RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy549
(253 letters)
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 183 bits (468), Expect = 1e-58
Identities = 72/209 (34%), Positives = 114/209 (54%), Gaps = 17/209 (8%)
Query: 46 QKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDT 105
Q + RVVV G VGKSS++ +F+ F Y T+E+ +R D + TL I DT
Sbjct: 5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISC-DKSVCTLQITDT 63
Query: 106 SGAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLM--VPIVVVGNK 163
+G++QFPAM+ LSIS AF+LV++V + + + + + IV +G + +P+++VGNK
Sbjct: 64 TGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNK 123
Query: 164 CELEFKDVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQAKVQYNLSPAVRRR 223
C+ ++V A+ +A +W+C F+E SAK NYN+ ++F+ELL RR
Sbjct: 124 CDETQREVDTREAQAVA-QEWKCAFMETSAKMNYNVKELFQELLTL----------ETRR 172
Query: 224 RQSLPNYIGTTGSASSKGRYMLKRNSCTV 252
SL +G R + CT+
Sbjct: 173 NMSLNIDGKRSGKQKRTDR---VKGKCTL 198
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein;
HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Length = 172
Score = 179 bits (457), Expect = 2e-57
Identities = 70/182 (38%), Positives = 105/182 (57%), Gaps = 15/182 (8%)
Query: 49 KRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGA 108
RV V G VGKSS++ +F+ F Y TVE+ +R D + TL I DT+G+
Sbjct: 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISC-DKSICTLQITDTTGS 61
Query: 109 YQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLM--VPIVVVGNKCEL 166
+QFPAM+ LSIS AF+LVY++ + + +K + EQI +G + +PI++VGNKC+
Sbjct: 62 HQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDE 121
Query: 167 EFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQAKVQYNLSPAVRRRRQ 225
+V+ AE +A W+C F+E SAK N+N+ ++F+ELL +RR
Sbjct: 122 SPSREVQSSEAEALA-RTWKCAFMETSAKLNHNVKELFQELLNL----------EKRRTV 170
Query: 226 SL 227
SL
Sbjct: 171 SL 172
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP;
1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Length = 167
Score = 172 bits (438), Expect = 2e-54
Identities = 59/163 (36%), Positives = 100/163 (61%), Gaps = 4/163 (2%)
Query: 49 KRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGA 108
+ +VVV+G VGKS++ QF+ FI +Y T+E+ +R E E+ D + L+ILDT+G
Sbjct: 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEV-DSSPSVLEILDTAGT 61
Query: 109 YQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLM-VPIVVVGNKCELE 167
QF +MR+L I F+LVY++ + ++ +K +R+QI+ + VP+++VGNK +LE
Sbjct: 62 EQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLE 121
Query: 168 FK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQ 209
+ +V +A +W C F+E SAK + ++F E++ Q
Sbjct: 122 SEREVSSSEGRALA-EEWGCPFMETSAKSKTMVDELFAEIVRQ 163
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein
complex, effectors, signaling protein; HET: GTP; 1.90A
{Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A*
3cf6_R* 3brw_D*
Length = 167
Score = 167 bits (426), Expect = 1e-52
Identities = 63/163 (38%), Positives = 103/163 (63%), Gaps = 3/163 (1%)
Query: 49 KRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGA 108
+ ++VV+G VGKS++ QF+ F+ +Y T+E+ +R + E+ D Q L+ILDT+G
Sbjct: 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEV-DCQQCMLEILDTAGT 61
Query: 109 YQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLM-VPIVVVGNKCELE 167
QF AMR+L + F LVY++ ST++ ++DLREQI+ + VP+++VGNKC+LE
Sbjct: 62 EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 121
Query: 168 FK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQ 209
+ V +E + +A C F+E SAK N+ ++F +L+ Q
Sbjct: 122 DERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQ 164
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein,
fluor membrane, lipoprotein, palmitate, prenylation;
HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X*
2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A*
6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A*
1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 161 bits (409), Expect = 3e-50
Identities = 50/162 (30%), Positives = 91/162 (56%), Gaps = 3/162 (1%)
Query: 49 KRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGA 108
+ ++VV+G VGKS++ Q + + F+ T+E+ +R + + DG LDILDT+G
Sbjct: 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVI-DGETCLLDILDTAGQ 61
Query: 109 YQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVN-KRGLMVPIVVVGNKCELE 167
++ AMR+ + T + F+ V+A+++ +++ + REQI K VP+V+VGNK +L
Sbjct: 62 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLA 121
Query: 168 FKDVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQ 209
+ V A+ +A + ++E SAK + F L+ +
Sbjct: 122 ARTVESRQAQDLA-RSYGIPYIETSAKTRQGVEDAFYTLVRE 162
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo
sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 161 bits (410), Expect = 4e-50
Identities = 55/181 (30%), Positives = 97/181 (53%), Gaps = 13/181 (7%)
Query: 50 RRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAY 109
++VV+G VGKS++ Q + + F+ Y T+E+ +R + + DG LDILDT+G
Sbjct: 22 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCLLDILDTAGQE 80
Query: 110 QFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLM-VPIVVVGNKCELEF 168
++ AMR+ + T + F+ V+A++++ ++ + REQI + VP+V+VGNKC+L
Sbjct: 81 EYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT 140
Query: 169 KDVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQAKVQYNLSPAVRRRRQSLP 228
+ V + A +A + F+E SAK + F L+ + +R+ R
Sbjct: 141 RTVDTKQAHELA-KSYGIPFIETSAKTRQGVEDAFYTLVRE----------IRQYRMKKL 189
Query: 229 N 229
N
Sbjct: 190 N 190
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 161 bits (409), Expect = 5e-50
Identities = 59/185 (31%), Positives = 96/185 (51%), Gaps = 13/185 (7%)
Query: 46 QKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDT 105
+ ++VV+GG VGKS++ QF+ F+S Y T+E+ + + DG LDILDT
Sbjct: 6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSV-DGIPARLDILDT 64
Query: 106 SGAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLM-VPIVVVGNKC 164
+G +F AMRE + F+LV+A++D +++ V L QI+ + P+V+VGNK
Sbjct: 65 AGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKA 124
Query: 165 ELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQAKVQYNLSPAVRRR 223
+LE + V R A + E SAK N+ + F++L+ + + +
Sbjct: 125 DLESQRQVPRSEASAFG-ASHHVAYFEASAKLRLNVDEAFEQLVRAVR---------KYQ 174
Query: 224 RQSLP 228
Q LP
Sbjct: 175 EQELP 179
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 161 bits (409), Expect = 5e-50
Identities = 46/166 (27%), Positives = 91/166 (54%), Gaps = 4/166 (2%)
Query: 46 QKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDT 105
Q R++ ++G VGKSS+ QF+ +F+ Y T+E + +G + L ++DT
Sbjct: 3 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITV-NGQEYHLQLVDT 61
Query: 106 SGAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLM-VPIVVVGNKC 164
+G ++ + + ++LVY+V +++V+K + ++++ G + +PI++VGNK
Sbjct: 62 AGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKK 121
Query: 165 ELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQ 209
+L + + E + +A W F+E SAKEN V VF+ ++ +
Sbjct: 122 DLHMERVISYEEGKALA-ESWNAAFLESSAKENQTAVDVFRRIILE 166
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 161 bits (409), Expect = 6e-50
Identities = 55/205 (26%), Positives = 105/205 (51%), Gaps = 21/205 (10%)
Query: 49 KRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGA 108
+ ++VV+G VGKS++ Q + + F+ Y T+E+ +R + + DG LDILDT+G
Sbjct: 4 EYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCLLDILDTAGQ 62
Query: 109 YQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLM-VPIVVVGNKCELE 167
++ AMR+ + T + F+ V+A+++ +++ + REQI + VP+V+VGNKC+L
Sbjct: 63 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP 122
Query: 168 FKDVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQAKVQYNLSPAVRRRRQSL 227
+ V + A+ +A + F+E SAK + F L+ + +R+ ++ +
Sbjct: 123 SRTVDTKQAQDLA-RSYGIPFIETSAKTRQGVDDAFYTLVRE----------IRKHKEKM 171
Query: 228 PNYIGTTGSASSKGRYMLKRNSCTV 252
K + + C +
Sbjct: 172 SK--------DGKKKKKKSKTKCVI 188
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 160 bits (406), Expect = 3e-49
Identities = 52/183 (28%), Positives = 91/183 (49%), Gaps = 7/183 (3%)
Query: 29 HSLGTESTSSSGTGVGLQKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRG 88
HS G E+ G R+VV++G VGK+S+ QF+ F Y TVE +
Sbjct: 7 HSSGRENLYFQGMP---LVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSK 63
Query: 89 EYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIV 148
L + L ++DT+G ++ + I +VLVY+V ++ V++ L +++
Sbjct: 64 IVTL-GKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLH 122
Query: 149 NKRGLM-VPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFKEL 206
G VP+V+VGNK +L + +V+ + +A W F+E SA+EN +F ++
Sbjct: 123 EGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLA-ESWGATFMESSARENQLTQGIFTKV 181
Query: 207 LAQ 209
+ +
Sbjct: 182 IQE 184
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL,
RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2a78_A*
Length = 187
Score = 156 bits (398), Expect = 2e-48
Identities = 59/180 (32%), Positives = 100/180 (55%), Gaps = 4/180 (2%)
Query: 32 GTESTSSSGTGVGLQKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYE 91
G+ S G G +V+++G VGKS++ QF+YD F+ Y+ T + +R +
Sbjct: 1 GSPGISGGGGGSQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV 60
Query: 92 LPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKR 151
L DG ++ +DILDT+G + A+R+ + + F+ V+++ + ++ D REQI+ +
Sbjct: 61 L-DGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVK 119
Query: 152 GLM-VPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQ 209
VP ++VGNK +LE K V E A+ A W +VE SAK N+ +VF +L+ +
Sbjct: 120 EDENVPFLLVGNKSDLEDKRQVSVEEAKNRA-EQWNVNYVETSAKTRANVDKVFFDLMRE 178
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 157 bits (398), Expect = 4e-48
Identities = 61/204 (29%), Positives = 104/204 (50%), Gaps = 16/204 (7%)
Query: 51 RVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQ 110
+V+++G VGKS++ QF+YD F+ Y+ T + +R + L DG ++ +DILDT+G
Sbjct: 16 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVL-DGEEVQIDILDTAGQED 74
Query: 111 FPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLM-VPIVVVGNKCELEFK 169
+ A+R+ + + F+ V+++ + ++ D REQI+ + VP ++VGNK +LE K
Sbjct: 75 YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 134
Query: 170 -DVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQAKVQYNLSPAVRRRRQSLP 228
V E A+ A W +VE SAK N+ +VF +L+ + +R R+
Sbjct: 135 RQVSVEEAKNRA-EQWNVNYVETSAKTRANVDKVFFDLMRE----------IRARKMEDS 183
Query: 229 NYIGTTGSASSKGRYMLKRNSCTV 252
G K R C +
Sbjct: 184 K--EKNGKKKRKSLAKRIRERCCI 205
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP
binding, GTP hydrolysis, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 196
Score = 156 bits (397), Expect = 5e-48
Identities = 61/202 (30%), Positives = 100/202 (49%), Gaps = 17/202 (8%)
Query: 29 HSLGTESTSSSGTGVGLQKDK-RRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHR 87
HS G + + + + K ++ + G A VGKS+++ +FL RFI Y T+E +R
Sbjct: 7 HSSGVDLGTENLYFQSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYR 66
