.
T Consensus 317 l~~~l~~~l~ 326 (329)
T 3o47_A 317 GLDWLSNQLR 326 (329)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 9999999874
No 104
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.93 E-value=1.6e-25 Score=169.72 Aligned_cols=151 Identities=19% Similarity=0.261 Sum_probs=111.3
Q ss_pred cceEEEECCCCCCHHHHHHHHHhCCC-CCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCCh------hhHHHhcc-
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYDRF-ISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFP------AMRELSIS- 120 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~------~~~~~~~~- 120 (253)
.++|+++|++|||||||+++|.+..+ ...++.++.+.....+.+ ++ ..+.+|||||++++. .+...+++
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~-~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 79 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEY-NG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN 79 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEE-TT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEE-CC--cEEEEEECCCcccCCCcchhHHHHHHHHhc
Confidence 58999999999999999999998765 344444445555666666 44 578999999998875 33445554
Q ss_pred -cCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCC
Q psy549 121 -TADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYN 198 (253)
Q Consensus 121 -~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 198 (253)
++|++++|+|+++.+ ....|+..+.. .++|+++|+||+|+... .+.. ..+.++. ..+++++++||++|.|
T Consensus 80 ~~~~~~i~v~D~~~~~---~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~-~~~~~~~~~SA~~~~~ 151 (165)
T 2wji_A 80 EKPDLVVNIVDATALE---RNLYLTLQLME---MGANLLLALNKMDLAKSLGIEI-DVDKLEK-ILGVKVVPLSAAKKMG 151 (165)
T ss_dssp HCCSEEEEEEETTCHH---HHHHHHHHHHH---TTCCEEEEEECHHHHHHTTCCC-CHHHHHH-HHTSCEEECBGGGTBS
T ss_pred CCCCEEEEEecCCchh---HhHHHHHHHHh---cCCCEEEEEEchHhccccChhh-HHHHHHH-HhCCCEEEEEcCCCCC
Confidence 899999999998854 33456666554 46899999999998643 2221 2455555 3457899999999999
Q ss_pred HHHHHHHHHHHH
Q psy549 199 IVQVFKELLAQA 210 (253)
Q Consensus 199 i~~l~~~l~~~~ 210 (253)
++++|+++.+.+
T Consensus 152 v~~l~~~l~~~~ 163 (165)
T 2wji_A 152 IEELKKAISIAV 163 (165)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999998765
No 105
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.93 E-value=2.1e-25 Score=185.44 Aligned_cols=160 Identities=14% Similarity=0.166 Sum_probs=126.1
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCC--CCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCC-----hhhHHHhcc
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDR--FISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQF-----PAMRELSIS 120 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-----~~~~~~~~~ 120 (253)
..+||+++|++|||||||+++|+++. +......++.......+.+ ++ .+.+.+||+||++.+ ...+..+++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~-~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 79 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRF-LG-NMTLNLWDCGGQDVFMENYFTKQKDHIFQ 79 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEE-TT-TEEEEEEEECCSHHHHHHHHTTTHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEe-CC-ceEEEEEECCCcHHHhhhhhhhHHHHHhc
Confidence 45899999999999999999999874 3344455555555556665 44 478999999999988 677788899
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHHHh--cCCCCCEEEEEecCCCCCc---c----ccHHHHHHHHHhcC--CCcEE
Q psy549 121 TADAFVLVYAVDDASTWDVVKDLREQIVNK--RGLMVPIVVVGNKCELEFK---D----VRREIAETIALYDW--QCGFV 189 (253)
Q Consensus 121 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~~piilv~nK~Dl~~~---~----~~~~~~~~~~~~~~--~~~~~ 189 (253)
++|++|+|||++++.+|+.+..|...+... ..+++|+++|+||+|+... . +..+.++.++.... .++++
T Consensus 80 ~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~ 159 (307)
T 3r7w_A 80 MVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGF 159 (307)
T ss_dssp TCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEE
T ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEE
Confidence 999999999999999999988776555442 2467999999999999872 2 44566777777333 38999
Q ss_pred EeccCCCCCHHHHHHHHHHHH
Q psy549 190 ECSAKENYNIVQVFKELLAQA 210 (253)
Q Consensus 190 ~~Sa~~~~~i~~l~~~l~~~~ 210 (253)
+|||++ .++.++|..++..+
T Consensus 160 ~tSa~~-~~i~e~~~~iv~~l 179 (307)
T 3r7w_A 160 PTSIWD-ESLYKAWSQIVCSL 179 (307)
T ss_dssp ECCTTS-SHHHHHHHHHHHTT
T ss_pred EeeecC-ChHHHHHHHHHHHH
Confidence 999999 88999998887643
No 106
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.93 E-value=2.4e-25 Score=196.92 Aligned_cols=163 Identities=15% Similarity=0.210 Sum_probs=127.6
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEE
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAF 125 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 125 (253)
....++|+|+|.+|||||||+++|+++.+.... + +.......+.+ + .+.+.||||+|++.+..++..+++.+|++
T Consensus 319 ~~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~~-~-T~~~~~~~~~~-~--~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~ 393 (497)
T 3lvq_E 319 SNKEMRILMLGLDAAGKTTILYKLKLGQSVTTI-P-TVGFNVETVTY-K--NVKFNVWDVGGQDKIRPLWRHYYTGTQGL 393 (497)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHSSCCCCC-C-CSSEEEEEEES-S--SCEEEEEEECCCGGGSGGGGGGGTTCCEE
T ss_pred cccceeEEEEcCCCCCHHHHHHHHhcCCCCCcC-C-ccceeEEEEEe-C--CEEEEEEECCCcHHHHHHHHHHhccCCEE
Confidence 456799999999999999999999998875433 2 33344444555 3 36789999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhc-CCCCCEEEEEecCCCCCccccHHHHHHHHHh---cCCCcEEEeccCCCCCHHH
Q psy549 126 VLVYAVDDASTWDVVKDLREQIVNKR-GLMVPIVVVGNKCELEFKDVRREIAETIALY---DWQCGFVECSAKENYNIVQ 201 (253)
Q Consensus 126 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~~~i~~ 201 (253)
|+|||++++.+|..+..|+..+.... ..++|+++|+||+|+.......+....+... ...+++++|||++|.||++
T Consensus 394 i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~ 473 (497)
T 3lvq_E 394 IFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYE 473 (497)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHHH
T ss_pred EEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCHHHHHHHhchhhhhcCCeEEEEEECCCCCCHHH
Confidence 99999999999999998888876632 2579999999999997754333333333221 2345699999999999999
Q ss_pred HHHHHHHHHHHh
Q psy549 202 VFKELLAQAKVQ 213 (253)
Q Consensus 202 l~~~l~~~~~~~ 213 (253)
+|++|.+.+...
T Consensus 474 l~~~l~~~~~~~ 485 (497)
T 3lvq_E 474 GLTWLTSNYKSK 485 (497)
T ss_dssp HHHHHHHHCC--
T ss_pred HHHHHHHHHHhc
Confidence 999999887444
No 107
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.93 E-value=7e-25 Score=167.64 Aligned_cols=161 Identities=20% Similarity=0.317 Sum_probs=117.8
Q ss_pred CCCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccc-cceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCC
Q psy549 45 LQKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKE-TVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTAD 123 (253)
Q Consensus 45 ~~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 123 (253)
.....++|+|+|++|||||||+++|.+..+...+.+ ++.+.....+.+ ++ ..+.+|||||++++...+..++..+|
T Consensus 4 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d 80 (178)
T 2lkc_A 4 MVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTV-ND--KKITFLDTPGHEAFTTMRARGAQVTD 80 (178)
T ss_dssp TCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEE-TT--EEEEESCCCSSSSSSCSCCSSCCCCC
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEe-CC--ceEEEEECCCCHHHHHHHHHHHhhCC
Confidence 355779999999999999999999999887554433 334555566666 54 35789999999999988888899999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHHhc-----C--CCcEEEeccCCC
Q psy549 124 AFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIALYD-----W--QCGFVECSAKEN 196 (253)
Q Consensus 124 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----~--~~~~~~~Sa~~~ 196 (253)
++++|+|++++....... ++ ......++|+++|+||+|+.... ..+....+.... + .++++++||++|
T Consensus 81 ~~i~v~d~~~~~~~~~~~-~l---~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 155 (178)
T 2lkc_A 81 IVILVVAADDGVMPQTVE-AI---NHAKAANVPIIVAINKMDKPEAN-PDRVMQELMEYNLVPEEWGGDTIFCKLSAKTK 155 (178)
T ss_dssp EEEEEEETTCCCCHHHHH-HH---HHHGGGSCCEEEEEETTTSSCSC-HHHHHHHHTTTTCCBTTTTSSEEEEECCSSSS
T ss_pred EEEEEEECCCCCcHHHHH-HH---HHHHhCCCCEEEEEECccCCcCC-HHHHHHHHHhcCcChhHcCCcccEEEEecCCC
Confidence 999999998843322222 11 22222568999999999997631 122223332211 1 258999999999
Q ss_pred CCHHHHHHHHHHHHHHh
Q psy549 197 YNIVQVFKELLAQAKVQ 213 (253)
Q Consensus 197 ~~i~~l~~~l~~~~~~~ 213 (253)
.|++++|++|++.+...
T Consensus 156 ~gv~~l~~~l~~~~~~~ 172 (178)
T 2lkc_A 156 EGLDHLLEMILLVSEME 172 (178)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhhhhh
Confidence 99999999999988654
No 108
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.93 E-value=1.6e-24 Score=172.69 Aligned_cols=164 Identities=16% Similarity=0.128 Sum_probs=114.8
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCCCC-CCccccceeeeeeeEEcCCCcEEEEEEEeCCCCC------CC---hhhH
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDRFI-SRYKETVEELHRGEYELPDGAQLTLDILDTSGAY------QF---PAMR 115 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~------~~---~~~~ 115 (253)
....++|+|+|++|||||||+++|++..+. .....++.......+.. ++ +.+.+|||||+. .. ....
T Consensus 26 ~~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~-~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~ 102 (228)
T 2qu8_A 26 NPHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDH-KL--NKYQIIDTPGLLDRAFENRNTIEMTTI 102 (228)
T ss_dssp CTTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEE-TT--EEEEEEECTTTTTSCGGGCCHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeec-CC--CeEEEEECCCCcCcccchhhhHHHHHH
Confidence 456799999999999999999999998763 33344444555555544 32 678999999983 31 1122
Q ss_pred HHhcccCCEEEEEEECCChhhHHH--HHHHHHHHHHhcCCCCCEEEEEecCCCCCc-cccHH---HHHHHHHhcCC--Cc
Q psy549 116 ELSISTADAFVLVYAVDDASTWDV--VKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRRE---IAETIALYDWQ--CG 187 (253)
Q Consensus 116 ~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~---~~~~~~~~~~~--~~ 187 (253)
..++..+|++|+|||++++.+|.. ...|+..+... ..++|+++|+||+|+... .+... ....+.. ..+ ++
T Consensus 103 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~ 180 (228)
T 2qu8_A 103 TALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV-FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILD-NVKNPIK 180 (228)
T ss_dssp HHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC-C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHH-HCCSCEE
T ss_pred HHhhccccEEEEEEecccccCcchHHHHHHHHHHHHh-hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHH-hcCCCce
Confidence 345778899999999999887652 22344444332 247999999999999765 33333 3445554 334 78
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHHhc
Q psy549 188 FVECSAKENYNIVQVFKELLAQAKVQY 214 (253)
Q Consensus 188 ~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 214 (253)
+++|||++|.||+++|++|++.+....
T Consensus 181 ~~~~SA~~g~gi~~l~~~l~~~i~~~~ 207 (228)
T 2qu8_A 181 FSSFSTLTGVGVEQAKITACELLKNDQ 207 (228)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred EEEEecccCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999887654
No 109
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.93 E-value=1.6e-25 Score=170.92 Aligned_cols=153 Identities=19% Similarity=0.256 Sum_probs=117.9
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCCC--CCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhH--------HH
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDRF--ISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMR--------EL 117 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~--------~~ 117 (253)
..++|+|+|++|||||||+++|.+... ...++.++.+.....+.+ ++. .+.+|||||++++.... ..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 79 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHI-DGM--PLHIIDTAGLREASDEVERIGIERAWQ 79 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEE-TTE--EEEEEECCCCSCCSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEE-CCe--EEEEEECCCcccchhHHHHHHHHHHHH
Confidence 458999999999999999999998764 455667777777788887 553 57899999987643211 23
Q ss_pred hcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHHhcCCCcEEEeccCCCC
Q psy549 118 SISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIALYDWQCGFVECSAKENY 197 (253)
Q Consensus 118 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 197 (253)
+++.+|++++|+|++++.++.. ..|+..+......++|+++|+||+|+...... ++. ..+.++++|||++|.
T Consensus 80 ~~~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~------~~~-~~~~~~~~~SA~~g~ 151 (172)
T 2gj8_A 80 EIEQADRVLFMVDGTTTDAVDP-AEIWPEFIARLPAKLPITVVRNKADITGETLG------MSE-VNGHALIRLSARTGE 151 (172)
T ss_dssp HHHTCSEEEEEEETTTCCCCSH-HHHCHHHHHHSCTTCCEEEEEECHHHHCCCCE------EEE-ETTEEEEECCTTTCT
T ss_pred HHHhCCEEEEEEECCCCCCHHH-HHHHHHHHHhcccCCCEEEEEECccCCcchhh------hhh-ccCCceEEEeCCCCC
Confidence 5789999999999999888763 56777776665567999999999998543110 111 245689999999999
Q ss_pred CHHHHHHHHHHHHH
Q psy549 198 NIVQVFKELLAQAK 211 (253)
Q Consensus 198 ~i~~l~~~l~~~~~ 211 (253)
|++++|++|.+.+.
T Consensus 152 gv~~l~~~l~~~~~ 165 (172)
T 2gj8_A 152 GVDVLRNHLKQSMG 165 (172)
T ss_dssp THHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999988764
No 110
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.92 E-value=4.2e-24 Score=177.63 Aligned_cols=164 Identities=20% Similarity=0.185 Sum_probs=131.0
Q ss_pred CCCCCcceEEEECCCCCCHHHHHHHHHhCCC--CCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCCh---------
Q psy549 44 GLQKDKRRVVVMGGARVGKSSIISQFLYDRF--ISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFP--------- 112 (253)
Q Consensus 44 ~~~~~~~~I~iiG~~~~GKSsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~--------- 112 (253)
++..+.-.|+|+|.+|||||||+|+|++..+ ....+.++.......+.. + ..+.+.||||||+..+.
T Consensus 5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~-~-~~~~i~lvDTPG~~~~~~~~~l~~~~ 82 (308)
T 3iev_A 5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNI-P-NEAQIIFLDTPGIYEPKKSDVLGHSM 82 (308)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEE-T-TTEEEEEEECCCCCCCCTTCHHHHHH
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEec-C-CCCeEEEEECcCCCccccchhHHHHH
Confidence 3455678999999999999999999999886 456667777776666666 3 13578999999987654
Q ss_pred -hhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCC-CccccHHHHHHHHHhc-CCCcEE
Q psy549 113 -AMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELE-FKDVRREIAETIALYD-WQCGFV 189 (253)
Q Consensus 113 -~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~-~~~~~~ 189 (253)
.....+++.+|++++|+|++++.++.....|+..+.. .++|+++|+||+|+. +........+.+.... ...+++
T Consensus 83 ~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~---~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~ 159 (308)
T 3iev_A 83 VEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP---LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIV 159 (308)
T ss_dssp HHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG---GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEE
T ss_pred HHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh---cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEE
Confidence 4555678899999999999998888877766766655 458999999999998 5566677777777744 457899
Q ss_pred EeccCCCCCHHHHHHHHHHHHHH
Q psy549 190 ECSAKENYNIVQVFKELLAQAKV 212 (253)
Q Consensus 190 ~~Sa~~~~~i~~l~~~l~~~~~~ 212 (253)
++||++|.|++++|+++.+.+..
T Consensus 160 ~vSA~~g~gv~~L~~~l~~~l~~ 182 (308)
T 3iev_A 160 PISALKGANLDELVKTILKYLPE 182 (308)
T ss_dssp ECBTTTTBSHHHHHHHHHHHSCB
T ss_pred EEeCCCCCCHHHHHHHHHHhCcc
Confidence 99999999999999999988743
No 111
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.91 E-value=5.4e-25 Score=181.94 Aligned_cols=154 Identities=18% Similarity=0.199 Sum_probs=112.2
Q ss_pred eEEEECCCCCCHHHHHHHHHhCCCCC---CccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChh---hHHHhcccCCE
Q psy549 51 RVVVMGGARVGKSSIISQFLYDRFIS---RYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPA---MRELSISTADA 124 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~---~~~~~~~~~d~ 124 (253)
||+++|+.|||||||++++.++.++. .+.+|....+. . + + ..+++++|||+|+++|.. .+..+++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~-~--v-~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLE-H--F-S-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCE-E--E-C-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeE-E--E-c-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 68999999999999999888664432 13334332221 1 2 2 237899999999999964 46889999999
Q ss_pred EEEEEECCChhhHHHHHH---HHHHHHHhcCCCCCEEEEEecCCCCCc--------cccHHHHHHHHHhc---CCCcEEE
Q psy549 125 FVLVYAVDDASTWDVVKD---LREQIVNKRGLMVPIVVVGNKCELEFK--------DVRREIAETIALYD---WQCGFVE 190 (253)
Q Consensus 125 ~i~v~d~~~~~s~~~~~~---~~~~~~~~~~~~~piilv~nK~Dl~~~--------~~~~~~~~~~~~~~---~~~~~~~ 190 (253)
+|+|||+++. .+..... |+..+.. ..+++|+++|+||+|+... ++..+.++.+++.. .++++++
T Consensus 76 ~IlV~Ditd~-~~~~~~~l~~~l~~~~~-~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~e 153 (331)
T 3r7w_B 76 LVYVIDSQDE-YINAITNLAMIIEYAYK-VNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYL 153 (331)
T ss_dssp EEEECCCSSC-TTHHHHHHHHHHHHHHH-HCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEEC
T ss_pred EEEEEECCch-HHHHHHHHHHHHHHHhh-cCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEE
Confidence 9999999998 3333333 3333333 3468999999999999764 34555666677632 5789999
Q ss_pred eccCCCCCHHHHHHHHHHHHHH
Q psy549 191 CSAKENYNIVQVFKELLAQAKV 212 (253)
Q Consensus 191 ~Sa~~~~~i~~l~~~l~~~~~~ 212 (253)
|||++ .+|.++|..+++.+..
T Consensus 154 TSAkd-~nV~eAFs~iv~~li~ 174 (331)
T 3r7w_B 154 TSIFD-HSIYEAFSRIVQKLIP 174 (331)
T ss_dssp CCSSS-SHHHHHHHHHHTTSST
T ss_pred eccCC-CcHHHHHHHHHHHHHh
Confidence 99998 5899999999876543
No 112
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.91 E-value=3.1e-24 Score=165.65 Aligned_cols=156 Identities=19% Similarity=0.236 Sum_probs=117.5
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCCC-CCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCCh------hhHHHhcc
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDRF-ISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFP------AMRELSIS 120 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~------~~~~~~~~ 120 (253)
..++|+|+|++|||||||+++|++..+ ...++.++.+.....+.+ ++ +.+.+|||||++.+. .+...++.
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~-~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 82 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEY-NG--EKFKVVDLPGVYSLTANSIDEIIARDYII 82 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEE-TT--EEEEEEECCCCSCCSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEe-CC--cEEEEEECCCcCccccccHHHHHHHHHHh
Confidence 568999999999999999999998664 333444455666666666 43 678999999999874 34455554
Q ss_pred --cCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHHhcCCCcEEEeccCCCCC
Q psy549 121 --TADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIALYDWQCGFVECSAKENYN 198 (253)
Q Consensus 121 --~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 198 (253)
.+|++++|+|.++ +.....|+..+.. .++|+++|+||+|+..........+.++. ..+++++++||+++.|
T Consensus 83 ~~~~~~~i~v~d~~~---~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~ 155 (188)
T 2wjg_A 83 NEKPDLVVNIVDATA---LERNLYLTLQLME---MGANLLLALNKMDLAKSLGIEIDVDKLEK-ILGVKVVPLSAAKKMG 155 (188)
T ss_dssp HHCCSEEEEEEEGGG---HHHHHHHHHHHHT---TTCCEEEEEECHHHHHHTTCCCCHHHHHH-HHTSCEEECBGGGTBS
T ss_pred ccCCCEEEEEecchh---HHHHHHHHHHHHh---cCCCEEEEEEhhhccccccchHHHHHHHH-HhCCCeEEEEecCCCC
Confidence 4999999999875 4555667766554 56899999999998654211133455655 4467999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q psy549 199 IVQVFKELLAQAKVQ 213 (253)
Q Consensus 199 i~~l~~~l~~~~~~~ 213 (253)
++++|+++++.+...
T Consensus 156 v~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 156 IEELKKAISIAVKDK 170 (188)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999988543
No 113
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.91 E-value=2.9e-24 Score=166.71 Aligned_cols=157 Identities=18% Similarity=0.231 Sum_probs=107.4
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCC----------CCCChhh
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSG----------AYQFPAM 114 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g----------~~~~~~~ 114 (253)
....++|+|+|++|||||||+++|++..+...+..+.. ......+.+ ++ .+.+||||| ++.+..+
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~-~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~ 95 (195)
T 1svi_A 20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII-ND---ELHFVDVPGYGFAKVSKSEREAWGRM 95 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE-TT---TEEEEECCCBCCCSSCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE-CC---cEEEEECCCCCccccCHHHHHHHHHH
Confidence 34679999999999999999999999875433333322 111222333 33 578999999 5566667
Q ss_pred HHHhcccC---CEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHH---hcCCCcE
Q psy549 115 RELSISTA---DAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIAL---YDWQCGF 188 (253)
Q Consensus 115 ~~~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~---~~~~~~~ 188 (253)
+..+++.+ |++++|+|++++.++.... ++..+.. .++|+++|+||+|+..........+.+.. .....++
T Consensus 96 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (195)
T 1svi_A 96 IETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDEL 171 (195)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEE
T ss_pred HHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCce
Confidence 77777777 9999999999987776532 2222222 56899999999999875333222222222 1456799
Q ss_pred EEeccCCCCCHHHHHHHHHHHH
Q psy549 189 VECSAKENYNIVQVFKELLAQA 210 (253)
Q Consensus 189 ~~~Sa~~~~~i~~l~~~l~~~~ 210 (253)
+++||++|.|++++|++|.+.+
T Consensus 172 ~~~Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 172 ILFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp EECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEEccCCCCHHHHHHHHHHHh
Confidence 9999999999999999998876
No 114
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.91 E-value=2.2e-24 Score=162.13 Aligned_cols=150 Identities=15% Similarity=0.184 Sum_probs=106.0
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCCC--CCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCC-------hhhHHHhcc
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDRF--ISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQF-------PAMRELSIS 120 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-------~~~~~~~~~ 120 (253)
++|+++|++|+|||||+++|.+..+ ....+.++.+.....+.. ++ ..+.+||+||...+ ...+..+++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 78 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVET-DR--GRFLLVDTGGLWSGDKWEKKIQEKVDRALE 78 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEE-TT--EEEEEEECGGGCSSSSCCHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEe-CC--ceEEEEECCCCCCccchHHHHHHHHHHHHH
Confidence 6899999999999999999999874 345555566666667776 44 36889999998873 445566789
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHHhcCCCcEEEeccCCCCCHH
Q psy549 121 TADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIALYDWQCGFVECSAKENYNIV 200 (253)
Q Consensus 121 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 200 (253)
.+|++++|+|++++.+... .++..+... .++|+++|+||+|+.... +....+.. ....+++++||++|.|++
T Consensus 79 ~~~~~i~v~d~~~~~~~~~--~~~~~~~~~--~~~p~ilv~nK~Dl~~~~---~~~~~~~~-~~~~~~~~~Sa~~~~gv~ 150 (161)
T 2dyk_A 79 DAEVVLFAVDGRAELTQAD--YEVAEYLRR--KGKPVILVATKVDDPKHE---LYLGPLYG-LGFGDPIPTSSEHARGLE 150 (161)
T ss_dssp TCSEEEEEEESSSCCCHHH--HHHHHHHHH--HTCCEEEEEECCCSGGGG---GGCGGGGG-GSSCSCEECBTTTTBSHH
T ss_pred hCCEEEEEEECCCcccHhH--HHHHHHHHh--cCCCEEEEEECcccccch---HhHHHHHh-CCCCCeEEEecccCCChH
Confidence 9999999999998654332 222222222 458999999999987652 22233332 222379999999999999
Q ss_pred HHHHHHHHHH
Q psy549 201 QVFKELLAQA 210 (253)
Q Consensus 201 ~l~~~l~~~~ 210 (253)
++|+++++.+
T Consensus 151 ~l~~~l~~~l 160 (161)
T 2dyk_A 151 ELLEAIWERL 160 (161)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 9999998764
No 115
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.91 E-value=1.6e-23 Score=162.28 Aligned_cols=155 Identities=14% Similarity=0.115 Sum_probs=108.3
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCC----------CCCChhh
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSG----------AYQFPAM 114 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g----------~~~~~~~ 114 (253)
....++|+|+|++|||||||+++|++..+.. ...+.. ......... +. .+.+||||| ++.+..+
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~t~~~~~~~~-~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~ 94 (195)
T 3pqc_A 20 PPLKGEVAFVGRSNVGKSSLLNALFNRKIAF-VSKTPGKTRSINFYLV-NS---KYYFVDLPGYGYAKVSKKERMLWKRL 94 (195)
T ss_dssp CCTTCEEEEEEBTTSSHHHHHHHHHTSCCSC-CCSSCCCCCCEEEEEE-TT---TEEEEECCCBSSSCCCHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHcCcccc-ccCCCCCccCeEEEEE-CC---cEEEEECCCCccccCChhhHHHHHHH
Confidence 4567899999999999999999999987422 112222 111112222 32 467999999 5556677
Q ss_pred HHHhcccC---CEEEEEEECCChhhHHH--HHHHHHHHHHhcCCCCCEEEEEecCCCCCcc---ccHHHHHHHHHhcCCC
Q psy549 115 RELSISTA---DAFVLVYAVDDASTWDV--VKDLREQIVNKRGLMVPIVVVGNKCELEFKD---VRREIAETIALYDWQC 186 (253)
Q Consensus 115 ~~~~~~~~---d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~ 186 (253)
+..+++.+ |++++|+|+++..+... +..|+.. .++|+++|+||+|+.+.. ...+....+......+
T Consensus 95 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 168 (195)
T 3pqc_A 95 VEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS------LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEY 168 (195)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH------TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCS
T ss_pred HHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHH------cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCC
Confidence 77777766 99999999987644332 2333322 258999999999997652 2233344444433567
Q ss_pred cEEEeccCCCCCHHHHHHHHHHHHH
Q psy549 187 GFVECSAKENYNIVQVFKELLAQAK 211 (253)
Q Consensus 187 ~~~~~Sa~~~~~i~~l~~~l~~~~~ 211 (253)
+++++||++|.|++++|++|.+.+.
T Consensus 169 ~~~~~Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 169 TIIPTSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred ceEEEecCCCCCHHHHHHHHHHHhh
Confidence 9999999999999999999998874
No 116
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.91 E-value=2.7e-24 Score=166.07 Aligned_cols=156 Identities=20% Similarity=0.156 Sum_probs=112.5
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCC-----------CCCChhhHHHh
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSG-----------AYQFPAMRELS 118 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g-----------~~~~~~~~~~~ 118 (253)
++|+|+|++|||||||+++|.+..+...+.+++ ......+.+ + .+.+||||| ++.+...+..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~-t~~~~~~~~-~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGV-TRKIIEIEW-K----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 75 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTC-TTSCEEEEE-T----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCc-cceeEEEec-C----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence 689999999999999999999988754433322 222233333 2 578999999 45566677777
Q ss_pred ccc-CCEEEEEEECCChhhHHHH-HHHHHH--------H-HHhcCCCCCEEEEEecCCCCCccccHHHHHHHHHhcCC--
Q psy549 119 IST-ADAFVLVYAVDDASTWDVV-KDLREQ--------I-VNKRGLMVPIVVVGNKCELEFKDVRREIAETIALYDWQ-- 185 (253)
Q Consensus 119 ~~~-~d~~i~v~d~~~~~s~~~~-~~~~~~--------~-~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-- 185 (253)
++. ++++++|+++.+..++..+ ..|... + ......++|+++|+||+|+.... .+..+.++.....
T Consensus 76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~ 153 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV--QEVINFLAEKFEVPL 153 (190)
T ss_dssp HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH--HHHHHHHHHHHTCCG
T ss_pred HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH--HHHHHHHHHHhhhhh
Confidence 776 7877777777777788775 556542 1 22223579999999999997654 4455556552221
Q ss_pred ----CcEEEeccCCCCCHHHHHHHHHHHHHHh
Q psy549 186 ----CGFVECSAKENYNIVQVFKELLAQAKVQ 213 (253)
Q Consensus 186 ----~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 213 (253)
.++++|||++|.|++++|++|++.+.+.
T Consensus 154 ~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 185 (190)
T 2cxx_A 154 SEIDKVFIPISAKFGDNIERLKNRIFEVIRER 185 (190)
T ss_dssp GGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred hccCCcEEEEecCCCCCHHHHHHHHHHhcchh
Confidence 2579999999999999999999988654
No 117
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.90 E-value=1.2e-23 Score=170.53 Aligned_cols=154 Identities=15% Similarity=0.195 Sum_probs=115.8
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCCC-CCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChh------hHHHhc-
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDRF-ISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPA------MRELSI- 119 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~------~~~~~~- 119 (253)
..++|+++|++|||||||+|+|++..+ ...++.++.+.....+.. ++ +.+.+||+||...+.. ....++
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~-~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~ 80 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTY-KG--YTINLIDLPGTYSLGYSSIDEKIARDYLL 80 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEE-TT--EEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEE-CC--eEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence 468999999999999999999998765 444555565666666655 33 6889999999988764 224444
Q ss_pred -ccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHHhcCCCcEEEeccCCCCC
Q psy549 120 -STADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIALYDWQCGFVECSAKENYN 198 (253)
Q Consensus 120 -~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 198 (253)
..+|++++|+|+++.++. ..|...+.. .++|+++|+||+|+..........+.++. ..+++++++||++|.|
T Consensus 81 ~~~~d~ii~V~D~t~~~~~---~~~~~~l~~---~~~pvilv~NK~Dl~~~~~i~~~~~~l~~-~lg~~vi~~SA~~g~g 153 (258)
T 3a1s_A 81 KGDADLVILVADSVNPEQS---LYLLLEILE---MEKKVILAMTAIDEAKKTGMKIDRYELQK-HLGIPVVFTSSVTGEG 153 (258)
T ss_dssp HSCCSEEEEEEETTSCHHH---HHHHHHHHT---TTCCEEEEEECHHHHHHTTCCBCHHHHHH-HHCSCEEECCTTTCTT
T ss_pred hcCCCEEEEEeCCCchhhH---HHHHHHHHh---cCCCEEEEEECcCCCCccchHHHHHHHHH-HcCCCEEEEEeeCCcC
Confidence 589999999999986543 335544443 46899999999998654211123455665 4568999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy549 199 IVQVFKELLAQAK 211 (253)
Q Consensus 199 i~~l~~~l~~~~~ 211 (253)
++++|+++.+.+.
T Consensus 154 i~el~~~i~~~~~ 166 (258)
T 3a1s_A 154 LEELKEKIVEYAQ 166 (258)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998775
No 118
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.90 E-value=3.4e-24 Score=173.60 Aligned_cols=150 Identities=18% Similarity=0.232 Sum_probs=114.0
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCCC-CCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChh----------hHHHh
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDRF-ISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPA----------MRELS 118 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~----------~~~~~ 118 (253)
.+|+++|++|||||||+|+|++... +...+.++.+.....+.+ ++. .+.+|||||...+.. ....+
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~-~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~ 78 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLL-GEH--LIEITDLPGVYSLVANAEGISQDEQIAAQS 78 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEE-TTE--EEEEEECCCCSSCC------CHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEE-CCe--EEEEEeCCCcccccccccCCCHHHHHHHHH
Confidence 5899999999999999999998764 455666777777778877 443 789999999988764 34445
Q ss_pred c--ccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHHhcCCCcEEEeccCCC
Q psy549 119 I--STADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIALYDWQCGFVECSAKEN 196 (253)
Q Consensus 119 ~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 196 (253)
+ +.+|++|+|+|+++.+.+..+..++ ...++|+++|+||+|+............+.. ..+++++++||++|
T Consensus 79 ~~~~~~d~vi~VvDas~~~~~~~l~~~l------~~~~~pvilv~NK~Dl~~~~~~~~~~~~l~~-~lg~~vi~~SA~~g 151 (256)
T 3iby_A 79 VIDLEYDCIINVIDACHLERHLYLTSQL------FELGKPVVVALNMMDIAEHRGISIDTEKLES-LLGCSVIPIQAHKN 151 (256)
T ss_dssp HHHSCCSEEEEEEEGGGHHHHHHHHHHH------TTSCSCEEEEEECHHHHHHTTCEECHHHHHH-HHCSCEEECBGGGT
T ss_pred HhhCCCCEEEEEeeCCCchhHHHHHHHH------HHcCCCEEEEEEChhcCCcCCcHHHHHHHHH-HcCCCEEEEECCCC
Confidence 5 8899999999999865544333222 2246899999999998654222222344555 45789999999999
Q ss_pred CCHHHHHHHHHHH
Q psy549 197 YNIVQVFKELLAQ 209 (253)
Q Consensus 197 ~~i~~l~~~l~~~ 209 (253)
.|++++|+++.+.
T Consensus 152 ~gi~el~~~i~~~ 164 (256)
T 3iby_A 152 IGIPALQQSLLHC 164 (256)
T ss_dssp BSHHHHHHHHHTC
T ss_pred CCHHHHHHHHHhh
Confidence 9999999999875
No 119
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.90 E-value=9.8e-24 Score=172.13 Aligned_cols=152 Identities=16% Similarity=0.201 Sum_probs=112.9
Q ss_pred cceEEEECCCCCCHHHHHHHHHhCC-CCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCCh------hhHHHhcc-
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYDR-FISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFP------AMRELSIS- 120 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~------~~~~~~~~- 120 (253)
.++|+++|++|||||||+|+|++.. ++..+++++.+.....+ +. .+.+.+|||||++.+. .....++.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~---~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~ 78 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLV---KK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS 78 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEEC---TT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEE---ec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence 5799999999999999999999865 45666655554433333 32 4578999999999875 34455565
Q ss_pred -cCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHHhcCCCcEEEeccCCCCCH
Q psy549 121 -TADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIALYDWQCGFVECSAKENYNI 199 (253)
Q Consensus 121 -~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 199 (253)
.+|++++|+|+++.+.+ ..|...+.. .++|+++|+||+|+............++. ..+++++++||++|.|+
T Consensus 79 ~~~d~vi~V~D~t~~e~~---~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~-~lg~~vi~~SA~~g~gi 151 (272)
T 3b1v_A 79 QRADSILNVVDATNLERN---LYLTTQLIE---TGIPVTIALNMIDVLDGQGKKINVDKLSY-HLGVPVVATSALKQTGV 151 (272)
T ss_dssp TCCSEEEEEEEGGGHHHH---HHHHHHHHH---TCSCEEEEEECHHHHHHTTCCCCHHHHHH-HHTSCEEECBTTTTBSH
T ss_pred CCCCEEEEEecCCchHhH---HHHHHHHHh---cCCCEEEEEEChhhCCcCCcHHHHHHHHH-HcCCCEEEEEccCCCCH
Confidence 69999999999886543 445555544 56899999999998654211123455655 45689999999999999
Q ss_pred HHHHHHHHHHHH
Q psy549 200 VQVFKELLAQAK 211 (253)
Q Consensus 200 ~~l~~~l~~~~~ 211 (253)
+++|+++++.+.
T Consensus 152 ~el~~~i~~~~~ 163 (272)
T 3b1v_A 152 DQVVKKAAHTTT 163 (272)
T ss_dssp HHHHHHHHHSCT
T ss_pred HHHHHHHHHHHh
Confidence 999999988653
No 120
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.90 E-value=6.8e-23 Score=169.58 Aligned_cols=156 Identities=21% Similarity=0.187 Sum_probs=113.1
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCCC--CCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCC--------hhhHH
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDRF--ISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQF--------PAMRE 116 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~--------~~~~~ 116 (253)
....+|+|+|.+|||||||+|+|++..+ ....+.|+.+.....+.. + ...+.||||||..+. .....
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~-~--~~~l~l~DTpG~~~~~~~l~~~~~~~~~ 81 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTE-G--RRQIVFVDTPGLHKPMDALGEFMDQEVY 81 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEE-T--TEEEEEEECCCCCCCCSHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEe-C--CcEEEEecCccccchhhHHHHHHHHHHH
Confidence 3456899999999999999999999876 345556666655555544 3 367899999998873 44555
Q ss_pred HhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccc-cHHHHHHHHHhcCCCcEEEeccCC
Q psy549 117 LSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDV-RREIAETIALYDWQCGFVECSAKE 195 (253)
Q Consensus 117 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~Sa~~ 195 (253)
.+++.+|++++|+|++++.+.. ..|+.........++|+++|+||+|+..... ..+..+.+ ....+++++||++
T Consensus 82 ~~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~---~~~~~~~~iSA~~ 156 (301)
T 1wf3_A 82 EALADVNAVVWVVDLRHPPTPE--DELVARALKPLVGKVPILLVGNKLDAAKYPEEAMKAYHEL---LPEAEPRMLSALD 156 (301)
T ss_dssp HHTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGTTTSCEEEEEECGGGCSSHHHHHHHHHHT---STTSEEEECCTTC
T ss_pred HHHhcCCEEEEEEECCCCCChH--HHHHHHHHHhhcCCCCEEEEEECcccCCchHHHHHHHHHh---cCcCcEEEEeCCC
Confidence 6789999999999999875543 3444322222224689999999999875422 12222222 2345789999999
Q ss_pred CCCHHHHHHHHHHHH
Q psy549 196 NYNIVQVFKELLAQA 210 (253)
Q Consensus 196 ~~~i~~l~~~l~~~~ 210 (253)
|.|++++|+++.+.+
T Consensus 157 g~gv~~l~~~l~~~l 171 (301)
T 1wf3_A 157 ERQVAELKADLLALM 171 (301)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHhc
Confidence 999999999998765
No 121
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.89 E-value=1.4e-23 Score=171.71 Aligned_cols=154 Identities=15% Similarity=0.217 Sum_probs=114.3
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCCC-CCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChh----------hHH
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDRF-ISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPA----------MRE 116 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~----------~~~ 116 (253)
..++|+|+|++|||||||+|+|++..+ +...+.++.+.....+.+ ++. .+.+|||||...+.. ...
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~-~~~--~~~liDtpG~~~~~~~~~~~~~~e~i~~ 78 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFST-TDH--QVTLVDLPGTYSLTTISSQTSLDEQIAC 78 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEEC-SSC--EEEEEECCCCSCSCC----CCHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEe-CCC--ceEEEECcCCCccccccccCCHHHHHHH
Confidence 358999999999999999999998775 445556666777777777 443 578999999988762 122
Q ss_pred Hh--cccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHHhcCCCcEEEeccC
Q psy549 117 LS--ISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIALYDWQCGFVECSAK 194 (253)
Q Consensus 117 ~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 194 (253)
.+ .+.+|++|+|+|+++.+.... |...+... ++|+++|+||+|+..........+.+.. ..+++++++||+
T Consensus 79 ~~~~~~~~d~ii~VvD~~~~~~~~~---~~~~l~~~---~~p~ivv~NK~Dl~~~~~~~~~~~~l~~-~lg~~~i~~SA~ 151 (274)
T 3i8s_A 79 HYILSGDADLLINVVDASNLERNLY---LTLQLLEL---GIPCIVALNMLDIAEKQNIRIEIDALSA-RLGCPVIPLVST 151 (274)
T ss_dssp HHHHHTCCSEEEEEEEGGGHHHHHH---HHHHHHHH---TCCEEEEEECHHHHHHTTEEECHHHHHH-HHTSCEEECCCG
T ss_pred HHHhhcCCCEEEEEecCCChHHHHH---HHHHHHhc---CCCEEEEEECccchhhhhHHHHHHHHHH-hcCCCEEEEEcC
Confidence 22 368999999999998654433 33333332 5899999999998654222222345555 456899999999
Q ss_pred CCCCHHHHHHHHHHHHH
Q psy549 195 ENYNIVQVFKELLAQAK 211 (253)
Q Consensus 195 ~~~~i~~l~~~l~~~~~ 211 (253)
+|.|++++|+++.+.+.