Query: 88 GEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQI 147
+ + D ++++ILDT+G RE + + FVLVY + D +++ V L+ +
Sbjct: 67 HQATI-DDEVVSMEILDTAGQEDT-IQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNIL 124
Query: 148 VNKRGL-MVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENY-NIVQVFK 204
+ V +++VGNK +L+ V E E +A + C F ECSA NI ++F
Sbjct: 125 DEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLAT-ELACAFYECSACTGEGNITEIFY 183
Query: 205 ELLAQAKVQYNLSPAVRRRRQS 226
EL + VRRRR
Sbjct: 184 ELCRE----------VRRRRMV 195
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase,
signaling protein; HET: GDP; 1.50A {Saguinus oedipus}
SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A*
1zc4_A* 2kwi_A* 2ke5_A*
Length = 168
Score = 154 bits (393), Expect = 8e-48
Identities = 55/162 (33%), Positives = 95/162 (58%), Gaps = 4/162 (2%)
Query: 50 RRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAY 109
+V+++G VGKS++ QF+YD F+ Y+ T + +R + L DG ++ +DILDT+G
Sbjct: 5 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVL-DGEEVQIDILDTAGQE 63
Query: 110 QFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLM-VPIVVVGNKCELEF 168
+ A+R+ + + F+ V+++ + ++ D REQI+ + VP ++VGNK +LE
Sbjct: 64 DYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 123
Query: 169 K-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQ 209
K V E A+ A W +VE SAK N+ +VF +L+ +
Sbjct: 124 KRQVSVEEAKNRA-DQWNVNYVETSAKTRANVDKVFFDLMRE 164
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 154 bits (392), Expect = 2e-47
Identities = 47/190 (24%), Positives = 89/190 (46%), Gaps = 14/190 (7%)
Query: 29 HSLGTESTSSSGTGVGLQKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRG 88
HS G E+ G + + ++G GKS++ +FL RFIS Y +E+ +
Sbjct: 7 HSSGRENLYFQG------PLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSS 60
Query: 89 EYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQI- 147
E + D + L ++DT+ E ++ A AF++VY+VD ++D E +
Sbjct: 61 EETV-DHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLA 118
Query: 148 --VNKRGLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENY-NIVQVF 203
+ +P +++GNK ++ V + +A + C F E SA ++ ++ VF
Sbjct: 119 LHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAG-RFGCLFFEVSACLDFEHVQHVF 177
Query: 204 KELLAQAKVQ 213
E + +A+ +
Sbjct: 178 HEAVREARRE 187
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein;
HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A*
3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 153 bits (388), Expect = 9e-47
Identities = 51/181 (28%), Positives = 93/181 (51%), Gaps = 5/181 (2%)
Query: 32 GTESTSSSGTGVGLQKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYE 91
G + ++ ++VV+G VGKS++ QF F+ Y T+E+ + E
Sbjct: 1 GPLGSMATSAVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTE 60
Query: 92 LPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKR 151
+ D LD+LDT+G +F AMRE + T D F++VY+V D ++++ V + I+ +
Sbjct: 61 I-DNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVK 119
Query: 152 GLM-VPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKEN-YNIVQVFKELLA 208
P+++V NK +L V R+ + +A + ++E SAK+ N+ + F +L+
Sbjct: 120 DRESFPMILVANKVDLMHLRKVTRDQGKEMA-TKYNIPYIETSAKDPPLNVDKTFHDLVR 178
Query: 209 Q 209
Sbjct: 179 V 179
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and
GEM like GTP protein 1, structural genomics; HET: GDP;
2.50A {Homo sapiens}
Length = 175
Score = 149 bits (378), Expect = 2e-45
Identities = 49/179 (27%), Positives = 90/179 (50%), Gaps = 16/179 (8%)
Query: 51 RVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQ 110
RVV++G VGK+S+ S F + +++ E+++ + DG TL ++DT A +
Sbjct: 6 RVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTV-DGEDTTLVVVDTWEAEK 64
Query: 111 FP--AMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGL-MVPIVVVGNKCELE 167
+E + A+V+VY++ D +++ +LR Q+ VPI++VGNK +L
Sbjct: 65 LDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLA 124
Query: 168 FK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQAKVQYNLSPAVRRRRQ 225
+V E A + C F+E SA +N+ ++F+ ++ Q +R RR+
Sbjct: 125 RCREVSVEEGRACA-VVFDCKFIETSATLQHNVAELFEGVVRQ----------LRLRRR 172
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A*
2gjs_A* 2dpx_A*
Length = 166
Score = 147 bits (373), Expect = 8e-45
Identities = 44/176 (25%), Positives = 81/176 (46%), Gaps = 15/176 (8%)
Query: 51 RVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQ 110
+V+++G VGKS++ F E + + DG + +L + D
Sbjct: 4 KVLLLGAPGVGKSALARIFG-GVEDGPEAEAAGHTYDRSIVV-DGEEASLMVYDIWEQDG 61
Query: 111 FPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGL-MVPIVVVGNKCELEFK 169
+ ++ DA+V+VY+V D +++ +LR Q+ R VPI++VGNK +L
Sbjct: 62 GRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRS 121
Query: 170 -DVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQAKVQYNLSPAVRRRR 224
+V + A + C F+E SA ++N+ +F+ ++ Q +R RR
Sbjct: 122 REVSVDEGRACA-VVFDCKFIETSAALHHNVQALFEGVVRQ----------IRLRR 166
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics
consortium, SGC, GDP, membrane, nucleotide-binding,
nucleotide binding protein; HET: GDP; 1.82A {Homo
sapiens}
Length = 195
Score = 145 bits (367), Expect = 1e-43
Identities = 49/206 (23%), Positives = 93/206 (45%), Gaps = 20/206 (9%)
Query: 25 RLRLHSLGTESTSSSGTGVGLQKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETV-E 83
HS G E+ G G+ K V+++G + VGKS++ F + S ++ E
Sbjct: 3 HHHHHSSGRENLYFQGQKDGIFK----VMLVGESGVGKSTLAGTFGGLQGDSAHEPENPE 58
Query: 84 ELHRGEYELPDGAQLTLDILDTSGAYQFPA-MRELSISTADAFVLVYAVDDASTWDVVKD 142
+ + + D ++TL + D +R+ + T DAF++V++V D ++ V +
Sbjct: 59 DTYERRIMV-DKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPE 117
Query: 143 LREQIVNKRGL-MVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIV 200
++ R +P+++VGNK +L +V E +A C +E SA ++N
Sbjct: 118 TLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLA-GTLSCKHIETSAALHHNTR 176
Query: 201 QVFKELLAQAKVQYNLSPAVRRRRQS 226
++F+ + Q +R RR
Sbjct: 177 ELFEGAVRQ----------IRLRRGR 192
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK
family, structur genomics, structural genomics
consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo
sapiens} SCOP: c.37.1.8
Length = 211
Score = 142 bits (361), Expect = 2e-42
Identities = 56/211 (26%), Positives = 102/211 (48%), Gaps = 25/211 (11%)
Query: 23 CERLRLHSLGTESTSSSGTGVGLQKDKRRVVVMGGARVGKSSIISQFL--YDRFISRYKE 80
E L S+ T+S SS +G + VV++G VGKS++ + F +D S +
Sbjct: 15 TENLYFQSMSTDSVISSESGNTYYR----VVLIGEQGVGKSTLANIFAGVHDSMDSDCEV 70
Query: 81 TVEELHRGEYELPDGAQLT---LDILDTSGAYQFPAMRELSISTADAFVLVYAVDDASTW 137
E+ + + DG T LD+ + G ++ + + + DA+++VY++ D +++
Sbjct: 71 LGEDTYERTLMV-DGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASF 127
Query: 138 DVVKDLREQIVNKRGLM-VPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKE 195
+ +LR Q+ R +PI++VGNK +L +V A + C F+E SA
Sbjct: 128 EKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACA-VVFDCKFIETSAAV 186
Query: 196 NYNIVQVFKELLAQAKVQYNLSPAVRRRRQS 226
+N+ ++F+ ++ Q VR RR S
Sbjct: 187 QHNVKELFEGIVRQ----------VRLRRDS 207
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 141 bits (357), Expect = 4e-42
Identities = 34/170 (20%), Positives = 73/170 (42%), Gaps = 11/170 (6%)
Query: 46 QKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDT 105
Q + +V ++G GKS+++ ++L ++ + E + DG L I D
Sbjct: 17 QGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGRFKKEIVV-DGQSYLLLIRDE 74
Query: 106 SGAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLM-VPIVVVGNKC 164
G + DA V V++++D ++ V + ++ + R VP+V+VG +
Sbjct: 75 GGPPELQFAA-----WVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQD 129
Query: 165 ELEFKDVR---REIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQAK 211
+ + R A ++ +C + E A N+ +VF+++ +
Sbjct: 130 AISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVV 179
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.76A {Mus musculus}
Length = 169
Score = 139 bits (354), Expect = 6e-42
Identities = 40/178 (22%), Positives = 84/178 (47%), Gaps = 16/178 (8%)
Query: 51 RVVVMGGARVGKSSIISQFLYDRFISRYKETV-EELHRGEYELPDGAQLTLDILDTSGAY 109
+V+++G + VGKS++ F + ++ E+ + + D ++TL + D
Sbjct: 4 KVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMV-DKEEVTLIVYDIWEQG 62
Query: 110 QFPA-MRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGL-MVPIVVVGNKCELE 167
+++ + T DAF++V++V D ++ V + ++ R +P+++VGNK +L
Sbjct: 63 DAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA 122
Query: 168 FK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQAKVQYNLSPAVRRRR 224
+V E +A C +E SA ++N ++F+ + Q +R RR
Sbjct: 123 RSREVSLEEGRHLA-GTLSCKHIETSAALHHNTRELFEGAVRQ----------IRLRR 169
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding,
polymorphism, nucleotide-binding, alternative splicing,
protein transport; HET: CAF; 1.5A {Homo sapiens} PDB:
2bmj_A
Length = 178
Score = 132 bits (335), Expect = 6e-39
Identities = 41/167 (24%), Positives = 76/167 (45%), Gaps = 13/167 (7%)
Query: 51 RVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQ 110
R+ V+G AR GKSS+I +FL + ++T E ++ E + DG + I + +GA
Sbjct: 9 RLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYKKEMLV-DGQTHLVLIREEAGAPD 66
Query: 111 FPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRG-----LMVPIVVVGNKCE 165
ADA + V++++D +++ V L Q+ + RG L + +V ++
Sbjct: 67 AKFSG-----WADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS 121
Query: 166 LEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQAK 211
V A + +C + E A N+ +VF+E+ +
Sbjct: 122 ASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVV 168
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase,
conformational change, cysteine-modified, G-protein
hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B*
2ht6_A*
Length = 192
Score = 132 bits (333), Expect = 2e-38
Identities = 43/183 (23%), Positives = 88/183 (48%), Gaps = 11/183 (6%)
Query: 51 RVVVMGGARVGKSSIISQFLYDRFISRYKE--TVEELHRGEYELPDGAQLT---LDILDT 105
RVV++G VGKS++ + F E+ + + DG T LD+ +
Sbjct: 8 RVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMV-DGESATIILLDMWEN 66
Query: 106 SGAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGL-MVPIVVVGNKC 164
G ++ + + + DA+++VY++ D ++++ +LR Q+ R +PI++VGNK
Sbjct: 67 KGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKS 124
Query: 165 ELE-FKDVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQAKVQYNLSPAVRRR 223
+L ++V A + F+E SA +N+ ++F+ ++ Q +++ + RR
Sbjct: 125 DLVRXREVSVSEGRAXA-VVFDXKFIETSAAVQHNVKELFEGIVRQVRLRRDSKEKNERR 183
Query: 224 RQS 226
Sbjct: 184 LAY 186
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics,
structural genomics consortium,; HET: GDP; 1.73A {Homo
sapiens}
Length = 201
Score = 107 bits (270), Expect = 4e-29
Identities = 44/192 (22%), Positives = 82/192 (42%), Gaps = 20/192 (10%)
Query: 30 SLGTESTSSSGTGVGLQKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGE 89
S+G G G + + V++G VGK+S++ + + + + Y T +
Sbjct: 1 SMGPGEPGGRGRAGGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAV 60
Query: 90 YELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVN 149
+ DG + L + DT+G +F +R L + D F+L ++V S++ V + +
Sbjct: 61 VSV-DGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIR 119
Query: 150 KRGLMVPIVVVGNKCELE-------------FKDVRREIAETIALYDWQCG---FVECSA 193
PI++VG + +L K V E A+ +A + ++ECSA
Sbjct: 120 CHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLA---EEIKAASYIECSA 176
Query: 194 KENYNIVQVFKE 205
N+ +VF
Sbjct: 177 LTQKNLKEVFDA 188
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP;
1.78A {Arabidopsis thaliana}
Length = 212
Score = 107 bits (269), Expect = 8e-29
Identities = 45/184 (24%), Positives = 82/184 (44%), Gaps = 11/184 (5%)
Query: 52 VVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQF 111
V +G VGK+ ++ + ++F + Y TV + + DG + L + DT+G +
Sbjct: 12 CVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAV-DGQIVNLGLWDTAGQEDY 70
Query: 112 PAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEF--- 168
+R LS AD FVL +++ ++++ V + + VPIV+VG K +L
Sbjct: 71 SRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKG 130
Query: 169 ------KDVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQAKVQYNLSPAVRR 222
+ E + ++ECS+K N+ VF + + +Q V R
Sbjct: 131 YLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVF-DTAIKVVLQPPRRKEVPR 189
Query: 223 RRQS 226
RR++
Sbjct: 190 RRKN 193
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase,
GTP binding, protein binding, signali protein; HET: GNP;
2.30A {Homo sapiens}
Length = 204
Score = 102 bits (255), Expect = 6e-27
Identities = 43/193 (22%), Positives = 78/193 (40%), Gaps = 20/193 (10%)
Query: 29 HSLGTESTSSSGTGVGLQKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRG 88
HS G S + Q + VV+G VGK+ ++ + + F Y TV + +
Sbjct: 10 HSSGLVPRGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA 69
Query: 89 EYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIV 148
+ DG + L + DT+G + +R LS D F++ +++ ++++ V+ V
Sbjct: 70 NVMV-DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV 128
Query: 149 NKRGLMVPIVVVGNKCELE-------------FKDVRREIAETIALYDWQCG---FVECS 192
PI++VG K +L + +A + G ++ECS
Sbjct: 129 RHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMA---KEIGAVKYLECS 185
Query: 193 AKENYNIVQVFKE 205
A + VF E
Sbjct: 186 ALTQRGLKTVFDE 198
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport;
HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB:
1s8f_A* 1yzl_A* 2ocb_A*
Length = 177
Score = 97.6 bits (244), Expect = 2e-25
Identities = 45/175 (25%), Positives = 90/175 (51%), Gaps = 18/175 (10%)
Query: 52 VVVMGGARVGKSSIISQFLYDRFISRYKET--VEELHRGEYELPDGAQLTLDILDTSGAY 109
V+++G VGKSS++++++ ++F ++ T VE L++ + E+ DG +T+ I DT+G
Sbjct: 10 VILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNK-DLEV-DGHFVTMQIWDTAGQE 67
Query: 110 QFPAMRELSIST-----ADAFVLVYAVDDASTWDVV----KDLREQIVNKRGLMVPIVVV 160
+F S+ T +D +L ++VDD+ ++ + K+ K P V++
Sbjct: 68 RF-----RSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVIL 122
Query: 161 GNKCELEFKDVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQAKVQYN 215
GNK ++ + V E A+ + + E SAK+ N+ F+E + + +
Sbjct: 123 GNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLATED 177
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport;
HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB:
1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Length = 207
Score = 97.7 bits (244), Expect = 4e-25
Identities = 53/205 (25%), Positives = 92/205 (44%), Gaps = 16/205 (7%)
Query: 52 VVVMGGARVGKSSIISQFLYDRFISRYKET--VEELHRGEYELPDGAQLTLDILDTSGAY 109
V+++G + VGK+S+++Q++ +F ++YK T + L + E + D +T+ I DT+G
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK-EVMV-DDRLVTMQIWDTAGQE 68
Query: 110 QFPAMRELSISTADAFVLVYAVDDASTWDVV----KDLREQIVNKRGLMVPIVVVGNKCE 165
+F ++ AD VLV+ V +T+ + + Q + P VV+GNK +
Sbjct: 69 RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 128
Query: 166 LEFKDVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQAKVQYNLSPAVRRRRQ 225
LE + V + A+ + E SAKE N+ Q F+ + A Q
Sbjct: 129 LENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVEL----YN 184
Query: 226 SLPNYIGTTGSASSKGRYMLKRNSC 250
P I + +K SC
Sbjct: 185 EFPEPIKLDKNERAKA----SAESC 205
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis,
YPT/RAB protein, endocytosis, hydrolase,
endocytosis/exocytosis complex; HET: GDP; 1.35A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Length = 182
Score = 95.0 bits (237), Expect = 2e-24
Identities = 43/168 (25%), Positives = 80/168 (47%), Gaps = 9/168 (5%)
Query: 52 VVVMGGARVGKSSIISQFLYDRFISRYKET--VEELHRGEYELPDGAQLTLDILDTSGAY 109
V+++G + VGK+S++ +++ D++ +YK T + L + E + T+ + DT+G
Sbjct: 11 VIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTK-EVTVDGDKVATMQVWDTAGQE 69
Query: 110 QFPAMRELSISTADAFVLVYAVDDASTWDVV----KDLREQIVNKRGLMVPIVVVGNKCE 165
+F ++ AD VLVY V +AS+++ + + P V++GNK +
Sbjct: 70 RFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKID 129
Query: 166 LE--FKDVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQAK 211
E K V + A+ +A SAK N+ F+E+ A
Sbjct: 130 AEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSAL 177
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding,
GTP-binding, signaling Pro lipoprotein, prenylation;
HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B*
Length = 194
Score = 93.6 bits (233), Expect = 9e-24
Identities = 39/180 (21%), Positives = 81/180 (45%), Gaps = 5/180 (2%)
Query: 30 SLGTESTSSSGTGVGLQKDKR-RVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRG 88
++ S ++G G K ++VV+G VGK+ ++ F + Y TV E
Sbjct: 3 AMLAFSDMNTGAGKIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH 62
Query: 89 EYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIV 148
+ + L + DT+G ++ +R LS + +D +L +AV++ +++D + E +
Sbjct: 63 VMKY-KNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEI 121
Query: 149 NKRGLMVPIVVVGNKCEL---EFKDVRREIAETIALYDWQCGFVECSAKENYNIVQVFKE 205
V+VG K +L DV ++ + + ++E S+ + +VF++
Sbjct: 122 KHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEK 181
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm,
lipoprotein, membrane, methylation, nucleotide-binding,
prenylation, ----; HET: GDP; 1.53A {Arabidopsis
thaliana} PDB: 2nty_C* 2wbl_C
Length = 182
Score = 92.4 bits (230), Expect = 2e-23
Identities = 40/167 (23%), Positives = 73/167 (43%), Gaps = 16/167 (9%)
Query: 52 VVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQF 111
V +G VGK+ ++ + + F + Y TV + + +GA + L + DT+G +
Sbjct: 11 CVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV-NGATVNLGLWDTAGQEDY 69
Query: 112 PAMRELSISTADAFVLVYAVDDASTWDVVKD--LREQIVNKRGLMVPIVVVGNKCELE-- 167
+R LS AD F+L +++ ++++ V + E + VPIV+VG K +L
Sbjct: 70 NRLRPLSYRGADVFILAFSLISKASYENVSKKWIPE--LKHYAPGVPIVLVGTKLDLRDD 127
Query: 168 ---------FKDVRREIAETIALYDWQCGFVECSAKENYNIVQVFKE 205
+ E + ++ECS+K N+ VF
Sbjct: 128 KQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDA 174
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta,
hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Length = 194
Score = 92.6 bits (230), Expect = 3e-23
Identities = 44/187 (23%), Positives = 79/187 (42%), Gaps = 14/187 (7%)
Query: 32 GTESTSSSGTGVGLQKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYE 91
G+ S G + VV+G VGK+ ++ + D F Y TV + +
Sbjct: 1 GSPGAGRSSMAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVT 60
Query: 92 LPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKR 151
+ G Q L + DT+G + +R LS D F++ ++V + +++ VK+ + +
Sbjct: 61 V-GGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY 119
Query: 152 GLMVPIVVVGNKCELE-------------FKDVRREIAETIALYDWQCGFVECSAKENYN 198
VP +++G + +L K + E + +A C +VECSA
Sbjct: 120 APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKG 179
Query: 199 IVQVFKE 205
+ VF E
Sbjct: 180 LKTVFDE 186
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP
hydrolysis, structural genomics, structural genomics
consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP:
c.37.1.8
Length = 207
Score = 91.7 bits (228), Expect = 8e-23
Identities = 50/190 (26%), Positives = 88/190 (46%), Gaps = 16/190 (8%)
Query: 29 HSLGTESTSSSGTGVGLQKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRG 88
HS G + + + + + K +VV+G GK+ ++ F D F Y TV E +
Sbjct: 7 HSSGVDLGTENLYFQSMIRKK--LVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVA 64
Query: 89 EYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIV 148
+ E+ DG Q+ L + DT+G + +R LS D ++ ++VD + + + + V
Sbjct: 65 DIEV-DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEV 123
Query: 149 NKRGLMVPIVVVGNKCEL-EFKDVRREIAET----IALYDWQ--------CGFVECSAKE 195
VPI++V NK +L + VR E+A + D + ++ECSAK
Sbjct: 124 KHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKT 183
Query: 196 NYNIVQVFKE 205
+ +VF+
Sbjct: 184 KEGVREVFET 193
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane,
prenylation, hydrolase, nucleotide-binding, methylation,
lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo
sapiens}
Length = 214
Score = 90.6 bits (225), Expect = 2e-22
Identities = 51/197 (25%), Positives = 82/197 (41%), Gaps = 27/197 (13%)
Query: 30 SLGTESTSSSGTGVGLQKDKRR---VVVMGGARVGKSSIISQFLYDRFISRYKETVEELH 86
LGTE+ R VV++G GK+S++ F F Y TV E +
Sbjct: 12 DLGTENLYFQSMAGEEAPPGVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY 71
Query: 87 RGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKD--LR 144
++ G + L I DT+G + +R L A +L + V +++D + +
Sbjct: 72 MVNLQV-KGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYP 130
Query: 145 EQIVNKRGLMVPIVVVGNKCELE-------------FKDVRREIAETIALYDWQCG---F 188
E VN VPI+VVG K +L + V + +A G +
Sbjct: 131 E--VNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMA---RSVGAVAY 185
Query: 189 VECSAKENYNIVQVFKE 205
+ECSA+ + N+ VF+E
Sbjct: 186 LECSARLHDNVHAVFQE 202
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein,
signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB:
2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A*
3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B*
1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Length = 201
Score = 89.0 bits (221), Expect = 6e-22
Identities = 50/192 (26%), Positives = 93/192 (48%), Gaps = 23/192 (11%)
Query: 29 HSLGTESTSSSGTGVGLQKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRG 88
HS G S + ++++V++G GK+ ++ F D+F Y TV E +
Sbjct: 10 HSSGLVPRGSH-----MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIA 64
Query: 89 EYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKD--LREQ 146
+ E+ DG Q+ L + DT+G + +R LS D ++ +++D + + + + E
Sbjct: 65 DIEV-DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE- 122
Query: 147 IVNKRGLMVPIVVVGNKCEL-EFKDVRREIAET----IALYDWQ--------CGFVECSA 193
V VPI++VGNK +L + + RRE+A+ + + + G++ECSA
Sbjct: 123 -VKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSA 181
Query: 194 KENYNIVQVFKE 205
K + +VF+
Sbjct: 182 KTKEGVREVFEM 193
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation,
cytoplasm, HOST- virus interaction, nucleotide-binding,
nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens}
PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A*
1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C*
3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C*
...