T Consensus 152 ~g~gi~el~~~i~~~~~ 168 (274)
T 3i8s_A 152 RGRGIEALKLAIDRYKA 168 (274)
T ss_dssp GGHHHHHHHHHHHTCCC
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999887663
No 122
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.89 E-value=5.9e-23 Score=162.82 Aligned_cols=162 Identities=14% Similarity=0.115 Sum_probs=112.1
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCC---CCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCC----------Ch
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDR---FISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQ----------FP 112 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~ 112 (253)
....++|+|+|.+|+|||||+++|++.. .....+.++.......+.. .....+.||||||... +.
T Consensus 26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 103 (223)
T 4dhe_A 26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGP--AAEPVAHLVDLPGYGYAEVPGAAKAHWE 103 (223)
T ss_dssp CCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESC--TTSCSEEEEECCCCCSSCCCSTHHHHHH
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecC--CCCCcEEEEcCCCCCcccCChhhHHHHH
Confidence 3457899999999999999999999986 3444444544443333331 2235789999999543 34
Q ss_pred hhHHHhccc---CCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccc----cHHHHHHHHHh---
Q psy549 113 AMRELSIST---ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDV----RREIAETIALY--- 182 (253)
Q Consensus 113 ~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----~~~~~~~~~~~--- 182 (253)
.+...+++. +|++++|+|+++..+... ..|+..+.. .++|+++|+||+|+..... .....+.+...
T Consensus 104 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~ 179 (223)
T 4dhe_A 104 QLLSSYLQTRPQLCGMILMMDARRPLTELD-RRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDA 179 (223)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcCcCEEEEEEeCCCCCCHHH-HHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhc
Confidence 555556665 788999999987644222 334443333 5689999999999976522 22223334432
Q ss_pred --cCCCcEEEeccCCCCCHHHHHHHHHHHHHHh
Q psy549 183 --DWQCGFVECSAKENYNIVQVFKELLAQAKVQ 213 (253)
Q Consensus 183 --~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 213 (253)
....+++++||++|.|++++|++|.+.+...
T Consensus 180 ~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~ 212 (223)
T 4dhe_A 180 GYAGKLTVQLFSALKRTGLDDAHALIESWLRPA 212 (223)
T ss_dssp TCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred ccCCCCeEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence 3678899999999999999999999988443
No 123
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.89 E-value=2.3e-23 Score=185.64 Aligned_cols=163 Identities=15% Similarity=0.146 Sum_probs=117.3
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeee-------eEEcC-CCcEEEEEEEeCCCCCCChhhHHH
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRG-------EYELP-DGAQLTLDILDTSGAYQFPAMREL 117 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~-------~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~ 117 (253)
....+||+++|.+|||||||+++|.+..+...+.+|....+.. .+.+. ++..+.+.+||+||++.+......
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~ 117 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF 117 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence 3567999999999999999999999988876666665533221 22221 234578999999999999999999
Q ss_pred hcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCC
Q psy549 118 SISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKEN 196 (253)
Q Consensus 118 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 196 (253)
+++.+|++|+|||+++. +.+..|+..+.... .++|+++|+||+|+... .+..+..+.+.. ..+.+++++||++|
T Consensus 118 ~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~-~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~-~~~~~~~~vSA~~g 192 (535)
T 3dpu_A 118 FMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYG-GKSPVIVVMNKIDENPSYNIEQKKINERFP-AIENRFHRISCKNG 192 (535)
T ss_dssp HHHSSEEEEEEECGGGG---GGHHHHHHHHHHHS-SSCCEEEEECCTTTCTTCCCCHHHHHHHCG-GGTTCEEECCC---
T ss_pred HccCCcEEEEEEeCCCc---hhHHHHHHHHHHhC-CCCCEEEEEECCCcccccccCHHHHHHHHH-hcCCceEEEecCcc
Confidence 99999999999998765 45577888777754 46899999999999765 455666666665 55678999999999
Q ss_pred CCHHHHHHHHHHHHHHh
Q psy549 197 YNIVQVFKELLAQAKVQ 213 (253)
Q Consensus 197 ~~i~~l~~~l~~~~~~~ 213 (253)
.|++++|+++.+.+...
T Consensus 193 ~gi~eL~~~l~~~~~~~ 209 (535)
T 3dpu_A 193 DGVESIAKSLKSAVLHP 209 (535)
T ss_dssp --CTTHHHHHHHHHTCT
T ss_pred cCHHHHHHHHHHHHhcc
Confidence 99999999999988553
No 124
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.89 E-value=8e-23 Score=178.58 Aligned_cols=156 Identities=17% Similarity=0.180 Sum_probs=99.9
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCC--CCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHH--------H
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDR--FISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRE--------L 117 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~--------~ 117 (253)
..++|+|+|.+|||||||+|+|++.. ++..++.|+.+.....+.+ ++ +.+.+|||||..++...+. .
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~-~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~ 308 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIH-DK--TMFRLTDTAGLREAGEEIEHEGIRRSRM 308 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEE-TT--EEEEEEC--------------------C
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEE-CC--eEEEEEECCCCCcchhHHHHHHHHHHHh
Confidence 45899999999999999999999875 4677788888888888888 55 5789999999987765443 2
Q ss_pred hcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHHhcCCCcEEEeccCCCC
Q psy549 118 SISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIALYDWQCGFVECSAKENY 197 (253)
Q Consensus 118 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 197 (253)
+++.+|++++|+|++++.++..+..+...+... .++|+++|+||+|+....... .+.+.... ..+++++||++|.
T Consensus 309 ~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l--~~~piIvV~NK~Dl~~~~~~~--~~~l~~~~-~~~~i~vSAktg~ 383 (476)
T 3gee_A 309 KMAEADLILYLLDLGTERLDDELTEIRELKAAH--PAAKFLTVANKLDRAANADAL--IRAIADGT-GTEVIGISALNGD 383 (476)
T ss_dssp CCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC--TTSEEEEEEECTTSCTTTHHH--HHHHHHHH-TSCEEECBTTTTB
T ss_pred hcccCCEEEEEEECCCCcchhhhHHHHHHHHhc--CCCCEEEEEECcCCCCccchh--HHHHHhcC-CCceEEEEECCCC
Confidence 678899999999999988775333333222222 268999999999997653221 23444422 3789999999999
Q ss_pred CHHHHHHHHHHHHH
Q psy549 198 NIVQVFKELLAQAK 211 (253)
Q Consensus 198 ~i~~l~~~l~~~~~ 211 (253)
|++++|++|.+.+.
T Consensus 384 GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 384 GIDTLKQHMGDLVK 397 (476)
T ss_dssp SHHHHHHHHTHHHH
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999999886
No 125
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.89 E-value=5.5e-23 Score=178.78 Aligned_cols=160 Identities=18% Similarity=0.209 Sum_probs=117.6
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCCC--CCCccccceeeeeeeEEcCCCcEEEEEEEeCCCC----------CCChhh
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDRF--ISRYKETVEELHRGEYELPDGAQLTLDILDTSGA----------YQFPAM 114 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~----------~~~~~~ 114 (253)
...++|+|+|++|||||||+|+|++... ...++.++.+.....+.+ ++. .+.||||||+ +.|...
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~-~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~ 249 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTY-NQQ--EFVIVDTAGMRKKGKVYETTEKYSVL 249 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEE-TTE--EEEETTHHHHTCBTTBCCCCSHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEE-CCe--EEEEEECCCcCcCccccchHHHHHHH
Confidence 3568999999999999999999999775 567778888888888887 554 5799999997 445555
Q ss_pred HH-HhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCcc-cc-HHHHHHHHHh---cCCCcE
Q psy549 115 RE-LSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKD-VR-REIAETIALY---DWQCGF 188 (253)
Q Consensus 115 ~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~-~~~~~~~~~~---~~~~~~ 188 (253)
+. .+++.+|++++|+|++++.++++. .|...+.. .++|+++|+||+|+.+.. .. .+..+.+... ....++
T Consensus 250 ~~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~ 325 (436)
T 2hjg_A 250 RALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPI 325 (436)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCE
T ss_pred HHHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCE
Confidence 44 378899999999999998888774 46655544 568999999999997652 22 2233333321 346799
Q ss_pred EEeccCCCCCHHHHHHHHHHHHHHh
Q psy549 189 VECSAKENYNIVQVFKELLAQAKVQ 213 (253)
Q Consensus 189 ~~~Sa~~~~~i~~l~~~l~~~~~~~ 213 (253)
+++||++|.|++++|+.+.+.+...
T Consensus 326 ~~~SA~tg~~v~~l~~~i~~~~~~~ 350 (436)
T 2hjg_A 326 LFMSALTKKRIHTLMPAIIKASENH 350 (436)
T ss_dssp EECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred EEEecccCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999988654
No 126
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.88 E-value=2.1e-22 Score=164.58 Aligned_cols=157 Identities=18% Similarity=0.174 Sum_probs=115.9
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCCC-CCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChh------hHHHhc-
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDRF-ISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPA------MRELSI- 119 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~------~~~~~~- 119 (253)
..++|+|+|++|||||||+|+|++..+ ....+.++.+.....+.+ ++ ..+.+||+||...+.. ....++
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~-~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 78 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEY-RE--KEFLVVDLPGIYSLTAHSIDELIARNFIL 78 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEE-TT--EEEEEEECCCCSCCCSSCHHHHHHHHHHH
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEE-CC--ceEEEEeCCCccccccCCHHHHHHHHhhh
Confidence 358999999999999999999998765 334445555666667776 44 3589999999988765 444455
Q ss_pred -ccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHHhcCCCcEEEeccCCCCC
Q psy549 120 -STADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIALYDWQCGFVECSAKENYN 198 (253)
Q Consensus 120 -~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 198 (253)
..+|++++|+|+++.. ....|+..+... ..+|+++|+||+|+............+.. ..+++++++|+++|.|
T Consensus 79 ~~~~d~vi~v~D~~~~~---~~~~~~~~~~~~--~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~-~lg~~~~~~Sa~~g~g 152 (271)
T 3k53_A 79 DGNADVIVDIVDSTCLM---RNLFLTLELFEM--EVKNIILVLNKFDLLKKKGAKIDIKKMRK-ELGVPVIPTNAKKGEG 152 (271)
T ss_dssp TTCCSEEEEEEEGGGHH---HHHHHHHHHHHT--TCCSEEEEEECHHHHHHHTCCCCHHHHHH-HHSSCEEECBGGGTBT
T ss_pred ccCCcEEEEEecCCcch---hhHHHHHHHHhc--CCCCEEEEEEChhcCcccccHHHHHHHHH-HcCCcEEEEEeCCCCC
Confidence 6899999999998853 233344444432 22899999999997654211112455655 4578999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q psy549 199 IVQVFKELLAQAKVQ 213 (253)
Q Consensus 199 i~~l~~~l~~~~~~~ 213 (253)
+.++|+++.+.+...
T Consensus 153 i~~l~~~i~~~~~~~ 167 (271)
T 3k53_A 153 VEELKRMIALMAEGK 167 (271)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999987544
No 127
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.87 E-value=8.4e-22 Score=172.23 Aligned_cols=162 Identities=17% Similarity=0.196 Sum_probs=119.1
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCC--CCCCccccceeeeeeeEEcCCCcEEEEEEEeCCC----------CCCChhh
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDR--FISRYKETVEELHRGEYELPDGAQLTLDILDTSG----------AYQFPAM 114 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g----------~~~~~~~ 114 (253)
...++|+++|.+|+|||||+++|++.. ....++.++.+.....+.+ ++. .++|||||| +++|...
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~-~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~ 269 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTY-NQQ--EFVIVDTAGMRKKGKVYETTEKYSVL 269 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEE-TTE--EEEETTGGGTTTBTTBCCCCSHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEE-CCc--eEEEEECCCCCcCcccchHHHHHHHH
Confidence 457899999999999999999999765 3667778888888888887 554 789999999 6777776
Q ss_pred HHH-hcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc-cccHHHHHHHHHhc----CCCcE
Q psy549 115 REL-SISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIALYD----WQCGF 188 (253)
Q Consensus 115 ~~~-~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~----~~~~~ 188 (253)
+.. +++.+|++|+|+|++++..... ..|+..+.. .++|+++|+||+|+... ....+......... ..+++
T Consensus 270 ~~~~~~~~ad~~llviD~~~~~~~~~-~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (456)
T 4dcu_A 270 RALKAIDRSEVVAVVLDGEEGIIEQD-KRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPI 345 (456)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHH-HHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCE
T ss_pred HHHHHHhhCCEEEEEEeCCCCcCHHH-HHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCE
Confidence 654 7889999999999998655332 344444443 56899999999999764 33323333322212 35899
Q ss_pred EEeccCCCCCHHHHHHHHHHHHHHhcc
Q psy549 189 VECSAKENYNIVQVFKELLAQAKVQYN 215 (253)
Q Consensus 189 ~~~Sa~~~~~i~~l~~~l~~~~~~~~~ 215 (253)
+++||++|.|++++|+++.+.+.....
T Consensus 346 ~~~SA~~g~gv~~l~~~i~~~~~~~~~ 372 (456)
T 4dcu_A 346 LFMSALTKKRIHTLMPAIIKASENHSL 372 (456)
T ss_dssp EECCTTTCTTGGGHHHHHHHHHHHHTC
T ss_pred EEEcCCCCcCHHHHHHHHHHHHHHhcc
Confidence 999999999999999999998866543
No 128
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.87 E-value=1.1e-21 Score=171.62 Aligned_cols=152 Identities=20% Similarity=0.262 Sum_probs=120.1
Q ss_pred cceEEEECCCCCCHHHHHHHHHhCC--CCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCC-CChh--------hHHH
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYDR--FISRYKETVEELHRGEYELPDGAQLTLDILDTSGAY-QFPA--------MREL 117 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~-~~~~--------~~~~ 117 (253)
.++|+|+|.+|||||||+|+|.+.. ++.+++.|+.+.....+.+ ++ ..+.+|||||.. ++.. ....
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~-~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~ 319 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVI-RG--ILFRIVDTAGVRSETNDLVERLGIERTLQ 319 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEE-TT--EEEEEEESSCCCSSCCTTCCCCCHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEec-CC--eEEEEEECCCccccchhhHHHHHHHHHHH
Confidence 4899999999999999999999875 4778888999998888888 65 468999999988 6542 2345
Q ss_pred hcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHHhcCCCcEEEeccCCCC
Q psy549 118 SISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIALYDWQCGFVECSAKENY 197 (253)
Q Consensus 118 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 197 (253)
+++.+|++|+|+|++++.+++... ++..+ .++|+++|+||+|+... ...+....+. .+..+++++||++|.
T Consensus 320 ~~~~aD~vl~VvD~s~~~s~~~~~-il~~l-----~~~piivV~NK~DL~~~-~~~~~~~~~~--~~~~~~i~iSAktg~ 390 (482)
T 1xzp_A 320 EIEKADIVLFVLDASSPLDEEDRK-ILERI-----KNKRYLVVINKVDVVEK-INEEEIKNKL--GTDRHMVKISALKGE 390 (482)
T ss_dssp HHHHCSEEEEEEETTSCCCHHHHH-HHHHH-----TTSSEEEEEEECSSCCC-CCHHHHHHHH--TCSTTEEEEEGGGTC
T ss_pred HhhcccEEEEEecCCCCCCHHHHH-HHHHh-----cCCCEEEEEECcccccc-cCHHHHHHHh--cCCCcEEEEECCCCC
Confidence 788999999999999987776533 23322 36899999999999764 3333333332 345789999999999
Q ss_pred CHHHHHHHHHHHHHH
Q psy549 198 NIVQVFKELLAQAKV 212 (253)
Q Consensus 198 ~i~~l~~~l~~~~~~ 212 (253)
|++++|++|.+.+..
T Consensus 391 Gi~eL~~~l~~~~~~ 405 (482)
T 1xzp_A 391 GLEKLEESIYRETQE 405 (482)
T ss_dssp CHHHHHHHHHHHTHH
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999997653
No 129
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.87 E-value=1.3e-22 Score=174.43 Aligned_cols=160 Identities=20% Similarity=0.190 Sum_probs=116.2
Q ss_pred CCCCCCcceEEEECCCCCCHHHHHHHHHhCCC--CCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhh------
Q psy549 43 VGLQKDKRRVVVMGGARVGKSSIISQFLYDRF--ISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAM------ 114 (253)
Q Consensus 43 ~~~~~~~~~I~iiG~~~~GKSsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~------ 114 (253)
..+....++|+|+|++|+|||||+++|++..+ ......++.+.....+.+ ++. ..+.+|||||++++..+
T Consensus 28 ~~~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~-~~~-~~l~liDTpG~~d~~~l~~~~~~ 105 (423)
T 3qq5_A 28 LPDAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMEL-HPI-GPVTLVDTPGLDDVGELGRLRVE 105 (423)
T ss_dssp C---CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEE-TTT-EEEEEEECSSTTCCCTTCCCCHH
T ss_pred cCCCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEE-CCC-CeEEEEECcCCCcccchhHHHHH
Confidence 33456789999999999999999999998875 455666777777777777 333 26899999999877544
Q ss_pred -HHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHHhcCCCcEEEecc
Q psy549 115 -RELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIALYDWQCGFVECSA 193 (253)
Q Consensus 115 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 193 (253)
...++..+|++|+|+|+... .....|+..+... ++|+++|+||+|+...... +..+.+.. ..+++++++||
T Consensus 106 ~~~~~l~~aD~vllVvD~~~~---~~~~~~l~~l~~~---~~piIvV~NK~Dl~~~~~~-~~~~~l~~-~~g~~v~~vSA 177 (423)
T 3qq5_A 106 KARRVFYRADCGILVTDSAPT---PYEDDVVNLFKEM---EIPFVVVVNKIDVLGEKAE-ELKGLYES-RYEAKVLLVSA 177 (423)
T ss_dssp HHHHHHTSCSEEEEECSSSCC---HHHHHHHHHHHHT---TCCEEEECCCCTTTTCCCT-HHHHHSSC-CTTCCCCCCSS
T ss_pred HHHHHHhcCCEEEEEEeCCCh---HHHHHHHHHHHhc---CCCEEEEEeCcCCCCccHH-HHHHHHHH-HcCCCEEEEEC
Confidence 34578899999999999333 2335566665553 6899999999999876443 55566655 56789999999
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q psy549 194 KENYNIVQVFKELLAQAKV 212 (253)
Q Consensus 194 ~~~~~i~~l~~~l~~~~~~ 212 (253)
++|.|++++|++|.+.+..
T Consensus 178 ktg~gI~eL~~~L~~~l~~ 196 (423)
T 3qq5_A 178 LQKKGFDDIGKTISEILPG 196 (423)
T ss_dssp CCTTSTTTHHHHHHHHSCC
T ss_pred CCCCCHHHHHHHHHHhhhh
Confidence 9999999999999998843
No 130
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.87 E-value=2.3e-21 Score=168.75 Aligned_cols=154 Identities=19% Similarity=0.275 Sum_probs=106.2
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCC--CCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCC---------hhhHHHh
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDR--FISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQF---------PAMRELS 118 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~---------~~~~~~~ 118 (253)
.+|+|+|.||||||||+|+|++.. ++.+.+.++++.....+.+ ++. .+++|||||.+.. ......+
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~-~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 78 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEW-YGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNM 78 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEE-TTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEE-CCe--EEEEEECCCccccccchHHHHHHHHHHHH
Confidence 489999999999999999999876 3677788888888888888 554 5789999998752 3455668
Q ss_pred cccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHHhcCCC-cEEEeccCCCC
Q psy549 119 ISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIALYDWQC-GFVECSAKENY 197 (253)
Q Consensus 119 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 197 (253)
++.+|++++|+|+.++.+..+ .++..+... .++|+++|+||+|+... ...+....+.. .+. +++++||++|.
T Consensus 79 ~~~ad~il~V~D~~~~~~~~d--~~i~~~l~~--~~~p~ilv~NK~D~~~~-~~~~~~~~~~~--lg~~~~~~iSA~~g~ 151 (439)
T 1mky_A 79 IREADLVLFVVDGKRGITKED--ESLADFLRK--STVDTILVANKAENLRE-FEREVKPELYS--LGFGEPIPVSAEHNI 151 (439)
T ss_dssp HTTCSEEEEEEETTTCCCHHH--HHHHHHHHH--HTCCEEEEEESCCSHHH-HHHHTHHHHGG--GSSCSCEECBTTTTB
T ss_pred HHhCCEEEEEEECCCCCCHHH--HHHHHHHHH--cCCCEEEEEeCCCCccc-cHHHHHHHHHh--cCCCCEEEEeccCCC
Confidence 999999999999988655433 222222221 35899999999997532 11122133333 233 68999999999
Q ss_pred CHHHHHHHHHHHHHHh
Q psy549 198 NIVQVFKELLAQAKVQ 213 (253)
Q Consensus 198 ~i~~l~~~l~~~~~~~ 213 (253)
|+.++|+++.+.+...
T Consensus 152 gv~~L~~~i~~~l~~~ 167 (439)
T 1mky_A 152 NLDTMLETIIKKLEEK 167 (439)
T ss_dssp SHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhcccc
Confidence 9999999999988643
No 131
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.87 E-value=2.3e-22 Score=158.92 Aligned_cols=143 Identities=13% Similarity=0.138 Sum_probs=101.9
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCCCCCC---ccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhccc-
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDRFISR---YKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST- 121 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~- 121 (253)
....++|+|+|++|+|||||+++|.+..+... +.++.. . +...+.+.+||+||++.+...+..+++.
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~--------~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 79 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA--------A-DYDGSGVTLVDFPGHVKLRYKLSDYLKTR 79 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEE--------T-TGGGSSCEEEECCCCGGGTHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEE--------E-EeeCceEEEEECCCcHHHHHHHHHHHHhc
Confidence 34678999999999999999999999876431 222211 1 1133578999999999999888888877
Q ss_pred ---CCEEEEEEECC-ChhhHHHHHHHHHHHHHh----cCCCCCEEEEEecCCCCCcccc-------HHHHHHHHHhcCCC
Q psy549 122 ---ADAFVLVYAVD-DASTWDVVKDLREQIVNK----RGLMVPIVVVGNKCELEFKDVR-------REIAETIALYDWQC 186 (253)
Q Consensus 122 ---~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~----~~~~~piilv~nK~Dl~~~~~~-------~~~~~~~~~~~~~~ 186 (253)
+|++|+|+|++ ++.+|.....|+..+... ...++|+++|+||+|+...... .+....++. ..+.
T Consensus 80 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~-~~~~ 158 (218)
T 1nrj_B 80 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIE-RRKK 158 (218)
T ss_dssp GGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHH-HHHH
T ss_pred cccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHH-HHhc
Confidence 89999999999 888888888888777664 3467999999999999876322 333444444 3456
Q ss_pred cEEEeccCCCCC
Q psy549 187 GFVECSAKENYN 198 (253)
Q Consensus 187 ~~~~~Sa~~~~~ 198 (253)
+++++|++++.+
T Consensus 159 ~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 159 SLNEVERKINEE 170 (218)
T ss_dssp HHHC--------
T ss_pred cccccccccccc
Confidence 789999998764
No 132
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.87 E-value=9.3e-22 Score=165.09 Aligned_cols=158 Identities=19% Similarity=0.157 Sum_probs=121.5
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCCC-CCCccccceeeeeeeEEcCCCcEEEEEEEeCCCC----CCChhhHHHhc---cc
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDRF-ISRYKETVEELHRGEYELPDGAQLTLDILDTSGA----YQFPAMRELSI---ST 121 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~----~~~~~~~~~~~---~~ 121 (253)
.+|+|+|.+|||||||+++|++... ..+++.++.......+.+.++ ..+.+||+||. ..+..+...++ +.
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~--~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~ 236 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG--RSFVMADLPGLIEGAHQGVGLGHQFLRHIER 236 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS--CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHH
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCC--ceEEEecCCCCcccccccchhHHHHHHHHHh
Confidence 4799999999999999999998764 456667777666777777433 36899999994 33444545554 45
Q ss_pred CCEEEEEEECCC---hhhHHHHHHHHHHHHHhcC--CCCCEEEEEecCCCCCccccHHHHHHHHHhcC-CCcEEEeccCC
Q psy549 122 ADAFVLVYAVDD---ASTWDVVKDLREQIVNKRG--LMVPIVVVGNKCELEFKDVRREIAETIALYDW-QCGFVECSAKE 195 (253)
Q Consensus 122 ~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~ 195 (253)
+|++|+|+|+++ ..++..+..|+..+..... ..+|+++|+||+|+.... +..+.+..... ..+++++||++
T Consensus 237 ~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~---e~~~~l~~~l~~~~~v~~iSA~t 313 (342)
T 1lnz_A 237 TRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA---ENLEAFKEKLTDDYPVFPISAVT 313 (342)
T ss_dssp CCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH---HHHHHHHHHCCSCCCBCCCSSCC
T ss_pred ccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH---HHHHHHHHHhhcCCCEEEEECCC
Confidence 999999999998 7888888888888877542 469999999999987532 33444544222 26899999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q psy549 196 NYNIVQVFKELLAQAKV 212 (253)
Q Consensus 196 ~~~i~~l~~~l~~~~~~ 212 (253)
+.|+++++.+|.+.+..
T Consensus 314 g~gi~eL~~~l~~~l~~ 330 (342)
T 1lnz_A 314 REGLRELLFEVANQLEN 330 (342)
T ss_dssp SSTTHHHHHHHHHHHTS
T ss_pred CcCHHHHHHHHHHHHhh
Confidence 99999999999998843
No 133
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.87 E-value=1.4e-20 Score=159.67 Aligned_cols=161 Identities=19% Similarity=0.226 Sum_probs=119.0
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCCC-CCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCCh---------hhHH
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDRF-ISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFP---------AMRE 116 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~---------~~~~ 116 (253)
...++|+++|.+|||||||+++|.+... ....+.++.......+.. + ...+.+|||||...+. ....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~-~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 241 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFED-G--YFRYQIIDTPGLLDRPISERNEIEKQAIL 241 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEE-T--TEEEEEEECTTTSSSCSTTSCHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEe-c--CceEEEEeCCCccccchhhhhHHHHHHHH
Confidence 3568999999999999999999998764 233444444444444444 3 3578999999976532 1222
Q ss_pred HhcccCCEEEEEEECCChh--hHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHHhcCCCcEEEeccC
Q psy549 117 LSISTADAFVLVYAVDDAS--TWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIALYDWQCGFVECSAK 194 (253)
Q Consensus 117 ~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 194 (253)
.....+|++++|+|+++.. ++.....|+..+..... ++|+++|+||+|+...... +....+.. ..+.+++++||+
T Consensus 242 ~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~~~~-~~~~~~~~-~~~~~~~~iSA~ 318 (357)
T 2e87_A 242 ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVADEENI-KRLEKFVK-EKGLNPIKISAL 318 (357)
T ss_dssp GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCCHHHH-HHHHHHHH-HTTCCCEECBTT
T ss_pred HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCChHHH-HHHHHHHH-hcCCCeEEEeCC
Confidence 3455799999999998876 67777788887776543 7899999999998764322 22333333 457889999999
Q ss_pred CCCCHHHHHHHHHHHHHHh
Q psy549 195 ENYNIVQVFKELLAQAKVQ 213 (253)
Q Consensus 195 ~~~~i~~l~~~l~~~~~~~ 213 (253)
+|.|++++|++|.+.+...
T Consensus 319 ~g~gi~~l~~~i~~~l~~~ 337 (357)
T 2e87_A 319 KGTGIDLVKEEIIKTLRPL 337 (357)
T ss_dssp TTBTHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHH
Confidence 9999999999999988654
No 134
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.86 E-value=1.4e-20 Score=162.06 Aligned_cols=164 Identities=15% Similarity=0.111 Sum_probs=115.1
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCCCCCC--ccccce--------------eeeeeeEEcC--CCcEEEEEEEeCCC
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDRFISR--YKETVE--------------ELHRGEYELP--DGAQLTLDILDTSG 107 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~--~~~t~~--------------~~~~~~~~~~--~~~~~~~~l~D~~g 107 (253)
..+.++|+++|++++|||||+++|++...... +..++. +......... ......+.||||||
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPG 84 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPG 84 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCC
Confidence 45679999999999999999999998543211 111100 0000000000 11236889999999
Q ss_pred CCCChhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHHhc----
Q psy549 108 AYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIALYD---- 183 (253)
Q Consensus 108 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~---- 183 (253)
+++|...+...+..+|++|+|+|++++.++.....|+..+.... ..|+++|+||+|+.+.....+..+.+....
T Consensus 85 h~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~ 162 (403)
T 3sjy_A 85 HEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTW 162 (403)
T ss_dssp CGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTST
T ss_pred cHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECccccchHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999876666666666555432 258999999999987532223333332211
Q ss_pred -CCCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy549 184 -WQCGFVECSAKENYNIVQVFKELLAQAK 211 (253)
Q Consensus 184 -~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 211 (253)
..++++++||++|.|+++++++|.+.+.
T Consensus 163 ~~~~~ii~vSA~~g~gi~~L~~~l~~~l~ 191 (403)
T 3sjy_A 163 AENVPIIPVSALHKINIDSLIEGIEEYIK 191 (403)
T ss_dssp TTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred CCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence 2678999999999999999999988663
No 135
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.85 E-value=2.3e-20 Score=162.35 Aligned_cols=160 Identities=22% Similarity=0.194 Sum_probs=111.6
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCCC--CCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChh-----------
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDRF--ISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPA----------- 113 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~----------- 113 (253)
...++|+|+|++|||||||+|+|++... +...+.++.+...+.+.+ ++. .+.+|||+|..++..
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~-~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~ 254 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFI-DGR--KYVFVDTAGLRRKSRVEPRTVEKYSN 254 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEE-TTE--EEEESSCSCC-----------CCSCC
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEE-CCE--EEEEEECCCCccccccchhhHHHHHH
Confidence 3568999999999999999999999764 677778888888888888 665 578999999754322
Q ss_pred hH-HHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCcc-c-cHHHHHHHHHh---cCCCc
Q psy549 114 MR-ELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKD-V-RREIAETIALY---DWQCG 187 (253)
Q Consensus 114 ~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~-~~~~~~~~~~~---~~~~~ 187 (253)
.. ..+++.+|++++|+|+.++.++... .+...+.. .++|+++|+||+|+.... . ..+..+.+... ....+
T Consensus 255 ~~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (439)
T 1mky_A 255 YRVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSP 330 (439)
T ss_dssp HHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSC
T ss_pred HHHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCc
Confidence 11 2367789999999999987665542 22232222 468999999999987642 2 22222222221 34678
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHHh
Q psy549 188 FVECSAKENYNIVQVFKELLAQAKVQ 213 (253)
Q Consensus 188 ~~~~Sa~~~~~i~~l~~~l~~~~~~~ 213 (253)
++++||++|.|++++|+.+.+.+...
T Consensus 331 ~~~~SA~~g~gv~~l~~~i~~~~~~~ 356 (439)
T 1mky_A 331 LIFTSADKGWNIDRMIDAMNLAYASY 356 (439)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999877654
No 136
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.85 E-value=3.3e-21 Score=167.80 Aligned_cols=153 Identities=20% Similarity=0.288 Sum_probs=108.7
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCC--CCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHH--------
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDR--FISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMREL-------- 117 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~-------- 117 (253)
..++|+|+|++|+|||||+|+|++.. +..+.+.++.+.....+.+ ++ +.+.+|||||..++......
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~-~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~ 299 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVV-GG--IPVQVLDTAGIRETSDQVEKIGVERSRQ 299 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEE-TT--EEEEECC--------------------C
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEE-CC--EEEEEEECCccccchhHHHHHHHHHHhh
Confidence 45899999999999999999999864 3666777888888888888 65 46799999998766544333
Q ss_pred hcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHHhcCCCcEEEeccCCCC
Q psy549 118 SISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIALYDWQCGFVECSAKENY 197 (253)
Q Consensus 118 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 197 (253)
.+..+|++++|+|++++.++.. ..|+..+ ...|+++|+||+|+....... .+.......+++++||++|.
T Consensus 300 ~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l-----~~~piivV~NK~Dl~~~~~~~----~~~~~~~~~~~i~iSAktg~ 369 (462)
T 3geh_A 300 AANTADLVLLTIDAATGWTTGD-QEIYEQV-----KHRPLILVMNKIDLVEKQLIT----SLEYPENITQIVHTAAAQKQ 369 (462)
T ss_dssp CCCSCSEEEEEEETTTCSCHHH-HHHHHHH-----TTSCEEEEEECTTSSCGGGST----TCCCCTTCCCEEEEBTTTTB
T ss_pred hhhcCCEEEEEeccCCCCCHHH-HHHHHhc-----cCCcEEEEEECCCCCcchhhH----HHHHhccCCcEEEEECCCCC
Confidence 5788999999999998776554 4444443 236999999999997653221 11111245689999999999
Q ss_pred CHHHHHHHHHHHHHHh
Q psy549 198 NIVQVFKELLAQAKVQ 213 (253)
Q Consensus 198 ~i~~l~~~l~~~~~~~ 213 (253)
|+++++++|.+.+...
T Consensus 370 Gi~eL~~~i~~~~~~~ 385 (462)
T 3geh_A 370 GIDSLETAILEIVQTG 385 (462)
T ss_dssp SHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHhcc
Confidence 9999999999988543
No 137
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.84 E-value=1.1e-19 Score=153.92 Aligned_cols=161 Identities=16% Similarity=0.091 Sum_probs=110.5
Q ss_pred cce-EEEECCCCCCHHHHHHHHHhCCC-CCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCC---------ChhhHHH
Q psy549 49 KRR-VVVMGGARVGKSSIISQFLYDRF-ISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQ---------FPAMREL 117 (253)
Q Consensus 49 ~~~-I~iiG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~---------~~~~~~~ 117 (253)
.++ |+|+|.+|||||||+|+|.+... ..+...++.+.....+.+ ++ ..+.+|||+|... |... ..
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~-~g--~~v~l~DT~G~i~~lp~~lve~f~~t-l~ 253 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPI-NN--RKIMLVDTVGFIRGIPPQIVDAFFVT-LS 253 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEE-TT--EEEEEEECCCBCSSCCGGGHHHHHHH-HH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEE-CC--EEEEEEeCCCchhcCCHHHHHHHHHH-HH
Confidence 455 99999999999999999998765 455667777788888888 55 4678999999632 1222 22
Q ss_pred hcccCCEEEEEEECCChh--hHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCcccc--HHHHHHHHHhc--CCCcEEEe
Q psy549 118 SISTADAFVLVYAVDDAS--TWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVR--REIAETIALYD--WQCGFVEC 191 (253)
Q Consensus 118 ~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~--~~~~~~~~ 191 (253)
.+..+|++++|+|++++. .+..+..|...+......++|+++|+||+|+...... ...+..+.... ...+++++
T Consensus 254 ~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 333 (364)
T 2qtf_A 254 EAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPI 333 (364)
T ss_dssp GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEEC
T ss_pred HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 478899999999999876 5555555665555544467899999999998754311 11222232312 23468999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHh
Q psy549 192 SAKENYNIVQVFKELLAQAKVQ 213 (253)
Q Consensus 192 Sa~~~~~i~~l~~~l~~~~~~~ 213 (253)
||+++.|+++++++|.+.+...
T Consensus 334 SA~~g~gi~~L~~~I~~~l~~~ 355 (364)
T 2qtf_A 334 SALKRTNLELLRDKIYQLATQL 355 (364)
T ss_dssp BTTTTBSHHHHHHHHHHHHHHH
T ss_pred ECCCCcCHHHHHHHHHHHhccc
Confidence 9999999999999999877553
No 138
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.83 E-value=3.3e-21 Score=167.56 Aligned_cols=151 Identities=16% Similarity=0.149 Sum_probs=100.5
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCCC--CCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCC--------CChhhHHHhc
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDRF--ISRYKETVEELHRGEYELPDGAQLTLDILDTSGAY--------QFPAMRELSI 119 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~--------~~~~~~~~~~ 119 (253)
++|+|+|.+|||||||+|+|++..+ +.+.++++.+.....+.+ ++ ..+.+|||||.+ .+...+..++
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~-~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 80 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEW-LN--YDFNLIDTGGIDIGDEPFLAQIRQQAEIAM 80 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTT-CS--SCCEEEC---------CHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEE-CC--ceEEEEECCCCCCcchhHHHHHHHHHHHHH
Confidence 6899999999999999999998765 456667777777777666 44 368999999986 4566667789
Q ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHHhcCCCcEEEeccCCCCCH
Q psy549 120 STADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIALYDWQCGFVECSAKENYNI 199 (253)
Q Consensus 120 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 199 (253)
+.+|++|+|+|+.++.++.+ .++..+.. ..++|+++|+||+|+..... ....+.. ....+++++||++|.|+
T Consensus 81 ~~ad~il~vvD~~~~~~~~d--~~~~~~l~--~~~~pvilv~NK~D~~~~~~---~~~~~~~-lg~~~~~~iSA~~g~gv 152 (436)
T 2hjg_A 81 DEADVIIFMVNGREGVTAAD--EEVAKILY--RTKKPVVLAVNKLDNTEMRA---NIYDFYS-LGFGEPYPISGTHGLGL 152 (436)
T ss_dssp HHCSEEEEEEETTTCSCHHH--HHHHHHHT--TCCSCEEEEEECCCC--------CCCSSGG-GSSCCCEECBTTTTBTH
T ss_pred HhCCEEEEEEeCCCCCCHHH--HHHHHHHH--HcCCCEEEEEECccCccchh---hHHHHHH-cCCCCeEEEeCcCCCCh
Confidence 99999999999998766544 33333332 25689999999999865311 0111222 12226899999999999
Q ss_pred HHHHHHHHHHHH
Q psy549 200 VQVFKELLAQAK 211 (253)
Q Consensus 200 ~~l~~~l~~~~~ 211 (253)
.++++++.+.+.
T Consensus 153 ~~L~~~i~~~l~ 164 (436)
T 2hjg_A 153 GDLLDAVAEHFK 164 (436)
T ss_dssp HHHHHHHHHTGG
T ss_pred HHHHHHHHHhcC
Confidence 999999998775
No 139
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.83 E-value=5.8e-20 Score=161.24 Aligned_cols=159 Identities=12% Similarity=0.154 Sum_probs=108.7
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCC----C---C-CCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHH
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDR----F---I-SRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMREL 117 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~----~---~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~ 117 (253)
....++|+++|++++|||||+++|++.. . . .....++.+.....+.+ ++ ..+.||||||+++|...+..
T Consensus 16 ~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~--~~i~iiDtPGh~~~~~~~~~ 92 (482)
T 1wb1_A 16 DFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKL-EN--YRITLVDAPGHADLIRAVVS 92 (482)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEE-TT--EEEEECCCSSHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEE-CC--EEEEEEECCChHHHHHHHHH
Confidence 3457999999999999999999999866 1 1 11122333444444555 33 57899999999999888888
Q ss_pred hcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccH---HHHHHHHHhc---CCCcEEEe
Q psy549 118 SISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRR---EIAETIALYD---WQCGFVEC 191 (253)
Q Consensus 118 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~---~~~~~~~~~~---~~~~~~~~ 191 (253)
.+..+|++|+|+|++++..-+..+. +..+.. .++|+++|+||+|+.+..... +....+.... ...+++++
T Consensus 93 ~~~~aD~~ilVvda~~g~~~qt~e~-l~~~~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~v 168 (482)
T 1wb1_A 93 AADIIDLALIVVDAKEGPKTQTGEH-MLILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPI 168 (482)
T ss_dssp HTTSCCEEEEEEETTTCSCHHHHHH-HHHHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEEC
T ss_pred HHhhCCEEEEEEecCCCccHHHHHH-HHHHHH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEE
Confidence 9999999999999998422122121 222222 458889999999997642211 2222222211 25789999
Q ss_pred ccCCCCCHHHHHHHHHHHHH
Q psy549 192 SAKENYNIVQVFKELLAQAK 211 (253)
Q Consensus 192 Sa~~~~~i~~l~~~l~~~~~ 211 (253)
||++|.|+++++++|.+.+.
T Consensus 169 SA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 169 SAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp CTTTCTTHHHHHHHHHHHHH
T ss_pred ECcCCCCHHHHHHHHHHhhc
Confidence 99999999999999999875
No 140
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.83 E-value=3.1e-20 Score=153.76 Aligned_cols=154 Identities=17% Similarity=0.128 Sum_probs=109.2
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCCC--CCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCC-CCh--------hhHH
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDRF--ISRYKETVEELHRGEYELPDGAQLTLDILDTSGAY-QFP--------AMRE 116 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~-~~~--------~~~~ 116 (253)
...+|+|+|++|||||||+|+|++..+ ....+.++.+.....+.. + ...+.+|||||.. ... ....
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~-~--~~~i~~iDTpG~~~~~~~~l~~~~~~~~~ 83 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTE-G--AYQAIYVDTPGLHMEEKRAINRLMNKAAS 83 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEE-T--TEEEEEESSSSCCHHHHHHHHHHHTCCTT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEE-C--CeeEEEEECcCCCccchhhHHHHHHHHHH
Confidence 345899999999999999999999875 344555665555555544 3 3578999999987 322 2223
Q ss_pred HhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCC-ccccHHHHHHHHHhcCCC-cEEEeccC
Q psy549 117 LSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEF-KDVRREIAETIALYDWQC-GFVECSAK 194 (253)
Q Consensus 117 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 194 (253)
.+++.+|++++|+|+++ -+ ....|+..... ..+.|+++|+||+|+.. .....+....+.. ..+. .++++||+
T Consensus 84 ~~l~~~D~vl~Vvd~~~-~~--~~~~~i~~~l~--~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~-~~~~~~~i~iSA~ 157 (301)
T 1ega_A 84 SSIGDVELVIFVVEGTR-WT--PDDEMVLNKLR--EGKAPVILAVNKVDNVQEKADLLPHLQFLAS-QMNFLDIVPISAE 157 (301)
T ss_dssp SCCCCEEEEEEEEETTC-CC--HHHHHHHHHHH--SSSSCEEEEEESTTTCCCHHHHHHHHHHHHT-TSCCSEEEECCTT
T ss_pred HHHhcCCEEEEEEeCCC-CC--HHHHHHHHHHH--hcCCCEEEEEECcccCccHHHHHHHHHHHHH-hcCcCceEEEECC
Confidence 46778999999999977 22 33334332222 24689999999999876 2333444555655 3343 78999999
Q ss_pred CCCCHHHHHHHHHHHH
Q psy549 195 ENYNIVQVFKELLAQA 210 (253)
Q Consensus 195 ~~~~i~~l~~~l~~~~ 210 (253)
++.|++++++.+...+
T Consensus 158 ~g~~v~~l~~~i~~~l 173 (301)
T 1ega_A 158 TGLNVDTIAAIVRKHL 173 (301)
T ss_dssp TTTTHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHhC
Confidence 9999999999998765
No 141
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.83 E-value=9.2e-20 Score=162.68 Aligned_cols=159 Identities=18% Similarity=0.234 Sum_probs=115.3
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhC--CCCCC-----cc---------ccceeeeeeeEEc--CCCcEEEEEEEeCCCC
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYD--RFISR-----YK---------ETVEELHRGEYEL--PDGAQLTLDILDTSGA 108 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~--~~~~~-----~~---------~t~~~~~~~~~~~--~~~~~~~~~l~D~~g~ 108 (253)
....+|+|+|+.++|||||+++|+.. .+... .. ..+.......+.+ .++..+.+.||||||+
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 34679999999999999999999862 12110 00 0011111112222 2566789999999999
Q ss_pred CCChhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHHhcCCC--
Q psy549 109 YQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIALYDWQC-- 186 (253)
Q Consensus 109 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-- 186 (253)
.+|...+...++.+|++|+|+|++++.+++....|+.... .++|+++|+||+|+.... .....+.+.. ..+.
T Consensus 84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a~-~~~v~~el~~-~lg~~~ 157 (600)
T 2ywe_A 84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSAD-VDRVKKQIEE-VLGLDP 157 (600)
T ss_dssp GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTCC-HHHHHHHHHH-TSCCCG
T ss_pred HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCccccC-HHHHHHHHHH-hhCCCc
Confidence 9999999999999999999999999988887777766543 458999999999998653 3344555655 3343
Q ss_pred -cEEEeccCCCCCHHHHHHHHHHHHH
Q psy549 187 -GFVECSAKENYNIVQVFKELLAQAK 211 (253)
Q Consensus 187 -~~~~~Sa~~~~~i~~l~~~l~~~~~ 211 (253)
+++++||++|.|+.++|+++++.+.
T Consensus 158 ~~vi~vSAktg~GI~~Lle~I~~~lp 183 (600)
T 2ywe_A 158 EEAILASAKEGIGIEEILEAIVNRIP 183 (600)
T ss_dssp GGCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred ccEEEEEeecCCCchHHHHHHHHhcc
Confidence 4899999999999999999988773
No 142
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.83 E-value=7.2e-20 Score=163.60 Aligned_cols=158 Identities=19% Similarity=0.253 Sum_probs=111.8
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCC--CCC-----Ccc---------ccceeeeeeeEEc--CCCcEEEEEEEeCCCCC
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDR--FIS-----RYK---------ETVEELHRGEYEL--PDGAQLTLDILDTSGAY 109 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~--~~~-----~~~---------~t~~~~~~~~~~~--~~~~~~~~~l~D~~g~~ 109 (253)
...+|+|+|+.++|||||+++|+... +.. ... ..+.......+.+ .++..+.+.||||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 45799999999999999999998632 111 000 0111111122222 15667899999999999
Q ss_pred CChhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHHhcCCC---
Q psy549 110 QFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIALYDWQC--- 186 (253)
Q Consensus 110 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~--- 186 (253)
+|...+...++.+|++|+|+|++++.+++....|+.... .++|+++|+||+|+.+.. .....+.+... .+.
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvViNKiDl~~a~-~~~v~~ei~~~-lg~~~~ 156 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MDLEVVPVLNKIDLPAAD-PERVAEEIEDI-VGIDAT 156 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEEEECTTSTTCC-HHHHHHHHHHH-TCCCCT
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEeeeccCccccc-HHHHHHHHHHH-hCCCcc
Confidence 999999999999999999999999887777777766543 458999999999998753 33444555542 233
Q ss_pred cEEEeccCCCCCHHHHHHHHHHHHH
Q psy549 187 GFVECSAKENYNIVQVFKELLAQAK 211 (253)
Q Consensus 187 ~~~~~Sa~~~~~i~~l~~~l~~~~~ 211 (253)
+++++||++|.|++++|+++.+.+.
T Consensus 157 ~vi~vSAktg~GI~~Ll~~I~~~lp 181 (599)
T 3cb4_D 157 DAVRCSAKTGVGVQDVLERLVRDIP 181 (599)
T ss_dssp TCEEECTTTCTTHHHHHHHHHHHSC
T ss_pred eEEEeecccCCCchhHHHHHhhcCC
Confidence 5899999999999999999998774
No 143
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.83 E-value=1e-21 Score=173.19 Aligned_cols=157 Identities=25% Similarity=0.349 Sum_probs=115.0
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCCCC-CCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEE
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDRFI-SRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFV 126 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 126 (253)
..++|+|+|++++|||||+++|.+..+. .....++.+.....+.++++. .++||||||++.|..++...+..+|++|
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~--~i~~iDTPGhe~f~~~~~~~~~~aD~vI 80 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGE--KITFLDTPGHAAFSAMRARGTQVTDIVI 80 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSS--CCBCEECSSSCCTTTSBBSSSBSBSSCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCC--EEEEEECCChHHHHHHHHHHHccCCEEE
Confidence 4579999999999999999999986652 233344445555555553343 6789999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc---cccHHHHHHHH----HhcCCCcEEEeccCCCCCH
Q psy549 127 LVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK---DVRREIAETIA----LYDWQCGFVECSAKENYNI 199 (253)
Q Consensus 127 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~---~~~~~~~~~~~----~~~~~~~~~~~Sa~~~~~i 199 (253)
+|+|++++...+....|. .....++|+++|+||+|+.+. ....+. ..+. .....++++++||++|.|+
T Consensus 81 LVVDa~dg~~~qt~e~l~----~~~~~~vPiIVViNKiDl~~~~~~~v~~~l-~~~~~~~e~~~~~~~iv~vSAktG~GI 155 (537)
T 3izy_P 81 LVVAADDGVMKQTVESIQ----HAKDAHVPIVLAINKCDKAEADPEKVKKEL-LAYDVVCEDYGGDVQAVHVSALTGENM 155 (537)
T ss_dssp EECBSSSCCCHHHHHHHH----HHHTTTCCEEECCBSGGGTTTSCCSSSSHH-HHTTSCCCCSSSSEEECCCCSSSSCSS
T ss_pred EEEECCCCccHHHHHHHH----HHHHcCCcEEEEEecccccccchHHHHHHH-HhhhhhHHhcCCCceEEEEECCCCCCc
Confidence 999999976655443332 222356899999999999754 122211 1111 1112458999999999999
Q ss_pred HHHHHHHHHHHH
Q psy549 200 VQVFKELLAQAK 211 (253)
Q Consensus 200 ~~l~~~l~~~~~ 211 (253)
+++|++|...+.
T Consensus 156 ~eLle~I~~l~~ 167 (537)
T 3izy_P 156 MALAEATIALAE 167 (537)
T ss_dssp HHHHHHHHHHHT
T ss_pred hhHHHHHHHhhh
Confidence 999999988764
No 144
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.82 E-value=5.3e-20 Score=142.40 Aligned_cols=128 Identities=13% Similarity=0.155 Sum_probs=92.8
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhccc----C
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST----A 122 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~----~ 122 (253)
...++|+|+|++|||||||+++|.+..+........ ..... +...+.+.+||+||++.+...+..++.. +
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~-----~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 119 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQE-----PLSAA-DYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFV 119 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGGGE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCC-----Cceee-eecCCeEEEEECCCCchHHHHHHHHHHhhcccC
Confidence 467899999999999999999999987643111100 00111 1123467899999999998777777665 8
Q ss_pred CEEEEEEECC-ChhhHHHHHHHHHHHHHh----cCCCCCEEEEEecCCCCCccccHHHHHHHH
Q psy549 123 DAFVLVYAVD-DASTWDVVKDLREQIVNK----RGLMVPIVVVGNKCELEFKDVRREIAETIA 180 (253)
Q Consensus 123 d~~i~v~d~~-~~~s~~~~~~~~~~~~~~----~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 180 (253)
|++|+|+|++ +..++..+..|+..+... ...++|+++|+||+|+.......+..+.+.
T Consensus 120 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~ 182 (193)
T 2ged_A 120 KGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALE 182 (193)
T ss_dssp EEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHH
T ss_pred CEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHHH
Confidence 9999999999 899998888888777653 335799999999999987644444444443
No 145
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.82 E-value=8e-20 Score=148.30 Aligned_cols=163 Identities=13% Similarity=0.166 Sum_probs=104.6
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCC-CCCCccc--cceeeeeeeEEcCCCcEEEEEEEeCCCCCCChh---------
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDR-FISRYKE--TVEELHRGEYELPDGAQLTLDILDTSGAYQFPA--------- 113 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~-~~~~~~~--t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------- 113 (253)
....++|+|+|++|||||||+++|++.. +...+.+ ++.......+.. ++ ..+.||||||...+..
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~--~~i~iiDTpG~~~~~~~~~~~~~~i 95 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW-GN--REIVIIDTPDMFSWKDHCEALYKEV 95 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEE-TT--EEEEEEECCGGGGSSCCCHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEe-CC--CEEEEEECcCCCCCCCCHHHHHHHH
Confidence 4567999999999999999999999877 4433322 445555556666 44 4689999999766421
Q ss_pred --hHHHhcccCCEEEEEEECCChhhH-HHHHHHHHHHHHhcCCCCCEEEEEe-cCCCCCccccH-------HHHHHHHHh
Q psy549 114 --MRELSISTADAFVLVYAVDDASTW-DVVKDLREQIVNKRGLMVPIVVVGN-KCELEFKDVRR-------EIAETIALY 182 (253)
Q Consensus 114 --~~~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~piilv~n-K~Dl~~~~~~~-------~~~~~~~~~ 182 (253)
.....++.+|++|+|+|++..... ..+..|+..+.... ...|+++|+| |+|+....... .....+..
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~vv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~- 173 (260)
T 2xtp_A 96 QRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGED-AMGHTIVLFTHKEDLNGGSLMDYMHDSDNKALSKLVA- 173 (260)
T ss_dssp HHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGG-GGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHH-
T ss_pred HHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCch-hhccEEEEEEcccccCCccHHHHHHhcchHHHHHHHH-
Confidence 122367889999999999862221 11222333222111 1356777776 99997543222 11222332
Q ss_pred cCCCc---E--EEeccCCCCCHHHHHHHHHHHHHHh
Q psy549 183 DWQCG---F--VECSAKENYNIVQVFKELLAQAKVQ 213 (253)
Q Consensus 183 ~~~~~---~--~~~Sa~~~~~i~~l~~~l~~~~~~~ 213 (253)
..+.. + +++||+++.|+.++|++|.+.+...
T Consensus 174 ~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~ 209 (260)
T 2xtp_A 174 ACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEK 209 (260)
T ss_dssp HTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhC
Confidence 11111 2 7899999999999999999988764
No 146
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.81 E-value=2.1e-20 Score=157.30 Aligned_cols=118 Identities=14% Similarity=0.069 Sum_probs=92.0
Q ss_pred cEEEEEEEeCCCCCCChhhHHHhcccCCEEEEEEECC----------ChhhHHHHHHHHHHHHHhc-CCCCCEEEEEecC
Q psy549 96 AQLTLDILDTSGAYQFPAMRELSISTADAFVLVYAVD----------DASTWDVVKDLREQIVNKR-GLMVPIVVVGNKC 164 (253)
Q Consensus 96 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~ 164 (253)
..+.+++|||+|+++++.++..++++++++|+|||++ +..+|.....|+..+.... ..++|+++|+||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 5688999999999999999999999999999999998 7788988888888877632 3579999999999
Q ss_pred CCCCccc----------------------cHHHHHHHHHh---------------cCCCcEEEeccCCCCCHHHHHHHHH
Q psy549 165 ELEFKDV----------------------RREIAETIALY---------------DWQCGFVECSAKENYNIVQVFKELL 207 (253)
Q Consensus 165 Dl~~~~~----------------------~~~~~~~~~~~---------------~~~~~~~~~Sa~~~~~i~~l~~~l~ 207 (253)
|+....+ ..+.+..+... ...+.+++|||+++.||.++|+++.
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 9854311 12344444221 1234568999999999999999999
Q ss_pred HHHHHh
Q psy549 208 AQAKVQ 213 (253)
Q Consensus 208 ~~~~~~ 213 (253)
+.+...
T Consensus 341 ~~I~~~ 346 (354)
T 2xtz_A 341 ETLRRR 346 (354)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988654
No 147
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.81 E-value=2.2e-19 Score=144.64 Aligned_cols=164 Identities=15% Similarity=0.148 Sum_probs=104.1
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCCCC-CCcc--ccceeeeeeeEEcCCCcEEEEEEEeCCCC--------CCChhh
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDRFI-SRYK--ETVEELHRGEYELPDGAQLTLDILDTSGA--------YQFPAM 114 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~-~~~~--~t~~~~~~~~~~~~~~~~~~~~l~D~~g~--------~~~~~~ 114 (253)
....++|+|+|.+|||||||+|+|++.... ..+. +++.......+.. ++ ..+.||||||. +++...
T Consensus 18 ~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~-~~--~~i~liDTPG~~~~~~~~~~~~~~~ 94 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRW-DK--CHVEVVDTPDIFSSQVSKTDPGCEE 94 (247)
T ss_dssp --CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEE-TT--EEEEEEECCSCSSTTHHHHSTTSHH
T ss_pred CCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEE-CC--cEEEEEECCCCCCCCCCcHHHHHHH
Confidence 356799999999999999999999997753 2222 2455555556666 44 46889999996 333333
Q ss_pred HHHhc----ccCCEEEEEEECCChhhHH-HHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccH-------HHHHHHHHh
Q psy549 115 RELSI----STADAFVLVYAVDDASTWD-VVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRR-------EIAETIALY 182 (253)
Q Consensus 115 ~~~~~----~~~d~~i~v~d~~~~~s~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~-------~~~~~~~~~ 182 (253)
....+ +.+|++|+|+|++.....+ .+..++..+......+.|+++|+||.|+.+..... ...+.+..
T Consensus 95 i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~- 173 (247)
T 3lxw_A 95 RGHCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVA- 173 (247)
T ss_dssp HHHHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHH-
T ss_pred HHHHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHH-
Confidence 33333 8999999999998532111 12223332221111257999999999997642211 22344444
Q ss_pred cCCCcEEEeccCC-----CCCHHHHHHHHHHHHHHh
Q psy549 183 DWQCGFVECSAKE-----NYNIVQVFKELLAQAKVQ 213 (253)
Q Consensus 183 ~~~~~~~~~Sa~~-----~~~i~~l~~~l~~~~~~~ 213 (253)
.++..++.++... +.++.+|++.|.+.+.+.
T Consensus 174 ~~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~ 209 (247)
T 3lxw_A 174 ECGGRVCAFDNRATGREQEAQVEQLLGMVEGLVLEH 209 (247)
T ss_dssp HTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HcCCeEEEEeCCCCccccHHHHHHHHHHHHHHHHHc
Confidence 3555666665544 579999999998888764
No 148
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.81 E-value=3.2e-19 Score=154.91 Aligned_cols=157 Identities=23% Similarity=0.271 Sum_probs=103.1
Q ss_pred CCCCcceEEEECCCCCCHHHHHHHHHhCC--CCCCc------------------------------cccceeeeeeeEEc
Q psy549 45 LQKDKRRVVVMGGARVGKSSIISQFLYDR--FISRY------------------------------KETVEELHRGEYEL 92 (253)
Q Consensus 45 ~~~~~~~I~iiG~~~~GKSsLi~~l~~~~--~~~~~------------------------------~~t~~~~~~~~~~~ 92 (253)
..+..++|+++|++++|||||+++|+... +.... ...+.+.....+..
T Consensus 13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~ 92 (439)
T 3j2k_7 13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET 92 (439)
T ss_pred CCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec
Confidence 34677999999999999999999996532 11110 12233333444444
Q ss_pred CCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEEEECCChhh---HHHHHHHHHHHHHhcCCCCC-EEEEEecCCCCC
Q psy549 93 PDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLVYAVDDAST---WDVVKDLREQIVNKRGLMVP-IVVVGNKCELEF 168 (253)
Q Consensus 93 ~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 168 (253)
+ ...+.||||||+++|...+...+..+|++|+|+|++++.. |....++...+......++| +++|+||+|+..
T Consensus 93 -~--~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~ 169 (439)
T 3j2k_7 93 -E--KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPT 169 (439)
T ss_pred -C--CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcc
Confidence 2 3578999999999999998889999999999999998642 11111111111111224567 999999999864
Q ss_pred ccc--------cHHHHHHHHHhcC----CCcEEEeccCCCCCHHHHHH
Q psy549 169 KDV--------RREIAETIALYDW----QCGFVECSAKENYNIVQVFK 204 (253)
Q Consensus 169 ~~~--------~~~~~~~~~~~~~----~~~~~~~Sa~~~~~i~~l~~ 204 (253)
... ..+....+..... .++++++||++|.|+.++++
T Consensus 170 ~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 170 VNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred cchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 211 1111222222122 46899999999999999765
No 149
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.81 E-value=9.2e-20 Score=153.51 Aligned_cols=118 Identities=16% Similarity=0.070 Sum_probs=96.2
Q ss_pred EEEEEEEeCCCCCCChhhHHHhcccCCEEEEEEECCC----------hhhHHHHHHHHHHHHHh-cCCCCCEEEEEecCC
Q psy549 97 QLTLDILDTSGAYQFPAMRELSISTADAFVLVYAVDD----------ASTWDVVKDLREQIVNK-RGLMVPIVVVGNKCE 165 (253)
Q Consensus 97 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~D 165 (253)
.+.+++||++|++.++..|..++++++++|+|||+++ ..++.....|+..+... ...++|+++|+||+|
T Consensus 192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~D 271 (353)
T 1cip_A 192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKD 271 (353)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcC
Confidence 4789999999999999999999999999999999999 45688888888877763 225699999999999
Q ss_pred CCCc----------------cccHHHHHHHHHh----------cCCCcEEEeccCCCCCHHHHHHHHHHHHHHhc
Q psy549 166 LEFK----------------DVRREIAETIALY----------DWQCGFVECSAKENYNIVQVFKELLAQAKVQY 214 (253)
Q Consensus 166 l~~~----------------~~~~~~~~~~~~~----------~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 214 (253)
+... .+..+.+..+... ...+.+++|||+++.||.++|+++.+.+...+
T Consensus 272 L~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~~ 346 (353)
T 1cip_A 272 LFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNN 346 (353)
T ss_dssp HHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHHC
T ss_pred chhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHHH
Confidence 8532 1345555555541 35678999999999999999999999987653
No 150
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.80 E-value=8.7e-19 Score=151.05 Aligned_cols=160 Identities=17% Similarity=0.141 Sum_probs=99.7
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCC---CCCCccc--cce-eeeeeeE---------Ec----CC-Cc----EEEEE
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDR---FISRYKE--TVE-ELHRGEY---------EL----PD-GA----QLTLD 101 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~---~~~~~~~--t~~-~~~~~~~---------~~----~~-~~----~~~~~ 101 (253)
.+..++|+++|+.++|||||+++|.+.. +..+... |.. .+....+ .. ++ +. ...+.
T Consensus 5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 84 (408)
T 1s0u_A 5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS 84 (408)
T ss_dssp CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence 3567999999999999999999998543 2222111 221 1111111 11 10 11 26799
Q ss_pred EEeCCCCCCChhhHHHhcccCCEEEEEEECCCh----hhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccc---cHH
Q psy549 102 ILDTSGAYQFPAMRELSISTADAFVLVYAVDDA----STWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDV---RRE 174 (253)
Q Consensus 102 l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---~~~ 174 (253)
||||||+++|...+...+..+|++|+|+|++++ ++++.+.. +... ...|+++|+||+|+.+... ..+
T Consensus 85 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~----~~~l--~~~~iivv~NK~Dl~~~~~~~~~~~ 158 (408)
T 1s0u_A 85 FVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMA----LEIL--GIDKIIIVQNKIDLVDEKQAEENYE 158 (408)
T ss_dssp EEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHH----HHHT--TCCCEEEEEECTTSSCTTTTTTHHH
T ss_pred EEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHH----HHHc--CCCeEEEEEEccCCCCHHHHHHHHH
Confidence 999999998887777778889999999999964 33333222 2221 2258999999999976532 223
Q ss_pred HHHHHHHh--cCCCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy549 175 IAETIALY--DWQCGFVECSAKENYNIVQVFKELLAQAK 211 (253)
Q Consensus 175 ~~~~~~~~--~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 211 (253)
....+... ....+++++||++|.|+++++++|.+.+.
T Consensus 159 ~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 159 QIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp HHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred HHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 33444331 13678999999999999999999987653
No 151
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.80 E-value=6.9e-19 Score=141.05 Aligned_cols=162 Identities=11% Similarity=0.102 Sum_probs=100.8
Q ss_pred CCCCcceEEEECCCCCCHHHHHHHHHhCCCCC-Ccc--ccceeeeeeeEEcCCCcEEEEEEEeCCCCCC-----------
Q psy549 45 LQKDKRRVVVMGGARVGKSSIISQFLYDRFIS-RYK--ETVEELHRGEYELPDGAQLTLDILDTSGAYQ----------- 110 (253)
Q Consensus 45 ~~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~-~~~--~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------- 110 (253)
+....++|+|+|++|||||||+|+|++..+.. ..+ .++.......+.+ ++ ..+.||||||...
T Consensus 25 ~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~--~~i~liDTpG~~~~~~~~~~~~~~ 101 (239)
T 3lxx_A 25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSW-KE--TELVVVDTPGIFDTEVPNAETSKE 101 (239)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEE-TT--EEEEEEECCSCC-----CHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEe-CC--ceEEEEECCCccCCCCCHHHHHHH
Confidence 34567999999999999999999999977633 222 3444555666666 44 4679999999553
Q ss_pred ChhhHHHhcccCCEEEEEEECCChhhH--HHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccH-------HHHHHHHH
Q psy549 111 FPAMRELSISTADAFVLVYAVDDASTW--DVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRR-------EIAETIAL 181 (253)
Q Consensus 111 ~~~~~~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~-------~~~~~~~~ 181 (253)
+.......++.+|++|+|+|++..... ..+..+...+... ...|+++|+||+|+....... +..+.+..
T Consensus 102 ~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~--~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~ 179 (239)
T 3lxx_A 102 IIRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGER--ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMD 179 (239)
T ss_dssp HHHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHH--HGGGEEEEEECGGGC------------CHHHHHHHH
T ss_pred HHHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhh--ccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHH
Confidence 233333456678999999998754332 1222222222111 235999999999986542111 23444444
Q ss_pred hcCCCcEEEeccCCC-----CCHHHHHHHHHHHHHH
Q psy549 182 YDWQCGFVECSAKEN-----YNIVQVFKELLAQAKV 212 (253)
Q Consensus 182 ~~~~~~~~~~Sa~~~-----~~i~~l~~~l~~~~~~ 212 (253)
.++..++.++...+ .++.++|..+.+.+.+
T Consensus 180 -~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 180 -IFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp -HHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HcCCEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 34556777766543 5899999988887754
No 152
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.80 E-value=5.6e-19 Score=158.00 Aligned_cols=158 Identities=19% Similarity=0.204 Sum_probs=106.1
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCCCCCCcc-ccceeeeeeeEEcC---------------CCcEEEEEEEeCCCCCCC
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDRFISRYK-ETVEELHRGEYELP---------------DGAQLTLDILDTSGAYQF 111 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~-~t~~~~~~~~~~~~---------------~~~~~~~~l~D~~g~~~~ 111 (253)
..++|+|+|++++|||||+++|++..+..... ..+.+.....+... +.....+.||||||++.|
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 45799999999999999999999765432211 11111001111100 111125899999999999
Q ss_pred hhhHHHhcccCCEEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccc--------------cH-
Q psy549 112 PAMRELSISTADAFVLVYAVDD---ASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDV--------------RR- 173 (253)
Q Consensus 112 ~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--------------~~- 173 (253)
..++...++.+|++|+|+|+++ ++++..+.. +.. .++|+++|+||+|+..... ..
T Consensus 84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~---~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~ 156 (594)
T 1g7s_A 84 TTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQ 156 (594)
T ss_dssp TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHH
T ss_pred HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH---cCCeEEEEecccccccccccccCCchHHHHHHhHHH
Confidence 9988888899999999999999 555544332 222 5689999999999864210 01
Q ss_pred ----------HHHHHHHHh-------------cCCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy549 174 ----------EIAETIALY-------------DWQCGFVECSAKENYNIVQVFKELLAQAKV 212 (253)
Q Consensus 174 ----------~~~~~~~~~-------------~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 212 (253)
+....+... ...++++++||++|.|+.+++++|...+..
T Consensus 157 v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~ 218 (594)
T 1g7s_A 157 VQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ 218 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccc
Confidence 112222221 123489999999999999999999988754
No 153
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.79 E-value=2.3e-19 Score=158.63 Aligned_cols=115 Identities=15% Similarity=0.189 Sum_probs=83.4
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCCC-----------------CCC------ccccceeeeeeeEEcCCCcEEEEEEEe
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDRF-----------------ISR------YKETVEELHRGEYELPDGAQLTLDILD 104 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~~-----------------~~~------~~~t~~~~~~~~~~~~~~~~~~~~l~D 104 (253)
...+|+|+|++|+|||||+++|+...- ..+ ....+.......+.+ ..+.+.|||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~---~~~~i~liD 88 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPY---KDYLINLLD 88 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEE---TTEEEEEEC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEe---CCEEEEEEE
Confidence 467999999999999999999972110 000 011111222223333 346789999
Q ss_pred CCCCCCChhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc
Q psy549 105 TSGAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK 169 (253)
Q Consensus 105 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 169 (253)
|||+.+|...+..+++.+|++|+|+|++++........|.. +.. .++|+++|+||+|+...
T Consensus 89 TPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~-~~~---~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 89 TPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEV-CRL---RHTPIMTFINKMDRDTR 149 (528)
T ss_dssp CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHH-HHT---TTCCEEEEEECTTSCCS
T ss_pred CCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHH-HHH---cCCCEEEEEeCCCCccc
Confidence 99999999999999999999999999999877666554432 222 46899999999999754
No 154
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.79 E-value=1.6e-18 Score=149.46 Aligned_cols=160 Identities=16% Similarity=0.138 Sum_probs=105.8
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCC---CCCCccc--cce-eeeeeeE---------Ec----CC-Cc----EEEEE
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDR---FISRYKE--TVE-ELHRGEY---------EL----PD-GA----QLTLD 101 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~---~~~~~~~--t~~-~~~~~~~---------~~----~~-~~----~~~~~ 101 (253)
....++|+++|+.++|||||+++|++.. +..+... |.. .+....+ .. ++ +. ...+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 86 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 86 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence 3567899999999999999999998543 2222111 221 1111111 10 00 11 26799
Q ss_pred EEeCCCCCCChhhHHHhcccCCEEEEEEECCCh----hhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCcccc---HH
Q psy549 102 ILDTSGAYQFPAMRELSISTADAFVLVYAVDDA----STWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVR---RE 174 (253)
Q Consensus 102 l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~ 174 (253)
||||||+++|.......+..+|++|+|+|++++ ++++.+.. +... ...|+++|+||+|+.+.... .+
T Consensus 87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~----~~~~--~~~~iivviNK~Dl~~~~~~~~~~~ 160 (410)
T 1kk1_A 87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMA----LQII--GQKNIIIAQNKIELVDKEKALENYR 160 (410)
T ss_dssp EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHH----HHHH--TCCCEEEEEECGGGSCHHHHHHHHH
T ss_pred EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHH----HHHc--CCCcEEEEEECccCCCHHHHHHHHH
Confidence 999999999887777778889999999999964 33333222 2222 22589999999999765321 22
Q ss_pred HHHHHHHh--cCCCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy549 175 IAETIALY--DWQCGFVECSAKENYNIVQVFKELLAQAK 211 (253)
Q Consensus 175 ~~~~~~~~--~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 211 (253)
....+... ....+++++||++|.|+++++++|.+.+.
T Consensus 161 ~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 161 QIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp HHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 22233321 14678999999999999999999987663
No 155
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.79 E-value=3.8e-19 Score=145.46 Aligned_cols=158 Identities=18% Similarity=0.229 Sum_probs=88.4
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCCC-CCCc-------cccce-eeeeeeEEcCCCcEEEEEEEeCCCCC-------C
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDRF-ISRY-------KETVE-ELHRGEYELPDGAQLTLDILDTSGAY-------Q 110 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~~-~~~~-------~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~-------~ 110 (253)
...++|+++|.+|+|||||+|+|++... ...+ ..|.. +.....+.. ++..+.+.+|||||.. .
T Consensus 6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~liDTpG~~d~~~~~~~ 84 (274)
T 3t5d_A 6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKE-GGVQLLLTIVDTPGFGDAVDNSNC 84 (274)
T ss_dssp -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC---CCEEEEEEECCCCSCCSCCTTT
T ss_pred ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEec-CCeEEEEEEEECCCccccccchhh
Confidence 3468999999999999999999887553 3333 22222 344444444 5666799999999973 2
Q ss_pred ChhhH-------HHhccc-------------CCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCcc
Q psy549 111 FPAMR-------ELSIST-------------ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKD 170 (253)
Q Consensus 111 ~~~~~-------~~~~~~-------------~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 170 (253)
+..+. ..++.. +|+++++++.+.......-..++..+.. ++|+++|+||+|+....
T Consensus 85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~~ 160 (274)
T 3t5d_A 85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----KVNIIPLIAKADTLTPE 160 (274)
T ss_dssp THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT----TSCEEEEESSGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc----cCCEEEEEeccCCCCHH
Confidence 33333 333332 7789998877652211111223333322 68999999999987542
Q ss_pred ccHH----HHHHHHHhcCCCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy549 171 VRRE----IAETIALYDWQCGFVECSAKENYNIVQVFKELLAQAK 211 (253)
Q Consensus 171 ~~~~----~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 211 (253)
.... +.+.+. ..+++++++|+.++.|+.+++++|.+.+.
T Consensus 161 e~~~~~~~i~~~l~--~~~i~v~~~sa~~~~~~~~l~~~l~~~~p 203 (274)
T 3t5d_A 161 ECQQFKKQIMKEIQ--EHKIKIYEFPETDDEEENKLVKKIKDRLP 203 (274)
T ss_dssp HHHHHHHHHHHHHH--HTTCCCCCC-----------CHHHHHTCS
T ss_pred HHHHHHHHHHHHHH--HcCCeEEcCCCCCChhHHHHHHHHhcCCC
Confidence 2222 222222 45778899999999999999999887653
No 156
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.79 E-value=2.1e-18 Score=146.46 Aligned_cols=147 Identities=9% Similarity=0.009 Sum_probs=104.4
Q ss_pred eEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEEEE
Q psy549 51 RVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLVYA 130 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 130 (253)
+|+++|++++|||||+++|+. ...+.+.....+.. + ...+.||||||+++|.......+..+|++|+|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~-------~giTi~~~~~~~~~-~--~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGK-------KGTSSDITMYNNDK-E--GRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSE-------EEEESSSEEEEECS-S--SSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHh-------CCEEEEeeEEEEec-C--CeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence 999999999999999999981 12222333333434 2 2468999999999998888888899999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCCCE-EEEEe-cCCCCCccccH---HHHHHHHHhc--CCCcEEE--eccCC---CCC
Q psy549 131 VDDASTWDVVKDLREQIVNKRGLMVPI-VVVGN-KCELEFKDVRR---EIAETIALYD--WQCGFVE--CSAKE---NYN 198 (253)
Q Consensus 131 ~~~~~s~~~~~~~~~~~~~~~~~~~pi-ilv~n-K~Dl~~~~~~~---~~~~~~~~~~--~~~~~~~--~Sa~~---~~~ 198 (253)
++. .+.....++..+.. .++|. ++|+| |+|+ +..... +..+.+.... ..+++++ +||++ +.|
T Consensus 93 -~~g-~~~qt~e~~~~~~~---~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~g 166 (370)
T 2elf_A 93 -PQG-LDAHTGECIIALDL---LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEG 166 (370)
T ss_dssp -TTC-CCHHHHHHHHHHHH---TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTT
T ss_pred -CCC-CcHHHHHHHHHHHH---cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCC
Confidence 543 33344555554443 34777 88999 9999 542222 2222222211 2478999 99999 999
Q ss_pred HHHHHHHHHHHHHHh
Q psy549 199 IVQVFKELLAQAKVQ 213 (253)
Q Consensus 199 i~~l~~~l~~~~~~~ 213 (253)
++++++.|.+.+...
T Consensus 167 i~~L~~~l~~~~~~~ 181 (370)
T 2elf_A 167 VDELKARINEVAEKI 181 (370)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccc
Confidence 999999999887543
No 157
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.79 E-value=5.8e-19 Score=155.23 Aligned_cols=151 Identities=15% Similarity=0.166 Sum_probs=96.8
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCC--CCCC------------------------------ccccceeeeeeeEEcCC
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDR--FISR------------------------------YKETVEELHRGEYELPD 94 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~--~~~~------------------------------~~~t~~~~~~~~~~~~~ 94 (253)
+..++|+++|++++|||||+++|++.. +... ....+.+.....+..
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-- 108 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST-- 108 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEEC--
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEec--
Confidence 567999999999999999999998652 1110 011122222223333
Q ss_pred CcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEEEECCChhhHHH-----HHHHHHHHHHhcCCCCCEEEEEecCCCCCc
Q psy549 95 GAQLTLDILDTSGAYQFPAMRELSISTADAFVLVYAVDDASTWDV-----VKDLREQIVNKRGLMVPIVVVGNKCELEFK 169 (253)
Q Consensus 95 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~-----~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 169 (253)
..+.+.||||||+++|...+...+..+|++|+|+|++++.++.. ...+...+.... ...|+++|+||+|+.+.
T Consensus 109 -~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~-~~~~iIvviNK~Dl~~~ 186 (483)
T 3p26_A 109 -HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL-GIHNLIIAMNKMDNVDW 186 (483)
T ss_dssp -SSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT-TCCCEEEEEECGGGGTT
T ss_pred -CCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc-CCCcEEEEEECcCcccc
Confidence 34578999999999999999999999999999999998754322 111121222211 22579999999999763
Q ss_pred --cccH----HHHHHHHHhcC---CCcEEEeccCCCCCHHH
Q psy549 170 --DVRR----EIAETIALYDW---QCGFVECSAKENYNIVQ 201 (253)
Q Consensus 170 --~~~~----~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~ 201 (253)
...+ +....+..... .++++++||++|.|+.+
T Consensus 187 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 187 SQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred hHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 1111 11222222222 56899999999999875
No 158
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.78 E-value=1.7e-18 Score=149.20 Aligned_cols=146 Identities=16% Similarity=0.182 Sum_probs=98.6
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhC--------CCCCC----------ccccceeeeeeeEEcCCCcEEEEEEEeCCC
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYD--------RFISR----------YKETVEELHRGEYELPDGAQLTLDILDTSG 107 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~--------~~~~~----------~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g 107 (253)
....++|+++|++++|||||+++|++. .+... ....+.+. ....+ +.....+.||||||
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~--~~~~~-~~~~~~~~iiDtpG 84 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINT--AHVEY-ETAKRHYSHVDCPG 84 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSC--EEEEE-ECSSCEEEEEECCC
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEe--eeeEe-ccCCeEEEEEECCC
Confidence 456799999999999999999999973 21110 01111122 22233 22335789999999
Q ss_pred CCCChhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCC-EEEEEecCCCCCc-ccc---HHHHHHH-HH
Q psy549 108 AYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVP-IVVVGNKCELEFK-DVR---REIAETI-AL 181 (253)
Q Consensus 108 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~-~~~---~~~~~~~-~~ 181 (253)
+++|...+...+..+|++|+|+|++++...+. ..|+..+.. .++| +++|+||+|+... ... .+....+ ..
T Consensus 85 ~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt-~~~l~~~~~---~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~ 160 (405)
T 2c78_A 85 HADYIKNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQ---VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQ 160 (405)
T ss_dssp SGGGHHHHHHHHTTCSSEEEEEETTTCCCHHH-HHHHHHHHH---TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCEEEEEEECCCCCcHHH-HHHHHHHHH---cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHH
Confidence 99999888889999999999999998765433 445544443 3578 8999999999753 111 1122233 32
Q ss_pred hcC---CCcEEEeccCCCCC
Q psy549 182 YDW---QCGFVECSAKENYN 198 (253)
Q Consensus 182 ~~~---~~~~~~~Sa~~~~~ 198 (253)
... ..+++++||++|.|
T Consensus 161 ~~~~~~~~~~i~~SA~~g~~ 180 (405)
T 2c78_A 161 YEFPGDEVPVIRGSALLALE 180 (405)
T ss_dssp TTSCTTTSCEEECCHHHHHH
T ss_pred hcccccCCCEEEccHHHhhh
Confidence 222 37899999999987
No 159
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.78 E-value=9.7e-19 Score=150.23 Aligned_cols=156 Identities=14% Similarity=0.113 Sum_probs=104.6
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCC-------CCCC----------ccccceeeeeeeEEcCCCcEEEEEEEeCCCCCC
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDR-------FISR----------YKETVEELHRGEYELPDGAQLTLDILDTSGAYQ 110 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~-------~~~~----------~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~ 110 (253)
+.++|+++|++++|||||+++|++.. +... ....+.+. ....+ +.....+.||||||+++
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~--~~~~~-~~~~~~~~iiDtpG~~~ 78 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINA--AHVEY-STAARHYAHTDCPGHAD 78 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEEC--EEEEE-ECSSCEEEEEECSSHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEe--eeEEe-ccCCeEEEEEECCChHH
Confidence 46899999999999999999999731 1100 00111111 11223 22335789999999999
Q ss_pred ChhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCC-EEEEEecCCCCCc-cc---cHHHHHHHHH-hcC
Q psy549 111 FPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVP-IVVVGNKCELEFK-DV---RREIAETIAL-YDW 184 (253)
Q Consensus 111 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~-~~---~~~~~~~~~~-~~~ 184 (253)
|...+...+..+|++|+|+|+++....+....| ..+.. .++| +++|+||+|+.+. .. ..+....+.. ...