Length = 221
Score = 88.9 bits (221), Expect = 1e-21
Identities = 41/181 (22%), Positives = 86/181 (47%), Gaps = 19/181 (10%)
Query: 52 VVVMGGARVGKSSIISQFLYDRFISRYKETVE-ELHRGEYELPDGAQLTLDILDTSGAYQ 110
+V++G GK++ + + L F +Y T+ E+H + + + ++ DT+G +
Sbjct: 18 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT-NRGPIKFNVWDTAGQEK 76
Query: 111 FPAMRELSISTADAFVLVYAVDDASTWDVV----KDLREQIVNKRGLMVPIVVVGNKCEL 166
F +R+ A ++++ V T+ V +DL N +PIV+ GNK ++
Sbjct: 77 FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN-----IPIVLCGNKVDI 131
Query: 167 EFKDVRREIAETIALYDWQ-CGFVECSAKENYNIVQVF----KELLAQAKVQYNLSPAVR 221
+ R+ A++I + + + + SAK NYN + F ++L+ +++ PA+
Sbjct: 132 K---DRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALA 188
Query: 222 R 222
Sbjct: 189 P 189
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking,
protein transport; HET: GDP; 1.90A {Mus musculus} SCOP:
c.37.1.8 PDB: 1z22_A*
Length = 168
Score = 87.2 bits (217), Expect = 2e-21
Identities = 50/170 (29%), Positives = 88/170 (51%), Gaps = 17/170 (10%)
Query: 52 VVVMGGARVGKSSIISQFLYDRFISRYKET--VEELHRGEYELPDGAQLTLDILDTSGAY 109
+VV+G VGKSS+I ++ F YK+T V+ L R + ++ + + L + DT+G
Sbjct: 8 MVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLER-QIQV-NDEDVRLMLWDTAGQE 65
Query: 110 QFPAMRELSIST-----ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKC 164
+F +I+ A A VLV++ D +++ + RE++V + G +P +V NK
Sbjct: 66 EF---D--AITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-DIPTALVQNKI 119
Query: 165 ELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQAKVQ 213
+L ++ E AE +A + F S KE+ N+ +VFK L + +
Sbjct: 120 DLLDDSCIKNEEAEGLA-KRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQK 168
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon
cuniculi}
Length = 218
Score = 87.0 bits (216), Expect = 4e-21
Identities = 35/169 (20%), Positives = 70/169 (41%), Gaps = 3/169 (1%)
Query: 52 VVVMGGARVGKSSIISQFLYDRFISRYKETV-EELHRGEYELPDGAQLTLDILDTSGAYQ 110
+ ++G VGK++ I++ L RF Y TV H + G + ++ DT+G +
Sbjct: 14 ICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEK 73
Query: 111 FPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELE-FK 169
++++ A +L + V T + ++ G PIVV NK +++ +
Sbjct: 74 KAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQ 133
Query: 170 DVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQAKVQYNLSP 218
+ +++ + + E SAK +N F L + +L
Sbjct: 134 KISKKLVMEVL-KGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDLIF 181
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling
protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8
PDB: 2v55_B*
Length = 184
Score = 84.0 bits (208), Expect = 3e-20
Identities = 45/179 (25%), Positives = 81/179 (45%), Gaps = 25/179 (13%)
Query: 46 QKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDT 105
Q K ++VV+G ++ GK++++ F D F Y TV E + +E+ D ++ L + DT
Sbjct: 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEI-DTQRIELSLWDT 62
Query: 106 SGAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKD--LREQIVNKRGLMVPIVVVGNK 163
SG+ + +R LS +DA ++ + + T D V E + + +++VG K
Sbjct: 63 SGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGE--IQEFCPNTKMLLVGCK 120
Query: 164 CEL-------------EFKDVRREIAETIALYDWQCG---FVECSAKENYNIV-QVFKE 205
+L V + +A Q G ++ECSA ++ N V +F
Sbjct: 121 SDLRTDVSTLVELSNHRQTPVSYDQGANMA---KQIGAATYIECSALQSENSVRDIFHV 176
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET:
G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Length = 178
Score = 83.4 bits (207), Expect = 4e-20
Identities = 38/165 (23%), Positives = 74/165 (44%), Gaps = 8/165 (4%)
Query: 51 RVVVMGGARVGKSSIISQFLYDRFISRYKET--VEELHRGEYELPDGAQLTLDILDTSGA 108
++VV+G GK+S+ + F + F +YK+T ++ R LP +TL I D G
Sbjct: 8 KIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLR-RITLPGNLNVTLQIWDIGGQ 66
Query: 109 YQFPAMRELSISTADAFVLVYAVDDASTWDVVKD-LRE--QIVNKRGLMVPIVVVGNKCE 165
M + I A +LVY + + +++ ++D ++ + + +VGNK +
Sbjct: 67 TIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKID 126
Query: 166 LEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQ 209
LE ++ E + SAK ++ F+++ A+
Sbjct: 127 LEHMRTIKPEKHLRFC-QENGFSSHFVSAKTGDSVFLCFQKVAAE 170
>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB
GTPase, ARL GTPase, golgin, RAB effector, clAsp protein;
HET: GTP; 3.00A {Homo sapiens}
Length = 211
Score = 84.3 bits (209), Expect = 5e-20
Identities = 51/193 (26%), Positives = 91/193 (47%), Gaps = 6/193 (3%)
Query: 52 VVVMGGARVGKSSIISQFLYDRFISRYKET--VEELHRGEYELPDGAQLTLDILDTSGAY 109
+V +G VGK+S+I++F+YD F + Y+ T ++ L + Y + + L + DT+G
Sbjct: 19 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYL--EDRTVRLQLWDTAGLE 76
Query: 110 QFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK 169
+F ++ I + V+VY + + +++ + + +RG V I++VGNK +L K
Sbjct: 77 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 136
Query: 170 -DVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQAKVQYNLSPAVRRRRQSLP 228
V E E A + F+E SAK YN+ Q+F+ + A + R +
Sbjct: 137 RQVSIEEGERKA-KELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDMIDIK 195
Query: 229 NYIGTTGSASSKG 241
S G
Sbjct: 196 LEKPQEQPVSEGG 208
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase,
signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP:
c.37.1.8
Length = 205
Score = 82.9 bits (205), Expect = 1e-19
Identities = 49/196 (25%), Positives = 85/196 (43%), Gaps = 27/196 (13%)
Query: 29 HSLGTESTSSSGTGVGLQKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRG 88
HS G S Q K ++VV+G ++ GK++++ F D F Y TV E +
Sbjct: 10 HSSGLVPRGSHMDPN--QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTA 67
Query: 89 EYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKD--LREQ 146
+E+ D ++ L + DTSG+ + +R LS +DA ++ + + T D V E
Sbjct: 68 SFEI-DTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGE- 125
Query: 147 IVNKRGLMVPIVVVGNKCEL-------------EFKDVRREIAETIALYDWQCG---FVE 190
+ + +++VG K +L V + +A Q G ++E
Sbjct: 126 -IQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMA---KQIGAATYIE 181
Query: 191 CSAKENYNIV-QVFKE 205
CSA ++ N V +F
Sbjct: 182 CSALQSENSVRDIFHV 197
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein,
endocytosis/exocytosis complex; HET: GDP; 1.80A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A*
2ocy_C 2eqb_A
Length = 170
Score = 81.4 bits (202), Expect = 2e-19
Identities = 43/169 (25%), Positives = 87/169 (51%), Gaps = 21/169 (12%)
Query: 51 RVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRG-EYELP----DGAQLTLDILDT 105
+++++G + VGKS ++ +F+ D+F + T+ G ++++ +G ++ L I DT
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTI-----GIDFKIKTVDINGKKVKLQIWDT 59
Query: 106 SGAYQFPAMRELSIST-----ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVV 160
+G +F R +I+T A +LVY + D T+ +K + + +++V
Sbjct: 60 AGQERF---R--TITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLV 114
Query: 161 GNKCELEFKDVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQ 209
GNK ++E + V + E +A + F+E SAK + N+ ++F L
Sbjct: 115 GNKSDMETRVVTADQGEALA-KELGIPFIESSAKNDDNVNEIFFTLAKL 162
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular
transport, cytoplasm, cytoplasmic vesicle, exocytosis,
GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 213
Score = 82.8 bits (205), Expect = 2e-19
Identities = 47/202 (23%), Positives = 95/202 (47%), Gaps = 27/202 (13%)
Query: 52 VVVMGGARVGKSSIISQFLYDRFISRYKET--VE------ELHRGEYELPDGAQLTLDIL 103
++++G + VGKS ++ +F+ D+F + T ++ ++ +G ++ L +
Sbjct: 23 ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDI--------NGKKVKLQLW 74
Query: 104 DTSGAYQFPAMRELSIST-----ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIV 158
DT+G +F R +I+T A +LVY V D T+ +K + + ++
Sbjct: 75 DTAGQERF---R--TITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLL 129
Query: 159 VVGNKCELEFKDVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQAKVQYNLSP 218
+VGNK ++E + V + E +A + F+E SAK + N+ ++F L + + + +
Sbjct: 130 LVGNKSDMETRVVTADQGEALA-KELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDSNK 188
Query: 219 AVRRRRQSLPNYIGTTGSASSK 240
V N +GS +S
Sbjct: 189 LVGVGNGKEGNISINSGSGNSS 210
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP
binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB:
3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Length = 179
Score = 81.1 bits (201), Expect = 3e-19
Identities = 48/161 (29%), Positives = 86/161 (53%), Gaps = 6/161 (3%)
Query: 52 VVVMGGARVGKSSIISQFLYDRFISRYKET--VEELHRGEYELPDGAQLTLDILDTSGAY 109
+V +G VGK+S+I++F+YD F + Y+ T ++ L + Y + + L + DT+G
Sbjct: 17 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMY--LEDRTVRLQLWDTAGQE 74
Query: 110 QFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK 169
+F ++ I + V+VY + + +++ + + +RG V I++VGNK +L K
Sbjct: 75 RFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK 134
Query: 170 -DVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQ 209
V E E A + F+E SAK YN+ Q+F+ + A
Sbjct: 135 RQVSTEEGERKA-KELNVMFIETSAKAGYNVKQLFRRVAAA 174
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super
family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8
PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D*
2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A*
3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Length = 186
Score = 81.3 bits (201), Expect = 4e-19
Identities = 37/176 (21%), Positives = 72/176 (40%), Gaps = 20/176 (11%)
Query: 46 QKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDT 105
+ VV+G VGK+ ++ + + F Y TV + + + DG + L + DT
Sbjct: 2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDT 60
Query: 106 SGAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCE 165
+G + +R LS D ++ +++ ++++ V+ V PI++VG K +
Sbjct: 61 AGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 120
Query: 166 L-------------EFKDVRREIAETIALYDWQCG---FVECSAKENYNIVQVFKE 205
L + + +A + G ++ECSA + VF E
Sbjct: 121 LRDDKDTIEKLKEKKLTPITYPQGLAMA---KEIGAVKYLECSALTQRGLKTVFDE 173
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin,
small GTPase, structural genomic consortium, SGC; HET:
GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Length = 214
Score = 80.3 bits (198), Expect = 1e-18
Identities = 41/194 (21%), Positives = 77/194 (39%), Gaps = 21/194 (10%)
Query: 29 HSLGTESTSSSGTGVGLQKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRG 88
HS G E+ G + ++V++G + GK++++ D + Y TV E +
Sbjct: 7 HSSGRENLYFQGRAPQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTA 66
Query: 89 EYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIV 148
E + ++ L + DTSG+ + +R L S +DA +L + + T D +
Sbjct: 67 CLET-EEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEI 125
Query: 149 NKRGLMVPIVVVGNKCELE-------------FKDVRREIAETIALYDWQCG---FVECS 192
++++G K +L + E IA Q G ++E S
Sbjct: 126 LDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIA---KQLGAEIYLEGS 182
Query: 193 AK-ENYNIVQVFKE 205
A +I +F+
Sbjct: 183 AFTSEKSIHSIFRT 196
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase,
glucorticoid receptor, structural genomics consortium,
SGC, alternative splicing; HET: GNP; 1.80A {Homo
sapiens}
Length = 255
Score = 80.4 bits (198), Expect = 3e-18
Identities = 33/154 (21%), Positives = 56/154 (36%), Gaps = 11/154 (7%)
Query: 67 SQFLYDRFISRYKETVEELHR---GEYELPDGAQLTLDILDTSG---AYQFPAMRELSIS 120
++F+ D+ ++ T + + +L +L D G ++ M + +
Sbjct: 103 TEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLL 162
Query: 121 TADAFVLVYAV--DDASTWDVVKDLREQIV-NKRGLMVPIVVVGNKCELEFKDVRREIAE 177
D F+L V +D + PIVVV KC+ + R+ A
Sbjct: 163 V-DGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRD-AH 220
Query: 178 TIALYDWQCGFVECSAKENYNIVQVFKELLAQAK 211
T AL VE SA+ N N+ F L+
Sbjct: 221 TFALSKKNLQVVETSARSNVNVDLAFSTLVQLID 254
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GNP; 1.32A {Homo sapiens}
SCOP: c.37.1.8
Length = 195
Score = 78.8 bits (195), Expect = 3e-18
Identities = 44/173 (25%), Positives = 76/173 (43%), Gaps = 28/173 (16%)
Query: 51 RVVVMGGARVGKSSIISQFLYDRFISRYKET--VE------ELHRGEYELPDGAQLTLDI 102
+++++G + VGKSS++ +F D F T V+ + DG + L I
Sbjct: 17 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISV--------DGNKAKLAI 68
Query: 103 LDTSGAYQFPAMRELSIST-----ADAFVLVYAVDDASTWDVVKD-LREQIVNKRGLMVP 156
DT+G +F R +++ A +LVY V T+ + + L E +
Sbjct: 69 WDTAGQERF---R--TLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIV 123
Query: 157 IVVVGNKCELEFKDVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQ 209
++VGNK + E ++V R A F+E SAK + F+EL+ +
Sbjct: 124 NMLVGNKIDKENREVDRNEGLKFA-RKHSMLFIEASAKTCDGVQCAFEELVEK 175
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens}
SCOP: c.37.1.8
Length = 192
Score = 78.8 bits (195), Expect = 4e-18
Identities = 43/184 (23%), Positives = 76/184 (41%), Gaps = 16/184 (8%)
Query: 34 ESTSSSGTGVGLQKDKRRVVVMGGARVGKSSIISQFLYDRFISRYKET--VEELHRGEYE 91
SS G + +V ++G VGKSSI+ +F+ D F T + +
Sbjct: 8 HHHSSGLVPRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTK-TVP 66
Query: 92 LPDGAQLTLDILDTSGAYQFPAMRELSIST-----ADAFVLVYAVDDASTWDVVKDLREQ 146
I DT+G +F S++ + A V+VY + ++ +K ++
Sbjct: 67 C-GNELHKFLIWDTAGQERF---H--SLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKE 120
Query: 147 IVNKRGLMVPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFKE 205
+ + + + GNKC+L +V + A+ A VE SAK NI ++F+
Sbjct: 121 LKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYA-ESIGAIVVETSAKNAINIEELFQG 179
Query: 206 LLAQ 209
+ Q
Sbjct: 180 ISRQ 183
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural
genomics, SGC, structural genomics consortium, signaling
protein; HET: GDP; 2.15A {Homo sapiens}
Length = 199
Score = 78.1 bits (193), Expect = 7e-18
Identities = 48/181 (26%), Positives = 80/181 (44%), Gaps = 34/181 (18%)
Query: 51 RVVVMGGARVGKSSIISQFLYDRFISRYKET--VE------ELHRGEYELPDGAQLTLDI 102
++V+ G A VGKSS + + + F T V+ + DG + L +
Sbjct: 30 KIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIV--------DGERTVLQL 81
Query: 103 LDTSGAYQFPAMRELSIST-----ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPI 157
DT+G +F R SI+ AD +L+Y V ++ +++ + I + VPI
Sbjct: 82 WDTAGQERF---R--SIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPI 136
Query: 158 VVVGNKCELEF-------KDVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQA 210
++VGNK ++ K V E +A+ + F E SAK+ NIV+ L +
Sbjct: 137 MLVGNKADIRDTAATEGQKCVPGHFGEKLAM-TYGALFCETSAKDGSNIVEAVLHLAREV 195
Query: 211 K 211
K
Sbjct: 196 K 196
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Length = 189
Score = 77.6 bits (192), Expect = 8e-18
Identities = 49/170 (28%), Positives = 87/170 (51%), Gaps = 22/170 (12%)
Query: 51 RVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRG-EYELP----DGAQLTLDILDT 105
+++++G + VGK+S + ++ D F + TV G ++++ ++ L I DT
Sbjct: 24 KLLLIGNSSVGKTSFLFRYADDSFTPAFVSTV-----GIDFKVKTVYRHDKRIKLQIWDT 78
Query: 106 SGAYQFPAMRELSIST-----ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVV 160
+G ++ R +I+T A F+L+Y + + ++ V+D QI +++V
Sbjct: 79 AGQERY---R--TITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILV 133
Query: 161 GNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQ 209
GNKC+LE + V E +A D F E SAKEN N+ QVF+ L+
Sbjct: 134 GNKCDLEDERVVPAEDGRRLA-DDLGFEFFEASAKENINVKQVFERLVDV 182
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking,
protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Length = 170
Score = 77.2 bits (191), Expect = 9e-18
Identities = 41/166 (24%), Positives = 83/166 (50%), Gaps = 16/166 (9%)
Query: 52 VVVMGGARVGKSSIISQFLYDRFISRYKET--VEELHRGEYELPDGAQLTLDILDTSGAY 109
VV++G VGK+S++ ++ ++F ++ T L + + + G ++ L I DT+G
Sbjct: 9 VVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTK-KLNI-GGKRVNLAIWDTAGQE 66
Query: 110 QFPAMRELSIST-----ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKC 164
+F ++ ++ +LVY + D ++ VK+ +++ G + + +VGNK
Sbjct: 67 RF---H--ALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKI 121
Query: 165 ELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQ 209
+LE + V + AE+ A SAK+N I ++F +L +
Sbjct: 122 DLEKERHVSIQEAESYA-ESVGAKHYHTSAKQNKGIEELFLDLCKR 166
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.10A {Homo sapiens}
Length = 192
Score = 77.3 bits (191), Expect = 1e-17
Identities = 47/173 (27%), Positives = 81/173 (46%), Gaps = 27/173 (15%)
Query: 51 RVVVMGGARVGKSSIISQFLYDRFISRYKET--VE------ELHRGEYELPDGAQLTLDI 102
+V+++G VGK+S++ +F D F K T V+ EL G ++ L I
Sbjct: 28 QVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVEL--------RGKKIRLQI 79
Query: 103 LDTSGAYQFPAMRELSIST-----ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPI 157
DT+G +F SI++ A +LVY + T+D + + I +
Sbjct: 80 WDTAGQERF---N--SITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAEL 134
Query: 158 VVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQ 209
++VGNK + E ++ R+ E A F E SAK+N+N+ ++F +L+
Sbjct: 135 LLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDD 187
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase,
rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus
musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Length = 170
Score = 76.4 bits (189), Expect = 2e-17
Identities = 41/166 (24%), Positives = 73/166 (43%), Gaps = 16/166 (9%)
Query: 52 VVVMGGARVGKSSIISQFLYDRFISRYKET--VEELHRGEYELPDGAQLTLDILDTSGAY 109
V ++G VGKSSI+ +F+ D F T + + + I DT+G
Sbjct: 9 VCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTK-TVQY-QNELHKFLIWDTAGLE 66
Query: 110 QFPAMRELSIST-----ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKC 164
+F R +++ + A ++VY + T+ +K+ ++ + + + GNKC
Sbjct: 67 RF---R--ALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKC 121
Query: 165 ELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQ 209
+L +V A+ A FVE SAK NI ++F E+ +
Sbjct: 122 DLTDVREVMERDAKDYA-DSIHAIFVETSAKNAININELFIEISRR 166
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein,
GDPNP, SLP2A, exophil GTP-binding, lipoprotein,
membrane, methylation; HET: GNP; 1.80A {Mus musculus}
PDB: 2iey_A* 2if0_A* 2zet_A*
Length = 195
Score = 76.9 bits (190), Expect = 2e-17
Identities = 40/188 (21%), Positives = 90/188 (47%), Gaps = 25/188 (13%)
Query: 51 RVVVMGGARVGKSSIISQFLYDRFISRYKET--VE--------ELHRGEYELPDGAQLTL 100
+ + +G + VGK+S++ Q+ +F S++ T ++ + + + G ++ L
Sbjct: 13 KFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHL 72
Query: 101 DILDTSGAYQFPAMRELSIST-----ADAFVLVYAVDDASTWDVVKD-LREQIVNKRGLM 154
+ DT+G +F R S++T A F+L++ + + ++ V++ + + ++
Sbjct: 73 QLWDTAGLERF---R--SLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSEN 127
Query: 155 VPIVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQ--AK 211
IV+ GNK +LE + V+ E A +A + + E SA NI + LL +
Sbjct: 128 PDIVLCGNKSDLEDQRAVKEEEARELA-EKYGIPYFETSAANGTNISHAIEMLLDLIMKR 186
Query: 212 VQYNLSPA 219
++ ++ +
Sbjct: 187 MERSVDKS 194
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics
consortium, SGC, cell GTP-binding, lipoprotein,
membrane, methylation; HET: GDP; 1.90A {Homo sapiens}
Length = 191
Score = 76.5 bits (189), Expect = 3e-17
Identities = 43/172 (25%), Positives = 82/172 (47%), Gaps = 28/172 (16%)
Query: 52 VVVMGGARVGKSSIISQFLYDRFISRYKET--VE------ELHRGEYELPDGAQLTLDIL 103
++++G + VGK+S + ++ D F + T ++ ++ L I
Sbjct: 26 LLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYR--------HEKRVKLQIW 77
Query: 104 DTSGAYQFPAMRELSIST-----ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIV 158
DT+G ++ R +I+T A F+L+Y + + +++ V+D QI ++
Sbjct: 78 DTAGQERY---R--TITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVI 132
Query: 159 VVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQ 209
+VGNKC++E + V E + +A F E SAKEN ++ Q F+ L+
Sbjct: 133 LVGNKCDMEEERVVPTEKGQLLA-EQLGFDFFEASAKENISVRQAFERLVDA 183
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein
transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8
PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A*