T Consensus 79 f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~---~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 154 (397)
T 1d2e_A 79 YVKNMITGTAPLDGCILVVAANDGPMPQTREHL-LLARQ---IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGY 154 (397)
T ss_dssp HHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHH---TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHHH---cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCC
Confidence 988888889999999999999986554443333 33332 4578 7899999999753 11 1122233333 222
Q ss_pred ---CCcEEEeccCCCCC----------HHHHHHHHHHHH
Q psy549 185 ---QCGFVECSAKENYN----------IVQVFKELLAQA 210 (253)
Q Consensus 185 ---~~~~~~~Sa~~~~~----------i~~l~~~l~~~~ 210 (253)
.++++++||++|.| +.++++.|.+.+
T Consensus 155 ~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~ 193 (397)
T 1d2e_A 155 KGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI 193 (397)
T ss_dssp CTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred CcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhC
Confidence 36899999999764 788888877655
No 160
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.78 E-value=1.8e-19 Score=157.55 Aligned_cols=154 Identities=17% Similarity=0.207 Sum_probs=100.2
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCCC--CCCccccceeeeeeeEEcCCCcEEEEEEEeCCC--------CCCChhhHH
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDRF--ISRYKETVEELHRGEYELPDGAQLTLDILDTSG--------AYQFPAMRE 116 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g--------~~~~~~~~~ 116 (253)
....+|+|+|.+|||||||+|+|++..+ +.+.+.++.+.....+.. ++ ..+.+||||| ++++.....
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~-~~--~~~~liDT~G~~~~~~~~~~~~~~~~~ 97 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEW-LN--YDFNLIDTGGIDIGDEPFLAQIRQQAE 97 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTT-CS--SCCEEECCCC------CCHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEE-CC--ceEEEEECCCCCCcchHHHHHHHHHHH
Confidence 4467999999999999999999998764 445556666666655555 33 4789999999 555666777
Q ss_pred HhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHHhcCCCcEEEeccCCC
Q psy549 117 LSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIALYDWQCGFVECSAKEN 196 (253)
Q Consensus 117 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 196 (253)
.+++.+|++|+|+|..+..... ..|+..+.. ..++|+++|+||+|+.... .... .+..... ..++++||++|
T Consensus 98 ~~~~~ad~il~VvD~~~~~~~~--d~~l~~~l~--~~~~pvilV~NK~D~~~~~--~~~~-e~~~lg~-~~~~~iSA~~g 169 (456)
T 4dcu_A 98 IAMDEADVIIFMVNGREGVTAA--DEEVAKILY--RTKKPVVLAVNKLDNTEMR--ANIY-DFYSLGF-GEPYPISGTHG 169 (456)
T ss_dssp HHHHHCSEEEEEEESSSCSCHH--HHHHHHHHT--TCCSCEEEEEECC-----------C-CSGGGSS-SSEEECCTTTC
T ss_pred hhHhhCCEEEEEEeCCCCCChH--HHHHHHHHH--HcCCCEEEEEECccchhhh--hhHH-HHHHcCC-CceEEeecccc
Confidence 7899999999999988754432 334333333 2578999999999976431 1111 1222122 24679999999
Q ss_pred CCHHHHHHHHHHHHH
Q psy549 197 YNIVQVFKELLAQAK 211 (253)
Q Consensus 197 ~~i~~l~~~l~~~~~ 211 (253)
.|+.++++++.+.+.
T Consensus 170 ~gv~~L~~~i~~~l~ 184 (456)
T 4dcu_A 170 LGLGDLLDAVAEHFK 184 (456)
T ss_dssp TTHHHHHHHHHTTGG
T ss_pred cchHHHHHHHHhhcc
Confidence 999999999987664
No 161
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.77 E-value=6.5e-19 Score=145.64 Aligned_cols=163 Identities=20% Similarity=0.195 Sum_probs=101.8
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCCCCCC-------ccc----------------------cceeeee---------
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDRFISR-------YKE----------------------TVEELHR--------- 87 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~-------~~~----------------------t~~~~~~--------- 87 (253)
....++|+|+|.+|||||||+|+|++..+... .+. ++.+...
T Consensus 23 ~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~ 102 (299)
T 2aka_B 23 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 102 (299)
T ss_dssp TCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHH
Confidence 34568999999999999999999999876311 111 1111000
Q ss_pred ------------eeEEcCCCcEEEEEEEeCCCCC-------------CChhhHHHhcccCCEEE-EEEECCChhhHHHHH
Q psy549 88 ------------GEYELPDGAQLTLDILDTSGAY-------------QFPAMRELSISTADAFV-LVYAVDDASTWDVVK 141 (253)
Q Consensus 88 ------------~~~~~~~~~~~~~~l~D~~g~~-------------~~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~ 141 (253)
..+.+.......+.||||||.. .+..+...+++.++.++ +|+|+++........
T Consensus 103 i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~ 182 (299)
T 2aka_B 103 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 182 (299)
T ss_dssp HCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH
T ss_pred hcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHH
Confidence 0000000012478999999964 23455566788888776 799998765443333
Q ss_pred HHHHHHHHhcCCCCCEEEEEecCCCCCccc-cHHHHHHH-HHhc-CCCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy549 142 DLREQIVNKRGLMVPIVVVGNKCELEFKDV-RREIAETI-ALYD-WQCGFVECSAKENYNIVQVFKELLAQAK 211 (253)
Q Consensus 142 ~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~-~~~~-~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 211 (253)
.+...+ ...+.|+++|+||+|+.+... ..+..+.. .... ...+++++||++|.|++++|+++.+...
T Consensus 183 ~~~~~~---~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~~ 252 (299)
T 2aka_B 183 KIAKEV---DPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERK 252 (299)
T ss_dssp HHHHHH---CTTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHHH
T ss_pred HHHHHh---CCCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHHH
Confidence 343333 235689999999999876522 22222210 0000 1246788999999999999999987543
No 162
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.77 E-value=3.1e-19 Score=148.25 Aligned_cols=118 Identities=14% Similarity=0.070 Sum_probs=93.2
Q ss_pred EEEEEEEeCCCCCCChhhHHHhcccCCEEEEEEECC----------ChhhHHHHHHHHHHHHHhc-CCCCCEEEEEecCC
Q psy549 97 QLTLDILDTSGAYQFPAMRELSISTADAFVLVYAVD----------DASTWDVVKDLREQIVNKR-GLMVPIVVVGNKCE 165 (253)
Q Consensus 97 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~D 165 (253)
.+.+++||++|+++++..|..++++++++|+|+|++ +..++.....|+..+.... ..++|+++++||+|
T Consensus 166 ~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~D 245 (327)
T 3ohm_A 166 SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKD 245 (327)
T ss_dssp TEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHH
T ss_pred ceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECch
Confidence 478999999999999999999999999999999665 5566777677777766532 25699999999999
Q ss_pred CCCcc-----------------ccHHHHHHHHH---------hcCCCcEEEeccCCCCCHHHHHHHHHHHHHHhc
Q psy549 166 LEFKD-----------------VRREIAETIAL---------YDWQCGFVECSAKENYNIVQVFKELLAQAKVQY 214 (253)
Q Consensus 166 l~~~~-----------------~~~~~~~~~~~---------~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 214 (253)
+.... ...+.+..+.. ....+.+++|||+++.||.++|..+.+.+...+
T Consensus 246 L~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~~ 320 (327)
T 3ohm_A 246 LLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN 320 (327)
T ss_dssp HHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHHHh
Confidence 86432 34555555521 134567899999999999999999999997653
No 163
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.77 E-value=6.4e-19 Score=148.84 Aligned_cols=117 Identities=14% Similarity=0.067 Sum_probs=87.7
Q ss_pred EEEEEEEeCCCCCCChhhHHHhcccCCEEEEEEECCC----------hhhHHHHHHHHHHHHHh-cCCCCCEEEEEecCC
Q psy549 97 QLTLDILDTSGAYQFPAMRELSISTADAFVLVYAVDD----------ASTWDVVKDLREQIVNK-RGLMVPIVVVGNKCE 165 (253)
Q Consensus 97 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~D 165 (253)
.+.+++|||+|++.++..|..++++++++|+|+|+++ ..++.....|+..+... ...++|+++|+||+|
T Consensus 200 ~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~D 279 (362)
T 1zcb_A 200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTD 279 (362)
T ss_dssp TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChh
Confidence 3689999999999999999999999999999999999 67888888888887763 235799999999999
Q ss_pred CCCc-----------------cccHHHHHHHH-----H--h---cCCCcEEEeccCCCCCHHHHHHHHHHHHHHh
Q psy549 166 LEFK-----------------DVRREIAETIA-----L--Y---DWQCGFVECSAKENYNIVQVFKELLAQAKVQ 213 (253)
Q Consensus 166 l~~~-----------------~~~~~~~~~~~-----~--~---~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 213 (253)
+... .+..+.+..+. . . ...+.+++|||+++.||.++|+++.+.+...
T Consensus 280 L~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~~ 354 (362)
T 1zcb_A 280 LLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHD 354 (362)
T ss_dssp HHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHHH
Confidence 8632 14445555443 1 0 2357789999999999999999999988654
No 164
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.77 E-value=2.9e-19 Score=155.19 Aligned_cols=154 Identities=19% Similarity=0.214 Sum_probs=100.2
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhC--CCCCCc------------------------------cccceeeeeeeEEcCC
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYD--RFISRY------------------------------KETVEELHRGEYELPD 94 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~--~~~~~~------------------------------~~t~~~~~~~~~~~~~ 94 (253)
+..++|+++|++++|||||+++|+.. .+.... ..++.+.....+..
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~-- 81 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFET-- 81 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEEC--
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEec--
Confidence 45689999999999999999999874 232110 11222222223333
Q ss_pred CcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHH----hcCCC-CCEEEEEecCCCCCc
Q psy549 95 GAQLTLDILDTSGAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVN----KRGLM-VPIVVVGNKCELEFK 169 (253)
Q Consensus 95 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~----~~~~~-~piilv~nK~Dl~~~ 169 (253)
..+.+.||||||+++|...+...+..+|++|+|+|+++ .+|+....|...... ....+ .|+++|+||+|+.+.
T Consensus 82 -~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~ 159 (435)
T 1jny_A 82 -KKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEP 159 (435)
T ss_dssp -SSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSS
T ss_pred -CCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCc
Confidence 33578999999999999999999999999999999998 566643322111111 11123 368999999999762
Q ss_pred c-------ccHHHHHHHHHhcC----CCcEEEeccCCCCCHHHHHH
Q psy549 170 D-------VRREIAETIALYDW----QCGFVECSAKENYNIVQVFK 204 (253)
Q Consensus 170 ~-------~~~~~~~~~~~~~~----~~~~~~~Sa~~~~~i~~l~~ 204 (253)
. ...+....+..... .++++++||++|.|+.++++
T Consensus 160 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 160 PYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred cccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 1 11222333333222 37899999999999986654
No 165
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.77 E-value=4e-19 Score=150.59 Aligned_cols=160 Identities=20% Similarity=0.196 Sum_probs=85.7
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCC-CCCCcc--------ccce-eeeeeeEEcCCCcEEEEEEEeCCCC-------CC
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDR-FISRYK--------ETVE-ELHRGEYELPDGAQLTLDILDTSGA-------YQ 110 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~-~~~~~~--------~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~-------~~ 110 (253)
..++|+|+|++|+|||||+++|++.. +...+. .|.. ......+.. ++..+.+++|||||. +.
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~-~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEE-RGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC-----CEEEEEEEEC-------------
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeec-CCcccceEEEEeccccccCccHHH
Confidence 45899999999999999999987654 332221 1221 222233333 555678999999998 66
Q ss_pred ChhhHH-------HhcccCCEE-----------EEEEECCC-hhhHHHHHH-HHHHHHHhcCCCCCEEEEEecCCCCCcc
Q psy549 111 FPAMRE-------LSISTADAF-----------VLVYAVDD-ASTWDVVKD-LREQIVNKRGLMVPIVVVGNKCELEFKD 170 (253)
Q Consensus 111 ~~~~~~-------~~~~~~d~~-----------i~v~d~~~-~~s~~~~~~-~~~~~~~~~~~~~piilv~nK~Dl~~~~ 170 (253)
+..++. .+++.++++ ++||++++ ..++..+.. |+..+ ..++|+++|+||+|+....
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l----~~~~piIlV~NK~Dl~~~~ 190 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI----HNKVNIVPVIAKADTLTLK 190 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT----CS-SCEEEEEECCSSSCHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh----ccCCCEEEEEECCCCCCHH
Confidence 666655 555544332 35555554 344444432 33322 3678999999999987652
Q ss_pred -ccH--HHHHHHHHhcCCCcEEEeccCCCCCHHHHHHHHHHHHHHhc
Q psy549 171 -VRR--EIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQAKVQY 214 (253)
Q Consensus 171 -~~~--~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 214 (253)
+.. +.+..+.. ..+++++++||+++.+ ++.|.++.+.+....
T Consensus 191 ev~~~k~~i~~~~~-~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~i 235 (361)
T 2qag_A 191 ERERLKKRILDEIE-EHNIKIYHLPDAESDE-DEDFKEQTRLLKASI 235 (361)
T ss_dssp HHHHHHHHHHHHTT-CC-CCSCCCC----------CHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHH-HCCCCEEeCCCcCCCc-chhHHHHHHHHHhcC
Confidence 222 23444444 4678999999999999 888988888886654
No 166
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.77 E-value=1.9e-18 Score=155.43 Aligned_cols=154 Identities=16% Similarity=0.261 Sum_probs=102.0
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCCC--CCC------------------------------ccccceeeeeeeEEcC
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDRF--ISR------------------------------YKETVEELHRGEYELP 93 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~~--~~~------------------------------~~~t~~~~~~~~~~~~ 93 (253)
....++|+|+|++|+|||||+++|++... ... ...++.+.....+..
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~- 242 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST- 242 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEEC-
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEec-
Confidence 46689999999999999999999997532 110 012233444444444
Q ss_pred CCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEEEECCChhh---HHHHHHHHHHHHHhcCCCC-CEEEEEecCCCCCc
Q psy549 94 DGAQLTLDILDTSGAYQFPAMRELSISTADAFVLVYAVDDAST---WDVVKDLREQIVNKRGLMV-PIVVVGNKCELEFK 169 (253)
Q Consensus 94 ~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~-piilv~nK~Dl~~~ 169 (253)
+ .+.+.||||||+++|...+...+..+|++|+|+|++++.. |....++...+......++ |+++|+||+|+.+.
T Consensus 243 ~--~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~ 320 (611)
T 3izq_1 243 H--RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDW 320 (611)
T ss_dssp S--SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTT
T ss_pred C--CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccch
Confidence 2 3578999999999999888889999999999999987531 1011122222222122344 59999999999763
Q ss_pred --c----ccHHHHHHHHHhcC---CCcEEEeccCCCCCHHHH
Q psy549 170 --D----VRREIAETIALYDW---QCGFVECSAKENYNIVQV 202 (253)
Q Consensus 170 --~----~~~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~l 202 (253)
. ...+....+..... .++++++||++|.|+.++
T Consensus 321 ~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 321 SQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred hHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 1 11222222222222 478999999999999876
No 167
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.76 E-value=1.1e-19 Score=158.94 Aligned_cols=154 Identities=25% Similarity=0.329 Sum_probs=106.1
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCCCCC-CccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEE
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDRFIS-RYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFV 126 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 126 (253)
..++|+++|++++|||||+++|.+..+.. .....+.+.....+.+ ++ ..+.||||||++.|..++...+..+|+++
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~-~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aI 79 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVET-EN--GMITFLDTPGHAAFTSMRARGAQATDIVV 79 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCT-TS--SCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEE-CC--EEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence 46899999999999999999999765432 2223333333344444 33 36789999999999998888899999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCcc---ccHHHH--HHHHH-hcCCCcEEEeccCCCCCHH
Q psy549 127 LVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKD---VRREIA--ETIAL-YDWQCGFVECSAKENYNIV 200 (253)
Q Consensus 127 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~--~~~~~-~~~~~~~~~~Sa~~~~~i~ 200 (253)
+|+|++++...+....| ..+.. .++|+++++||+|+.+.. +..+.. ..+.. ....++++++||++|.|++
T Consensus 80 LVVda~~g~~~qT~e~l-~~~~~---~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~ 155 (501)
T 1zo1_I 80 LVVAADDGVMPQTIEAI-QHAKA---AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGID 155 (501)
T ss_dssp EEEETTTBSCTTTHHHH-HHHHH---TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCT
T ss_pred EEeecccCccHHHHHHH-HHHHh---cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcc
Confidence 99999885332222222 22222 468999999999997531 111000 00111 0123789999999999999
Q ss_pred HHHHHHHH
Q psy549 201 QVFKELLA 208 (253)
Q Consensus 201 ~l~~~l~~ 208 (253)
++|+++..
T Consensus 156 eLle~I~~ 163 (501)
T 1zo1_I 156 ELLDAILL 163 (501)
T ss_dssp THHHHTTT
T ss_pred hhhhhhhh
Confidence 99999864
No 168
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.76 E-value=5.1e-19 Score=154.81 Aligned_cols=154 Identities=21% Similarity=0.220 Sum_probs=90.1
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhC--CCCC------------------------C------ccccceeeeeeeEEcCC
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYD--RFIS------------------------R------YKETVEELHRGEYELPD 94 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~--~~~~------------------------~------~~~t~~~~~~~~~~~~~ 94 (253)
+..++|+++|++++|||||+++|+.. .+.. + ....+.+.....+.+ +
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~-~ 119 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET-E 119 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC-S
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEec-C
Confidence 46789999999999999999999752 2210 0 011122222233444 3
Q ss_pred CcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEEEECCChh---hHHHHHHHHHHHHHhcCCCCC-EEEEEecCCCCCcc
Q psy549 95 GAQLTLDILDTSGAYQFPAMRELSISTADAFVLVYAVDDAS---TWDVVKDLREQIVNKRGLMVP-IVVVGNKCELEFKD 170 (253)
Q Consensus 95 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~ 170 (253)
...+.||||||+++|...+...+..+|++|+|+|++++. +|+...+|...+......++| +++|+||+|+....
T Consensus 120 --~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~ 197 (467)
T 1r5b_A 120 --HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQ 197 (467)
T ss_dssp --SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCS
T ss_pred --CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCcc
Confidence 357899999999999988888899999999999999863 333222333322222224577 99999999996521
Q ss_pred c--------cHHHHHHHHHh-cC----CCcEEEeccCCCCCHHHHH
Q psy549 171 V--------RREIAETIALY-DW----QCGFVECSAKENYNIVQVF 203 (253)
Q Consensus 171 ~--------~~~~~~~~~~~-~~----~~~~~~~Sa~~~~~i~~l~ 203 (253)
. ..+....+... .. .++++++||++|.|+.+++
T Consensus 198 ~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 198 WSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred ccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 1 11222333332 22 4679999999999998866
No 169
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.76 E-value=4.7e-19 Score=154.65 Aligned_cols=149 Identities=19% Similarity=0.200 Sum_probs=99.1
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhC--CCCCC------------------------------ccccceeeeeeeEEcCC
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYD--RFISR------------------------------YKETVEELHRGEYELPD 94 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~--~~~~~------------------------------~~~t~~~~~~~~~~~~~ 94 (253)
...++|+++|++++|||||+++|++. .+... ....+.+.....+..
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~-- 82 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET-- 82 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC--
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEec--
Confidence 45799999999999999999999864 22110 011122222223333
Q ss_pred CcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEEEECCChh---hH----HHHHHHHHHHHHhcCCCCC-EEEEEecCCC
Q psy549 95 GAQLTLDILDTSGAYQFPAMRELSISTADAFVLVYAVDDAS---TW----DVVKDLREQIVNKRGLMVP-IVVVGNKCEL 166 (253)
Q Consensus 95 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~----~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 166 (253)
....+.||||||+++|...+...+..+|++|+|+|++++. +| +... ++..+.. .++| +++|+||+|+
T Consensus 83 -~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~-~~~~~~~---~~v~~iivviNK~Dl 157 (458)
T 1f60_A 83 -PKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTRE-HALLAFT---LGVRQLIVAVNKMDS 157 (458)
T ss_dssp -SSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHH-HHHHHHH---TTCCEEEEEEECGGG
T ss_pred -CCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHH-HHHHHHH---cCCCeEEEEEEcccc
Confidence 3467999999999999999888999999999999999763 22 2222 2222222 3465 8999999999
Q ss_pred CCc--cc---cHHHHHHH-HHhcC---CCcEEEeccCCCCCHHHH
Q psy549 167 EFK--DV---RREIAETI-ALYDW---QCGFVECSAKENYNIVQV 202 (253)
Q Consensus 167 ~~~--~~---~~~~~~~~-~~~~~---~~~~~~~Sa~~~~~i~~l 202 (253)
.+. .. ..+....+ ..... .++++++||++|.|+.++
T Consensus 158 ~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 158 VKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp GTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 742 11 11222222 32222 378999999999998754
No 170
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.76 E-value=9.1e-18 Score=145.79 Aligned_cols=152 Identities=23% Similarity=0.164 Sum_probs=99.8
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCC--CCCC----------ccccceeee--------------------eeeEEcCC
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDR--FISR----------YKETVEELH--------------------RGEYELPD 94 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~--~~~~----------~~~t~~~~~--------------------~~~~~~~~ 94 (253)
...++|+++|++++|||||+++|++.. +... ...+++..+ .....+ +
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~-~ 100 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYF-S 100 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEE-E
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEe-e
Confidence 456899999999999999999998654 1111 112211100 001111 2
Q ss_pred CcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCC-CEEEEEecCCCCCcc--c
Q psy549 95 GAQLTLDILDTSGAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMV-PIVVVGNKCELEFKD--V 171 (253)
Q Consensus 95 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-piilv~nK~Dl~~~~--~ 171 (253)
.....+.||||||+++|...+...+..+|++|+|+|++++...+. ..++..+.. .++ |+++|+||+|+.+.. .
T Consensus 101 ~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt-~~~l~~~~~---~~~~~iIvviNK~Dl~~~~~~~ 176 (434)
T 1zun_B 101 TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQT-RRHSYIASL---LGIKHIVVAINKMDLNGFDERV 176 (434)
T ss_dssp CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHH-HHHHHHHHH---TTCCEEEEEEECTTTTTSCHHH
T ss_pred cCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHH---cCCCeEEEEEEcCcCCcccHHH
Confidence 234678999999999999888888999999999999998754333 333333333 234 589999999997631 1
Q ss_pred ---cHHHHHHHHHhcCC-----CcEEEeccCCCCCHHHHHH
Q psy549 172 ---RREIAETIALYDWQ-----CGFVECSAKENYNIVQVFK 204 (253)
Q Consensus 172 ---~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~l~~ 204 (253)
..+....+.. ..+ .+++++||++|.|+.++++
T Consensus 177 ~~~i~~~~~~~~~-~~g~~~~~~~~i~vSA~~g~gi~~~~~ 216 (434)
T 1zun_B 177 FESIKADYLKFAE-GIAFKPTTMAFVPMSALKGDNVVNKSE 216 (434)
T ss_dssp HHHHHHHHHHHHH-TTTCCCSEEEEEECCTTTCTTTSSCCT
T ss_pred HHHHHHHHHHHHH-HhCCCccCceEEEEeccCCCCcccccc
Confidence 1222333333 233 6899999999999988543
No 171
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.76 E-value=1.7e-18 Score=144.28 Aligned_cols=116 Identities=14% Similarity=0.055 Sum_probs=91.9
Q ss_pred EEEEEEEeCCCCCCChhhHHHhcccCCEEEEEEECC----------ChhhHHHHHHHHHHHHHhc-CCCCCEEEEEecCC
Q psy549 97 QLTLDILDTSGAYQFPAMRELSISTADAFVLVYAVD----------DASTWDVVKDLREQIVNKR-GLMVPIVVVGNKCE 165 (253)
Q Consensus 97 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~D 165 (253)
.+.+++||++|+++++..|..++++++++|+|||++ +..++.....|+..+.... ..++|+++|+||+|
T Consensus 160 ~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~D 239 (340)
T 4fid_A 160 DIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMD 239 (340)
T ss_dssp SCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHH
T ss_pred eeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECch
Confidence 467899999999999999999999999999999998 6778888788887777643 35799999999999
Q ss_pred CCCcc----------------ccHHHHHH-HHHhc-------------------------CCCcEEEeccCCCCCHHHHH
Q psy549 166 LEFKD----------------VRREIAET-IALYD-------------------------WQCGFVECSAKENYNIVQVF 203 (253)
Q Consensus 166 l~~~~----------------~~~~~~~~-~~~~~-------------------------~~~~~~~~Sa~~~~~i~~l~ 203 (253)
+.... ...+.+.. +.... ..+.+++|||++..+|..+|
T Consensus 240 L~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF 319 (340)
T 4fid_A 240 LFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVF 319 (340)
T ss_dssp HHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHHH
T ss_pred hhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHHH
Confidence 86421 12223322 22211 24678999999999999999
Q ss_pred HHHHHHHHH
Q psy549 204 KELLAQAKV 212 (253)
Q Consensus 204 ~~l~~~~~~ 212 (253)
..+.+.+..
T Consensus 320 ~~v~~~Il~ 328 (340)
T 4fid_A 320 MLAVDVIMK 328 (340)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999876
No 172
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.74 E-value=2.4e-17 Score=129.15 Aligned_cols=156 Identities=12% Similarity=0.089 Sum_probs=97.8
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCC----------hhh
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQF----------PAM 114 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~----------~~~ 114 (253)
.....+|+|+|++|||||||+++|.+..+.....++.. ......+.+ ++ .+.+||+||.... ...
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~-~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~ 98 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEV-AD---GKRLVDLPGYGYAEVPEEMKRKWQRA 98 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEE-ET---TEEEEECCCCC------CCHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEe-cC---CEEEEECcCCcccccCHHHHHHHHHH
Confidence 34568999999999999999999998764322222222 122233334 22 4679999997532 222
Q ss_pred HHHhc---ccCCEEEEEEECCChhhHHH--HHHHHHHHHHhcCCCCCEEEEEecCCCCCcc---ccHHHHHHHHHh-cCC
Q psy549 115 RELSI---STADAFVLVYAVDDASTWDV--VKDLREQIVNKRGLMVPIVVVGNKCELEFKD---VRREIAETIALY-DWQ 185 (253)
Q Consensus 115 ~~~~~---~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~-~~~ 185 (253)
...++ ..++++++|+|+.++.++.. +..|+ .. .++|+++|+||+|+.... .....+..+... ...
T Consensus 99 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~---~~---~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~ 172 (210)
T 1pui_A 99 LGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWA---VD---SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGD 172 (210)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHH---HH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSC
T ss_pred HHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHH---HH---cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCC
Confidence 23333 46899999999988755432 22222 11 458999999999987541 112333333331 224
Q ss_pred CcEEEeccCCCCCHHHHHHHHHHHHH
Q psy549 186 CGFVECSAKENYNIVQVFKELLAQAK 211 (253)
Q Consensus 186 ~~~~~~Sa~~~~~i~~l~~~l~~~~~ 211 (253)
+.++++|++++.++++++++|.+.+.
T Consensus 173 ~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 173 VQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp EEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred CceEEEeecCCCCHHHHHHHHHHHHh
Confidence 57889999999999999999988763
No 173
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.73 E-value=2.1e-17 Score=150.88 Aligned_cols=164 Identities=15% Similarity=0.218 Sum_probs=107.8
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCCC-CCCccccceee--------eeeeEEcCCCcE--------------------
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDRF-ISRYKETVEEL--------HRGEYELPDGAQ-------------------- 97 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~--------~~~~~~~~~~~~-------------------- 97 (253)
...++|+|+|.+|+|||||+|+|++..+ +....+++... ......+.++..
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~ 146 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA 146 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence 3568999999999999999999998774 22222232100 000111101100
Q ss_pred ---------------------------EEEEEEeCCCCCC---ChhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHH
Q psy549 98 ---------------------------LTLDILDTSGAYQ---FPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQI 147 (253)
Q Consensus 98 ---------------------------~~~~l~D~~g~~~---~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~ 147 (253)
..+.||||||... .......+++.+|++|+|+|++++.+......|...+
T Consensus 147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l 226 (695)
T 2j69_A 147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYI 226 (695)
T ss_dssp HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHT
T ss_pred HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHH
Confidence 2578999999654 3445556889999999999999887776665554433
Q ss_pred HHhcCCCCCEEEEEecCCCCCcc-ccH-----------HHH----HHHHHh-------cCCCcEEEeccC----------
Q psy549 148 VNKRGLMVPIVVVGNKCELEFKD-VRR-----------EIA----ETIALY-------DWQCGFVECSAK---------- 194 (253)
Q Consensus 148 ~~~~~~~~piilv~nK~Dl~~~~-~~~-----------~~~----~~~~~~-------~~~~~~~~~Sa~---------- 194 (253)
. ..+.|+++|+||+|+.... ... ... ..+... ....++++|||+
T Consensus 227 ~---~~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~ 303 (695)
T 2j69_A 227 K---GRGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNP 303 (695)
T ss_dssp T---TSCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCT
T ss_pred H---hhCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCc
Confidence 2 2357899999999986542 000 111 112211 123479999999
Q ss_pred ----CCCCHHHHHHHHHHHHHHh
Q psy549 195 ----ENYNIVQVFKELLAQAKVQ 213 (253)
Q Consensus 195 ----~~~~i~~l~~~l~~~~~~~ 213 (253)
++.|+.++++.+.+.+...
T Consensus 304 ~~~~~~~Gi~~L~~~L~~~l~~~ 326 (695)
T 2j69_A 304 QADLDGTGFPKFMDSLNTFLTRE 326 (695)
T ss_dssp TCCCTTSSHHHHHHHHHHHHHHT
T ss_pred hhhhhccCHHHHHHHHHHHHHHh
Confidence 9999999999999877543
No 174
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.73 E-value=8.1e-17 Score=138.14 Aligned_cols=160 Identities=17% Similarity=0.143 Sum_probs=113.0
Q ss_pred cceEEEECCCCCCHHHHHHHHHhCCC-CCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCCh----hhHH---Hhcc
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYDRF-ISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFP----AMRE---LSIS 120 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~----~~~~---~~~~ 120 (253)
...|+|+|++|||||||+++|.+... ...++.++.......+.+ ++ ...+.+||+||..+.. .+.. ..++
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~-~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~e 234 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEV-SE-EERFTLADIPGIIEGASEGKGLGLEFLRHIA 234 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEEC-SS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEe-cC-cceEEEEeccccccchhhhhhhhHHHHHHHH
Confidence 35689999999999999999998653 345555655555566666 32 2367899999975421 1112 2345
Q ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHHHhcC--CCCCEEEEEecCCCCCccccHHHHHHHHHhcCCCcEEEeccCCCCC
Q psy549 121 TADAFVLVYAVDDASTWDVVKDLREQIVNKRG--LMVPIVVVGNKCELEFKDVRREIAETIALYDWQCGFVECSAKENYN 198 (253)
Q Consensus 121 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 198 (253)
.++.+++|+|++ ..++..+..|...+..... ...|.++|+||+|+... ........... ..+.+++.+||+++.|
T Consensus 235 ra~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~-~~~~~l~~~l~-~~g~~vi~iSA~~g~g 311 (416)
T 1udx_A 235 RTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE-EAVKALADALA-REGLAVLPVSALTGAG 311 (416)
T ss_dssp SSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH-HHHHHHHHHHH-TTTSCEEECCTTTCTT
T ss_pred HHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH-HHHHHHHHHHH-hcCCeEEEEECCCccC
Confidence 799999999998 5566677777666555321 24799999999998764 22222222222 3467899999999999
Q ss_pred HHHHHHHHHHHHHHh
Q psy549 199 IVQVFKELLAQAKVQ 213 (253)
Q Consensus 199 i~~l~~~l~~~~~~~ 213 (253)
+++++++|.+.+...
T Consensus 312 i~eL~~~i~~~l~~~ 326 (416)
T 1udx_A 312 LPALKEALHALVRST 326 (416)
T ss_dssp HHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999998654
No 175
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.73 E-value=4.5e-17 Score=148.02 Aligned_cols=116 Identities=19% Similarity=0.175 Sum_probs=82.4
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCCCCCCcccc-----------------ceeeeeeeEEcCCCcEEEEEEEeCCCCC
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDRFISRYKET-----------------VEELHRGEYELPDGAQLTLDILDTSGAY 109 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t-----------------~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 109 (253)
....+|+|+|++|+|||||+++|++.........+ ..........+ ....+.+.||||||+.
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~-~~~~~~~nliDTpG~~ 85 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPL-LFRGHRVFLLDAPGYG 85 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEE-EETTEEEEEEECCCSG
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEE-eeCCEEEEEEeCCCcc
Confidence 45679999999999999999999953321000000 01222222233 2234788999999999
Q ss_pred CChhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCC
Q psy549 110 QFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELE 167 (253)
Q Consensus 110 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 167 (253)
+|...+..+++.+|++++|+|+++...... ..++..+.. .++|+++|+||+|+.
T Consensus 86 ~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt-~~~~~~~~~---~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 86 DFVGEIRGALEAADAALVAVSAEAGVQVGT-ERAWTVAER---LGLPRMVVVTKLDKG 139 (665)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHH---TTCCEEEEEECGGGC
T ss_pred chHHHHHHHHhhcCcEEEEEcCCcccchhH-HHHHHHHHH---ccCCEEEEecCCchh
Confidence 999999999999999999999988755443 344444433 468999999999987
No 176
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.72 E-value=3.5e-17 Score=132.87 Aligned_cols=117 Identities=21% Similarity=0.282 Sum_probs=85.6
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCCC--CCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcc-----
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDRF--ISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIS----- 120 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~----- 120 (253)
..++|+|+|++|+|||||+|+|++... ...+..++.......+.. ++ ..+.||||||++++......+++
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~ 111 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM-GG--FTINIIDTPGLVEAGYVNHQALELIKGF 111 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEE-TT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEE-CC--eeEEEEECCCCCCcccchHHHHHHHHHH
Confidence 569999999999999999999999774 455556565555566666 44 47899999999887655444332
Q ss_pred ----cCCEEEEEEECCChhhHHHH-HHHHHHHHHhcCCC--CCEEEEEecCCCCC
Q psy549 121 ----TADAFVLVYAVDDASTWDVV-KDLREQIVNKRGLM--VPIVVVGNKCELEF 168 (253)
Q Consensus 121 ----~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~--~piilv~nK~Dl~~ 168 (253)
.+|++++|++++... +... ..|+..+......+ .|+++|+||+|+..
T Consensus 112 l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 112 LVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp TTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred HhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 789999999998754 3332 45666666543333 49999999999853
No 177
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.71 E-value=2.5e-17 Score=154.14 Aligned_cols=160 Identities=16% Similarity=0.121 Sum_probs=104.8
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCC-------CCC--Ccc-----ccce-eeeeeeEEcCCCcEEEEEEEeCCCCCC
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDR-------FIS--RYK-----ETVE-ELHRGEYELPDGAQLTLDILDTSGAYQ 110 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~-------~~~--~~~-----~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~ 110 (253)
....++|+++|++++|||||+++|++.. +.. ... .+.+ +.....+.+ +.....+.||||||+++
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f-~~~~~kI~IIDTPGHed 371 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEY-DTPTRHYAHVDCPGHAD 371 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEE-ECSSCEEEEEECCCHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEE-cCCCEEEEEEECCChHH
Confidence 4567999999999999999999998631 100 000 0000 111122233 33345789999999999
Q ss_pred ChhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCC-EEEEEecCCCCCcc-c---cHHHHHHHHHhcC-
Q psy549 111 FPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVP-IVVVGNKCELEFKD-V---RREIAETIALYDW- 184 (253)
Q Consensus 111 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~-~---~~~~~~~~~~~~~- 184 (253)
|...+...+..+|++|+|+|++++...+. ..++..+.. .++| +++|+||+|+.+.. . ..+....+.....
T Consensus 372 F~~~mi~gas~AD~aILVVDAtdGv~~QT-rEhL~ll~~---lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~ 447 (1289)
T 3avx_A 372 YVKNMITGAAQMDGAILVVAATDGPMPQT-REHILLGRQ---VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDF 447 (1289)
T ss_dssp HHHHHHHTSCCCSEEEEEEETTTCSCTTH-HHHHHHHHH---HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhhCCEEEEEEcCCccCcHHH-HHHHHHHHH---cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccc
Confidence 98888888999999999999998754433 334443333 3478 78999999997531 1 1122333332122
Q ss_pred ---CCcEEEeccCCC--------CCHHHHHHHHHHHH
Q psy549 185 ---QCGFVECSAKEN--------YNIVQVFKELLAQA 210 (253)
Q Consensus 185 ---~~~~~~~Sa~~~--------~~i~~l~~~l~~~~ 210 (253)
.++++++||++| .|+.++++.|...+
T Consensus 448 ~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I 484 (1289)
T 3avx_A 448 PGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYI 484 (1289)
T ss_dssp CTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred cccceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence 478999999999 35778887776654
No 178
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.70 E-value=2.1e-16 Score=144.16 Aligned_cols=116 Identities=18% Similarity=0.207 Sum_probs=83.9
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhC--CCC------C-----C------ccccceeeeeeeEEcCCCcEEEEEEEeCCC
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYD--RFI------S-----R------YKETVEELHRGEYELPDGAQLTLDILDTSG 107 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~--~~~------~-----~------~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g 107 (253)
....+|+|+|++|+|||||+++|+.. .+. . + ....+.......+.+ + .+.+.||||||
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~-~--~~~i~liDTPG 86 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFW-K--DHRINIIDTPG 86 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEE-T--TEEEEEECCCS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEE-C--CeEEEEEECcC
Confidence 45789999999999999999999842 110 0 0 001111222223333 2 36789999999
Q ss_pred CCCChhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc
Q psy549 108 AYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK 169 (253)
Q Consensus 108 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 169 (253)
+.+|...+..+++.+|++|+|+|+++...+.....|.. +.. .++|+++|+||+|+...
T Consensus 87 ~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~---~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 87 HVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK---YKVPRIAFANKMDKTGA 144 (691)
T ss_dssp STTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTTC
T ss_pred ccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH---cCCCEEEEEECCCcccC
Confidence 99999999999999999999999999888777665654 332 46899999999998754
No 179
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.69 E-value=2.6e-17 Score=140.86 Aligned_cols=85 Identities=24% Similarity=0.304 Sum_probs=48.5
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCCC-CCCccccceeeeeeeEEc----C----------------CC-cEEEEEEEeCCC
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDRF-ISRYKETVEELHRGEYEL----P----------------DG-AQLTLDILDTSG 107 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~----~----------------~~-~~~~~~l~D~~g 107 (253)
++|+|+|.+|||||||+|+|++... ...++.++.+...+...+ + ++ ..+.+.||||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 5899999999999999999998763 456666666544443211 0 22 247899999999
Q ss_pred CCCC----hhhHHH---hcccCCEEEEEEECCCh
Q psy549 108 AYQF----PAMREL---SISTADAFVLVYAVDDA 134 (253)
Q Consensus 108 ~~~~----~~~~~~---~~~~~d~~i~v~d~~~~ 134 (253)
.... ..+... .++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 8642 223332 46889999999999875
No 180
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.69 E-value=6.1e-18 Score=151.66 Aligned_cols=148 Identities=24% Similarity=0.260 Sum_probs=80.7
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCC--CCCC------------------------------ccccceeeeeeeEEcC
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDR--FISR------------------------------YKETVEELHRGEYELP 93 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~--~~~~------------------------------~~~t~~~~~~~~~~~~ 93 (253)
.+..++|+|+|++++|||||+++|+... +... ...++.+.....+..