1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A*
2hei_A* 1z07_A*
Length = 170
Score = 75.6 bits (187), Expect = 3e-17
Identities = 40/166 (24%), Positives = 82/166 (49%), Gaps = 16/166 (9%)
Query: 52 VVVMGGARVGKSSIISQFLYDRFISRYKET--VEELHRGEYELPDGAQLTLDILDTSGAY 109
+V++G + VGKSS++ +F+ +F + T L + L D + +I DT+G
Sbjct: 9 LVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQ-TVCL-DDTTVKFEIWDTAGQE 66
Query: 110 QFPAMRELSIST-----ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKC 164
++ S++ A A ++VY + + ++ K+ +++ + + I + GNK
Sbjct: 67 RY---H--SLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKA 121
Query: 165 ELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQ 209
+L K V + A++ A D F+E SAK + N+ ++F + +
Sbjct: 122 DLANKRAVDFQEAQSYAD-DNSLLFMETSAKTSMNVNEIFMAIAKK 166
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding,
guanine-nucleotide exchang GDI-displacement factor;
2.85A {Homo sapiens}
Length = 199
Score = 75.8 bits (187), Expect = 5e-17
Identities = 54/206 (26%), Positives = 89/206 (43%), Gaps = 31/206 (15%)
Query: 21 GACERLRLHSLGTESTSSSGTGVGLQKDKR---RVVVMGGARVGKSSIISQFLYDRFISR 77
G+ HS G + + +++++G + VGKS ++ +F D +
Sbjct: 2 GSSHHHHHHSSGENLYFQGRPMSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTES 61
Query: 78 YKET--VE------ELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSIST-----ADA 124
Y T V+ EL DG + L I DT+G +F R +I++ A
Sbjct: 62 YISTIGVDFKIRTIEL--------DGKTIKLQIWDTAGQERF---R--TITSSYYRGAHG 108
Query: 125 FVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELE-FKDVRREIAETIALYD 183
++VY V D +++ VK ++I V ++VGNKC+L K V A+ A
Sbjct: 109 IIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFAD-S 167
Query: 184 WQCGFVECSAKENYNIVQVFKELLAQ 209
F+E SAK N+ Q F + A+
Sbjct: 168 LGIPFLETSAKNATNVEQSFMTMAAE 193
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase
nucleotide free complex; 2.00A {Mus musculus} SCOP:
c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Length = 183
Score = 75.3 bits (186), Expect = 5e-17
Identities = 48/173 (27%), Positives = 85/173 (49%), Gaps = 28/173 (16%)
Query: 51 RVVVMGGARVGKSSIISQFLYDRFISRYKET--VE------ELHRGEYELPDGAQLTLDI 102
+++++G + VGK+ ++ +F D F S + T ++ EL DG ++ L I
Sbjct: 10 KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIEL--------DGKRIKLQI 61
Query: 103 LDTSGAYQFPAMRELSIST-----ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPI 157
DT+G +F R +I+T A +LVY + + ++D +++ I V
Sbjct: 62 WDTAGQERF---R--TITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEK 116
Query: 158 VVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQ 209
+++GNKC++ K V +E E +A D+ F+E SAK N N+ F L
Sbjct: 117 MILGNKCDVNDKRQVSKERGEKLA-LDYGIKFMETSAKANINVENAFFTLARD 168
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.05A {Homo sapiens}
Length = 201
Score = 75.8 bits (187), Expect = 5e-17
Identities = 41/173 (23%), Positives = 80/173 (46%), Gaps = 27/173 (15%)
Query: 51 RVVVMGGARVGKSSIISQFLYDRFISRYKET--VE------ELHRGEYELPDGAQLTLDI 102
++V++G A VGK+ ++ +F F R T V+ E+ G ++ L I
Sbjct: 31 KLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEI--------QGKRVKLQI 82
Query: 103 LDTSGAYQFPAMRELSIST-----ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPI 157
DT+G +F R +I+ A+ +L Y + S++ V E + G +
Sbjct: 83 WDTAGQERF---R--TITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQ 137
Query: 158 VVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQ 209
+++GNK +L +V A+++A + +E SAK++ N+ + F + +
Sbjct: 138 LLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATE 190
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine
exchange factor; 2.10A {Homo sapiens}
Length = 181
Score = 75.3 bits (186), Expect = 6e-17
Identities = 47/174 (27%), Positives = 81/174 (46%), Gaps = 31/174 (17%)
Query: 51 RVVVMGGARVGKSSIISQFLYDRFISRYKET--VE------ELHRGEYELPDGAQLTLDI 102
+++++G + VGKSS++ +F + F Y T V+ E+ +G ++ L I
Sbjct: 11 KLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEI--------NGEKVKLQI 62
Query: 103 LDTSGAYQFPAMRELSIST-----ADAFVLVYAVDDASTWDVVKD-LREQIVNKRGLMVP 156
DT+G +F R +I++ ++VY V A ++ VK L E +N+ V
Sbjct: 63 WDTAGQERF---R--TITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHE--INQNCDDVC 115
Query: 157 IVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQ 209
++VGNK + + V E A A E SAKEN N+ ++F +
Sbjct: 116 RILVGNKNDDPERKVVETEDAYKFAG-QMGIQLFETSAKENVNVEEMFNCITEL 168
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein
transport-protein binding compl; HET: GTP; 2.18A {Homo
sapiens}
Length = 196
Score = 75.4 bits (186), Expect = 7e-17
Identities = 50/173 (28%), Positives = 82/173 (47%), Gaps = 28/173 (16%)
Query: 51 RVVVMGGARVGKSSIISQFLYDRFISRYKET--VE------ELHRGEYELPDGAQLTLDI 102
+++++G + VGKS ++ +F D + Y T V+ EL DG + L I
Sbjct: 18 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL--------DGKTIKLQI 69
Query: 103 LDTSGAYQFPAMRELSIST-----ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPI 157
DT+G +F R +I++ A ++VY V D +++ VK ++I V
Sbjct: 70 WDTAGQERF---R--TITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNK 124
Query: 158 VVVGNKCELE-FKDVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQ 209
++VGNKC+L K V A+ A F+E SAK N+ Q F + A+
Sbjct: 125 LLVGNKCDLTTKKVVDYTTAKEFAD-SLGIPFLETSAKNATNVEQSFMTMAAE 176
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 78.5 bits (193), Expect = 7e-17
Identities = 29/170 (17%), Positives = 62/170 (36%), Gaps = 16/170 (9%)
Query: 51 RVVVMGGARVGKSSIISQFLYDRFISRYKETV--------EELHRGEYELPDGAQLTLDI 102
+V ++G GK+S++ Q + + F + +T +G + +
Sbjct: 43 KVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHF 102
Query: 103 LDTSGAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKD-LREQIVNKRGLMVPIVVVG 161
D G A + ++ + ++L+ D+ T LR + K G P++VV
Sbjct: 103 WDFGGQEIMHASHQFFMTRSSVYMLLL---DSRTDSNKHYWLRH--IEKYGGKSPVIVVM 157
Query: 162 NKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQA 210
NK + ++ ++ + F S K + + K L +
Sbjct: 158 NKIDENPSYNIEQKKINERF-PAIENRFHRISCKNGDGVESIAKSLKSAV 206
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB
protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: c.37.1.8
Length = 203
Score = 74.6 bits (184), Expect = 1e-16
Identities = 45/170 (26%), Positives = 87/170 (51%), Gaps = 22/170 (12%)
Query: 51 RVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRG-EYELP----DGAQLTLDILDT 105
+++++G + VGK+S + ++ D F + TV G ++++ + ++ L I DT
Sbjct: 10 KILIIGNSSVGKTSFLFRYADDSFTPAFVSTV-----GIDFKVKTIYRNDKRIKLQIWDT 64
Query: 106 SGAYQFPAMRELSIST-----ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVV 160
+G ++ R +I+T A F+L+Y + + +++ V+D QI +++V
Sbjct: 65 AGLERY---R--TITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLV 119
Query: 161 GNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQ 209
GNKC++E + V E +A F E SAK+N N+ Q F+ L+
Sbjct: 120 GNKCDMEDERVVSSERGRQLA-DHLGFEFFEASAKDNINVKQTFERLVDV 168
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide,
transport protein; HET: GNH; 2.08A {Arabidopsis
thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Length = 181
Score = 74.1 bits (183), Expect = 2e-16
Identities = 42/172 (24%), Positives = 81/172 (47%), Gaps = 28/172 (16%)
Query: 52 VVVMGGARVGKSSIISQFLYDRFISRYKET--VEELHRGEYELPDGAQLTLDILDTSGAY 109
+V++G GKSS++ +F+ D+F+ + T + + + A + +I DT+G
Sbjct: 15 LVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQ-TLAV-NDATVKFEIWDTAGQE 72
Query: 110 QFPAMRELSIST-----ADAFVLVYAV------DDASTWDVVKDLREQIVNKRGLMVPIV 158
++ S++ A A ++V+ V + A W V++L+ Q + +
Sbjct: 73 RY---H--SLAPMYYRGAAAAIIVFDVTNQASFERAKKW--VQELQAQ----GNPNMVMA 121
Query: 159 VVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQ 209
+ GNK +L V E A+T A + F+E SAK N+ ++F E+ +
Sbjct: 122 LAGNKSDLLDARKVTAEDAQTYAQ-ENGLFFMETSAKTATNVKEIFYEIARR 172
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, unknown
function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 180
Score = 73.8 bits (182), Expect = 2e-16
Identities = 42/183 (22%), Positives = 90/183 (49%), Gaps = 29/183 (15%)
Query: 51 RVVVMGGARVGKSSIISQFLYDRFISR-YKET--VE------ELHRGEYELPDGAQLTLD 101
+V+++G + VGK+ ++ +F F++ + T ++ ++ DG ++ L
Sbjct: 12 KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDV--------DGVKVKLQ 63
Query: 102 ILDTSGAYQFPAMRELSIST-----ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVP 156
+ DT+G +F R S++ A A +L+Y V + +++D ++ +I V
Sbjct: 64 MWDTAGQERF---R--SVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVA 118
Query: 157 IVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQAKVQYN 215
++++GNK + + V+RE E +A ++ F+E SAK N+ F + + K +
Sbjct: 119 LMLLGNKVDSAHERVVKREDGEKLA-KEYGLPFMETSAKTGLNVDLAFTAIAKELKRRSM 177
Query: 216 LSP 218
+P
Sbjct: 178 KAP 180
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB:
2iez_A*
Length = 217
Score = 74.7 bits (184), Expect = 2e-16
Identities = 34/176 (19%), Positives = 78/176 (44%), Gaps = 23/176 (13%)
Query: 51 RVVVMGGARVGKSSIISQFLYDRFISRYKET--VE--------ELHRGEYELPDGAQLTL 100
+++ +G + VGK++ + ++ ++F ++ T ++ ++ L
Sbjct: 27 KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHL 86
Query: 101 DILDTSGAYQFPAMRELSIST-----ADAFVLVYAVDDASTWDVVKD-LREQIVNKRGLM 154
+ DT+G +F R S++T A F+L++ + ++ V++ + + N
Sbjct: 87 QLWDTAGQERF---R--SLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCEN 141
Query: 155 VPIVVVGNKCELE-FKDVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQ 209
IV++GNK +L ++V A +A + + E SA N+ + + LL
Sbjct: 142 PDIVLIGNKADLPDQREVNERQARELA-DKYGIPYFETSAATGQNVEKAVETLLDL 196
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A*
3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Length = 206
Score = 73.5 bits (181), Expect = 4e-16
Identities = 47/172 (27%), Positives = 85/172 (49%), Gaps = 28/172 (16%)
Query: 52 VVVMGGARVGKSSIISQFLYDRFISRYKET--VE------ELHRGEYELPDGAQLTLDIL 103
++++G + VGKS ++ +F D + + Y T V+ EL DG + L I
Sbjct: 11 LLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVEL--------DGKTVKLQIW 62
Query: 104 DTSGAYQFPAMRELSIST-----ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIV 158
DT+G +F R +I++ + ++VY V D +++ VK ++I V +
Sbjct: 63 DTAGQERF---R--TITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKL 117
Query: 159 VVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQ 209
+VGNKC+L+ K V ++A+ A + F+E SA ++ N+ F + Q
Sbjct: 118 LVGNKCDLKDKRVVEYDVAKEFA-DANKMPFLETSALDSTNVEDAFLTMARQ 168
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP
hydrolysis, YPT/RAB protein, endocytosis, hydrolase;
HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP:
c.37.1.8
Length = 170
Score = 72.1 bits (177), Expect = 6e-16
Identities = 38/163 (23%), Positives = 74/163 (45%), Gaps = 7/163 (4%)
Query: 52 VVVMGGARVGKSSIISQFLYDRFISRYKET--VEELHRGEYELPDGAQLTLDILDTSGAY 109
+V++G A VGKSSI+ +F+ + F + T L + + + + +I DT+G
Sbjct: 6 LVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQ-RVTI-NEHTVKFEIWDTAGQE 63
Query: 110 QFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFK 169
+F ++ A A ++VY V ++ + +++ + + I +VGNK + +
Sbjct: 64 RFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQE 123
Query: 170 DVRREIAETIA---LYDWQCGFVECSAKENYNIVQVFKELLAQ 209
R++A + F E SAK N+ VF + +
Sbjct: 124 GGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEK 166
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics,
GTP-binding, nucleotide-binding, signaling protein; HET:
GDP; 1.89A {Plasmodium falciparum}
Length = 208
Score = 73.3 bits (180), Expect = 6e-16
Identities = 39/196 (19%), Positives = 71/196 (36%), Gaps = 40/196 (20%)
Query: 51 RVVVMGGARVGKSSIISQFLYDRFISRYKETV---------------------------- 82
+ V++G + VGKSSI+ + D F T+
Sbjct: 9 KTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNI 68
Query: 83 ---------EELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLVYAVDD 133
++ + + DI DT+G ++ ++ L A ++V+ + +
Sbjct: 69 NSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISN 128
Query: 134 ASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIALYDWQCGFVECSA 193
++T D K Q+ K I++V NK + V + A D F++ SA
Sbjct: 129 SNTLDRAKTWVNQL--KISSNYIIILVANKIDKNKFQVDILEVQKYA-QDNNLLFIQTSA 185
Query: 194 KENYNIVQVFKELLAQ 209
K NI +F L +
Sbjct: 186 KTGTNIKNIFYMLAEE 201
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z0a_A*
Length = 191
Score = 72.6 bits (179), Expect = 6e-16
Identities = 49/173 (28%), Positives = 77/173 (44%), Gaps = 28/173 (16%)
Query: 51 RVVVMGGARVGKSSIISQFLYDRFISRYKET--VE------ELHRGEYELPDGAQLTLDI 102
+ +++G VGKS ++ QF RF + T VE + DG Q+ L I
Sbjct: 23 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNI--------DGKQIKLQI 74
Query: 103 LDTSGAYQFPAMRELSIST-----ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPI 157
DT+G F R SI+ A +LVY + T++ + E + I
Sbjct: 75 WDTAGQESF---R--SITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVI 129
Query: 158 VVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQ 209
+++GNK +LE + DV+RE E A + F+E SAK N+ + F +
Sbjct: 130 MLIGNKSDLESRRDVKREEGEAFA-REHGLIFMETSAKTACNVEEAFINTAKE 181
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, signaling
protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 201
Score = 72.7 bits (179), Expect = 7e-16
Identities = 44/167 (26%), Positives = 85/167 (50%), Gaps = 16/167 (9%)
Query: 51 RVVVMGGARVGKSSIISQFLYDRFISRYKET--VEELHRGEYELPDGAQLTLDILDTSGA 108
++V++G A VGK+ ++ +F F T V+ + + E+ +G ++ L I DT+G
Sbjct: 28 KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIK-TVEI-NGEKVKLQIWDTAGQ 85
Query: 109 YQFPAMRELSIST-----ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNK 163
+F R SI+ A+A +L Y + ++ + + +I V V+VGNK
Sbjct: 86 ERF---R--SITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNK 140
Query: 164 CELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQ 209
+L + +V ++ AE + ++E SAKE+ N+ ++F +L +
Sbjct: 141 IDLAERREVSQQRAEEFSE-AQDMYYLETSAKESDNVEKLFLDLACR 186
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular
trafficking, protein transport; HET: GNP; 1.81A {Mus
musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Length = 189
Score = 72.2 bits (178), Expect = 1e-15
Identities = 42/181 (23%), Positives = 82/181 (45%), Gaps = 31/181 (17%)
Query: 51 RVVVMGGARVGKSSIISQFLYDRFISRYKET--VE------ELHRGEYELPDGAQLTLDI 102
+++V+G + VGK+ + +F RF R + T V+ ++ DG ++ + +
Sbjct: 22 KIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDI--------DGERIKIQL 73
Query: 103 LDTSGAYQFPAMRELSIST-----ADAFVLVYAVDDASTWDVVKD-LREQIVNKRGLMVP 156
DT+G +F R+ S+ A V VY + + +++ + + E + +P
Sbjct: 74 WDTAGQERF---RK-SMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIP 129
Query: 157 IVVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAK---ENYNIVQVFKELLAQAKV 212
++VGNKC+L V ++A+ A E SAK +N ++ +F L + K
Sbjct: 130 RILVGNKCDLRSAIQVPTDLAQKFAD-THSMPLFETSAKNPNDNDHVEAIFMTLAHKLKS 188
Query: 213 Q 213
Sbjct: 189 H 189
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular
trafficking, GTP-binding, lipoprotein, prenylation,
protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Length = 191
Score = 71.9 bits (177), Expect = 1e-15
Identities = 45/167 (26%), Positives = 84/167 (50%), Gaps = 16/167 (9%)
Query: 51 RVVVMGGARVGKSSIISQFLYDRFISRYKET--VEELHRGEYELPDGAQLTLDILDTSGA 108
+VV++G + VGKS+++S+F + F K T VE R ++ DG + I DT+G
Sbjct: 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATR-SIQV-DGKTIKAQIWDTAGL 88
Query: 109 YQFPAMRELSIST-----ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNK 163
++ R +I++ A +LVY + T++ V+ +++ + + I++VGNK
Sbjct: 89 ERY---R--AITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNK 143
Query: 164 CELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQ 209
+L V + A A F+E SA ++ N+ F+ +L +
Sbjct: 144 SDLRHLRAVPTDEARAFAE-KNGLSFIETSALDSTNVEAAFQTILTE 189
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2,
ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding,
GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB:
3d6t_B*
Length = 184
Score = 71.6 bits (176), Expect = 2e-15
Identities = 24/174 (13%), Positives = 70/174 (40%), Gaps = 17/174 (9%)
Query: 52 VVVMGGARVGKSSIISQFLYDRF--ISRYKET--VEELHRGEYELPD--GAQLTLDILDT 105
++++G GK++++ Q + + + T ++ ++ D L L++ D
Sbjct: 5 LMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDW-PIQIRDKRKRDLVLNVWDF 63
Query: 106 SGAYQFPAMRELSISTADAFVLVYAV-DDASTWDVVKDLREQIVNKRGLMVPIVVVGNKC 164
+G +F + ++ ++ VY + + D +K I R P+++VG
Sbjct: 64 AGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNI-KARASSSPVILVGTHL 122
Query: 165 ELEFKDVRR--------EIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQA 210
++ + R+ E+ + + +E+ + ++ K ++ ++
Sbjct: 123 DVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINES 176
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular
trafficking, protein transport; HET: GDP; 2.15A {Homo
sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Length = 179
Score = 71.1 bits (175), Expect = 2e-15
Identities = 45/173 (26%), Positives = 78/173 (45%), Gaps = 28/173 (16%)
Query: 51 RVVVMGGARVGKSSIISQFLYDRFISRYKET--VE------ELHRGEYELPDGAQLTLDI 102
+ +++G VGKS ++ QF +F++ T VE E+ G ++ L I
Sbjct: 17 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEV--------SGQKIKLQI 68
Query: 103 LDTSGAYQFPAMRELSIST-----ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPI 157
DT+G +F R +++ A ++VY + ST++ + N I
Sbjct: 69 WDTAGQERF---R--AVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVI 123
Query: 158 VVVGNKCELE-FKDVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQ 209
+++GNK +LE +DV E A+ A + F+E SAK N+ F E +
Sbjct: 124 ILIGNKADLEAQRDVTYEEAKQFA-EENGLLFLEASAKTGENVEDAFLEAAKK 175
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 2.30A {Homo sapiens}
Length = 193
Score = 71.1 bits (175), Expect = 3e-15
Identities = 43/167 (25%), Positives = 84/167 (50%), Gaps = 16/167 (9%)
Query: 51 RVVVMGGARVGKSSIISQFLYDRFISRYKET--VEELHRGEYELPDGAQLTLDILDTSGA 108
+VV++G + VGK++++S+F + F + T VE R L A + I DT+G
Sbjct: 27 KVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTR-TVML-GTAAVKAQIWDTAGL 84
Query: 109 YQFPAMRELSIST-----ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNK 163
++ R +I++ A +LV+ + T+ VV+ +++ + + +++VGNK
Sbjct: 85 ERY---R--AITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNK 139
Query: 164 CELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQ 209
+L +V E A A + F+E SA ++ N+ F+ +L +
Sbjct: 140 SDLSQAREVPTEEARMFAE-NNGLLFLETSALDSTNVELAFETVLKE 185
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle
transport, hydrolase; HET: GDP; 1.55A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A*
2gzh_A* 2d7c_A* 3bfk_A*
Length = 199
Score = 70.8 bits (174), Expect = 3e-15
Identities = 46/167 (27%), Positives = 84/167 (50%), Gaps = 16/167 (9%)
Query: 51 RVVVMGGARVGKSSIISQFLYDRFISRYKET--VEELHRGEYELPDGAQLTLDILDTSGA 108
+VV++G + VGKS+++S+F + F K T VE R ++ DG + I DT+G
Sbjct: 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATR-SIQV-DGKTIKAQIWDTAGQ 64
Query: 109 YQFPAMRELSIST-----ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNK 163
++ R I++ A +LVY + T++ V+ +++ + + I++VGNK
Sbjct: 65 ERY---R--RITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNK 119
Query: 164 CELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQ 209
+L V + A A F+E SA ++ N+ + FK +L +
Sbjct: 120 SDLRHLRAVPTDEARAFA-EKNNLSFIETSALDSTNVEEAFKNILTE 165
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.20A {Homo sapiens}
Length = 200
Score = 70.4 bits (173), Expect = 5e-15
Identities = 39/173 (22%), Positives = 72/173 (41%), Gaps = 28/173 (16%)
Query: 51 RVVVMGGARVGKSSIISQFLYDRFISRYKET--VE------ELHRGEYELPDGAQLTLDI 102
+ +V+G A GKS ++ QF+ ++F T VE + G + L I
Sbjct: 27 KFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNV--------GGKTVKLQI 78
Query: 103 LDTSGAYQFPAMRELSIST-----ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPI 157
DT+G +F R S++ A +LVY + T++ + + +
Sbjct: 79 WDTAGQERF---R--SVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVV 133