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~- 252 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES- 252 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe-
Confidence 3567899999999999999999997421 1100 112222333333333
Q ss_pred CCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEEEECCChh---hH----HHHHHHHHHHHHhcCCCCC-EEEEEecCC
Q psy549 94 DGAQLTLDILDTSGAYQFPAMRELSISTADAFVLVYAVDDAS---TW----DVVKDLREQIVNKRGLMVP-IVVVGNKCE 165 (253)
Q Consensus 94 ~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~----~~~~~~~~~~~~~~~~~~p-iilv~nK~D 165 (253)
....+.||||||+++|...+...+..+|++|+|+|++++. .+ +... .+..+.. .++| +++|+||+|
T Consensus 253 --~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e-~l~~~~~---lgip~iIvviNKiD 326 (592)
T 3mca_A 253 --DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTRE-HAYLLRA---LGISEIVVSVNKLD 326 (592)
T ss_dssp --------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHH-HHHHHHH---SSCCCEEEEEECGG
T ss_pred --CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHH-HHHHHHH---cCCCeEEEEEeccc
Confidence 2357899999999999888888889999999999998642 11 1111 1122222 3455 999999999
Q ss_pred CCCc--cccHHHHHHHHHh---cC-----CCcEEEeccCCCCCHH
Q psy549 166 LEFK--DVRREIAETIALY---DW-----QCGFVECSAKENYNIV 200 (253)
Q Consensus 166 l~~~--~~~~~~~~~~~~~---~~-----~~~~~~~Sa~~~~~i~ 200 (253)
+.+. .........+... .. .++++++||++|.||.
T Consensus 327 l~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 327 LMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp GGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred cccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 8752 2222222222221 12 2479999999999998
No 181
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.69 E-value=7.2e-17 Score=136.90 Aligned_cols=158 Identities=16% Similarity=0.124 Sum_probs=102.1
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCCC-CCCccccceeee-------------ee-------------------------
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDRF-ISRYKETVEELH-------------RG------------------------- 88 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~-------------~~------------------------- 88 (253)
....|+|+|++|||||||+|+|++..+ +......+.... ..
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 345999999999999999999999776 222211111000 00
Q ss_pred --------------eEEcCCCcEEEEEEEeCCCCCCC-------------hhhHHHhcccCCEEEEEEECCChhhHHHHH
Q psy549 89 --------------EYELPDGAQLTLDILDTSGAYQF-------------PAMRELSISTADAFVLVYAVDDASTWDVVK 141 (253)
Q Consensus 89 --------------~~~~~~~~~~~~~l~D~~g~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 141 (253)
.+.+.......+++|||||..++ ..+...+++.+|++|+|++..+..... .
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~ 190 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--S 190 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--C
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--H
Confidence 00110111235789999998876 566677899999999999875433221 3
Q ss_pred HHHHHHHHhcCCCCCEEEEEecCCCCCc-cccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHHHHHH
Q psy549 142 DLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLA 208 (253)
Q Consensus 142 ~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 208 (253)
.|+..+......+.|+++|+||+|+... ....+..+.+.. ..+.+|+++++.++.++++.+..+..
T Consensus 191 ~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~v~~~s~~~i~~~~~~~~~ 257 (360)
T 3t34_A 191 DAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSF-KLKYPWVGVVNRSQADINKNVDMIAA 257 (360)
T ss_dssp HHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSS-CCSSCCEEECCCCHHHHHTTCCHHHH
T ss_pred HHHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccc-cccCCeEEEEECChHHhccCCCHHHH
Confidence 3444444444456899999999998764 333333333333 45678999999998888776555433
No 182
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.68 E-value=3.4e-17 Score=135.46 Aligned_cols=160 Identities=18% Similarity=0.139 Sum_probs=82.9
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhC-CCCCCc--------cccce-eeeeeeEEcCCCcEEEEEEEeCCCC-------C
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYD-RFISRY--------KETVE-ELHRGEYELPDGAQLTLDILDTSGA-------Y 109 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~-~~~~~~--------~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~-------~ 109 (253)
.-.++|+|+|++|+|||||+++|.+. .++... ..+.. ......+.. ++..+.+++||++|. +
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~-~~~~~~ltv~Dt~g~~~~~~~~e 94 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEE-RGVKLRLTVVDTPGYGDAINCRD 94 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC----CCEEEEEEEEC----------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecC-CCcccCcchhhhhhhhhhcCcHH
Confidence 34589999999999999999998875 443222 11111 111222222 445678999999998 5
Q ss_pred CChhhHH-------Hhccc-------------CCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc
Q psy549 110 QFPAMRE-------LSIST-------------ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK 169 (253)
Q Consensus 110 ~~~~~~~-------~~~~~-------------~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 169 (253)
.+..+.. .+++. +++++++.+++. .+++.+.. ..+... ....|+++|+||+|+.+.
T Consensus 95 ~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~--~~l~~l-~~~~~iilV~~K~Dl~~~ 170 (301)
T 2qnr_A 95 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDV--AFMKAI-HNKVNIVPVIAKADTLTL 170 (301)
T ss_dssp -CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHH--HHHHHH-TTTSCEEEEECCGGGSCH
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHH--HHHHHH-HhcCCEEEEEEeCCCCCH
Confidence 5655554 33332 233444444322 12333331 222222 246799999999998764
Q ss_pred c---ccHHHHHHHHHhcCCCcEEEeccCCCCCHHHHHHHHHHHHHHh
Q psy549 170 D---VRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQAKVQ 213 (253)
Q Consensus 170 ~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 213 (253)
. ...+.+..++. ..+++++++||+++ +++++|.++++.+...
T Consensus 171 ~e~~~~~~~~~~~~~-~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~ 215 (301)
T 2qnr_A 171 KERERLKKRILDEIE-EHNIKIYHLPDAES-DEDEDFKEQTRLLKAS 215 (301)
T ss_dssp HHHHHHHHHHHHHHH-HTTCCCCCCC----------CHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHH-HcCCeEEecCCccc-cccHHHHHHHHHhhcC
Confidence 2 12234455555 45689999999999 9999999999988543
No 183
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.68 E-value=2.3e-15 Score=137.47 Aligned_cols=120 Identities=17% Similarity=0.142 Sum_probs=84.7
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCC--CCC-----------Cc------cccceeeeeeeEEcC----CCcEEEEEE
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDR--FIS-----------RY------KETVEELHRGEYELP----DGAQLTLDI 102 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~--~~~-----------~~------~~t~~~~~~~~~~~~----~~~~~~~~l 102 (253)
.....+|+|+|+.|+|||||+++|+... +.. ++ ...+.......+.+. ++..+.+.|
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~l 86 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINI 86 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEE
Confidence 3456899999999999999999998531 110 00 011111111222221 234478999
Q ss_pred EeCCCCCCChhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc
Q psy549 103 LDTSGAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK 169 (253)
Q Consensus 103 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 169 (253)
|||||+.+|...+..+++.+|++|+|+|+++.........|.. ... .++|+++|+||+|+...
T Consensus 87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~-~~~---~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQ-ANK---YKVPRIAFVNKMDRMGA 149 (704)
T ss_pred EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHH-HHH---cCCCEEEEEeCCCcccc
Confidence 9999999999999999999999999999998876655444433 222 46899999999998654
No 184
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.67 E-value=2.4e-15 Score=137.24 Aligned_cols=116 Identities=20% Similarity=0.214 Sum_probs=84.5
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHh--CCCCC-----------C------ccccceeeeeeeEEcCCCcEEEEEEEeCCC
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLY--DRFIS-----------R------YKETVEELHRGEYELPDGAQLTLDILDTSG 107 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~--~~~~~-----------~------~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g 107 (253)
....+|+|+|++|+|||||+++|+. +.+.. + ...++.......+.+ + .+.+.||||||
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~-~--~~~i~liDTPG 84 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAW-E--GHRVNIIDTPG 84 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEE-T--TEEEEEECCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEE-C--CeeEEEEECcC
Confidence 4568999999999999999999995 22210 0 011112222233344 2 36789999999
Q ss_pred CCCChhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc
Q psy549 108 AYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK 169 (253)
Q Consensus 108 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 169 (253)
+.+|...+..+++.+|++|+|+|+++..++.....|.. +.. .++|+++|+||+|+...
T Consensus 85 ~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~---~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 85 HVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATT---YGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp CSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTTC
T ss_pred CcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHH---cCCCEEEEEECCCcccc
Confidence 99999999999999999999999999877766555543 333 46899999999998764
No 185
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.67 E-value=8.3e-17 Score=142.42 Aligned_cols=128 Identities=16% Similarity=0.243 Sum_probs=84.0
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCC--CCC--C------ccccc----------e-eeeeeeEEcCCCcEEEEEEEeCC
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDR--FIS--R------YKETV----------E-ELHRGEYELPDGAQLTLDILDTS 106 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~--~~~--~------~~~t~----------~-~~~~~~~~~~~~~~~~~~l~D~~ 106 (253)
...+|+|+|++|+|||||+++|+... +.. . ...+. . ........+ +...+.+.|||||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~-~~~~~~i~liDTP 90 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQF-PYHDCLVNLLDTP 90 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEE-EETTEEEEEECCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEE-EECCeEEEEEECC
Confidence 56899999999999999999999632 100 0 00000 0 111112222 2234688999999
Q ss_pred CCCCChhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHH
Q psy549 107 GAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIAL 181 (253)
Q Consensus 107 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~ 181 (253)
|+.+|...+..+++.+|++|+|+|++++..... ..++..+ ...++|+++|+||+|+..... .+..+.+..
T Consensus 91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~~~~~~---~~~~ipiivviNK~Dl~~~~~-~~~~~~i~~ 160 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RKLMEVT---RLRDTPILTFMNKLDRDIRDP-MELLDEVEN 160 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-HHHHHHH---TTTTCCEEEEEECTTSCCSCH-HHHHHHHHH
T ss_pred CChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-HHHHHHH---HHcCCCEEEEEcCcCCccccH-HHHHHHHHH
Confidence 999999988999999999999999998644322 2222222 225689999999999976532 233444443
No 186
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.67 E-value=5.2e-16 Score=129.19 Aligned_cols=111 Identities=15% Similarity=0.124 Sum_probs=68.2
Q ss_pred EEEEEEeCCCCCC-------------ChhhHHHhcccCCEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCCEEEEEec
Q psy549 98 LTLDILDTSGAYQ-------------FPAMRELSISTADAFVLVYAVDDAS-TWDVVKDLREQIVNKRGLMVPIVVVGNK 163 (253)
Q Consensus 98 ~~~~l~D~~g~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK 163 (253)
..+.||||||... +......++..+|++++|+|..+.. .......+... ....+.|+++|+||
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~---~~~~~~~~i~v~NK 207 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKE---VDPEGKRTIGVITK 207 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHH---HCSSCSSEEEEEEC
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHH---hCCCCCcEEEEEcC
Confidence 4689999999764 3445556788999999999974322 11111122222 22356899999999
Q ss_pred CCCCCccc-cHHHHHHHHHhcCCCcEEEecc---CC---CCCHHHHHHHHHHHHHH
Q psy549 164 CELEFKDV-RREIAETIALYDWQCGFVECSA---KE---NYNIVQVFKELLAQAKV 212 (253)
Q Consensus 164 ~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~Sa---~~---~~~i~~l~~~l~~~~~~ 212 (253)
+|+..... ..+..+... ......++++++ .+ +.|+.++++.+.+.+..
T Consensus 208 ~Dl~~~~~~~~~~~~~~~-~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 208 LDLMDKGTDAMEVLTGRV-IPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKN 262 (315)
T ss_dssp TTSSCSSCCCHHHHTTSS-SCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHT
T ss_pred cccCCcchHHHHHHhCCC-ccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhC
Confidence 99876532 222222100 012255666654 44 78999999998887754
No 187
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.66 E-value=2.1e-16 Score=128.85 Aligned_cols=118 Identities=22% Similarity=0.219 Sum_probs=81.6
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCCC--CCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHH-------H-
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDRF--ISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRE-------L- 117 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~-------~- 117 (253)
..++|+++|.+|+|||||+|+|++..+ ......++.......+.. + .+.+.+|||||..++..... .
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~-~--~~~l~iiDTpG~~~~~~~~~~~~~~i~~~ 114 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSR-A--GFTLNIIDTPGLIEGGYINDMALNIIKSF 114 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEE-T--TEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEee-C--CeEEEEEECCCCCCCccchHHHHHHHHHH
Confidence 469999999999999999999998775 344444444443333433 3 36789999999877642221 1
Q ss_pred -hcccCCEEEEEEECCChhhHHH-HHHHHHHHHHhcCCC--CCEEEEEecCCCCCc
Q psy549 118 -SISTADAFVLVYAVDDASTWDV-VKDLREQIVNKRGLM--VPIVVVGNKCELEFK 169 (253)
Q Consensus 118 -~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~ 169 (253)
..+.+|++++|+|++.. ++.. ...|+..+......+ .|+++|+||+|+...
T Consensus 115 ~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 115 LLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP 169 (270)
T ss_dssp TTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred hhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCc
Confidence 13479999999998763 2333 235666665543333 699999999998654
No 188
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.65 E-value=5.1e-17 Score=134.47 Aligned_cols=135 Identities=17% Similarity=0.062 Sum_probs=105.4
Q ss_pred HHHHHHHhCCCC-CCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhhHHHhcccCCEEEEEEECCChh-hHHHHH
Q psy549 64 SIISQFLYDRFI-SRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLVYAVDDAS-TWDVVK 141 (253)
Q Consensus 64 sLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~ 141 (253)
+|+.+++.+.|. ..+.+|.++.+...+.. ++ .+++||+ +++|..++..+++++|++|+|||++++. ++..+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~~~~~~-~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVEYTPDE-TG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEEEECCC-SS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEEEEEcC-CC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence 688888888887 77888888666544322 33 6889999 8999999999999999999999999987 788889
Q ss_pred HHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHHhcCC-CcEEEeccCCCCCHHHHHHHHHH
Q psy549 142 DLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIALYDWQ-CGFVECSAKENYNIVQVFKELLA 208 (253)
Q Consensus 142 ~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~l~~ 208 (253)
.|+..+.. .++|+++|+||+|+.+.... +..+.+...... .++++|||++|.|++++|..+..
T Consensus 106 ~~l~~~~~---~~~piilv~NK~DL~~~~~v-~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 106 KFLVLAEK---NELETVMVINKMDLYDEDDL-RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp HHHHHHHH---TTCEEEEEECCGGGCCHHHH-HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred HHHHHHHH---CCCCEEEEEeHHHcCCchhH-HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence 99887654 46899999999999764221 223344432211 78999999999999999988754
No 189
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.64 E-value=2.4e-16 Score=133.37 Aligned_cols=104 Identities=20% Similarity=0.232 Sum_probs=72.3
Q ss_pred EEEEEEeCCCCCCChhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHH
Q psy549 98 LTLDILDTSGAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAE 177 (253)
Q Consensus 98 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~ 177 (253)
+.+.||||||... .....+..+|++++|+|......+..+... ....|+++|+||+|+...........
T Consensus 172 ~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~~--------~~~~p~ivVlNK~Dl~~~~~~~~~~~ 240 (355)
T 3p32_A 172 FDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKKG--------VLELADIVVVNKADGEHHKEARLAAR 240 (355)
T ss_dssp CCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCTT--------SGGGCSEEEEECCCGGGHHHHHHHHH
T ss_pred CCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHHh--------HhhcCCEEEEECCCCcChhHHHHHHH
Confidence 5788999999543 233456889999999998765443222210 12358999999999875422222222
Q ss_pred HHHHh---------cCCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy549 178 TIALY---------DWQCGFVECSAKENYNIVQVFKELLAQAKV 212 (253)
Q Consensus 178 ~~~~~---------~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 212 (253)
.+... .|..+++++||++|.|+++++++|.+.+..
T Consensus 241 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 241 ELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp HHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 23221 346889999999999999999999998865
No 190
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.63 E-value=1.5e-14 Score=121.64 Aligned_cols=85 Identities=20% Similarity=0.219 Sum_probs=62.9
Q ss_pred cceEEEECCCCCCHHHHHHHHHhCCC-CCCccccceeeeeeeEEcCCCc--------------EEEEEEEeCCCCCCChh
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYDRF-ISRYKETVEELHRGEYELPDGA--------------QLTLDILDTSGAYQFPA 113 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~--------------~~~~~l~D~~g~~~~~~ 113 (253)
.++|+|+|.+|||||||+|+|++... ..+++.++.....+.+.+++.. +..+++||+||..++.+
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence 37899999999999999999999774 5567777776666677773321 24689999999988753
Q ss_pred h-------HHHhcccCCEEEEEEECCC
Q psy549 114 M-------RELSISTADAFVLVYAVDD 133 (253)
Q Consensus 114 ~-------~~~~~~~~d~~i~v~d~~~ 133 (253)
. ....++.+|++++|+|+++
T Consensus 82 ~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 82 KGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred ccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 2 1235789999999999986
No 191
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.60 E-value=1.3e-15 Score=128.52 Aligned_cols=104 Identities=16% Similarity=0.204 Sum_probs=64.1
Q ss_pred EEEEEEeCCCCCCChhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHH
Q psy549 98 LTLDILDTSGAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAE 177 (253)
Q Consensus 98 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~ 177 (253)
+.+.|+||+|.... .......+|++++|+|+..+.....+.. .+ ...|.++|+||+|+.+.........
T Consensus 167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i-----l~~~~ivVlNK~Dl~~~~~~~~~~~ 235 (349)
T 2www_A 167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI-----IEMADLVAVTKSDGDLIVPARRIQA 235 (349)
T ss_dssp CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHHHHHHHH
T ss_pred CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH-----HhcCCEEEEeeecCCCchhHHHHHH
Confidence 46789999996422 2345678999999999987543221111 11 2368899999999864311111122
Q ss_pred HHHH---------hcCCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy549 178 TIAL---------YDWQCGFVECSAKENYNIVQVFKELLAQAKV 212 (253)
Q Consensus 178 ~~~~---------~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 212 (253)
.+.. ..+..+++.+|+++|.|+++++++|.+.+..
T Consensus 236 ~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~ 279 (349)
T 2www_A 236 EYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL 279 (349)
T ss_dssp HHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 2211 0235678999999999999999999987754
No 192
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.60 E-value=1e-15 Score=131.35 Aligned_cols=158 Identities=16% Similarity=0.210 Sum_probs=77.3
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCCCC-CCc-------cccce-eeeeeeEEcCCCcEEEEEEEeCCCCCCCh-----
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDRFI-SRY-------KETVE-ELHRGEYELPDGAQLTLDILDTSGAYQFP----- 112 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~~~-~~~-------~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~----- 112 (253)
.-.++|+|+|++|+|||||++.|++..+. ... ..+.. ......+.. ++....+++||++|...+.
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~-~~~~~~Ltv~Dt~g~~~~~~~~~~ 107 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKE-GGVQLLLTIVDTPGFGDAVDNSNC 107 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC-------CEEEEEEECC-----------
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEec-CCcccceeeeechhhhhhccchhh
Confidence 34578999999999999999999987652 211 11221 112222222 3444679999999976542
Q ss_pred --hhH------------------HHhcccCCEEEEEEECCCh-hhHHHHH-HHHHHHHHhcCCCCCEEEEEecCCCCCc-
Q psy549 113 --AMR------------------ELSISTADAFVLVYAVDDA-STWDVVK-DLREQIVNKRGLMVPIVVVGNKCELEFK- 169 (253)
Q Consensus 113 --~~~------------------~~~~~~~d~~i~v~d~~~~-~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~- 169 (253)
.+. ..++.++++.+++|..... .++.... .|+..+. .++|+++|+||+|+...
T Consensus 108 ~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~~~ 183 (418)
T 2qag_C 108 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----EKVNIIPLIAKADTLTPE 183 (418)
T ss_dssp CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----TTSEEEEEEESTTSSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----ccCcEEEEEEcccCccHH
Confidence 111 1133455555555555442 3444443 3554442 36899999999998764
Q ss_pred cccH--HHHHHHHHhcCCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy549 170 DVRR--EIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQA 210 (253)
Q Consensus 170 ~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 210 (253)
.+.. ..+..... ..+++++++|++++.++.++|..+...+
T Consensus 184 ev~~~k~~i~~~~~-~~~i~~~~~sa~~~~~v~~~~~~l~~~i 225 (418)
T 2qag_C 184 ECQQFKKQIMKEIQ-EHKIKIYEFPETDDEEENKLVKKIKDRL 225 (418)
T ss_dssp HHHHHHHHHHHHHH-HHTCCCCCCC-----------------C
T ss_pred HHHHHHHHHHHHHH-HcCCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence 2221 23333333 3478899999999999999887777654
No 193
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.59 E-value=1.9e-15 Score=128.68 Aligned_cols=116 Identities=16% Similarity=0.127 Sum_probs=94.1
Q ss_pred EEEEEEeCCCCCCChhhHHHhcccCCEEEEEEECCC----------hhhHHHHHHHHHHHHHh-cCCCCCEEEEEecCCC
Q psy549 98 LTLDILDTSGAYQFPAMRELSISTADAFVLVYAVDD----------ASTWDVVKDLREQIVNK-RGLMVPIVVVGNKCEL 166 (253)
Q Consensus 98 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl 166 (253)
+.+++|||+|++.++..|..++++++++|+|||+++ ..+|.....|+..+... ...++|++||+||+|+
T Consensus 217 v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~DL 296 (402)
T 1azs_C 217 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 296 (402)
T ss_dssp EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHHH
T ss_pred ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChhh
Confidence 679999999999999999999999999999999999 88999999999888764 2367999999999998
Q ss_pred CCcc----c---------------------------cHHHHHHH-----HHhc-------CCCcEEEeccCCCCCHHHHH
Q psy549 167 EFKD----V---------------------------RREIAETI-----ALYD-------WQCGFVECSAKENYNIVQVF 203 (253)
Q Consensus 167 ~~~~----~---------------------------~~~~~~~~-----~~~~-------~~~~~~~~Sa~~~~~i~~l~ 203 (253)
.... + ..+.+..+ .... ..+.+++|||+++.||.++|
T Consensus 297 ~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~vF 376 (402)
T 1azs_C 297 LAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVF 376 (402)
T ss_dssp HHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHHH
T ss_pred hhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHHH
Confidence 5431 1 12344443 2211 34567899999999999999
Q ss_pred HHHHHHHHHh
Q psy549 204 KELLAQAKVQ 213 (253)
Q Consensus 204 ~~l~~~~~~~ 213 (253)
.++.+.+...
T Consensus 377 ~~v~~~I~~~ 386 (402)
T 1azs_C 377 NDCRDIIQRM 386 (402)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999888655
No 194
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.58 E-value=8.5e-16 Score=129.95 Aligned_cols=160 Identities=18% Similarity=0.150 Sum_probs=92.8
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCCCC-CCccccceeee---------------------------------------
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDRFI-SRYKETVEELH--------------------------------------- 86 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~~~-~~~~~t~~~~~--------------------------------------- 86 (253)
...++|+|+|.+|||||||+|+|++..+. .....++....
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 34579999999999999999999998762 21111000000
Q ss_pred ----------eeeEEcCCCcEEEEEEEeCCCCCC-------------ChhhHHHhcccCC-EEEEEEECCChhhHHHHHH
Q psy549 87 ----------RGEYELPDGAQLTLDILDTSGAYQ-------------FPAMRELSISTAD-AFVLVYAVDDASTWDVVKD 142 (253)
Q Consensus 87 ----------~~~~~~~~~~~~~~~l~D~~g~~~-------------~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~ 142 (253)
...+.+.......+.||||||... +..+...++..++ ++++|.+++....-..
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~--- 185 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSD--- 185 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCH---
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhH---
Confidence 000111001124689999999643 3345555666665 4455566554322111
Q ss_pred HHHHHHHhcCCCCCEEEEEecCCCCCccc-cHHHHHHHHH-hcCC-CcEEEeccCCCCCHHHHHHHHHHH
Q psy549 143 LREQIVNKRGLMVPIVVVGNKCELEFKDV-RREIAETIAL-YDWQ-CGFVECSAKENYNIVQVFKELLAQ 209 (253)
Q Consensus 143 ~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~-~~~~-~~~~~~Sa~~~~~i~~l~~~l~~~ 209 (253)
+...+......+.|+++|+||+|+.+... .....+.... ...+ .+++++||+++.|+.++++++.+.
T Consensus 186 ~~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~e 255 (353)
T 2x2e_A 186 ALKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 255 (353)
T ss_dssp HHHHHHHHCTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHhCcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHHH
Confidence 22222233335689999999999876422 2222110000 0012 356789999999999999998773
No 195
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.58 E-value=1.8e-14 Score=127.99 Aligned_cols=117 Identities=15% Similarity=0.171 Sum_probs=82.9
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCC-----------------CCCCccc-cc---eeeeeeeEEcCCCcEEEEEEEeCC
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDR-----------------FISRYKE-TV---EELHRGEYELPDGAQLTLDILDTS 106 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~-----------------~~~~~~~-t~---~~~~~~~~~~~~~~~~~~~l~D~~ 106 (253)
..-+|+|+|+.++|||||..+|+... ...++.. .. .......+.+ ....+.+.|+|||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~-~~~~~~iNlIDTP 108 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQF-PYRDRVVNLLDTP 108 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEE-EETTEEEEEECCC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEE-EECCEEEEEEeCC
Confidence 56799999999999999999997211 0011100 00 0222223333 3334688999999
Q ss_pred CCCCChhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc
Q psy549 107 GAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK 169 (253)
Q Consensus 107 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 169 (253)
|+.+|.......++-+|++|+|+|+.++..-+...-|... .. .++|.++++||+|....
T Consensus 109 GHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a-~~---~~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 109 GHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVC-RM---RATPVMTFVNKMDREAL 167 (548)
T ss_dssp CGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHH-HH---TTCCEEEEEECTTSCCC
T ss_pred CcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHH-HH---hCCceEEEEecccchhc
Confidence 9999999999999999999999999998766655555443 33 45899999999998654
No 196
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.57 E-value=5.7e-15 Score=116.52 Aligned_cols=154 Identities=16% Similarity=0.096 Sum_probs=93.0
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-ee------------eeeeEEcCC-----------------CcE
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-EL------------HRGEYELPD-----------------GAQ 97 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~------------~~~~~~~~~-----------------~~~ 97 (253)
...+|+|+|.+|||||||+++|+..........+.. ++ ......+.. ...
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 347999999999999999999987522110000000 00 000111101 123
Q ss_pred EEEEEEeCCCCCCChhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc--cccHHH
Q psy549 98 LTLDILDTSGAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK--DVRREI 175 (253)
Q Consensus 98 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~ 175 (253)
+.+.+|||+|+..... .+....+.+++|+|+.+... ....+... .+.|+++|+||+|+... ....+.
T Consensus 109 ~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~--~~~~~~~~------~~~~~iiv~NK~Dl~~~~~~~~~~~ 177 (221)
T 2wsm_A 109 CDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDD--VVEKHPEI------FRVADLIVINKVALAEAVGADVEKM 177 (221)
T ss_dssp CSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTT--HHHHCHHH------HHTCSEEEEECGGGHHHHTCCHHHH
T ss_pred CCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcch--hhhhhhhh------hhcCCEEEEecccCCcchhhHHHHH
Confidence 4678999998511110 11135788999999876532 11111111 13689999999998653 122333
Q ss_pred HHHHHHhcCCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy549 176 AETIALYDWQCGFVECSAKENYNIVQVFKELLAQAKV 212 (253)
Q Consensus 176 ~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 212 (253)
.+.+.......+++++||++|.|++++|++|.+.+..
T Consensus 178 ~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 178 KADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNV 214 (221)
T ss_dssp HHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred HHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 3444443456789999999999999999999987743
No 197
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.56 E-value=6.2e-14 Score=118.47 Aligned_cols=84 Identities=18% Similarity=0.163 Sum_probs=60.8
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCCC-CCCccccceeeeeeeEEcCCC------------------cEEEEEEEeCCCCCC
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDRF-ISRYKETVEELHRGEYELPDG------------------AQLTLDILDTSGAYQ 110 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~------------------~~~~~~l~D~~g~~~ 110 (253)
++|+|+|.+|||||||+|+|++... ..+++.++.........+++. .+..+++||+||..+
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 6899999999999999999998653 455555555444444444221 235689999999876
Q ss_pred Ch-------hhHHHhcccCCEEEEEEECCC
Q psy549 111 FP-------AMRELSISTADAFVLVYAVDD 133 (253)
Q Consensus 111 ~~-------~~~~~~~~~~d~~i~v~d~~~ 133 (253)
+. ......++.+|++++|+|+++
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 53 222335789999999999986
No 198
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.55 E-value=1.4e-14 Score=128.80 Aligned_cols=121 Identities=23% Similarity=0.254 Sum_probs=80.7
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCCCC----CCccccceee--eee---eE--------------------------
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDRFI----SRYKETVEEL--HRG---EY-------------------------- 90 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~~~----~~~~~t~~~~--~~~---~~-------------------------- 90 (253)
....++|+|+|.+|+|||||+|+|++..+. ...+.|+... ... .+
T Consensus 62 ~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~ 141 (550)
T 2qpt_A 62 FDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLN 141 (550)
T ss_dssp TSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCT
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccc
Confidence 456789999999999999999999998752 3333332100 000 00
Q ss_pred -----EcCCCcEEEEEEEeCCCCCC-----------ChhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCC
Q psy549 91 -----ELPDGAQLTLDILDTSGAYQ-----------FPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLM 154 (253)
Q Consensus 91 -----~~~~~~~~~~~l~D~~g~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~ 154 (253)
.+++.....+.||||||... +......++..+|++|+|+|+++.........|+..+.. .+
T Consensus 142 ~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~ 218 (550)
T 2qpt_A 142 RFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG---HE 218 (550)
T ss_dssp TEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT---CG
T ss_pred cceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh---cC
Confidence 00000002578999999875 445666678899999999999875444444555554432 45
Q ss_pred CCEEEEEecCCCCCc
Q psy549 155 VPIVVVGNKCELEFK 169 (253)
Q Consensus 155 ~piilv~nK~Dl~~~ 169 (253)
.|+++|+||+|+...
T Consensus 219 ~pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 219 DKIRVVLNKADMVET 233 (550)
T ss_dssp GGEEEEEECGGGSCH
T ss_pred CCEEEEEECCCccCH
Confidence 799999999998765
No 199
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.54 E-value=2.2e-14 Score=133.44 Aligned_cols=118 Identities=16% Similarity=0.223 Sum_probs=85.9
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCC--CCCCc---------------cccceeeeeeeEEc-------------CCCc
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDR--FISRY---------------KETVEELHRGEYEL-------------PDGA 96 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~--~~~~~---------------~~t~~~~~~~~~~~-------------~~~~ 96 (253)
....+|+|+|++++|||||+++|+... +.... ...+.......+.+ .++.
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 345799999999999999999999642 11100 00011111111111 1455
Q ss_pred EEEEEEEeCCCCCCChhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCC
Q psy549 97 QLTLDILDTSGAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEF 168 (253)
Q Consensus 97 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 168 (253)
.+.+.||||||+.+|...+..+++.+|++|+|+|++++.+++....|.... . .++|+++|+||+|+..
T Consensus 97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~-~---~~~p~ilviNK~D~~~ 164 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-G---ERIKPVVVINKVDRAL 164 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-H---TTCEEEEEEECHHHHH
T ss_pred CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-H---cCCCeEEEEECCCcch
Confidence 788999999999999999999999999999999999998888766565433 2 4589999999999863
No 200
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.53 E-value=3.4e-16 Score=124.03 Aligned_cols=153 Identities=14% Similarity=0.053 Sum_probs=86.6
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeee-------------eeEEcCCCcE-----------------
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHR-------------GEYELPDGAQ----------------- 97 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~-------------~~~~~~~~~~----------------- 97 (253)
..++|+|+|++|||||||+++|+...+...+..+....+. ..+.+.++..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 116 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL 116 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence 3589999999999999999999986554333333321111 1222211111
Q ss_pred --EEEEEEeCCCCCCChhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc-cccHH
Q psy549 98 --LTLDILDTSGAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRRE 174 (253)
Q Consensus 98 --~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~ 174 (253)
..+.++|++|.-... ..+-...+..+.+.+......... .... . ...|.++|+||+|+... ....+
T Consensus 117 ~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~--~~~~-~-----~~~~~iiv~NK~Dl~~~~~~~~~ 185 (226)
T 2hf9_A 117 DEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIE--KHPG-I-----MKTADLIVINKIDLADAVGADIK 185 (226)
T ss_dssp GGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTT--TCHH-H-----HTTCSEEEEECGGGHHHHTCCHH
T ss_pred CCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHh--hhhh-H-----hhcCCEEEEeccccCchhHHHHH
Confidence 134455655531110 011112344556666432211100 0001 1 13688999999998654 22333
Q ss_pred HHHH-HHHhcCCCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy549 175 IAET-IALYDWQCGFVECSAKENYNIVQVFKELLAQAK 211 (253)
Q Consensus 175 ~~~~-~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 211 (253)
.... +.......+++++||++|.|++++|+++.+.+.
T Consensus 186 ~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 223 (226)
T 2hf9_A 186 KMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVK 223 (226)
T ss_dssp HHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHH
Confidence 3333 333345679999999999999999999988774
No 201
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.51 E-value=1.7e-14 Score=121.30 Aligned_cols=103 Identities=17% Similarity=0.233 Sum_probs=66.1
Q ss_pred EEEEEEeCCCCCCChhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHH
Q psy549 98 LTLDILDTSGAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAE 177 (253)
Q Consensus 98 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~ 177 (253)
+.+.||||||...... .....+|++++|+|+.....+..+.. .. .++|.++|+||+|+.+.........
T Consensus 149 ~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~-----~~~p~ivv~NK~Dl~~~~~~~~~~~ 217 (341)
T 2p67_A 149 YDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---GL-----MEVADLIVINKDDGDNHTNVAIARH 217 (341)
T ss_dssp CSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---HH-----HHHCSEEEECCCCTTCHHHHHHHHH
T ss_pred CCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---hh-----hcccCEEEEECCCCCChHHHHHHHH
Confidence 5789999999765433 24688999999999976533211111 11 1258899999999876421111111
Q ss_pred HH----HHh-----cCCCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy549 178 TI----ALY-----DWQCGFVECSAKENYNIVQVFKELLAQAK 211 (253)
Q Consensus 178 ~~----~~~-----~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 211 (253)
.+ ... .|..+++++||++|.|+++++++|.+.+.
T Consensus 218 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 218 MYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 22 111 13567899999999999999999998765
No 202
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.48 E-value=1.9e-13 Score=110.61 Aligned_cols=114 Identities=11% Similarity=-0.025 Sum_probs=68.1
Q ss_pred EEEEEEeCCCCCCChhhHH------HhcccCCEEEEEEECCChhhHHHHHHHHH-HHHHhcCCCCCEEEEEecCCCCCcc
Q psy549 98 LTLDILDTSGAYQFPAMRE------LSISTADAFVLVYAVDDASTWDVVKDLRE-QIVNKRGLMVPIVVVGNKCELEFKD 170 (253)
Q Consensus 98 ~~~~l~D~~g~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~-~~~~~~~~~~piilv~nK~Dl~~~~ 170 (253)
+.+.||||||..++..... ..+.. +++++|+|+.............. ........++|+++|+||+|+....
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~ 187 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE 187 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence 4789999999876543321 23455 78888887654322222211111 1111111357999999999987542
Q ss_pred ccHHHHH----------H------------------HHHhcCCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy549 171 VRREIAE----------T------------------IALYDWQCGFVECSAKENYNIVQVFKELLAQAKV 212 (253)
Q Consensus 171 ~~~~~~~----------~------------------~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 212 (253)
...+..+ . +.......+++++||+++.|+++++++|.+.+..
T Consensus 188 ~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~ 257 (262)
T 1yrb_A 188 EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT 257 (262)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence 1111111 1 1221234588999999999999999999887753
No 203
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.48 E-value=6.2e-14 Score=126.90 Aligned_cols=115 Identities=17% Similarity=0.207 Sum_probs=81.2
Q ss_pred ceEEEECCCCCCHHHHHHHHHh--CCCC-----------CCcccc-c---eeeeeeeEEcCCCcEEEEEEEeCCCCCCCh
Q psy549 50 RRVVVMGGARVGKSSIISQFLY--DRFI-----------SRYKET-V---EELHRGEYELPDGAQLTLDILDTSGAYQFP 112 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~--~~~~-----------~~~~~t-~---~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~ 112 (253)
.+|+|+|+.++|||||..+|+. +.+. .++... . .......+.+ ....+.+.|+||||+.+|.
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~-~~~~~~iNlIDTPGH~DF~ 81 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSF-QWENTKVNIIDTPGHMDFL 81 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCC-BCSSCBCCCEECCCSSSTH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEE-EECCEEEEEEECCCcHHHH
Confidence 5899999999999999999983 2111 000000 0 0222222333 3344678999999999999
Q ss_pred hhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc
Q psy549 113 AMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK 169 (253)
Q Consensus 113 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 169 (253)
......++-+|++|+|+|+.++..-+....|.... . .++|.++++||+|....
T Consensus 82 ~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~-~---~~lp~i~~INKmDr~~a 134 (638)
T 3j25_A 82 AEVYRSLSVLDGAILLISAKDGVQAQTRILFHALR-K---MGIPTIFFINKIDQNGI 134 (638)
T ss_dssp HHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHH-H---HTCSCEECCEECCSSSC
T ss_pred HHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHH-H---cCCCeEEEEeccccccC
Confidence 99999999999999999999876555544454433 3 24799999999997654
No 204
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.47 E-value=9.8e-13 Score=111.15 Aligned_cols=118 Identities=17% Similarity=0.141 Sum_probs=86.5
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCCC-CCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChh-------hHHH
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDRF-ISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPA-------MREL 117 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-------~~~~ 117 (253)
.....+|+|+|.||||||||+|+|++... +.+++.||.+...+.+.+ ++ ..++|+|+||..+... ....
T Consensus 69 k~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~-~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~ 145 (376)
T 4a9a_A 69 RTGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRY-KG--AKIQMLDLPGIIDGAKDGRGRGKQVIA 145 (376)
T ss_dssp BCSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEE-TT--EEEEEEECGGGCCC-----CHHHHHHH
T ss_pred ecCCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEe-CC--cEEEEEeCCCccCCchhhhHHHHHHHH
Confidence 45567999999999999999999998663 688999999999999999 44 4689999999654321 1223
Q ss_pred hcccCCEEEEEEECCChhhHHHHHHHHHHHHHh--cCCCCCEEEEEecCCCCC
Q psy549 118 SISTADAFVLVYAVDDASTWDVVKDLREQIVNK--RGLMVPIVVVGNKCELEF 168 (253)
Q Consensus 118 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~~piilv~nK~Dl~~ 168 (253)
.++.+|++++|.|++++.. .......++... .-...|.++++||.|...
T Consensus 146 ~i~~ad~il~vvD~~~p~~--~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~g 196 (376)
T 4a9a_A 146 VARTCNLLFIILDVNKPLH--HKQIIEKELEGVGIRLNKTPPDILIKKKEKGG 196 (376)
T ss_dssp HHHHCSEEEEEEETTSHHH--HHHHHHHHHHHTTEEETCCCCCEEEEECSSSC
T ss_pred HHHhcCccccccccCccHH--HHHHHHHHHHHhhHhhccCChhhhhhHhhhhh
Confidence 5788999999999998643 222222333221 113468889999999643
No 205
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.42 E-value=6.8e-12 Score=114.98 Aligned_cols=119 Identities=17% Similarity=0.188 Sum_probs=81.7
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhC--------CCC-----CCcc-ccce---eeeee--eEEcC----CCcEEEEEEE
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYD--------RFI-----SRYK-ETVE---ELHRG--EYELP----DGAQLTLDIL 103 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~--------~~~-----~~~~-~t~~---~~~~~--~~~~~----~~~~~~~~l~ 103 (253)
.+.-+|+|+|+.++|||||..+|+.. ... .++. ...+ ..... .+.+. +...+.+.|+
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI 90 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI 90 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence 45569999999999999999999821 110 0000 0000 11111 22221 1235789999
Q ss_pred eCCCCCCChhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc
Q psy549 104 DTSGAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK 169 (253)
Q Consensus 104 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 169 (253)
||||+-+|.......++-+|++|+|+|+..+..-+...-|...... ++|.++|+||+|....
T Consensus 91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~----~lp~i~~iNKiDr~~a 152 (709)
T 4fn5_A 91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKY----GVPRIVYVNKMDRQGA 152 (709)
T ss_dssp CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHH----TCCEEEEEECSSSTTC
T ss_pred eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHc----CCCeEEEEccccccCc
Confidence 9999999999999999999999999999988765554555554433 4899999999997543
No 206
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.42 E-value=3e-13 Score=123.20 Aligned_cols=158 Identities=18% Similarity=0.157 Sum_probs=96.6
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCCC-CCCccccceee----------------------------------------
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDRF-ISRYKETVEEL---------------------------------------- 85 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~---------------------------------------- 85 (253)
...++|+|+|.+++|||||+|+|++..+ +.....+|+..
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 3567999999999999999999999775 33322222100
Q ss_pred -----------eeeeEEcCCCcEEEEEEEeCCCCCCC-------------hhhHHHhc-ccCCEEEEEEECCChhhHHHH
Q psy549 86 -----------HRGEYELPDGAQLTLDILDTSGAYQF-------------PAMRELSI-STADAFVLVYAVDDASTWDVV 140 (253)
Q Consensus 86 -----------~~~~~~~~~~~~~~~~l~D~~g~~~~-------------~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~ 140 (253)
....+..++. ..+.|+||||.... ..+...++ ..+|++++|.|++......+.
T Consensus 129 ~g~~~~is~~~i~l~I~~P~~--~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~ 206 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPHV--LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA 206 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETTC--CSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHH
T ss_pred cCCCCcccccceEEEEecCCC--CceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHH
Confidence 0011111111 24679999996551 12223333 578999999999875332222
Q ss_pred HHHHHHHHHhcCCCCCEEEEEecCCCCCcc-ccHHHHHH-H-HHhcCCCcEEEeccCCCCCHHHHHHHHHHH
Q psy549 141 KDLREQIVNKRGLMVPIVVVGNKCELEFKD-VRREIAET-I-ALYDWQCGFVECSAKENYNIVQVFKELLAQ 209 (253)
Q Consensus 141 ~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~-~-~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 209 (253)
..+...+ ...+.|+++|+||+|+.... ........ + .......+++.+||++|.|++++++.+.+.
T Consensus 207 l~ll~~L---~~~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 207 LKIAKEV---DPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp HHHHHHH---CTTCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred HHHHHHH---HhcCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 2223222 33568999999999987652 22221110 0 000112357789999999999999998864
No 207
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.36 E-value=6e-13 Score=112.91 Aligned_cols=91 Identities=14% Similarity=0.173 Sum_probs=54.8
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCCC-CCCccccceeeeeeeEEcCCCc--------------EEEEEEEeCCCCCCC
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDRF-ISRYKETVEELHRGEYELPDGA--------------QLTLDILDTSGAYQF 111 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~--------------~~~~~l~D~~g~~~~ 111 (253)
...++|+|+|.+|||||||+|+|++..+ ...++.++.+...+.+.+++.. ...+++||+||..++
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~ 99 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG 99 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence 4568999999999999999999998765 4566677777777777763311 235899999998876
Q ss_pred hh-------hHHHhcccCCEEEEEEECCChhhH
Q psy549 112 PA-------MRELSISTADAFVLVYAVDDASTW 137 (253)
Q Consensus 112 ~~-------~~~~~~~~~d~~i~v~d~~~~~s~ 137 (253)
.. .....++.+|++++|+|+.+..++
T Consensus 100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i 132 (396)
T 2ohf_A 100 AHNGQGLGNAFLSHISACDGIFHLTRAFEDDDI 132 (396)
T ss_dssp -------CCHHHHHHHTSSSEEEEEEC------
T ss_pred cchhhHHHHHHHHHHHhcCeEEEEEecCCCcch
Confidence 54 345578999999999999875443
No 208
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.34 E-value=2.3e-12 Score=108.01 Aligned_cols=103 Identities=13% Similarity=0.110 Sum_probs=64.7
Q ss_pred EEEEEEeCCCCCCChhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc-cccHHHH
Q psy549 98 LTLDILDTSGAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK-DVRREIA 176 (253)
Q Consensus 98 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~ 176 (253)
+.+.|+||+|...-.. .....+|.+++|+|+........+... +. ..|.++|+||+|+... .......
T Consensus 148 ~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~i~~~---i~-----~~~~ivvlNK~Dl~~~~~~s~~~~ 216 (337)
T 2qm8_A 148 FDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIKKG---IF-----ELADMIAVNKADDGDGERRASAAA 216 (337)
T ss_dssp CCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CCTT---HH-----HHCSEEEEECCSTTCCHHHHHHHH
T ss_pred CCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHHHHHH---Hh-----ccccEEEEEchhccCchhHHHHHH
Confidence 4688999999765322 345789999999998654322111111 11 1356788899997532 2222223
Q ss_pred HHHHHh----c-----CCCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy549 177 ETIALY----D-----WQCGFVECSAKENYNIVQVFKELLAQAK 211 (253)
Q Consensus 177 ~~~~~~----~-----~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 211 (253)
+.+... . |..+++.+|++++.|++++++.|.+...
T Consensus 217 ~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 217 SEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 333221 1 2567899999999999999999988765
No 209
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.27 E-value=1.2e-11 Score=102.06 Aligned_cols=96 Identities=17% Similarity=0.088 Sum_probs=75.8
Q ss_pred CCCChhhHHHhcccCCEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccc-c-HHHHHHHHHhcC
Q psy549 108 AYQFPAMRELSISTADAFVLVYAVDDAS-TWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDV-R-REIAETIALYDW 184 (253)
Q Consensus 108 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~-~~~~~~~~~~~~ 184 (253)
++++..+...+++++|++++|+|++++. ++..+..|+..+.. .++|+++|+||+|+.+... . .+....+.. ..
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~-~~ 141 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLLNEEEKKELERWISIYR-DA 141 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHHHHHHHHHHHHH-HT
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCCCccccHHHHHHHHHHH-HC
Confidence 7778888888999999999999999886 88888999886655 5689999999999976421 1 222233333 34
Q ss_pred CCcEEEeccCCCCCHHHHHHHHH
Q psy549 185 QCGFVECSAKENYNIVQVFKELL 207 (253)
Q Consensus 185 ~~~~~~~Sa~~~~~i~~l~~~l~ 207 (253)
+.+++++||++|.|++++++.+.
T Consensus 142 g~~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 142 GYDVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp TCEEEECCTTTCTTHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHhhcc
Confidence 67899999999999999998764
No 210
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.26 E-value=2.2e-10 Score=97.44 Aligned_cols=88 Identities=17% Similarity=0.219 Sum_probs=67.2
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCCC--CCCccccceeeeeeeEEcCCCc--------------EEEEEEEeCCCCC
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDRF--ISRYKETVEELHRGEYELPDGA--------------QLTLDILDTSGAY 109 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~--------------~~~~~l~D~~g~~ 109 (253)
.....+|+|+|++|||||||+|.|++... ...++.++.+...+.+.+++.. +..+.+||+||..
T Consensus 17 v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~ 96 (392)
T 1ni3_A 17 PGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLT 96 (392)
T ss_dssp SSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGC
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccc
Confidence 34568999999999999999999999663 5677777888888888773311 1357899999954
Q ss_pred C-------ChhhHHHhcccCCEEEEEEECCC
Q psy549 110 Q-------FPAMRELSISTADAFVLVYAVDD 133 (253)
Q Consensus 110 ~-------~~~~~~~~~~~~d~~i~v~d~~~ 133 (253)
. +.......++.+|++++|+|+.+
T Consensus 97 ~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 97 KGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3 33344556789999999999864
No 211
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.20 E-value=1e-11 Score=95.38 Aligned_cols=106 Identities=11% Similarity=0.073 Sum_probs=72.5
Q ss_pred CCCCCChhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHH---hc--CCCCCEEEEEecC-CCCCccccHHHHHHH
Q psy549 106 SGAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVN---KR--GLMVPIVVVGNKC-ELEFKDVRREIAETI 179 (253)
Q Consensus 106 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~---~~--~~~~piilv~nK~-Dl~~~~~~~~~~~~~ 179 (253)
+|++.++.+|..||+++|++|||+|.+|.+-++ ....+..+.. .. ..+.|++|++||. |+++.....++.+.+
T Consensus 110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~L 188 (227)
T 3l82_B 110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHEL 188 (227)
T ss_dssp -------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHHT
T ss_pred CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHHc
Confidence 478899999999999999999999999875433 2222222222 11 1468999999995 787765556666665
Q ss_pred HHh--cCCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy549 180 ALY--DWQCGFVECSAKENYNIVQVFKELLAQAKV 212 (253)
Q Consensus 180 ~~~--~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 212 (253)
... ...+.+..|||++|.|+.+-++||.+.+..
T Consensus 189 ~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~ 223 (227)
T 3l82_B 189 HLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES 223 (227)
T ss_dssp TGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTT
T ss_pred CCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHh
Confidence 442 245678999999999999999999887743
No 212
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.10 E-value=1.9e-10 Score=92.66 Aligned_cols=107 Identities=9% Similarity=0.035 Sum_probs=77.4
Q ss_pred CCCCCCChhhHHHhcccCCEEEEEEECCChhhHHH---HHHHHHHHHHh-cCCCCCEEEEEec-CCCCCccccHHHHHHH
Q psy549 105 TSGAYQFPAMRELSISTADAFVLVYAVDDASTWDV---VKDLREQIVNK-RGLMVPIVVVGNK-CELEFKDVRREIAETI 179 (253)
Q Consensus 105 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~---~~~~~~~~~~~-~~~~~piilv~nK-~Dl~~~~~~~~~~~~~ 179 (253)
.+|++.++.+|..+++++|++|+|+|.+|.+-++. +..+...+... .-.+.|++|++|| .|+++.....++.+.+
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~L 273 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHEL 273 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHHc
Confidence 46789999999999999999999999999864331 21111212111 1256899999996 6888776666666666
Q ss_pred HHh--cCCCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy549 180 ALY--DWQCGFVECSAKENYNIVQVFKELLAQAK 211 (253)
Q Consensus 180 ~~~--~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 211 (253)
... ...+.+..|||.+|.|+.+-++||.+.+.
T Consensus 274 ~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~ 307 (312)
T 3l2o_B 274 HLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE 307 (312)
T ss_dssp TGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSC
T ss_pred CCccCCCcEEEEecccCCCcCHHHHHHHHHHHHH
Confidence 542 24566899999999999999999998874
No 213
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.86 E-value=1.3e-10 Score=98.65 Aligned_cols=139 Identities=14% Similarity=0.091 Sum_probs=84.4
Q ss_pred cceEEEECCCCCCHHHHHHHHHhC------CC-CCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhh-------
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYD------RF-ISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAM------- 114 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~------~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~------- 114 (253)
..+|+++|.+|+|||||+|+|++. .. ....+.|+..... +.+ +. .+.++||||.......
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~--~~~-~~---~~~liDtPG~~~~~~~~~~l~~~ 235 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIE--IPL-ES---GATLYDTPGIINHHQMAHFVDAR 235 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEE--EEC-ST---TCEEEECCSCCCCSSGGGGSCTT
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEE--EEe-CC---CeEEEeCCCcCcHHHHHHHHhHH
Confidence 458999999999999999999975 22 3444455544333 334 22 2689999996543211
Q ss_pred -HHHhc--ccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHHhcCCCcEEEe
Q psy549 115 -RELSI--STADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIALYDWQCGFVEC 191 (253)
Q Consensus 115 -~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (253)
...++ ...+.++++.+.....-+..+.. +......+.|+++++||.|..+....+...+.+.+ ..+..+.+.
T Consensus 236 ~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----l~~l~~~~~~~~~v~~k~d~~~~~~~~~~~~~~~~-~~g~~l~p~ 310 (369)
T 3ec1_A 236 DLKIITPKREIHPRVYQLNEGQTLFFGGLAR----LDYIKGGRRSFVCYMANELTVHRTKLEKADSLYAN-QLGELLSPP 310 (369)
T ss_dssp THHHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEEGGGHHHHHHH-HBTTTBCSS
T ss_pred HHHHHhcccccCceEEEEcCCceEEECCEEE----EEEccCCCceEEEEecCCcccccccHHHHHHHHHH-hcCCccCCC
Confidence 11222 56788888888743211111111 11123356899999999998876555555666666 445555555
Q ss_pred ccCCCCC
Q psy549 192 SAKENYN 198 (253)
Q Consensus 192 Sa~~~~~ 198 (253)
++.+..+
T Consensus 311 ~~~~~~~ 317 (369)
T 3ec1_A 311 SKRYAAE 317 (369)
T ss_dssp CGGGTTT
T ss_pred Cchhhhh
Confidence 5554333
No 214
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.83 E-value=2.2e-08 Score=85.71 Aligned_cols=114 Identities=15% Similarity=0.151 Sum_probs=59.8
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCCCCCC-----ccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCCh------------
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDRFISR-----YKETVEELHRGEYELPDGAQLTLDILDTSGAYQFP------------ 112 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~~~~~-----~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~------------ 112 (253)
++++|+|++|+|||||++.|++..+... .+..........+.. .+....++++|++|.....
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~-~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~ 121 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQE-SNVRLKLTIVSTVGFGDQINKEDSYKPIVEF 121 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC---CEEEEEEEEEECCCC-CCHHHHSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeec-CccccccchhhhhhhhhccccchhhhHHHHH
Confidence 4699999999999999999998654211 111111222222222 2333478999998865321
Q ss_pred --hhHHHhc-------------ccC--CE-EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc
Q psy549 113 --AMRELSI-------------STA--DA-FVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK 169 (253)
Q Consensus 113 --~~~~~~~-------------~~~--d~-~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 169 (253)
.....++ .++ |+ ++++.|...+-+..++ .+......++|+++|+||+|....
T Consensus 122 i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Di-----eilk~L~~~~~vI~Vi~KtD~Lt~ 191 (427)
T 2qag_B 122 IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDL-----VTMKKLDSKVNIIPIIAKADAISK 191 (427)
T ss_dssp HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHH-----HHHHHTCSCSEEEEEESCGGGSCH
T ss_pred HHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHH-----HHHHHHhhCCCEEEEEcchhccch
Confidence 1111111 112 23 4455555443332221 122222257899999999998765
No 215
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.78 E-value=1.7e-08 Score=85.47 Aligned_cols=97 Identities=14% Similarity=0.045 Sum_probs=71.3
Q ss_pred CCCCChhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHH----HHh
Q psy549 107 GAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETI----ALY 182 (253)
Q Consensus 107 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~----~~~ 182 (253)
..++|......+++.++++++|+|+.++. ..|...+.... .++|+++|+||+|+.......+....+ ..
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~-~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~- 127 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV-GNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAK- 127 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS-SSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh-CCCcEEEEEEChhcCCcccCHHHHHHHHHHHHH-
Confidence 45778888888999999999999999853 44555555443 368999999999997654333333222 33
Q ss_pred cCCC---cEEEeccCCCCCHHHHHHHHHHHH
Q psy549 183 DWQC---GFVECSAKENYNIVQVFKELLAQA 210 (253)
Q Consensus 183 ~~~~---~~~~~Sa~~~~~i~~l~~~l~~~~ 210 (253)
..+. +++.+||++|.|++++++.+.+..
T Consensus 128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 128 QLGLKPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp HTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 2344 789999999999999999987644
No 216
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.74 E-value=2.9e-10 Score=96.36 Aligned_cols=134 Identities=15% Similarity=0.107 Sum_probs=77.8
Q ss_pred cceEEEECCCCCCHHHHHHHHHhCC------C--CCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCChhh------
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYDR------F--ISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAM------ 114 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~~------~--~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~------ 114 (253)
..+|+++|.+|+|||||+|+|++.. . ....+.|+..... +.+.++ +.++||||......+
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~--~~~~~~----~~liDtPG~~~~~~~~~~l~~ 233 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLID--IPLDEE----SSLYDTPGIINHHQMAHYVGK 233 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEE--EESSSS----CEEEECCCBCCTTSGGGGSCH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEE--EEecCC----eEEEeCCCcCcHHHHHHHhhH
Confidence 4689999999999999999999853 1 2334444443322 334222 689999996543211
Q ss_pred --HHHh--cccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHHhcCCCcEEE
Q psy549 115 --RELS--ISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIALYDWQCGFVE 190 (253)
Q Consensus 115 --~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 190 (253)
...+ ....+.++++++.....-+..+.. +......+.|+++++||.|..+....+...+.+.+ ..+..+.+
T Consensus 234 ~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----~d~l~~~~~~~~~v~nk~d~~~~~~~~~~~~~~~~-~~g~~l~p 308 (368)
T 3h2y_A 234 QSLKLITPTKEIKPMVFQLNEEQTLFFSGLAR----FDYVSGGRRAFTCHFSNRLTIHRTKLEKADELYKN-HAGDLLSP 308 (368)
T ss_dssp HHHHHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEEHHHHHHHHHH-HBTTTBCS
T ss_pred HHHHHhccccccCceEEEEcCCCEEEEcceEE----EEEecCCCceEEEEecCccccccccHHHHHHHHHH-HhCCccCC
Confidence 1112 245677888887642211111111 11122356899999999998876666666666666 44444444
Q ss_pred ecc
Q psy549 191 CSA 193 (253)
Q Consensus 191 ~Sa 193 (253)
.++
T Consensus 309 ~~~ 311 (368)
T 3h2y_A 309 PTP 311 (368)
T ss_dssp SCH
T ss_pred Cch
Confidence 443
No 217
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.70 E-value=2.3e-08 Score=87.58 Aligned_cols=155 Identities=14% Similarity=0.086 Sum_probs=84.0
Q ss_pred CcceEEEECCCCCCHHHHHHHHH------hCCC--CCC--ccccc------------eeeeeeeEEc------------C
Q psy549 48 DKRRVVVMGGARVGKSSIISQFL------YDRF--ISR--YKETV------------EELHRGEYEL------------P 93 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~------~~~~--~~~--~~~t~------------~~~~~~~~~~------------~ 93 (253)
....|+|+|.+||||||+++.|. +.+. ... +.+.. ...+...... .
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998 3321 110 00000 0000000000 0
Q ss_pred CCcEEEEEEEeCCCCCCCh-hhHHH---h--cccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCE-EEEEecCCC
Q psy549 94 DGAQLTLDILDTSGAYQFP-AMREL---S--ISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPI-VVVGNKCEL 166 (253)
Q Consensus 94 ~~~~~~~~l~D~~g~~~~~-~~~~~---~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl 166 (253)
....+.+.|+||||..... .+... . +..+|.+++|+|+......... ...+... +|+ ++|+||.|.
T Consensus 180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~---a~~~~~~----~~i~gvVlNK~D~ 252 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQ---AKAFKDK----VDVASVIVTKLDG 252 (504)
T ss_dssp HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHH---HHHHHHH----HCCCCEEEECTTS
T ss_pred HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHH---HHHHHhh----cCceEEEEeCCcc
Confidence 0023578899999976532 22211 1 2268999999999876432221 2222221 475 889999998
Q ss_pred CCcccc-HHHHHHHHH-------------hcCCCcEEEeccCCCCC-HHHHHHHHHHH
Q psy549 167 EFKDVR-REIAETIAL-------------YDWQCGFVECSAKENYN-IVQVFKELLAQ 209 (253)
Q Consensus 167 ~~~~~~-~~~~~~~~~-------------~~~~~~~~~~Sa~~~~~-i~~l~~~l~~~ 209 (253)
...... ......+.. .....+.+.+|+..|.| +.++++++.+.
T Consensus 253 ~~~~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 253 HAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp CCCCTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred ccchHHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 754211 111111110 00011234468888988 99999888765
No 218
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.64 E-value=7.1e-08 Score=81.69 Aligned_cols=97 Identities=16% Similarity=0.109 Sum_probs=70.0
Q ss_pred CCCCChhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHH----HHh
Q psy549 107 GAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETI----ALY 182 (253)
Q Consensus 107 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~----~~~ 182 (253)
.++.|......+++.++++++|+|+.+..+ .|...+.... .+.|+++|+||+|+.......+....+ ..
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l-~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~- 129 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFA-ADNPILLVGNKADLLPRSVKYPKLLRWMRRMAE- 129 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHC-TTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHh-CCCCEEEEEEChhcCCCccCHHHHHHHHHHHHH-
Confidence 478899999999999999999999998763 2333333332 368999999999997654433333222 22
Q ss_pred cCCC---cEEEeccCCCCCHHHHHHHHHHHH
Q psy549 183 DWQC---GFVECSAKENYNIVQVFKELLAQA 210 (253)
Q Consensus 183 ~~~~---~~~~~Sa~~~~~i~~l~~~l~~~~ 210 (253)
..+. .++.+||++|.|++++++.+.+..
T Consensus 130 ~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 130 ELGLCPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp TTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 3343 789999999999999999987654
No 219
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.63 E-value=6e-08 Score=78.60 Aligned_cols=114 Identities=15% Similarity=0.210 Sum_probs=60.6
Q ss_pred cceEEEECCCCCCHHHHHHHHHhCCCCCC---------ccccceeeeeeeEEcCC--CcEEEEEEEeCCCCCCC------
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYDRFISR---------YKETVEELHRGEYELPD--GAQLTLDILDTSGAYQF------ 111 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~~~~~~---------~~~t~~~~~~~~~~~~~--~~~~~~~l~D~~g~~~~------ 111 (253)
.++++|+|++|+|||||++.|++...+.. ...+... ...-.++. +....++++|++|....
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~--~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~ 79 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEI--KAIGHVIEEGGVKMKLTVIDTPGFGDQINNENC 79 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSC--CEEEESCC----CCEEEEECCCC--CCSBCTTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceee--eeeEEEeecCCCcCCceEEechhhhhhcccHHH
Confidence 47899999999999999999997432210 1111110 11111112 22236789999884321
Q ss_pred -hhhHH-------H--------------hcccCCEEEEEEECC-ChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCC
Q psy549 112 -PAMRE-------L--------------SISTADAFVLVYAVD-DASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEF 168 (253)
Q Consensus 112 -~~~~~-------~--------------~~~~~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 168 (253)
..... . .+..+++.+++.|.. .+-.-.+ ...+..+. .. .++++|++|+|...
T Consensus 80 ~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L~---~~-~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 80 WEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHLS---KV-VNIIPVIAKADTMT 154 (270)
T ss_dssp SHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHHH---TT-SEEEEEETTGGGSC
T ss_pred HHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHHH---hc-CcEEEEEeccccCC
Confidence 01100 0 122357888888854 2222122 12222222 23 89999999999876
Q ss_pred c
Q psy549 169 K 169 (253)
Q Consensus 169 ~ 169 (253)
.
T Consensus 155 ~ 155 (270)
T 3sop_A 155 L 155 (270)
T ss_dssp H
T ss_pred H
Confidence 5
No 220
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.61 E-value=7e-07 Score=76.38 Aligned_cols=153 Identities=16% Similarity=0.094 Sum_probs=81.5
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCCCCC------CccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCC----hhhHHH-h
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDRFIS------RYKETVEELHRGEYELPDGAQLTLDILDTSGAYQF----PAMREL-S 118 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~~~~------~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~----~~~~~~-~ 118 (253)
..|+|+|++|+|||||+|.+.+-..+. ....++.. ...+.. ...-.+.+||++|.... ...... .
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~--~~v~q~--~~~~~ltv~D~~g~~~~~~~~~~~L~~~~ 145 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTME--RHPYKH--PNIPNVVFWDLPGIGSTNFPPDTYLEKMK 145 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CC--CEEEEC--SSCTTEEEEECCCGGGSSCCHHHHHHHTT
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeeccee--EEeccc--cccCCeeehHhhcccchHHHHHHHHHHcC
Confidence 489999999999999999999833211 11111111 111111 11114789999985321 111111 2
Q ss_pred cccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCC---------cccc---HHHHHHHH-----H
Q psy549 119 ISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEF---------KDVR---REIAETIA-----L 181 (253)
Q Consensus 119 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~---------~~~~---~~~~~~~~-----~ 181 (253)
+...+..++ ++...... .. ..+...+.. .+.|+++|.||.|+.- .... .+....+. +
T Consensus 146 L~~~~~~~~-lS~G~~~k-qr-v~la~aL~~---~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~ 219 (413)
T 1tq4_A 146 FYEYDFFII-ISATRFKK-ND-IDIAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRE 219 (413)
T ss_dssp GGGCSEEEE-EESSCCCH-HH-HHHHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCccCCeEE-eCCCCccH-HH-HHHHHHHHh---cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 334455554 66652111 11 112222222 3579999999999631 1111 22222332 1
Q ss_pred hc-CCCcEEEecc--CCCCCHHHHHHHHHHHHHH
Q psy549 182 YD-WQCGFVECSA--KENYNIVQVFKELLAQAKV 212 (253)
Q Consensus 182 ~~-~~~~~~~~Sa--~~~~~i~~l~~~l~~~~~~ 212 (253)
.+ ....++.+|+ ..+.|++++.+.+.+.+.+
T Consensus 220 ~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpe 253 (413)
T 1tq4_A 220 NGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI 253 (413)
T ss_dssp TTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred cCCCCCcEEEEecCcCCccCHHHHHHHHHHhCcc
Confidence 11 1246788999 5666799999998877643
No 221
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.58 E-value=1.5e-07 Score=76.65 Aligned_cols=100 Identities=9% Similarity=-0.014 Sum_probs=69.2
Q ss_pred EeCCCCC-CChhhHHHhcccCCEEEEEEECCChhhHHH--HHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHH
Q psy549 103 LDTSGAY-QFPAMRELSISTADAFVLVYAVDDASTWDV--VKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETI 179 (253)
Q Consensus 103 ~D~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 179 (253)
-..||+. +........+..+|+++.|+|+.++.+... +..|+ .++|+++|+||+|+.+....+...+.+
T Consensus 4 ~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~~~~~~~~~~~ 75 (282)
T 1puj_A 4 QWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADAAVTQQWKEHF 75 (282)
T ss_dssp -----CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred cCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCHHHHHHHHHHH
Confidence 3568876 344555667899999999999999877542 33332 468999999999997642222223333
Q ss_pred HHhcCCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy549 180 ALYDWQCGFVECSAKENYNIVQVFKELLAQAKV 212 (253)
Q Consensus 180 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 212 (253)
. ..+.+++.+||+++.|+.++++.+.+.+..
T Consensus 76 ~--~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~ 106 (282)
T 1puj_A 76 E--NQGIRSLSINSVNGQGLNQIVPASKEILQE 106 (282)
T ss_dssp H--TTTCCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred H--hcCCcEEEEECCCcccHHHHHHHHHHHHHH
Confidence 2 345689999999999999999988887754
No 222
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.44 E-value=2.1e-07 Score=75.88 Aligned_cols=58 Identities=21% Similarity=0.311 Sum_probs=36.5
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCCC--CCCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCC
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDRF--ISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQ 110 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~ 110 (253)
...++|+++|.||||||||+|+|.+... +...+.+|.+.. .+.+ +. .+.+|||||...
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~--~~~~-~~---~~~l~DtpG~~~ 177 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQ--WVKV-GK---ELELLDTPGILW 177 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------C--CEEE-TT---TEEEEECCCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeE--EEEe-CC---CEEEEECcCcCC
Confidence 3568999999999999999999998763 444555555443 2333 22 478999999754
No 223
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.31 E-value=4.5e-06 Score=71.80 Aligned_cols=136 Identities=12% Similarity=0.035 Sum_probs=73.6
Q ss_pred CcceEEEECCCCCCHHHHHHHHHh------CCC--C--CCcccc-------ceeeeeeeEEc-C---C------------
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLY------DRF--I--SRYKET-------VEELHRGEYEL-P---D------------ 94 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~------~~~--~--~~~~~t-------~~~~~~~~~~~-~---~------------ 94 (253)
....|+++|++|+||||++..|.. .+. . ..+.+. ........+.. . +
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 457899999999999999998873 111 0 000000 00000000100 0 0
Q ss_pred -CcEEEEEEEeCCCCCCChh-hHHH-----hcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCC
Q psy549 95 -GAQLTLDILDTSGAYQFPA-MREL-----SISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELE 167 (253)
Q Consensus 95 -~~~~~~~l~D~~g~~~~~~-~~~~-----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 167 (253)
...+.+.|+||+|...... +... ....+|.+++|.|+......... ...+.. .-.+..+|+||.|..
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~---a~~f~~---~~~i~gVIlTKlD~~ 252 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQ---ALAFKE---ATPIGSIIVTKLDGS 252 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHH---HHHHHH---SCTTEEEEEECCSSC
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHH---HHHHHh---hCCCeEEEEECCCCc
Confidence 0125778999999654322 1111 23357999999999876443222 222222 123567899999976
Q ss_pred CccccHHHHHHHHHhcCCCcEEEecc
Q psy549 168 FKDVRREIAETIALYDWQCGFVECSA 193 (253)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~Sa 193 (253)
... ..+..+.. ..+.|+..++.
T Consensus 253 ~~g---G~~ls~~~-~~g~PI~fig~ 274 (443)
T 3dm5_A 253 AKG---GGALSAVA-ATGAPIKFIGT 274 (443)
T ss_dssp SSH---HHHHHHHH-TTCCCEEEEEC
T ss_pred ccc---cHHHHHHH-HHCCCEEEEEc
Confidence 532 12223333 45778777765
No 224
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.30 E-value=4.2e-07 Score=73.24 Aligned_cols=56 Identities=27% Similarity=0.375 Sum_probs=36.3
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCCCC--CCccccceeeeeeeEEcCCCcEEEEEEEeCCCCCCC
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDRFI--SRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQF 111 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~ 111 (253)
++|+++|.+|+|||||+|+|.+.... ...+.++... ..+.. +. .+.+|||||....
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~-~~---~~~l~DtpG~~~~ 157 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGI--QWFSL-EN---GVKILDTPGILYK 157 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCS--CEEEC-TT---SCEEESSCEECCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccce--EEEEe-CC---CEEEEECCCcccC
Confidence 69999999999999999999987652 2233333322 22333 22 5789999997653
No 225
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.17 E-value=1.8e-06 Score=77.01 Aligned_cols=64 Identities=23% Similarity=0.260 Sum_probs=41.6
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccceeeeeeeE----EcCCCcEEEEEEEeCCCCCC
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEY----ELPDGAQLTLDILDTSGAYQ 110 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~----~~~~~~~~~~~l~D~~g~~~ 110 (253)
.+.++|+|+|.||+|||||+|+|++....-....++.....+.. .++......+.|+||||...
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 45689999999999999999999987632133333332222221 22122234678999999654
No 226
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.98 E-value=1.9e-05 Score=68.02 Aligned_cols=111 Identities=14% Similarity=0.053 Sum_probs=62.7
Q ss_pred cceEEEECCCCCCHHHHHHHHHhC------CC--CCCccc------------------------cceeee---eeeEEcC
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYD------RF--ISRYKE------------------------TVEELH---RGEYELP 93 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~------~~--~~~~~~------------------------t~~~~~---~~~~~~~ 93 (253)
...|+|+|++|+||||+++.|... .. ...... ++.+.. ...+..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~- 177 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEK- 177 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHT-
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHH-
Confidence 467999999999999999998852 11 000000 111100 000000
Q ss_pred CCcEEEEEEEeCCCCCCChhhHHH------hcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCC-C-EEEEEecCC
Q psy549 94 DGAQLTLDILDTSGAYQFPAMREL------SISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMV-P-IVVVGNKCE 165 (253)
Q Consensus 94 ~~~~~~~~l~D~~g~~~~~~~~~~------~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-p-iilv~nK~D 165 (253)
-..+.+.|+||||.......... .+..+|.+++|.|+...... ......+ . ..+ | ..+|+||.|
T Consensus 178 -~~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~~---~~~~~~~---~-~~~~~i~gvVlnK~D 249 (432)
T 2v3c_C 178 -FKKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQA---GIQAKAF---K-EAVGEIGSIIVTKLD 249 (432)
T ss_dssp -TSSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGGH---HHHHHHH---H-TTSCSCEEEEEECSS
T ss_pred -hhCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHHH---HHHHHHH---h-hcccCCeEEEEeCCC
Confidence 12356789999997654322211 12258999999998765421 1111111 1 234 5 889999999
Q ss_pred CCC
Q psy549 166 LEF 168 (253)
Q Consensus 166 l~~ 168 (253)
...
T Consensus 250 ~~~ 252 (432)
T 2v3c_C 250 GSA 252 (432)
T ss_dssp SCS
T ss_pred Ccc
Confidence 754
No 227
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.92 E-value=1.5e-05 Score=68.51 Aligned_cols=90 Identities=14% Similarity=0.021 Sum_probs=50.1
Q ss_pred EEEEEEeCCCCCC--Ch-hhHH---H--hcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCc
Q psy549 98 LTLDILDTSGAYQ--FP-AMRE---L--SISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK 169 (253)
Q Consensus 98 ~~~~l~D~~g~~~--~~-~~~~---~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 169 (253)
+.+.|+||||... .. .+.. . .....+.+++|.|+........+ ...+.... .+..+|+||.|....
T Consensus 180 ~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~---a~~f~~~~---~~~gVIlTKlD~~a~ 253 (433)
T 3kl4_A 180 MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDL---ASRFHQAS---PIGSVIITKMDGTAK 253 (433)
T ss_dssp CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHH---HHHHHHHC---SSEEEEEECGGGCSC
T ss_pred CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHH---HHHHhccc---CCcEEEEeccccccc
Confidence 5677999999644 11 1111 1 12246899999999876433222 22233221 367899999997643
Q ss_pred cccHHHHHHHHHhcCCCcEEEeccCCCCCH
Q psy549 170 DVRREIAETIALYDWQCGFVECSAKENYNI 199 (253)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 199 (253)
. ..+..+.. ..+.|+..++. |.++
T Consensus 254 ~---G~als~~~-~~g~Pi~fig~--Ge~v 277 (433)
T 3kl4_A 254 G---GGALSAVV-ATGATIKFIGT--GEKI 277 (433)
T ss_dssp H---HHHHHHHH-HHTCEEEEEEC--CSSS
T ss_pred c---hHHHHHHH-HHCCCEEEEEC--CCCh
Confidence 1 12222222 24678777765 5443
No 228
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.91 E-value=7.9e-06 Score=65.75 Aligned_cols=91 Identities=11% Similarity=0.013 Sum_probs=61.6
Q ss_pred CCCCC-ChhhHHHhcccCCEEEEEEECCChhhHHH--HHHHHHHHHHhcCCCCCEEEEEecCCCCCccccHHHHHHHHHh
Q psy549 106 SGAYQ-FPAMRELSISTADAFVLVYAVDDASTWDV--VKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIALY 182 (253)
Q Consensus 106 ~g~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 182 (253)
||+.. -.......+.++|+++.|+|+.++.+... +. ++ ++|.++|+||+|+.+........+.+..
T Consensus 5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll---------~k~~iivlNK~DL~~~~~~~~~~~~~~~- 73 (262)
T 3cnl_A 5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS---------RKETIILLNKVDIADEKTTKKWVEFFKK- 73 (262)
T ss_dssp ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT---------TSEEEEEEECGGGSCHHHHHHHHHHHHH-
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc---------CCCcEEEEECccCCCHHHHHHHHHHHHH-
Confidence 66553 23455567889999999999998866542 12 11 5899999999999864332333333433
Q ss_pred cCCCcEEEeccCCCCCHHHHHHHHHHH
Q psy549 183 DWQCGFVECSAKENYNIVQVFKELLAQ 209 (253)
Q Consensus 183 ~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 209 (253)
.+.++ .+|++++.|+.++++.+...
T Consensus 74 -~g~~v-~iSa~~~~gi~~L~~~l~~~ 98 (262)
T 3cnl_A 74 -QGKRV-ITTHKGEPRKVLLKKLSFDR 98 (262)
T ss_dssp -TTCCE-EECCTTSCHHHHHHHHCCCT
T ss_pred -cCCeE-EEECCCCcCHHHHHHHHHHh
Confidence 35677 99999999999998876543
No 229
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.90 E-value=5.8e-05 Score=61.82 Aligned_cols=91 Identities=16% Similarity=0.044 Sum_probs=53.4
Q ss_pred EEEEEEeCCCCCC--Chh-hHH-----HhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCC-EEEEEecCCCCC
Q psy549 98 LTLDILDTSGAYQ--FPA-MRE-----LSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVP-IVVVGNKCELEF 168 (253)
Q Consensus 98 ~~~~l~D~~g~~~--~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 168 (253)
+.+.|+||||... ... +.. .....+|.+++|.|+...... ......+.. ..| ..+|+||.|...
T Consensus 181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~---~~~~~~~~~----~~~i~gvVlnk~D~~~ 253 (297)
T 1j8m_F 181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKA---YDLASKFNQ----ASKIGTIIITKMDGTA 253 (297)
T ss_dssp CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH---HHHHHHHHH----TCTTEEEEEECGGGCT
T ss_pred CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHHH---HHHHHHHHh----hCCCCEEEEeCCCCCc
Confidence 5678999999876 422 221 124468999999998754321 122222222 245 778899999753
Q ss_pred ccccHHHHHHHHHhcCCCcEEEeccCCCCCHHH
Q psy549 169 KDVRREIAETIALYDWQCGFVECSAKENYNIVQ 201 (253)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 201 (253)
. ...+..+.. ..+.|+..++ .|.++++
T Consensus 254 ~---~g~~~~~~~-~~~~pi~~i~--~Ge~v~d 280 (297)
T 1j8m_F 254 K---GGGALSAVA-ATGATIKFIG--TGEKIDE 280 (297)
T ss_dssp T---HHHHHHHHH-TTTCCEEEEE--CSSSTTC
T ss_pred c---hHHHHHHHH-HHCcCEEEEe--CCCChhh
Confidence 2 222333444 5667877766 4555544
No 230
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.83 E-value=6.2e-05 Score=63.07 Aligned_cols=84 Identities=15% Similarity=0.114 Sum_probs=56.5
Q ss_pred hcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccc---cHHHHHHHHHhcCCCcEEEeccC
Q psy549 118 SISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDV---RREIAETIALYDWQCGFVECSAK 194 (253)
Q Consensus 118 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~Sa~ 194 (253)
...++|.+++|.+..-..+...+..++..... .++|+++|+||+|+.+... .......+. ..+.+++.+|+.
T Consensus 127 i~anvD~v~iv~a~~P~~~~~~i~r~L~~a~~---~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~--~~G~~v~~~Sa~ 201 (358)
T 2rcn_A 127 IAANIDQIVIVSAILPELSLNIIDRYLVGCET---LQVEPLIVLNKIDLLDDEGMDFVNEQMDIYR--NIGYRVLMVSSH 201 (358)
T ss_dssp EEECCCEEEEEEESTTTCCHHHHHHHHHHHHH---HTCEEEEEEECGGGCCHHHHHHHHHHHHHHH--TTTCCEEECBTT
T ss_pred HHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCchhHHHHHHHHHHHH--hCCCcEEEEecC
Confidence 46889999999776533334445555544333 3478899999999986532 112223332 456789999999
Q ss_pred CCCCHHHHHHHH
Q psy549 195 ENYNIVQVFKEL 206 (253)
Q Consensus 195 ~~~~i~~l~~~l 206 (253)
++.|++++...+
T Consensus 202 ~~~gl~~L~~~~ 213 (358)
T 2rcn_A 202 TQDGLKPLEEAL 213 (358)
T ss_dssp TTBTHHHHHHHH
T ss_pred CCcCHHHHHHhc
Confidence 999999887643
No 231
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.81 E-value=1e-05 Score=66.52 Aligned_cols=87 Identities=14% Similarity=0.096 Sum_probs=58.1
Q ss_pred hhHHHhcccCCEEEEEEECCChhh-HHHHHHHHHHHHHhcCCCCCEEEEEecCCCCCccc----cHHHHHHHHHhcCCCc
Q psy549 113 AMRELSISTADAFVLVYAVDDAST-WDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDV----RREIAETIALYDWQCG 187 (253)
Q Consensus 113 ~~~~~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~ 187 (253)
.+....+.++|.+++|+|+.++.. ...+.+++.... ..++|+++|+||+|+.+... .....+.+.. .+.+
T Consensus 78 ~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~---~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~--~g~~ 152 (307)
T 1t9h_A 78 ELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE---ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRN--IGYD 152 (307)
T ss_dssp EETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHH---TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHH--HTCC
T ss_pred hhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHH---HCCCCEEEEEECCccCchhhhHHHHHHHHHHHHh--CCCe
Confidence 334457899999999999987653 333444443322 25689999999999987532 2333333332 3568
Q ss_pred EEEeccCCCCCHHHHHH
Q psy549 188 FVECSAKENYNIVQVFK 204 (253)
Q Consensus 188 ~~~~Sa~~~~~i~~l~~ 204 (253)
++.+|+.++.|++++++
T Consensus 153 v~~~sa~~~~g~~~L~~ 169 (307)
T 1t9h_A 153 VYLTSSKDQDSLADIIP 169 (307)
T ss_dssp EEECCHHHHTTCTTTGG
T ss_pred EEEEecCCCCCHHHHHh
Confidence 99999998888765543
No 232
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.74 E-value=6.3e-05 Score=67.72 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=21.1
Q ss_pred eEEEECCCCCCHHHHHHHHHhCC
Q psy549 51 RVVVMGGARVGKSSIISQFLYDR 73 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~~~ 73 (253)
.|+|+|++|||||||++.+.+-.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 49999999999999999999864
No 233
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.73 E-value=3.6e-06 Score=73.56 Aligned_cols=100 Identities=11% Similarity=0.029 Sum_probs=57.2
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCCCCCCccccce-eeeeeeEEcCCCcEEEEEEEeCCCCC--CChhhH--------
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAY--QFPAMR-------- 115 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~l~D~~g~~--~~~~~~-------- 115 (253)
.....|+++|.+|+||||+.++|........ ..+.. +........ .+......+||..|.+ +....+
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~-~~t~~~~~d~~r~~~-~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~ 114 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIG-VPTREFNVGQYRRDM-VKTYKSFEFFLPDNEEGLKIRKQCALAALNDV 114 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTT-CCEEEEEHHHHHHHH-HCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhccC-CCceEEecchhhhhh-ccCCCcccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 4467999999999999999999875421110 01110 000000011 1111234678888862 223332
Q ss_pred HHhcccCCEEEEEEECCChhhHHHHHHHHHHHHH
Q psy549 116 ELSISTADAFVLVYAVDDASTWDVVKDLREQIVN 149 (253)
Q Consensus 116 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~ 149 (253)
..++..+++.++|+|.++. .+.....|+..+..
T Consensus 115 ~~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~ 147 (469)
T 1bif_A 115 RKFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQ 147 (469)
T ss_dssp HHHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHh
Confidence 3355567888999999987 45556667665554
No 234
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.47 E-value=0.0012 Score=56.89 Aligned_cols=64 Identities=28% Similarity=0.429 Sum_probs=42.1
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhC------------------CCCCCccccceeeeeee--------EEcCCCcEEEE
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYD------------------RFISRYKETVEELHRGE--------YELPDGAQLTL 100 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~------------------~~~~~~~~t~~~~~~~~--------~~~~~~~~~~~ 100 (253)
.+..-|+|+|++++|||+|+|+|++. .+. ..+++.....+. ...+++..+.+
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~--~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~v 142 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFS--WRGGSERETTGIQIWSEIFLINKPDGKKVAV 142 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSC--SCCSSCCCCCEEEEESSCEEEECSSSCEEEE
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceec--CCCCCCCceeEEEEecCccccccCCCCcceE
Confidence 35567899999999999999999863 121 111333222222 22335667789
Q ss_pred EEEeCCCCCCCh
Q psy549 101 DILDTSGAYQFP 112 (253)
Q Consensus 101 ~l~D~~g~~~~~ 112 (253)
.++||+|.....
T Consensus 143 vllDTeG~~~~~ 154 (447)
T 3q5d_A 143 LLMDTQGTFDSQ 154 (447)
T ss_dssp EEEEEECCCSSH
T ss_pred EEEcCCcccccc
Confidence 999999976554
No 235
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.27 E-value=0.00017 Score=54.45 Aligned_cols=23 Identities=17% Similarity=0.556 Sum_probs=20.5
Q ss_pred ceEEEECCCCCCHHHHHHHHHhC
Q psy549 50 RRVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
.+++|+|++|+|||||++.+.+.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999998864
No 236
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.14 E-value=0.00033 Score=53.62 Aligned_cols=25 Identities=28% Similarity=0.591 Sum_probs=21.5
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhC
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
..--|+|+|++|||||||++.|...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 3456899999999999999999864
No 237
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.13 E-value=0.00026 Score=53.33 Aligned_cols=23 Identities=22% Similarity=0.524 Sum_probs=20.6
Q ss_pred ceEEEECCCCCCHHHHHHHHHhC
Q psy549 50 RRVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
-.|+|+|++|||||||++.|.+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999999863
No 238
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.12 E-value=0.00031 Score=53.16 Aligned_cols=26 Identities=19% Similarity=0.187 Sum_probs=22.4
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhC
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
...-.|+|+|++|||||||++.+.+.
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 34457999999999999999999875
No 239
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.09 E-value=0.00029 Score=54.01 Aligned_cols=22 Identities=32% Similarity=0.594 Sum_probs=20.3
Q ss_pred ceEEEECCCCCCHHHHHHHHHh
Q psy549 50 RRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
-.++|+|++|||||||++.+.+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
No 240
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.04 E-value=0.0021 Score=48.98 Aligned_cols=79 Identities=9% Similarity=0.066 Sum_probs=52.4
Q ss_pred EEEEEEeCCCCCCChhhHHHhcccCCEEEEEEECCChhhHHHHHHHHHHHHHhc--CCCCCEEEEEecCCCCCccccHHH
Q psy549 98 LTLDILDTSGAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKR--GLMVPIVVVGNKCELEFKDVRREI 175 (253)
Q Consensus 98 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~ 175 (253)
+.+.++|+|+.. .......+..+|.++++...+... ..+..++..+.... .+..++.+|+|++|... ....+.
T Consensus 76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~-~~~~~~ 150 (206)
T 4dzz_A 76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMA-TMLNVL 150 (206)
T ss_dssp SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTE-EEEHHH
T ss_pred CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCc-hHHHHH
Confidence 577899999865 345556677899999999886554 55666666655432 34567899999998543 233334
Q ss_pred HHHHHH
Q psy549 176 AETIAL 181 (253)
Q Consensus 176 ~~~~~~ 181 (253)
.+.+..
T Consensus 151 ~~~l~~ 156 (206)
T 4dzz_A 151 KESIKD 156 (206)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
No 241
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.00 E-value=0.00045 Score=53.22 Aligned_cols=26 Identities=31% Similarity=0.364 Sum_probs=21.6
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhC
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
...--++|+|++|||||||++.+.+-
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34456899999999999999998874
No 242
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.98 E-value=0.00033 Score=57.49 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=21.0
Q ss_pred cceEEEECCCCCCHHHHHHHHHhCC
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYDR 73 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~~ 73 (253)
.-.++|+|++|||||||+|.|.+..
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC--
T ss_pred CCEEEEECCCCCCHHHHHHHhcccc
Confidence 3589999999999999999998754
No 243
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.98 E-value=0.00043 Score=52.98 Aligned_cols=23 Identities=13% Similarity=0.328 Sum_probs=20.7
Q ss_pred ceEEEECCCCCCHHHHHHHHHhC
Q psy549 50 RRVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
--|+|+|++|||||||++.|.+.
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 46899999999999999999874
No 244
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.97 E-value=0.00043 Score=52.39 Aligned_cols=22 Identities=23% Similarity=0.570 Sum_probs=19.6
Q ss_pred eEEEECCCCCCHHHHHHHHHhC
Q psy549 51 RVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
-++|+|++|||||||++.|.+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4789999999999999999863
No 245
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.91 E-value=0.0031 Score=54.27 Aligned_cols=65 Identities=15% Similarity=0.125 Sum_probs=38.8
Q ss_pred EEEEEEeCCCCCCCh-hhHHH-----hcccCCEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCC-EEEEEecCCCCCc
Q psy549 98 LTLDILDTSGAYQFP-AMREL-----SISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVP-IVVVGNKCELEFK 169 (253)
Q Consensus 98 ~~~~l~D~~g~~~~~-~~~~~-----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~ 169 (253)
+.+.|+||||..... .+... .+...+.+++|.|+........ ....+.. .++ ..+|+||.|....
T Consensus 184 ~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~~---~~~~f~~----~l~i~gvVlnK~D~~~~ 255 (433)
T 2xxa_A 184 YDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAAN---TAKAFNE----ALPLTGVVLTKVDGDAR 255 (433)
T ss_dssp CSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHHH---HHHHHHH----HSCCCCEEEECTTSSSC
T ss_pred CCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHHH---HHHHHhc----cCCCeEEEEecCCCCcc
Confidence 567899999976542 22221 2346889999999876543222 2222222 134 3578999997543
No 246
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.89 E-value=0.00056 Score=52.75 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=21.9
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhC
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
....|+|+|++|||||||++.+.+-
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999988763
No 247
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.89 E-value=0.00054 Score=53.33 Aligned_cols=25 Identities=28% Similarity=0.472 Sum_probs=21.6
Q ss_pred cceEEEECCCCCCHHHHHHHHHhCC
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYDR 73 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~~ 73 (253)
.-.++|+|++|||||||++.+.+-.
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4568999999999999999998743
No 248
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.89 E-value=0.00056 Score=53.36 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=22.2
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCC
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDR 73 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~ 73 (253)
..--++|+|++|||||||++.+.+..
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 44578999999999999999998743
No 249
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.87 E-value=0.00047 Score=51.50 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=18.2
Q ss_pred ceEEEECCCCCCHHHHHHHHH
Q psy549 50 RRVVVMGGARVGKSSIISQFL 70 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~ 70 (253)
--++++|++|||||||++.+.
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 357899999999999999754
No 250
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.80 E-value=0.00076 Score=49.76 Aligned_cols=24 Identities=21% Similarity=0.249 Sum_probs=21.3
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCC
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDR 73 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~ 73 (253)
-.++++|+.|+|||||++.+.+..
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 468999999999999999998754
No 251
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.78 E-value=0.00079 Score=51.07 Aligned_cols=21 Identities=24% Similarity=0.612 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHHhC
Q psy549 52 VVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 52 I~iiG~~~~GKSsLi~~l~~~ 72 (253)
|+|+||+|||||||+++|+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 889999999999999999854
No 252
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.77 E-value=0.0007 Score=53.37 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=20.8
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCC
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDR 73 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~ 73 (253)
=.++|+|++|||||||++.+.+-.
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 468999999999999999887644
No 253
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.74 E-value=0.0011 Score=51.06 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=22.1
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCC
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDR 73 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~ 73 (253)
..--|+|+|++|||||||++.|....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 34568999999999999999998753
No 254
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.72 E-value=0.00093 Score=49.61 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=20.5
Q ss_pred ceEEEECCCCCCHHHHHHHHHhC
Q psy549 50 RRVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
..|+|+|++||||||+++.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999998763
No 255
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.71 E-value=0.0013 Score=51.11 Aligned_cols=22 Identities=23% Similarity=0.517 Sum_probs=18.5
Q ss_pred ceEEEECCCCCCHHHHHHHHHh
Q psy549 50 RRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
--|+|+|+|||||+|....|..
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3466789999999999998874
No 256
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.70 E-value=0.00096 Score=51.34 Aligned_cols=24 Identities=17% Similarity=0.319 Sum_probs=21.2
Q ss_pred CcceEEEECCCCCCHHHHHHHHHh
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
....|+|+|++|||||||++.|.+
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999876
No 257
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.68 E-value=0.0012 Score=50.45 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=21.8
Q ss_pred cceEEEECCCCCCHHHHHHHHHhCC
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYDR 73 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~~ 73 (253)
...|+|+|++||||||+++.|.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3579999999999999999988754
No 258
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.68 E-value=0.00082 Score=52.56 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=20.7
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCC
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDR 73 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~ 73 (253)
=.++|+|++|||||||++.+.+-.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368899999999999999887653
No 259
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.67 E-value=0.0014 Score=49.99 Aligned_cols=25 Identities=20% Similarity=0.332 Sum_probs=21.6
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHh
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
.....|+|+|.+||||||+.+.|..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3446899999999999999999875
No 260
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.67 E-value=0.001 Score=52.64 Aligned_cols=24 Identities=21% Similarity=0.196 Sum_probs=20.9
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCC
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDR 73 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~ 73 (253)
=.++|+|++|+|||||++.+.+-.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 368899999999999999988753
No 261
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.67 E-value=0.0011 Score=50.52 Aligned_cols=21 Identities=29% Similarity=0.426 Sum_probs=19.5
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q psy549 51 RVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~ 71 (253)
.|+|+|++|+|||||++.+.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 589999999999999999886
No 262
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.66 E-value=0.0011 Score=50.13 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=19.3
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q psy549 51 RVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~ 71 (253)
.|+|+|++|||||||++.+.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 578999999999999999975
No 263
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.65 E-value=0.0013 Score=50.46 Aligned_cols=25 Identities=32% Similarity=0.494 Sum_probs=21.6
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhC
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
....|+|+|++|||||||++.|...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4467999999999999999998763
No 264
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.64 E-value=0.0011 Score=55.61 Aligned_cols=25 Identities=32% Similarity=0.399 Sum_probs=21.9
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCCC
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDRF 74 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~~ 74 (253)
-.++|+|++|||||||+|.|.+...
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CEEEEECCCCccHHHHHHHHhcccc
Confidence 3789999999999999999997543
No 265
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.64 E-value=0.0017 Score=48.37 Aligned_cols=23 Identities=30% Similarity=0.372 Sum_probs=20.3
Q ss_pred cceEEEECCCCCCHHHHHHHHHh
Q psy549 49 KRRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
...|+|+|++||||||+++.|.+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999998875
No 266
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.63 E-value=0.0012 Score=48.86 Aligned_cols=20 Identities=20% Similarity=0.375 Sum_probs=18.6
Q ss_pred ceEEEECCCCCCHHHHHHHH
Q psy549 50 RRVVVMGGARVGKSSIISQF 69 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l 69 (253)
..|+|+|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 267
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.62 E-value=0.0012 Score=50.49 Aligned_cols=24 Identities=38% Similarity=0.452 Sum_probs=20.9
Q ss_pred CcceEEEECCCCCCHHHHHHHHHh
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
....|+|+|++|||||||++.|.+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999875
No 268
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.62 E-value=0.0011 Score=53.25 Aligned_cols=24 Identities=17% Similarity=0.358 Sum_probs=20.8
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCC
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDR 73 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~ 73 (253)
=.++|+|++|||||||++.+.+-.
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999988753
No 269
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.62 E-value=0.0011 Score=51.47 Aligned_cols=24 Identities=17% Similarity=0.218 Sum_probs=20.8
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCC
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDR 73 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~ 73 (253)
=.++|+|++|+|||||++.+.+-.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368899999999999999988753
No 270
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.61 E-value=0.0011 Score=53.62 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=20.8
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCC
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDR 73 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~ 73 (253)
=.++|+|++|||||||++.+.+-.
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999888743
No 271
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.61 E-value=0.0015 Score=50.79 Aligned_cols=23 Identities=13% Similarity=0.235 Sum_probs=20.6
Q ss_pred cceEEEECCCCCCHHHHHHHHHh
Q psy549 49 KRRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
...|+|+|++||||||+++.|..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999998875
No 272
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.60 E-value=0.0012 Score=52.12 Aligned_cols=24 Identities=38% Similarity=0.515 Sum_probs=20.9
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCC
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDR 73 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~ 73 (253)
=.++|+|++|+|||||++.+.+-.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999987653
No 273
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.59 E-value=0.0014 Score=51.86 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=20.3
Q ss_pred cceEEEECCCCCCHHHHHHHHH
Q psy549 49 KRRVVVMGGARVGKSSIISQFL 70 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~ 70 (253)
...|+|+|++|||||||++.+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3589999999999999999988
No 274
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.59 E-value=0.0013 Score=48.57 Aligned_cols=21 Identities=14% Similarity=0.172 Sum_probs=19.3
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q psy549 51 RVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~ 71 (253)
.|+|+|++||||||+++.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999875
No 275
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.57 E-value=0.0021 Score=49.08 Aligned_cols=24 Identities=21% Similarity=0.433 Sum_probs=20.9
Q ss_pred CcceEEEECCCCCCHHHHHHHHHh
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
....|+|.|.+||||||+.+.|..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998874
No 276
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.57 E-value=0.0019 Score=49.58 Aligned_cols=27 Identities=11% Similarity=0.164 Sum_probs=22.9
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhC
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
......|+|+|++|+|||||++.|...
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 344578999999999999999998864
No 277
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.56 E-value=0.0014 Score=48.91 Aligned_cols=22 Identities=23% Similarity=0.465 Sum_probs=20.1
Q ss_pred ceEEEECCCCCCHHHHHHHHHh
Q psy549 50 RRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
..|+|.|.+||||||+++.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999986
No 278
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.56 E-value=0.0013 Score=52.07 Aligned_cols=25 Identities=24% Similarity=0.173 Sum_probs=21.5
Q ss_pred cceEEEECCCCCCHHHHHHHHHhCC
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYDR 73 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~~ 73 (253)
.=.++|+|++|+|||||++.+.+-.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3478999999999999999988743
No 279
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.56 E-value=0.0013 Score=52.26 Aligned_cols=24 Identities=17% Similarity=0.184 Sum_probs=21.0
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCC
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDR 73 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~ 73 (253)
=.++|+|++|+|||||++.+.+-.
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999988754
No 280
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.56 E-value=0.0012 Score=53.13 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=20.8
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCC
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDR 73 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~ 73 (253)
=.++|+|++|||||||++.+.+-.
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 467899999999999999988743
No 281
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.56 E-value=0.0012 Score=52.77 Aligned_cols=24 Identities=21% Similarity=0.231 Sum_probs=21.0
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCC
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDR 73 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~ 73 (253)
=.++|+|++|+|||||++.+.+-.
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999988754
No 282
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.55 E-value=0.0013 Score=52.85 Aligned_cols=24 Identities=29% Similarity=0.353 Sum_probs=20.7
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCC
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDR 73 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~ 73 (253)
=.++|+|++|+|||||++.+.+-.
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEcCCCCcHHHHHHHHHcCC
Confidence 367899999999999999988753
No 283
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.55 E-value=0.0014 Score=51.47 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=21.0
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCC
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDR 73 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~ 73 (253)
=.++|+|+.|+|||||++.+.+-.
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999988754
No 284
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.54 E-value=0.0014 Score=53.63 Aligned_cols=25 Identities=20% Similarity=0.313 Sum_probs=21.6
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhC
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
..=.++|+|++|+|||||++.|.+-
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhh
Confidence 3457999999999999999998863
No 285
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.52 E-value=0.0014 Score=52.11 Aligned_cols=23 Identities=26% Similarity=0.261 Sum_probs=20.7
Q ss_pred ceEEEECCCCCCHHHHHHHHHhC
Q psy549 50 RRVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
=.++|+|++|+|||||++.+.+-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999998885
No 286
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.52 E-value=0.0013 Score=51.96 Aligned_cols=24 Identities=21% Similarity=0.272 Sum_probs=20.9
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCC
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDR 73 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~ 73 (253)
=.++|+|++|+|||||++.+.+-.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999988753
No 287
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.52 E-value=0.002 Score=48.24 Aligned_cols=24 Identities=17% Similarity=0.271 Sum_probs=20.8
Q ss_pred CcceEEEECCCCCCHHHHHHHHHh
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
....|+|+|.+|+||||+++.|..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHH
Confidence 346799999999999999999874
No 288
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.52 E-value=0.0016 Score=50.32 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=19.6
Q ss_pred ceEEEECCCCCCHHHHHHHHHh
Q psy549 50 RRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
++|+|+|++||||||+++.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999863
No 289
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.51 E-value=0.0014 Score=49.17 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=20.9
Q ss_pred cceEEEECCCCCCHHHHHHHHHhC
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
.-.++|+|++|+|||||++.+.+.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999998764
No 290
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.50 E-value=0.0015 Score=50.98 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=20.7
Q ss_pred CcceEEEECCCCCCHHHHHHHHHh
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
....|+|+|.+||||||+++.|..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999873
No 291
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.50 E-value=0.0019 Score=49.40 Aligned_cols=23 Identities=35% Similarity=0.359 Sum_probs=20.5
Q ss_pred cceEEEECCCCCCHHHHHHHHHh
Q psy549 49 KRRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
...|+|+|.+||||||+++.|..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999875
No 292
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.50 E-value=0.0014 Score=52.33 Aligned_cols=24 Identities=13% Similarity=0.091 Sum_probs=21.0
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCC
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDR 73 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~ 73 (253)
=.++|+|++|+|||||++.+.+-.
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999988753
No 293
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.49 E-value=0.0016 Score=50.23 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=19.7
Q ss_pred ceEEEECCCCCCHHHHHHHHHh
Q psy549 50 RRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
++|+|+|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999864
No 294
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.49 E-value=0.0015 Score=52.44 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=20.7
Q ss_pred ceEEEECCCCCCHHHHHHHHHhC
Q psy549 50 RRVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
=.++|+|++|+|||||++.+.+-
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999998885
No 295
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.49 E-value=0.0016 Score=51.84 Aligned_cols=24 Identities=17% Similarity=0.278 Sum_probs=20.8
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCC
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDR 73 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~ 73 (253)
=.++|+|++|+|||||++.+.+-.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 368999999999999999988753
No 296
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.48 E-value=0.0015 Score=52.25 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=21.1
Q ss_pred cceEEEECCCCCCHHHHHHHHHhC
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
.=.++|+|++|+|||||++.+.+-
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 347899999999999999998874
No 297
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.48 E-value=0.0017 Score=48.62 Aligned_cols=24 Identities=8% Similarity=0.198 Sum_probs=21.1
Q ss_pred cceEEEECCCCCCHHHHHHHHHhC
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
...++|+|++|+|||||+++++..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 357899999999999999999864
No 298
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.47 E-value=0.0016 Score=49.75 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=20.2
Q ss_pred ceEEEECCCCCCHHHHHHHHHh
Q psy549 50 RRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
.+|+|+|.+||||||+++.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999876
No 299
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.47 E-value=0.0016 Score=52.71 Aligned_cols=24 Identities=13% Similarity=0.242 Sum_probs=20.8
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCC
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDR 73 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~ 73 (253)
=.++|+|++|+|||||++.+.+-.
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 367899999999999999988754
No 300
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.47 E-value=0.0012 Score=50.98 Aligned_cols=22 Identities=23% Similarity=0.170 Sum_probs=20.2
Q ss_pred eEEEECCCCCCHHHHHHHHHhC
Q psy549 51 RVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
.++|+|++|+|||||++.+.+-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999875
No 301
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.46 E-value=0.0016 Score=52.16 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=21.4
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhC
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
..=.|+|+|++|||||||++.+.+-
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHh
Confidence 3347999999999999999998863
No 302
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.45 E-value=0.0016 Score=52.42 Aligned_cols=24 Identities=17% Similarity=0.216 Sum_probs=20.9
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCC
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDR 73 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~ 73 (253)
=.++|+|++|+|||||++.+.+-.
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999988754
No 303
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.45 E-value=0.002 Score=52.98 Aligned_cols=25 Identities=24% Similarity=0.153 Sum_probs=22.2
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHh
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
....-|+|+|++|||||||++.+.+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 4567899999999999999999886
No 304
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.44 E-value=0.0021 Score=50.81 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=21.4
Q ss_pred CcceEEEECCCCCCHHHHHHHHHh
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
....|+|+|++|||||||++.|.+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 446799999999999999999876
No 305
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.44 E-value=0.002 Score=49.23 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=20.4
Q ss_pred cceEEEECCCCCCHHHHHHHHHh
Q psy549 49 KRRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
.-.|+|+|++||||||+.+.|..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 35899999999999999999874
No 306
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.42 E-value=0.0016 Score=51.84 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=20.9
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCC
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDR 73 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~ 73 (253)
=.++|+|++|+|||||++.+.+-.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999988754
No 307
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.41 E-value=0.0025 Score=47.95 Aligned_cols=24 Identities=17% Similarity=0.331 Sum_probs=21.3
Q ss_pred cceEEEECCCCCCHHHHHHHHHhC
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
...|+|+|.+||||||+.+.|...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999998764
No 308
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.39 E-value=0.0017 Score=52.11 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=20.8
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCC
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDR 73 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~ 73 (253)
=.++|+|++|+|||||++.+.+-.
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 468999999999999999988643
No 309
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.38 E-value=0.0019 Score=50.82 Aligned_cols=23 Identities=30% Similarity=0.681 Sum_probs=20.1
Q ss_pred CcceEEEECCCCCCHHHHHHHHH
Q psy549 48 DKRRVVVMGGARVGKSSIISQFL 70 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~ 70 (253)
..=-++|+|++|+|||||++.+.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHH
Confidence 34568999999999999999887
No 310
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.38 E-value=0.0024 Score=48.15 Aligned_cols=23 Identities=17% Similarity=0.338 Sum_probs=20.5
Q ss_pred cceEEEECCCCCCHHHHHHHHHh
Q psy549 49 KRRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
...|+|+|.+||||||+++.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999875
No 311
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.38 E-value=0.0021 Score=49.18 Aligned_cols=22 Identities=32% Similarity=0.391 Sum_probs=20.2
Q ss_pred ceEEEECCCCCCHHHHHHHHHh
Q psy549 50 RRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
+.|+|+|++||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999976
No 312
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.38 E-value=0.0024 Score=48.71 Aligned_cols=25 Identities=20% Similarity=0.129 Sum_probs=21.3
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhC
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
....|+|+|++|+|||||++.|.+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999999999988753
No 313
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.38 E-value=0.0022 Score=48.76 Aligned_cols=21 Identities=24% Similarity=0.487 Sum_probs=19.4
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q psy549 51 RVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~ 71 (253)
.|+|+|.+||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999875
No 314
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.38 E-value=0.002 Score=48.04 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=20.4
Q ss_pred ceEEEECCCCCCHHHHHHHHHhC
Q psy549 50 RRVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
..|+|.|.+||||||+.+.|...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999998863
No 315
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.37 E-value=0.0022 Score=49.43 Aligned_cols=22 Identities=18% Similarity=0.270 Sum_probs=19.6
Q ss_pred ceEEEECCCCCCHHHHHHHHHh
Q psy549 50 RRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
++|+|+|+|||||+|...+|..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998874
No 316
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.36 E-value=0.0024 Score=47.97 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=20.5
Q ss_pred cceEEEECCCCCCHHHHHHHHHh
Q psy549 49 KRRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
...|+|+|.+||||||+.+.|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999874
No 317
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.36 E-value=0.0017 Score=53.13 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=21.3
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCC
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDR 73 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~ 73 (253)
-.++++|++|||||||+|.+.+..
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CeEEEECCCCCcHHHHHHHhcccc
Confidence 468999999999999999998754
No 318
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.36 E-value=0.0023 Score=49.21 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=21.2
Q ss_pred CcceEEEECCCCCCHHHHHHHHHh
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
....|+|.|.+||||||+++.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999874
No 319
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.35 E-value=0.0025 Score=49.44 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=20.6
Q ss_pred cceEEEECCCCCCHHHHHHHHHh
Q psy549 49 KRRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
...|+|+|.+||||||+.+.|..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998864
No 320
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.35 E-value=0.0024 Score=48.03 Aligned_cols=22 Identities=27% Similarity=0.285 Sum_probs=19.9
Q ss_pred ceEEEECCCCCCHHHHHHHHHh
Q psy549 50 RRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
..|+|.|.+||||||+++.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999864
No 321
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.34 E-value=0.0019 Score=50.15 Aligned_cols=26 Identities=15% Similarity=0.144 Sum_probs=21.9
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCC
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDR 73 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~ 73 (253)
..=-++|+|++|+|||||++.+.+..
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34478999999999999999998743
No 322
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.33 E-value=0.0012 Score=51.65 Aligned_cols=24 Identities=17% Similarity=0.297 Sum_probs=16.0
Q ss_pred cceEEEECCCCCCHHHHHHHHH-hC
Q psy549 49 KRRVVVMGGARVGKSSIISQFL-YD 72 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~-~~ 72 (253)
.--|+|+|++|||||||++.|. +.
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC--
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcC
Confidence 3468999999999999999998 54
No 323
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.33 E-value=0.0027 Score=50.16 Aligned_cols=24 Identities=17% Similarity=0.255 Sum_probs=21.4
Q ss_pred CcceEEEECCCCCCHHHHHHHHHh
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
...+|+|+|++||||||+++.|..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999874
No 324
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.33 E-value=0.0022 Score=51.45 Aligned_cols=24 Identities=17% Similarity=0.347 Sum_probs=21.4
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCC
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDR 73 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~ 73 (253)
=.++|+|++|+|||||++.+.+-.
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999988764
No 325
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.33 E-value=0.0025 Score=47.83 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=20.3
Q ss_pred cceEEEECCCCCCHHHHHHHHHh
Q psy549 49 KRRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
...|+++|++||||||+.+.|..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999864
No 326
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.32 E-value=0.0021 Score=52.65 Aligned_cols=22 Identities=36% Similarity=0.477 Sum_probs=20.1
Q ss_pred cceEEEECCCCCCHHHHHHHHH
Q psy549 49 KRRVVVMGGARVGKSSIISQFL 70 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~ 70 (253)
.-.++|+|++|||||||+|.+.
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3478999999999999999998
No 327
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.32 E-value=0.0011 Score=49.58 Aligned_cols=22 Identities=18% Similarity=0.433 Sum_probs=20.1
Q ss_pred eEEEECCCCCCHHHHHHHHHhC
Q psy549 51 RVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
.|+|+|++|+|||||++.+.+-
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998864
No 328
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.32 E-value=0.0022 Score=48.28 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=19.6
Q ss_pred ceEEEECCCCCCHHHHHHHHHh
Q psy549 50 RRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
..|+|.|.+||||||+++.|..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999874
No 329
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.30 E-value=0.0029 Score=49.58 Aligned_cols=24 Identities=21% Similarity=0.338 Sum_probs=21.1
Q ss_pred CcceEEEECCCCCCHHHHHHHHHh
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
....|+|+|.+||||||+.+.|..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999874
No 330
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.29 E-value=0.0032 Score=51.92 Aligned_cols=25 Identities=24% Similarity=0.198 Sum_probs=21.8
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHh
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
...+-|+|+|++|||||||++.|.+
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998865
No 331
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.28 E-value=0.0066 Score=43.65 Aligned_cols=23 Identities=17% Similarity=0.179 Sum_probs=19.7
Q ss_pred ceEEEECCCCCCHHHHHHHHHhC
Q psy549 50 RRVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
..|+|.|++|+|||++++.+...
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCT
T ss_pred CcEEEECCCCccHHHHHHHHHHh
Confidence 46999999999999999876543
No 332
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.25 E-value=0.0034 Score=47.77 Aligned_cols=24 Identities=17% Similarity=0.210 Sum_probs=21.4
Q ss_pred cceEEEECCCCCCHHHHHHHHHhC
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
...|+|.|.+||||||+++.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 467999999999999999998864
No 333
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.25 E-value=0.0035 Score=48.03 Aligned_cols=24 Identities=25% Similarity=0.259 Sum_probs=21.1
Q ss_pred CcceEEEECCCCCCHHHHHHHHHh
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
....|+|.|.+||||||+++.|..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 346899999999999999999875
No 334
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.25 E-value=0.003 Score=48.30 Aligned_cols=23 Identities=22% Similarity=0.065 Sum_probs=20.7
Q ss_pred cceEEEECCCCCCHHHHHHHHHh
Q psy549 49 KRRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
...|+|.|.+||||||+++.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 36799999999999999999875
No 335
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.24 E-value=0.0037 Score=50.84 Aligned_cols=24 Identities=21% Similarity=0.041 Sum_probs=21.2
Q ss_pred CcceEEEECCCCCCHHHHHHHHHh
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
....|+|+|++|||||||++.|..
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998764
No 336
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.22 E-value=0.003 Score=49.44 Aligned_cols=27 Identities=19% Similarity=0.283 Sum_probs=23.0
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhC
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
.....-|+|.|+.|||||||++.|.+.
T Consensus 17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 17 GTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 345578999999999999999998764
No 337
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.22 E-value=0.0017 Score=53.23 Aligned_cols=26 Identities=19% Similarity=0.314 Sum_probs=21.5
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCC
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDR 73 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~ 73 (253)
..=.++|+|++|+|||||++.+.+-.
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCC
Confidence 34478999999999999999887643
No 338
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.22 E-value=0.0026 Score=49.10 Aligned_cols=22 Identities=18% Similarity=0.410 Sum_probs=19.7
Q ss_pred ceEEEECCCCCCHHHHHHHHHh
Q psy549 50 RRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
++|+|.|.+||||||+++.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999874
No 339
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.22 E-value=0.0031 Score=47.52 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=20.2
Q ss_pred cceEEEECCCCCCHHHHHHHHHh
Q psy549 49 KRRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
...|+|.|.+||||||+.+.|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998864
No 340
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.22 E-value=0.0027 Score=51.23 Aligned_cols=21 Identities=19% Similarity=0.349 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHhC
Q psy549 52 VVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 52 I~iiG~~~~GKSsLi~~l~~~ 72 (253)
|+++|++|+|||||++.+.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999998874
No 341
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.22 E-value=0.0023 Score=53.78 Aligned_cols=25 Identities=24% Similarity=0.472 Sum_probs=22.1
Q ss_pred cceEEEECCCCCCHHHHHHHHHhCC
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYDR 73 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~~ 73 (253)
.-+++|+|++|+|||||++.|.+-.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999988753
No 342
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.21 E-value=0.0028 Score=49.21 Aligned_cols=23 Identities=17% Similarity=0.244 Sum_probs=20.4
Q ss_pred cceEEEECCCCCCHHHHHHHHHh
Q psy549 49 KRRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
...|+|+|++||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999874
No 343
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.19 E-value=0.003 Score=47.02 Aligned_cols=21 Identities=24% Similarity=0.349 Sum_probs=19.2
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q psy549 51 RVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~ 71 (253)
+|+|+|++||||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999998864
No 344
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.17 E-value=0.0025 Score=53.34 Aligned_cols=24 Identities=13% Similarity=0.296 Sum_probs=20.9
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCC
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDR 73 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~ 73 (253)
=-++|+|++|||||||++.+.+-.
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 357899999999999999988754
No 345
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.17 E-value=0.0025 Score=51.79 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=20.8
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCC
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDR 73 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~ 73 (253)
=.++|+|+.|+|||||++.+.+-.
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 367999999999999999988653
No 346
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.16 E-value=0.0034 Score=47.42 Aligned_cols=24 Identities=21% Similarity=0.414 Sum_probs=20.9
Q ss_pred CcceEEEECCCCCCHHHHHHHHHh
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
....|+|+|.+||||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998864
No 347
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.16 E-value=0.0039 Score=47.63 Aligned_cols=24 Identities=21% Similarity=0.290 Sum_probs=21.1
Q ss_pred CcceEEEECCCCCCHHHHHHHHHh
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
....|+|+|++|+|||||++.|.+
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998875
No 348
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.14 E-value=0.003 Score=52.96 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=20.7
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCC
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDR 73 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~ 73 (253)
=.++|+|++|||||||++.+.+-.
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHhcCC
Confidence 357899999999999999888743
No 349
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.14 E-value=0.0035 Score=46.19 Aligned_cols=21 Identities=29% Similarity=0.308 Sum_probs=19.4
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q psy549 51 RVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~ 71 (253)
+|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999875
No 350
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.13 E-value=0.003 Score=52.82 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=20.8
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCC
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDR 73 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~ 73 (253)
=.++|+|++|||||||++.+.+-.
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 357899999999999999988754
No 351
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.13 E-value=0.0038 Score=51.22 Aligned_cols=24 Identities=21% Similarity=0.202 Sum_probs=21.5
Q ss_pred CcceEEEECCCCCCHHHHHHHHHh
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
....|+|+|++|||||||++.|.+
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 446899999999999999999887
No 352
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.11 E-value=0.0033 Score=49.81 Aligned_cols=21 Identities=24% Similarity=0.423 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHhC
Q psy549 52 VVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 52 I~iiG~~~~GKSsLi~~l~~~ 72 (253)
++|+|++|+|||||++.+.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999998864
No 353
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.10 E-value=0.0032 Score=52.78 Aligned_cols=24 Identities=17% Similarity=0.189 Sum_probs=20.8
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCC
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDR 73 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~ 73 (253)
=.++|+|++|||||||++.+.+-.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHHCCC
Confidence 367899999999999999988743
No 354
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.10 E-value=0.0038 Score=50.69 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=21.1
Q ss_pred CcceEEEECCCCCCHHHHHHHHHh
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
....|+|.|++||||||+++.|..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999974
No 355
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.09 E-value=0.0046 Score=49.12 Aligned_cols=23 Identities=17% Similarity=0.229 Sum_probs=20.9
Q ss_pred CcceEEEECCCCCCHHHHHHHHH
Q psy549 48 DKRRVVVMGGARVGKSSIISQFL 70 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~ 70 (253)
....|+|+|++||||||+++.|.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999988
No 356
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.09 E-value=0.0033 Score=52.74 Aligned_cols=24 Identities=17% Similarity=0.210 Sum_probs=20.8
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCC
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDR 73 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~ 73 (253)
=.++|+|++|||||||++.+.+-.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 467899999999999999988743
No 357
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.09 E-value=0.0033 Score=53.03 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=20.8
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCC
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDR 73 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~ 73 (253)
=-++|+|++|||||||++.+.+-.
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHHcCC
Confidence 357899999999999999988744
No 358
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.09 E-value=0.0022 Score=46.76 Aligned_cols=25 Identities=20% Similarity=0.367 Sum_probs=21.4
Q ss_pred cceEEEECCCCCCHHHHHHHHHhCC
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYDR 73 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~~ 73 (253)
.-.++|+|++|+|||+|++.+.+..
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3468999999999999999988743
No 359
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.06 E-value=0.0041 Score=46.36 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=20.4
Q ss_pred ceEEEECCCCCCHHHHHHHHHhC
Q psy549 50 RRVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
-.++|.|++|+|||+|++.+...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 56899999999999999998764
No 360
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.05 E-value=0.0051 Score=46.22 Aligned_cols=24 Identities=21% Similarity=0.203 Sum_probs=21.1
Q ss_pred CcceEEEECCCCCCHHHHHHHHHh
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
....|+|+|.+|+||||+++.+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 456799999999999999998875
No 361
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.04 E-value=0.0047 Score=45.98 Aligned_cols=22 Identities=18% Similarity=0.365 Sum_probs=20.0
Q ss_pred ceEEEECCCCCCHHHHHHHHHh
Q psy549 50 RRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
..|+|+|.+|+|||||+.++..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999886
No 362
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.04 E-value=0.0042 Score=47.20 Aligned_cols=25 Identities=16% Similarity=0.129 Sum_probs=22.0
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhC
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
....|+|+|.+||||||+.+.|...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 3468999999999999999998865
No 363
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.04 E-value=0.0035 Score=52.51 Aligned_cols=21 Identities=33% Similarity=0.458 Sum_probs=19.8
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q psy549 51 RVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~ 71 (253)
.|+|+|++|||||||++.+++
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 799999999999999999876
No 364
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.04 E-value=0.006 Score=49.95 Aligned_cols=24 Identities=33% Similarity=0.450 Sum_probs=20.9
Q ss_pred CcceEEEECCCCCCHHHHHHHHHh
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
..-.|+|+|++|||||||++.+.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 345899999999999999999883
No 365
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.04 E-value=0.0036 Score=52.69 Aligned_cols=24 Identities=17% Similarity=0.253 Sum_probs=20.8
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCC
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDR 73 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~ 73 (253)
=.++|+|++|||||||++.+.+-.
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCChHHHHHHHHHcCC
Confidence 467899999999999999988643
No 366
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.03 E-value=0.0036 Score=52.76 Aligned_cols=23 Identities=13% Similarity=0.251 Sum_probs=20.4
Q ss_pred eEEEECCCCCCHHHHHHHHHhCC
Q psy549 51 RVVVMGGARVGKSSIISQFLYDR 73 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~~~ 73 (253)
.++|+|++|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 57899999999999999988754
No 367
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.03 E-value=0.0041 Score=48.36 Aligned_cols=21 Identities=14% Similarity=0.199 Sum_probs=19.2
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q psy549 51 RVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~ 71 (253)
.|+|.|.+||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 368
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.00 E-value=0.0036 Score=48.45 Aligned_cols=23 Identities=17% Similarity=0.318 Sum_probs=20.5
Q ss_pred cceEEEECCCCCCHHHHHHHHHh
Q psy549 49 KRRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
...|+|+|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999998864
No 369
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.98 E-value=0.0041 Score=50.91 Aligned_cols=24 Identities=13% Similarity=0.275 Sum_probs=20.9
Q ss_pred CcceEEEECCCCCCHHHHHHHHHh
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
..-.|+|+|++||||||+++.+.+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 345789999999999999999884
No 370
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.95 E-value=0.0047 Score=46.48 Aligned_cols=21 Identities=14% Similarity=0.159 Sum_probs=19.3
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q psy549 51 RVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~ 71 (253)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999875
No 371
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.95 E-value=0.0051 Score=47.50 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=20.8
Q ss_pred cceEEEECCCCCCHHHHHHHHHh
Q psy549 49 KRRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
.+.|+|.|.+||||||+++.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999875
No 372
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.94 E-value=0.0042 Score=51.52 Aligned_cols=23 Identities=17% Similarity=0.378 Sum_probs=20.5
Q ss_pred ceEEEECCCCCCHHHHHHHHHhC
Q psy549 50 RRVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
-.++|+|++|+|||||++.+.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 35899999999999999998874
No 373
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.94 E-value=0.0048 Score=46.60 Aligned_cols=22 Identities=23% Similarity=0.128 Sum_probs=19.6
Q ss_pred eEEEECCCCCCHHHHHHHHHhC
Q psy549 51 RVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
-|+|.|.+||||||+++.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998753
No 374
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.94 E-value=0.0045 Score=46.84 Aligned_cols=23 Identities=17% Similarity=0.426 Sum_probs=20.4
Q ss_pred cceEEEECCCCCCHHHHHHHHHh
Q psy549 49 KRRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
...|+|.|.+||||||+.+.|..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998875
No 375
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.94 E-value=0.0044 Score=49.22 Aligned_cols=24 Identities=17% Similarity=0.166 Sum_probs=21.1
Q ss_pred CcceEEEECCCCCCHHHHHHHHHh
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
....|+|+|++||||||+.+.|..
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999875
No 376
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.93 E-value=0.0046 Score=49.21 Aligned_cols=21 Identities=19% Similarity=0.246 Sum_probs=19.0
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q psy549 51 RVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~ 71 (253)
.|+|+|++|||||||.+.|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999999874
No 377
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=95.91 E-value=0.003 Score=52.72 Aligned_cols=24 Identities=17% Similarity=0.227 Sum_probs=20.8
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCC
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDR 73 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~ 73 (253)
=.++|+|++|||||||++.+.+-.
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCccHHHHHHHHHcCC
Confidence 368899999999999999988743
No 378
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.90 E-value=0.0018 Score=49.80 Aligned_cols=21 Identities=14% Similarity=0.300 Sum_probs=19.1
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q psy549 51 RVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~ 71 (253)
-|+|.|.+||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999875
No 379
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.89 E-value=0.0048 Score=46.20 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=19.6
Q ss_pred ceEEEECCCCCCHHHHHHHHHh
Q psy549 50 RRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
..|+|+|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999998864
No 380
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.89 E-value=0.0047 Score=51.15 Aligned_cols=24 Identities=17% Similarity=0.277 Sum_probs=21.4
Q ss_pred CcceEEEECCCCCCHHHHHHHHHh
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
..--|+|+|++||||||+++.+.+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999884
No 381
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.88 E-value=0.0048 Score=49.63 Aligned_cols=21 Identities=24% Similarity=0.423 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHhC
Q psy549 52 VVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 52 I~iiG~~~~GKSsLi~~l~~~ 72 (253)
|+|+|++|+|||||++.+.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 999999999999999998864
No 382
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.88 E-value=0.0048 Score=52.03 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=20.7
Q ss_pred cceEEEECCCCCCHHHHHHHHHh
Q psy549 49 KRRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
.-.|+|+|++|||||||++.+.+
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 34699999999999999999886
No 383
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.87 E-value=0.0063 Score=45.71 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=19.9
Q ss_pred ceEEEECCCCCCHHHHHHHHHh
Q psy549 50 RRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
..|+|.|.+||||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999864
No 384
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.87 E-value=0.004 Score=51.63 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=20.8
Q ss_pred eEEEECCCCCCHHHHHHHHHhCC
Q psy549 51 RVVVMGGARVGKSSIISQFLYDR 73 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~~~ 73 (253)
.++|+|++|+|||||++.+.+-.
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999988754
No 385
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.86 E-value=0.004 Score=52.26 Aligned_cols=25 Identities=24% Similarity=0.519 Sum_probs=21.7
Q ss_pred cceEEEECCCCCCHHHHHHHHHhCC
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYDR 73 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~~ 73 (253)
.-.|+|+|++|+|||||++.+.+-.
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcC
Confidence 3489999999999999999988753
No 386
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.86 E-value=0.005 Score=45.48 Aligned_cols=22 Identities=9% Similarity=0.285 Sum_probs=19.6
Q ss_pred ceEEEECCCCCCHHHHHHHHHh
Q psy549 50 RRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
..|+|.|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998874
No 387
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.85 E-value=0.0058 Score=48.73 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=20.4
Q ss_pred cceEEEECCCCCCHHHHHHHHHh
Q psy549 49 KRRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
...|+|+|.+||||||+++.|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999999875
No 388
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.84 E-value=0.0052 Score=47.64 Aligned_cols=22 Identities=18% Similarity=0.282 Sum_probs=19.7
Q ss_pred ceEEEECCCCCCHHHHHHHHHh
Q psy549 50 RRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
--++|+|++|+|||||+..+..
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4688999999999999999884
No 389
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.83 E-value=0.0066 Score=45.28 Aligned_cols=23 Identities=17% Similarity=0.146 Sum_probs=20.5
Q ss_pred cceEEEECCCCCCHHHHHHHHHh
Q psy549 49 KRRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
...|+|+|.+||||||+++.|..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998876
No 390
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.79 E-value=0.0063 Score=47.77 Aligned_cols=24 Identities=33% Similarity=0.274 Sum_probs=20.8
Q ss_pred CcceEEEECCCCCCHHHHHHHHHh
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
..+.|+|.|++|+||||+.+.|..
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998873
No 391
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=95.79 E-value=0.0047 Score=52.34 Aligned_cols=24 Identities=38% Similarity=0.560 Sum_probs=20.7
Q ss_pred cceEEEECCCCCCHHHHHHHHHhC
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
.=.++|+|++|||||||++.+.+-
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCChHHHHHHHHhCC
Confidence 346899999999999999998863
No 392
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.74 E-value=0.0056 Score=45.73 Aligned_cols=21 Identities=29% Similarity=0.464 Sum_probs=18.9
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q psy549 51 RVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~ 71 (253)
-.+|+|+.|+|||||++.+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999875
No 393
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=95.72 E-value=0.003 Score=52.86 Aligned_cols=24 Identities=17% Similarity=0.261 Sum_probs=20.9
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCC
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDR 73 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~ 73 (253)
=.++|+|++|||||||++.+.+-.
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 368899999999999999988754
No 394
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.72 E-value=0.004 Score=46.50 Aligned_cols=23 Identities=17% Similarity=0.150 Sum_probs=16.3
Q ss_pred cceEEEECCCCCCHHHHHHHHHh
Q psy549 49 KRRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
...|+|.|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999864
No 395
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.72 E-value=0.0051 Score=45.71 Aligned_cols=24 Identities=25% Similarity=0.534 Sum_probs=20.6
Q ss_pred cceEEEECCCCCCHHHHHHHHHhC
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
...|+|.|++|+|||+|++.+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999988753
No 396
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.70 E-value=0.0058 Score=52.30 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=20.6
Q ss_pred ceEEEECCCCCCHHHHHHHHHhC
Q psy549 50 RRVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
=.|+|+|++|||||||++.+++.
T Consensus 168 gii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHhh
Confidence 36899999999999999999874
No 397
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.69 E-value=0.0064 Score=48.22 Aligned_cols=23 Identities=17% Similarity=0.349 Sum_probs=20.3
Q ss_pred ceEEEECCCCCCHHHHHHHHHhC
Q psy549 50 RRVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
..|+|+|++|+|||+|++.+.+.
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 35999999999999999998763
No 398
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.68 E-value=0.0087 Score=46.80 Aligned_cols=25 Identities=16% Similarity=0.236 Sum_probs=21.9
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhC
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
....|+|.|++||||||+++.|...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999998763
No 399
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.67 E-value=0.0073 Score=44.50 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=19.6
Q ss_pred ceEEEECCCCCCHHHHHHHHHh
Q psy549 50 RRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
-.|+|.|.+||||||+.+.|..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998864
No 400
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.66 E-value=0.0065 Score=50.90 Aligned_cols=24 Identities=13% Similarity=0.275 Sum_probs=21.0
Q ss_pred CcceEEEECCCCCCHHHHHHHHHh
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
..-.|+|+|++||||||+++.+.+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 445789999999999999999884
No 401
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.66 E-value=0.0072 Score=47.90 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=21.1
Q ss_pred CcceEEEECCCCCCHHHHHHHHHh
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
..+.|+|.|.+||||||+.+.|..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 447899999999999999998865
No 402
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.62 E-value=0.0076 Score=46.82 Aligned_cols=25 Identities=12% Similarity=0.263 Sum_probs=21.4
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhC
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
..-.++|.|++|+|||+|++.+...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999999999998753
No 403
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=95.61 E-value=0.0067 Score=50.63 Aligned_cols=26 Identities=23% Similarity=0.418 Sum_probs=22.5
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCC
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDR 73 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~ 73 (253)
..=+++|+|++|+|||||++.+.+..
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34488999999999999999999864
No 404
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.61 E-value=0.0086 Score=48.37 Aligned_cols=25 Identities=20% Similarity=0.161 Sum_probs=21.6
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHh
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
...+.|+|.|.+||||||+.+.|..
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999873
No 405
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.60 E-value=0.006 Score=52.92 Aligned_cols=24 Identities=33% Similarity=0.634 Sum_probs=21.2
Q ss_pred CcceEEEECCCCCCHHHHHHHHHh
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
..-.++|+|+.|||||||++.+.+
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~G 160 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCS 160 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 345899999999999999999886
No 406
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.58 E-value=0.0071 Score=52.69 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=21.1
Q ss_pred CcceEEEECCCCCCHHHHHHHHHh
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
..-.|+|+|++|||||||++.|.+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHH
Confidence 456799999999999999999874
No 407
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.57 E-value=0.0065 Score=49.31 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=21.0
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhC
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
..=-++|+|++|+|||||+..+.+.
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 3346899999999999999998863
No 408
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.56 E-value=0.0078 Score=46.25 Aligned_cols=24 Identities=21% Similarity=0.081 Sum_probs=21.1
Q ss_pred CcceEEEECCCCCCHHHHHHHHHh
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
..--++|+|++|+|||||+..+..
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 334689999999999999999987
No 409
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.55 E-value=0.0079 Score=46.99 Aligned_cols=25 Identities=20% Similarity=0.264 Sum_probs=21.7
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhC
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
..--++|+|++|+|||||+..+...
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3457899999999999999999874
No 410
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.55 E-value=0.0091 Score=43.00 Aligned_cols=25 Identities=12% Similarity=0.021 Sum_probs=21.5
Q ss_pred cceEEEECCCCCCHHHHHHHHHhCC
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYDR 73 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~~ 73 (253)
...|+|.|++|+|||++++.+....
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhC
Confidence 3569999999999999999987643
No 411
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.54 E-value=0.0065 Score=53.43 Aligned_cols=25 Identities=20% Similarity=0.337 Sum_probs=21.5
Q ss_pred cceEEEECCCCCCHHHHHHHHHhCC
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYDR 73 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~~ 73 (253)
.-.|+|+|++|||||||++.+++--
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3469999999999999999988744
No 412
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.54 E-value=0.0088 Score=45.48 Aligned_cols=23 Identities=17% Similarity=0.392 Sum_probs=20.6
Q ss_pred ceEEEECCCCCCHHHHHHHHHhC
Q psy549 50 RRVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
..++|.|++|+|||+|+..+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999988763
No 413
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.52 E-value=0.008 Score=47.73 Aligned_cols=23 Identities=17% Similarity=0.232 Sum_probs=20.5
Q ss_pred cceEEEECCCCCCHHHHHHHHHh
Q psy549 49 KRRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
.-.|+|+|++|+||||+.+.|..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998864
No 414
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.52 E-value=0.011 Score=48.10 Aligned_cols=24 Identities=13% Similarity=0.212 Sum_probs=20.5
Q ss_pred CcceEEEECCCCCCHHHHHHHHHh
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
....|+|.|++|+|||+|++.+..
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 446899999999999999987664
No 415
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.50 E-value=0.011 Score=45.43 Aligned_cols=23 Identities=17% Similarity=0.192 Sum_probs=20.3
Q ss_pred cceEEEECCCCCCHHHHHHHHHh
Q psy549 49 KRRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
...|+|+|.+|+||||+++.|..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998765
No 416
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.45 E-value=0.0074 Score=46.29 Aligned_cols=21 Identities=33% Similarity=0.365 Sum_probs=18.9
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q psy549 51 RVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~ 71 (253)
.++|.|+||+|||+++.++..
T Consensus 60 ~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999888775
No 417
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=95.42 E-value=0.039 Score=47.47 Aligned_cols=96 Identities=21% Similarity=0.188 Sum_probs=52.4
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHh------------------CCCC--CCccc-cceeee---eeeEEcCCCcEEEEEE
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLY------------------DRFI--SRYKE-TVEELH---RGEYELPDGAQLTLDI 102 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~------------------~~~~--~~~~~-t~~~~~---~~~~~~~~~~~~~~~l 102 (253)
.+..-|+|+|..++|||+|+|.|+. ..|. ....+ |.+-.. ...+..+++..+.+-+
T Consensus 65 ~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vll 144 (457)
T 4ido_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLL 144 (457)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEE
T ss_pred CceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEE
Confidence 3556778999999999999996651 1221 11112 222111 1123345777888999
Q ss_pred EeCCCCCCChhh------HH-HhcccCCEEEEEEEC-CChhhHHHHHH
Q psy549 103 LDTSGAYQFPAM------RE-LSISTADAFVLVYAV-DDASTWDVVKD 142 (253)
Q Consensus 103 ~D~~g~~~~~~~------~~-~~~~~~d~~i~v~d~-~~~~s~~~~~~ 142 (253)
+||.|....... .- ..+--++.+||-..- -+...++.+..
T Consensus 145 lDTEG~~d~~~~~~~d~~ifaLa~LLSS~~IyN~~~~i~~~~L~~L~~ 192 (457)
T 4ido_A 145 MDTQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQHLQL 192 (457)
T ss_dssp EEECCBTCTTCCHHHHHHHHHHHHHHCSEEEEEEESSCCHHHHHHHHH
T ss_pred EeccCCCCcccCccccHHHHHHHHHHhhheeecccccCCHHHHHHHHH
Confidence 999995533211 11 122346666664433 34444555443
No 418
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.41 E-value=0.0093 Score=43.31 Aligned_cols=20 Identities=30% Similarity=0.521 Sum_probs=17.7
Q ss_pred eEEEECCCCCCHHHHHHHHH
Q psy549 51 RVVVMGGARVGKSSIISQFL 70 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~ 70 (253)
-.+|+|+.|+|||||+.++.
T Consensus 25 ~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 35789999999999999976
No 419
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.36 E-value=0.0062 Score=50.18 Aligned_cols=23 Identities=17% Similarity=0.369 Sum_probs=20.5
Q ss_pred ceEEEECCCCCCHHHHHHHHHhC
Q psy549 50 RRVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
.-++|+|..|||||||++.+.+.
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHS
T ss_pred cEEEEEecCCCCHHHHHHHHHhh
Confidence 45789999999999999999975
No 420
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.35 E-value=0.01 Score=45.07 Aligned_cols=25 Identities=20% Similarity=0.221 Sum_probs=21.9
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhC
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
..+.|+|+|.+||||||+.+.|...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999998754
No 421
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.35 E-value=0.013 Score=47.69 Aligned_cols=25 Identities=20% Similarity=0.114 Sum_probs=20.8
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhC
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
...-|++.|+||+|||+|++.+...
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3456788899999999999998864
No 422
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.31 E-value=0.0099 Score=51.73 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=19.7
Q ss_pred ceEEEECCCCCCHHHHHHHHHh
Q psy549 50 RRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
=.++|+|++|+|||||++.+.+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 4678999999999999999884
No 423
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.30 E-value=0.01 Score=50.10 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=21.0
Q ss_pred CcceEEEECCCCCCHHHHHHHHHh
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
..-.|+|+|++|+|||||++.+.+
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 335789999999999999999886
No 424
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.30 E-value=0.01 Score=52.51 Aligned_cols=27 Identities=22% Similarity=0.238 Sum_probs=22.7
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCC
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDR 73 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~ 73 (253)
...=.++|+|++|+|||||++.+.+-.
T Consensus 45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 45 KEGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344578999999999999999988744
No 425
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.26 E-value=0.013 Score=47.06 Aligned_cols=24 Identities=13% Similarity=0.317 Sum_probs=21.0
Q ss_pred cceEEEECCCCCCHHHHHHHHHhC
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
...++|.|++|+|||+|++.+...
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 346999999999999999998764
No 426
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.25 E-value=0.011 Score=45.68 Aligned_cols=21 Identities=29% Similarity=0.314 Sum_probs=19.3
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q psy549 51 RVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~ 71 (253)
.++|.|++|+|||+|++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999875
No 427
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.25 E-value=0.014 Score=46.15 Aligned_cols=24 Identities=13% Similarity=0.317 Sum_probs=20.8
Q ss_pred cceEEEECCCCCCHHHHHHHHHhC
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
...|+|.|++|+|||+|++.+...
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 356999999999999999998763
No 428
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.24 E-value=0.013 Score=47.41 Aligned_cols=24 Identities=13% Similarity=0.292 Sum_probs=21.2
Q ss_pred cceEEEECCCCCCHHHHHHHHHhC
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
...|+|.|++|+|||+|++.+.+.
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 457999999999999999998763
No 429
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.24 E-value=0.01 Score=51.12 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=22.4
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCC
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDR 73 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~ 73 (253)
..=+++|+|++|+|||||++.+.+..
T Consensus 156 ~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 156 RGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 34488999999999999999998854
No 430
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.23 E-value=0.012 Score=44.94 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=19.6
Q ss_pred eEEEECCCCCCHHHHHHHHHhC
Q psy549 51 RVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
.++|.|++|+|||+|++.+...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999998753
No 431
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.21 E-value=0.011 Score=47.91 Aligned_cols=22 Identities=23% Similarity=0.465 Sum_probs=20.0
Q ss_pred ceEEEECCCCCCHHHHHHHHHh
Q psy549 50 RRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
..|+|+|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999885
No 432
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.19 E-value=0.012 Score=46.19 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=21.0
Q ss_pred CcceEEEECCCCCCHHHHHHHHHh
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
...-|+|.|.+||||||+++.|..
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~ 49 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVE 49 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999864
No 433
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.14 E-value=0.016 Score=45.40 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=21.1
Q ss_pred CcceEEEECCCCCCHHHHHHHHHh
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
....|+|+|.+|+||||+.+.|..
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 446899999999999999998875
No 434
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.14 E-value=0.012 Score=47.95 Aligned_cols=24 Identities=17% Similarity=0.326 Sum_probs=21.0
Q ss_pred cceEEEECCCCCCHHHHHHHHHhC
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
.-.|+|.|++|+|||+|++.+.+.
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CceEEEECCCCcCHHHHHHHHHHH
Confidence 346999999999999999998864
No 435
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.09 E-value=0.0091 Score=47.61 Aligned_cols=26 Identities=15% Similarity=0.294 Sum_probs=21.6
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhC
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
.....|+|.|.+||||||+++.|...
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHh
Confidence 45578999999999999999887653
No 436
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.08 E-value=0.011 Score=52.91 Aligned_cols=26 Identities=27% Similarity=0.279 Sum_probs=21.9
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCC
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDR 73 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~ 73 (253)
..=.++|+|++|+|||||++.+.+-.
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 34478999999999999999888743
No 437
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.04 E-value=0.013 Score=52.65 Aligned_cols=26 Identities=15% Similarity=0.250 Sum_probs=22.2
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCC
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDR 73 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~ 73 (253)
..=.++|+|++|+|||||++.+.+-.
T Consensus 102 ~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 102 PGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCC
Confidence 44579999999999999999988743
No 438
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.03 E-value=0.012 Score=52.53 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=21.9
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCC
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDR 73 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~ 73 (253)
..=.++|+|++|+|||||++.+.+-.
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34478999999999999999988743
No 439
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.01 E-value=0.014 Score=48.04 Aligned_cols=23 Identities=13% Similarity=0.333 Sum_probs=20.4
Q ss_pred ceEEEECCCCCCHHHHHHHHHhC
Q psy549 50 RRVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
-.++|.|++|+|||+|++.+.+.
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999999999998863
No 440
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.00 E-value=0.013 Score=47.16 Aligned_cols=24 Identities=17% Similarity=0.097 Sum_probs=20.8
Q ss_pred CcceEEEECCCCCCHHHHHHHHHh
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
..--++|+|++|+|||||+..+..
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 345789999999999999999885
No 441
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=94.96 E-value=0.019 Score=46.61 Aligned_cols=24 Identities=17% Similarity=0.303 Sum_probs=21.0
Q ss_pred cceEEEECCCCCCHHHHHHHHHhC
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
.-.++|+|++|+|||++++.+...
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHHH
Confidence 347999999999999999988764
No 442
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.95 E-value=0.02 Score=45.70 Aligned_cols=26 Identities=15% Similarity=0.281 Sum_probs=22.3
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhC
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
.....++|.|++|+|||+|++.+...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34568999999999999999998764
No 443
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.93 E-value=0.023 Score=48.60 Aligned_cols=25 Identities=32% Similarity=0.441 Sum_probs=21.2
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhC
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
...-|+|+|.+||||||++++|...
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3457889999999999999998753
No 444
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.93 E-value=0.021 Score=50.56 Aligned_cols=28 Identities=21% Similarity=0.355 Sum_probs=22.9
Q ss_pred CCCcceEEEECCCCCCHHHHHHHHHhCC
Q psy549 46 QKDKRRVVVMGGARVGKSSIISQFLYDR 73 (253)
Q Consensus 46 ~~~~~~I~iiG~~~~GKSsLi~~l~~~~ 73 (253)
....=-++|+|+.|+|||||++.+.+-.
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3344578999999999999999988743
No 445
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.92 E-value=0.018 Score=43.83 Aligned_cols=21 Identities=29% Similarity=0.320 Sum_probs=19.4
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q psy549 51 RVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~ 71 (253)
.|+|.|.+||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999865
No 446
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.87 E-value=0.016 Score=51.24 Aligned_cols=24 Identities=13% Similarity=0.279 Sum_probs=21.1
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCC
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDR 73 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~ 73 (253)
=.++|+|+.|+|||||++.+.+-.
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368899999999999999998754
No 447
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.84 E-value=0.015 Score=52.16 Aligned_cols=27 Identities=22% Similarity=0.254 Sum_probs=22.5
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCC
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDR 73 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~ 73 (253)
...=.++|+|++|+|||||++.+.+-.
T Consensus 115 ~~Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 115 KDGMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 344578999999999999999988744
No 448
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=94.81 E-value=0.017 Score=48.57 Aligned_cols=19 Identities=37% Similarity=0.448 Sum_probs=17.5
Q ss_pred EEEECCCCCCHHHHHHHHH
Q psy549 52 VVVMGGARVGKSSIISQFL 70 (253)
Q Consensus 52 I~iiG~~~~GKSsLi~~l~ 70 (253)
.+|+|+.|+|||||++.+.
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5699999999999999987
No 449
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.80 E-value=0.02 Score=44.75 Aligned_cols=23 Identities=17% Similarity=0.336 Sum_probs=20.2
Q ss_pred cceEEEECCCCCCHHHHHHHHHh
Q psy549 49 KRRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
.++.+|+|+|||||||+..+|..
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHH
Confidence 47899999999999999998864
No 450
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.78 E-value=0.015 Score=51.38 Aligned_cols=23 Identities=13% Similarity=0.307 Sum_probs=20.4
Q ss_pred eEEEECCCCCCHHHHHHHHHhCC
Q psy549 51 RVVVMGGARVGKSSIISQFLYDR 73 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~~~ 73 (253)
.++|+|++|+|||||++.+.+-.
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999988744
No 451
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.75 E-value=0.016 Score=48.38 Aligned_cols=24 Identities=17% Similarity=0.372 Sum_probs=20.9
Q ss_pred cceEEEECCCCCCHHHHHHHHHhC
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
.-.++|.|++|+|||+|++.+.+.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 347899999999999999998863
No 452
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.74 E-value=0.018 Score=51.69 Aligned_cols=23 Identities=13% Similarity=0.286 Sum_probs=20.6
Q ss_pred eEEEECCCCCCHHHHHHHHHhCC
Q psy549 51 RVVVMGGARVGKSSIISQFLYDR 73 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~~~ 73 (253)
.++|+|+.|+|||||++.+.+-.
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998754
No 453
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=94.74 E-value=0.021 Score=46.26 Aligned_cols=22 Identities=23% Similarity=0.526 Sum_probs=20.1
Q ss_pred ceEEEECCCCCCHHHHHHHHHh
Q psy549 50 RRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
..++|.|++|+|||+|++.+..
T Consensus 51 ~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999875
No 454
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.71 E-value=0.017 Score=45.09 Aligned_cols=22 Identities=36% Similarity=0.653 Sum_probs=18.8
Q ss_pred ceEEEECCCCCCHHHHHHHHHh
Q psy549 50 RRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
--++|+|++|+|||||+..+..
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999887763
No 455
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.70 E-value=0.015 Score=48.24 Aligned_cols=21 Identities=19% Similarity=0.303 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHHhC
Q psy549 52 VVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 52 I~iiG~~~~GKSsLi~~l~~~ 72 (253)
++|.|++|+||||+++.+.+.
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999998773
No 456
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.70 E-value=0.017 Score=47.02 Aligned_cols=22 Identities=18% Similarity=0.546 Sum_probs=19.7
Q ss_pred cceEEEECCCCCCHHHHHHHHH
Q psy549 49 KRRVVVMGGARVGKSSIISQFL 70 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~ 70 (253)
.-.|+|+|++|+||||++..|.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999999876
No 457
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=94.70 E-value=0.011 Score=52.95 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=21.4
Q ss_pred cceEEEECCCCCCHHHHHHHHHhCC
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYDR 73 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~~ 73 (253)
.=.++|+|++|+|||||++.+.+-.
T Consensus 370 G~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 370 GSVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp TCEEEEECCTTSSSTHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCc
Confidence 3478999999999999999988743
No 458
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.69 E-value=0.019 Score=49.26 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=20.5
Q ss_pred ceEEEECCCCCCHHHHHHHHHhC
Q psy549 50 RRVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
--|++.|+||+|||+|++++.+.
T Consensus 207 rGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CEEEEESCTTTTHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 45999999999999999998864
No 459
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=94.67 E-value=0.011 Score=52.88 Aligned_cols=26 Identities=23% Similarity=0.193 Sum_probs=21.4
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCC
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDR 73 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~ 73 (253)
+.=.++|+|++|+|||||++.+.+-.
T Consensus 366 ~G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 366 KGETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCC
Confidence 34478999999999999998877643
No 460
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.66 E-value=0.019 Score=47.57 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=19.9
Q ss_pred eEEEECCCCCCHHHHHHHHHhC
Q psy549 51 RVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
.++|.|++|+||||+++.+.+.
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998864
No 461
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.65 E-value=0.013 Score=52.69 Aligned_cols=26 Identities=19% Similarity=0.370 Sum_probs=21.9
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCC
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDR 73 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~ 73 (253)
+.=.++|+|++|+|||||++.+.+-.
T Consensus 380 ~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 380 PGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp TTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 44588999999999999999887643
No 462
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.64 E-value=0.027 Score=46.26 Aligned_cols=24 Identities=17% Similarity=0.299 Sum_probs=21.2
Q ss_pred cceEEEECCCCCCHHHHHHHHHhC
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
...|+|.|+||+|||+|++.+...
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 457999999999999999998764
No 463
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.64 E-value=0.028 Score=46.31 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=21.3
Q ss_pred cceEEEECCCCCCHHHHHHHHHhC
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
.-.|+|.|++|+|||+|++.+...
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHHH
Confidence 357999999999999999998864
No 464
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.63 E-value=0.021 Score=47.82 Aligned_cols=22 Identities=18% Similarity=0.345 Sum_probs=20.2
Q ss_pred eEEEECCCCCCHHHHHHHHHhC
Q psy549 51 RVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
.++|.|++|+|||+|++.+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998864
No 465
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.63 E-value=0.023 Score=47.11 Aligned_cols=22 Identities=18% Similarity=0.289 Sum_probs=19.8
Q ss_pred ceEEEECCCCCCHHHHHHHHHh
Q psy549 50 RRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
..|+|+|++|||||||...|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4789999999999999998875
No 466
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.60 E-value=0.02 Score=43.68 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=22.2
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhCC
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYDR 73 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~~ 73 (253)
....|+|+|++|+|||+|+..|...-
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 45679999999999999999988653
No 467
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.60 E-value=0.028 Score=48.22 Aligned_cols=25 Identities=12% Similarity=0.214 Sum_probs=21.9
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhC
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
..--|++.||||+|||+|++++.+.
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHH
Confidence 3457999999999999999998874
No 468
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.58 E-value=0.018 Score=45.04 Aligned_cols=25 Identities=16% Similarity=0.181 Sum_probs=18.7
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHh
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
....-|+|.|.+||||||+++.|..
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999998874
No 469
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.58 E-value=0.028 Score=45.94 Aligned_cols=23 Identities=17% Similarity=0.390 Sum_probs=20.0
Q ss_pred cceEEEECCCCCCHHHHHHHHHh
Q psy549 49 KRRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
..-|+|+|++|||||+|...+..
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHH
Confidence 34688999999999999999874
No 470
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.57 E-value=0.021 Score=49.05 Aligned_cols=25 Identities=16% Similarity=0.259 Sum_probs=21.9
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhC
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
+.--|++.||||+|||+|++++.+.
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 4467999999999999999998864
No 471
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.57 E-value=0.022 Score=46.62 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=20.0
Q ss_pred cceEEEECCCCCCHHHHHHHHHh
Q psy549 49 KRRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
.-.|+|+|++|+||||++..+.+
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHH
Confidence 45689999999999999998873
No 472
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.55 E-value=0.019 Score=47.89 Aligned_cols=27 Identities=15% Similarity=0.154 Sum_probs=22.7
Q ss_pred CCcceEEEECCCCCCHHHHHHHHHhCC
Q psy549 47 KDKRRVVVMGGARVGKSSIISQFLYDR 73 (253)
Q Consensus 47 ~~~~~I~iiG~~~~GKSsLi~~l~~~~ 73 (253)
...--+.|+|++|+|||||+..+....
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 344578999999999999999998753
No 473
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.54 E-value=0.011 Score=47.96 Aligned_cols=24 Identities=21% Similarity=0.313 Sum_probs=17.9
Q ss_pred CcceEEEECCCCCCHHHHHHHHHh
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
..+.|+|.|++||||||+.+.|..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999875
No 474
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.53 E-value=0.014 Score=52.17 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=21.1
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhC
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
..=.++|+|++|+|||||++.+.+-
T Consensus 368 ~Ge~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 368 PGSLVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp TTCEEEEECSSSSSHHHHHHTTTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3447899999999999999988764
No 475
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.53 E-value=0.027 Score=46.35 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=19.8
Q ss_pred ceEEEECCCCCCHHHHHHHHHh
Q psy549 50 RRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
..|+|+|++|||||||...|..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998875
No 476
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.51 E-value=0.021 Score=51.24 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=20.3
Q ss_pred eEEEECCCCCCHHHHHHHHHhCC
Q psy549 51 RVVVMGGARVGKSSIISQFLYDR 73 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~~~ 73 (253)
.++|+|+.|+|||||++.+.+-.
T Consensus 380 iv~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 380 ILVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 37999999999999999998744
No 477
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.43 E-value=0.024 Score=48.13 Aligned_cols=25 Identities=16% Similarity=0.299 Sum_probs=21.8
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhC
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
+.--|++.||||+|||.|++++.+.
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHh
Confidence 4457999999999999999999864
No 478
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.37 E-value=0.024 Score=46.82 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=19.7
Q ss_pred eEEEECCCCCCHHHHHHHHHhC
Q psy549 51 RVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
.++|.|++|+|||++++.+...
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999998764
No 479
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.36 E-value=0.012 Score=46.96 Aligned_cols=21 Identities=19% Similarity=0.286 Sum_probs=19.2
Q ss_pred eEEEECCCCCCHHHHHHHHHh
Q psy549 51 RVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~ 71 (253)
.|+|.|++|+|||+|++.+..
T Consensus 46 ~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 488999999999999999886
No 480
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=94.35 E-value=0.027 Score=43.04 Aligned_cols=20 Identities=30% Similarity=0.521 Sum_probs=17.6
Q ss_pred eEEEECCCCCCHHHHHHHHH
Q psy549 51 RVVVMGGARVGKSSIISQFL 70 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~ 70 (253)
-.+|+|+.|+|||||+.++.
T Consensus 25 ~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHH
Confidence 45788999999999999876
No 481
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.26 E-value=0.029 Score=43.94 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=20.3
Q ss_pred ceEEEECCCCCCHHHHHHHHHhC
Q psy549 50 RRVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
..|+|.|..||||||+++.|...
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 56999999999999999998753
No 482
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.24 E-value=0.023 Score=47.50 Aligned_cols=24 Identities=17% Similarity=0.275 Sum_probs=20.9
Q ss_pred cceEEEECCCCCCHHHHHHHHHhC
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
.-.++|.|++|+|||+|++.+...
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999998853
No 483
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=94.24 E-value=0.0044 Score=48.46 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=19.1
Q ss_pred eEEEECCCCCCHHHHHHHHHhC
Q psy549 51 RVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
-++|+|++|+|||||++.+.+-
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~ 50 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTA 50 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 3578999999999999998863
No 484
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.23 E-value=0.024 Score=47.25 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=20.6
Q ss_pred ceEEEECCCCCCHHHHHHHHHhC
Q psy549 50 RRVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
-.++|.|++|+|||+|++.+...
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998853
No 485
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=94.23 E-value=0.03 Score=52.85 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=21.7
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCCC
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDRF 74 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~~ 74 (253)
=.++|+|+.|+|||||++.+.++.+
T Consensus 462 e~v~LiGpNGsGKSTLLk~LagG~i 486 (986)
T 2iw3_A 462 RRYGICGPNGCGKSTLMRAIANGQV 486 (986)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc
Confidence 3679999999999999999997654
No 486
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.19 E-value=0.031 Score=45.74 Aligned_cols=24 Identities=17% Similarity=0.433 Sum_probs=21.0
Q ss_pred cceEEEECCCCCCHHHHHHHHHhC
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
.-.++|.|++|+|||+|+..+...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999988753
No 487
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=94.19 E-value=0.028 Score=46.96 Aligned_cols=24 Identities=17% Similarity=0.299 Sum_probs=21.0
Q ss_pred cceEEEECCCCCCHHHHHHHHHhC
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
...|+|.|++|+|||+|++.+...
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHH
Confidence 346999999999999999998864
No 488
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.18 E-value=0.032 Score=46.49 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=19.9
Q ss_pred cceEEEECCCCCCHHHHHHHHHh
Q psy549 49 KRRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
..+|+|+|++|+||||+.+.+..
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHH
Confidence 35799999999999999987663
No 489
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.17 E-value=0.031 Score=42.91 Aligned_cols=22 Identities=27% Similarity=0.336 Sum_probs=19.9
Q ss_pred ceEEEECCCCCCHHHHHHHHHh
Q psy549 50 RRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
+.|+|+|.+|+||||+.+.|..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998865
No 490
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.16 E-value=0.033 Score=46.80 Aligned_cols=24 Identities=17% Similarity=0.367 Sum_probs=21.0
Q ss_pred cceEEEECCCCCCHHHHHHHHHhC
Q psy549 49 KRRVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
...|+|.|++|+|||++++.+...
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999998763
No 491
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.12 E-value=0.028 Score=48.41 Aligned_cols=23 Identities=17% Similarity=0.404 Sum_probs=20.3
Q ss_pred ceEEEECCCCCCHHHHHHHHHhC
Q psy549 50 RRVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
-.++|.|++|+|||+|++.+.+.
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~ 153 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNY 153 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998763
No 492
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.11 E-value=0.031 Score=45.76 Aligned_cols=23 Identities=22% Similarity=0.328 Sum_probs=20.0
Q ss_pred ceEEEECCCCCCHHHHHHHHHhC
Q psy549 50 RRVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
.-|+|+|++|||||+|...|...
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred cEEEEECCCcCCHHHHHHHHHHh
Confidence 35889999999999999998753
No 493
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=94.11 E-value=0.026 Score=49.07 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=21.2
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhC
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
..-+++|+|+||+|||++++.+...
T Consensus 200 ~~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999998753
No 494
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=94.10 E-value=0.029 Score=49.14 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=19.9
Q ss_pred eEEEECCCCCCHHHHHHHHHhC
Q psy549 51 RVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 51 ~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
-|+|+|++|+|||+|++.+.+.
T Consensus 66 GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999998864
No 495
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=94.08 E-value=0.029 Score=49.75 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=20.2
Q ss_pred cceEEEECCCCCCHHHHHHHHHh
Q psy549 49 KRRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
.-.++|+|++|+|||||++.+.+
T Consensus 108 g~~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34699999999999999998875
No 496
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.07 E-value=0.033 Score=42.99 Aligned_cols=23 Identities=22% Similarity=0.089 Sum_probs=20.3
Q ss_pred cceEEEECCCCCCHHHHHHHHHh
Q psy549 49 KRRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 49 ~~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
..-|+|.|.+||||||+++.|..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999999864
No 497
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.05 E-value=0.035 Score=45.77 Aligned_cols=23 Identities=22% Similarity=0.512 Sum_probs=20.3
Q ss_pred ceEEEECCCCCCHHHHHHHHHhC
Q psy549 50 RRVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
..|+|.|++|+|||+|++.+...
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 46999999999999999998654
No 498
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=94.04 E-value=0.033 Score=44.21 Aligned_cols=24 Identities=29% Similarity=0.491 Sum_probs=21.2
Q ss_pred ceEEEECCCCCCHHHHHHHHHhCC
Q psy549 50 RRVVVMGGARVGKSSIISQFLYDR 73 (253)
Q Consensus 50 ~~I~iiG~~~~GKSsLi~~l~~~~ 73 (253)
..|+|.|++|+|||+|++.+...-
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTS
T ss_pred CCEEEECCCCCcHHHHHHHHHHhc
Confidence 579999999999999999988643
No 499
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.03 E-value=0.046 Score=45.67 Aligned_cols=24 Identities=17% Similarity=0.371 Sum_probs=21.0
Q ss_pred CcceEEEECCCCCCHHHHHHHHHh
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLY 71 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~ 71 (253)
....|+|.|+||+|||++++.+..
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999875
No 500
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.01 E-value=0.032 Score=47.67 Aligned_cols=25 Identities=16% Similarity=0.327 Sum_probs=21.8
Q ss_pred CcceEEEECCCCCCHHHHHHHHHhC
Q psy549 48 DKRRVVVMGGARVGKSSIISQFLYD 72 (253)
Q Consensus 48 ~~~~I~iiG~~~~GKSsLi~~l~~~ 72 (253)
..--|++.|+||+|||+|++++.+.
T Consensus 215 ~prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 215 PPKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp CCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCCCceECCCCchHHHHHHHHHHH
Confidence 3457999999999999999999864
Done!