Query: 158 VVVGNKCELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQ 209
++ GNK +L+ + +V A A + + F+E SA N+ + F +
Sbjct: 134 ILCGNKKDLDPEREVTFLEASRFA-QENELMFLETSALTGENVEEAFLKCART 185
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular
transport, endocytosis, prenylation, protein transport,
transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8
PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Length = 186
Score = 69.1 bits (170), Expect = 1e-14
Identities = 40/173 (23%), Positives = 73/173 (42%), Gaps = 28/173 (16%)
Query: 51 RVVVMGGARVGKSSIISQFLYDRFISRYKET--VE------ELHRGEYELPDGAQLTLDI 102
+ +V+G A GKS ++ QF+ +F T VE + G + L I
Sbjct: 12 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINV--------GGKYVKLQI 63
Query: 103 LDTSGAYQFPAMRELSIST-----ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPI 157
DT+G +F R S++ A +LVY + T++ + + + I
Sbjct: 64 WDTAGQERF---R--SVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVI 118
Query: 158 VVVGNKCELE-FKDVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQ 209
++ GNK +L+ ++V A A + + F+E SA N+ + F + +
Sbjct: 119 ILCGNKKDLDADREVTFLEASRFA-QENELMFLETSALTGENVEEAFVQCARK 170
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT
complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Length = 208
Score = 68.9 bits (169), Expect = 2e-14
Identities = 42/206 (20%), Positives = 77/206 (37%), Gaps = 34/206 (16%)
Query: 32 GTESTSSSGTGVGLQKDKR-RVVVMGGARVGKSSIISQF--LYDRFISRYKET--VEELH 86
+ + R +V V+G A VGKS++IS F +F+ Y T VE +
Sbjct: 2 AASMVKKEVKPIDITATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVV 61
Query: 87 RGEYELPDGAQLTLDI--LDTSG--AYQFPAMRELSIST-----ADAFVLVYAVDDASTW 137
+ +++++ LDT+G Y+ + +LV+ V ++
Sbjct: 62 A-PVTI-PDTTVSVELFLLDTAGSDLYK-------EQISQYWNGVYYAILVFDVSSMESF 112
Query: 138 DVVKDLREQIVNKRGLM---VPIVVVGNKCELEFK--DVRREIAETIALYDWQCG--FVE 190
+ K E + + R + V+V NK +L + VR ++A+ A F +
Sbjct: 113 ESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWAT---TNTLDFFD 169
Query: 191 CSAK-ENYNIVQVFKELLAQAKVQYN 215
SA + F + Y
Sbjct: 170 VSANPPGKDADAPFLSIATTFYRNYE 195
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular
transport, acetylation, golgi apparatus, lipoprotein,
membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Length = 223
Score = 66.6 bits (163), Expect = 2e-13
Identities = 44/167 (26%), Positives = 85/167 (50%), Gaps = 16/167 (9%)
Query: 51 RVVVMGGARVGKSSIISQFLYDRFISRYKET--VEELHRGEYELPDGAQLTLDILDTSGA 108
++V++G + VGKS+++S+F + F K T VE R E+ +G ++ I DT+G
Sbjct: 15 KIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATR-TLEI-EGKRIKAQIWDTAGQ 72
Query: 109 YQFPAMRELSIST-----ADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNK 163
++ R +I++ A ++VY + +S+++ ++ V + ++GNK
Sbjct: 73 ERY---R--AITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNK 127
Query: 164 CELEFK-DVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQ 209
+L V E ++T A + Q F E SA + N+ + F+EL+
Sbjct: 128 SDLAHLRAVPTEESKTFA-QENQLLFTETSALNSENVDKAFEELINT 173
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase,
cell adhesion, nucleotide-binding, protein engineering,
RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa}
PDB: 2wkr_A* 2wkp_A*
Length = 332
Score = 65.8 bits (160), Expect = 1e-12
Identities = 43/213 (20%), Positives = 82/213 (38%), Gaps = 27/213 (12%)
Query: 11 GLQTDYRKMPGACERLRLHSLGTESTSSSGTGVGLQKDKRRVVVMGGARVGKSSIISQFL 70
G+Q D + ++ K+ + VV+G VGK+ ++ +
Sbjct: 120 GVQLDGTEH---VRDAAEREGVMLIKKTAENIDEAAKELIKCVVVGDGAVGKTCLLISYT 176
Query: 71 YDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLVYA 130
+ F Y TV + + + DG + L + DT+G + +R LS D F++ ++
Sbjct: 177 TNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFS 235
Query: 131 VDDASTWDVVKD--LREQIVNKRGLMVPIVVVGNKCEL-------------EFKDVRREI 175
+ +++ V+ E V PI++VG K +L + +
Sbjct: 236 LVSPASFHHVRAKWYPE--VRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQ 293
Query: 176 AETIALYDWQCG---FVECSAKENYNIVQVFKE 205
+A + G ++ECSA + VF E
Sbjct: 294 GLAMA---KEIGAVKYLECSALTQRGLKTVFDE 323
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus
stearothermophilus} PDB: 2lkd_A*
Length = 178
Score = 54.2 bits (131), Expect = 2e-09
Identities = 46/174 (26%), Positives = 75/174 (43%), Gaps = 24/174 (13%)
Query: 52 VVVMGGARVGKSSIISQFLYDRFISRYKETVEEL-----HRGEYELP-DGAQLTLDILDT 105
V +MG GK++ L D I K T +E H G Y++ + ++T LDT
Sbjct: 11 VTIMGHVDHGKTT-----LLDA-IRHSKVTEQEAGGITQHIGAYQVTVNDKKITF--LDT 62
Query: 106 SGAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCE 165
G F MR D +LV A DD V+ E I + + VPI+V NK +
Sbjct: 63 PGHEAFTTMRARGAQVTDIVILVVAADDG----VMPQTVEAINHAKAANVPIIVAINKMD 118
Query: 166 LEFKD---VRREIAE-TIALYDW--QCGFVECSAKENYNIVQVFKELLAQAKVQ 213
+ V +E+ E + +W F + SAK + + + +L ++++
Sbjct: 119 KPEANPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVSEME 172
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 54.7 bits (132), Expect = 2e-09
Identities = 29/179 (16%), Positives = 56/179 (31%), Gaps = 21/179 (11%)
Query: 51 RVVVMGGARVGKSSIISQFLYDRFISRYKETVEEL------------HRGEYELPDGAQL 98
++V G GK++ + +++Y + K + L + G +
Sbjct: 16 KIVYYGPGLSGKTTNL-KWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKT 74
Query: 99 TLDILDTSGAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLM---- 154
+ G + A R+L + D V V + +R N
Sbjct: 75 RFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLD 134
Query: 155 -VPIVVVGNKCELEFKDVRREIAETIAL-YDWQCGFVECSAKENYNIVQVFKELLAQAK 211
VPIV+ NK +L + + + +E A E + + KE+
Sbjct: 135 DVPIVIQVNKRDLPDALPVEMVRAVVDPEGKFPV--LEAVATEGKGVFETLKEVSRLVL 191
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 51.1 bits (122), Expect = 8e-08
Identities = 27/200 (13%), Positives = 77/200 (38%), Gaps = 23/200 (11%)
Query: 48 DKRRVVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYE-LPDGAQLTLDILDTS 106
++++MG + GKSS+ S ++ + + + E+ L +TL++ D
Sbjct: 2 LGSKLLLMGRSGSGKSSMRS-IIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCG 60
Query: 107 GAYQF-----PAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLM--VPIVV 159
G F ++ + V+ V+ ++ + + R I V
Sbjct: 61 GQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFV 120
Query: 160 VGNKCEL--------EFKDVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQAK 211
+ +K +L F+ + + ++ET + + + ++ + ++ + + ++
Sbjct: 121 LLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWDESLYKAW------SQ 174
Query: 212 VQYNLSPAVRRRRQSLPNYI 231
+ +L P + + +L +
Sbjct: 175 IVCSLIPNMSNHQSNLKKFK 194
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 49.6 bits (118), Expect = 1e-07
Identities = 29/184 (15%), Positives = 56/184 (30%), Gaps = 29/184 (15%)
Query: 31 LGTESTSSSGTGVGLQKDKR-RVVVMGGARVGKSSIISQFLYD-------RFISRYKETV 82
+ SSG + + R+++MG R GKSSI + S K
Sbjct: 1 MHHHHHHSSGRENLYFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYK 60
Query: 83 EELHRGEYELPDGAQLTLDILDTSGAYQF--PAMRELSISTADAFVLVYAVDDASTWDVV 140
+++ + + I D G F P I L+Y +D +
Sbjct: 61 DDISNSSF-------VNFQIWDFPGQMDFFDPTFDYEMIFR-GTGALIYVIDAQDDYMEA 112
Query: 141 KDLREQIVNKRGLM---VPIVVVGNKCEL--------EFKDVRREIAETIALYDWQCGFV 189
V+K + + V +K + +D+ + + +A + +
Sbjct: 113 LTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHL 172
Query: 190 ECSA 193
Sbjct: 173 SFYL 176
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA,
ribosomal; 10.80A {Bos taurus}
Length = 537
Score = 40.6 bits (96), Expect = 3e-04
Identities = 42/138 (30%), Positives = 63/138 (45%), Gaps = 18/138 (13%)
Query: 86 HRGEY--ELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDL 143
H G + LP G ++T LDT G F AMR D +LV A DD V+K
Sbjct: 40 HIGAFLVSLPSGEKIT--FLDTPGHAAFSAMRARGTQVTDIVILVVAADD----GVMKQT 93
Query: 144 REQIVNKRGLMVPIVVVGNKCELEFKD---VRREIAET-IALYDWQCG----FVECSAKE 195
E I + + VPIV+ NKC+ D V++E+ + D+ G V SA
Sbjct: 94 VESIQHAKDAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDY--GGDVQAVHVSALT 151
Query: 196 NYNIVQVFKELLAQAKVQ 213
N++ + + +A A++
Sbjct: 152 GENMMALAEATIALAEML 169
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 39.3 bits (91), Expect = 6e-04
Identities = 33/198 (16%), Positives = 63/198 (31%), Gaps = 22/198 (11%)
Query: 52 VVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQF 111
V++MG R GKSSI ++ +E E + L +++ G Q
Sbjct: 2 VLLMGVRRCGKSSICK-VVFHNMQPLDTLYLESTSNPSLE-HFSTLIDLAVMELPG--QL 57
Query: 112 PAMRELSISTA---DAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVP---IVVVGNKCE 165
S LVY +D + I+ + P I V+ +K +
Sbjct: 58 NYFEPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVD 117
Query: 166 L--------EFKDVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQAKVQYNLS 217
+D+ + E + V ++ +++ A +++ L
Sbjct: 118 GLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFD-HSIYE---AFSRIVQKLI 173
Query: 218 PAVRRRRQSLPNYIGTTG 235
P + L N I +
Sbjct: 174 PELSFLENMLDNLIQHSK 191
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 38.9 bits (90), Expect = 0.001
Identities = 21/133 (15%), Positives = 39/133 (29%), Gaps = 7/133 (5%)
Query: 51 RVVVMGGARVGKSSIISQFL----YDRFISRYKETVEELHRGEYELPDGAQLTLDILDTS 106
V V G GKSS I+ + ++ + R Y+ P+ + L
Sbjct: 71 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGI 130
Query: 107 GAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCEL 166
G+ FP L + + D+ + I + V K +
Sbjct: 131 GSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMK---KEFYFVRTKVDS 187
Query: 167 EFKDVRREIAETI 179
+ + +T
Sbjct: 188 DITNEADGEPQTF 200
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation
of protein synthesis, cryo-eletron microscopy,
translation/RNA complex; 13.80A {Escherichia coli}
Length = 501
Score = 38.6 bits (91), Expect = 0.001
Identities = 44/136 (32%), Positives = 62/136 (45%), Gaps = 15/136 (11%)
Query: 86 HRGEY--ELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDL 143
H G Y E +G +T LDT G F +MR D VLV A DD V+
Sbjct: 40 HIGAYHVETENG-MITF--LDTPGHAAFTSMRARGAQATDIVVLVVAADD----GVMPQT 92
Query: 144 REQIVNKRGLMVPIVVVGNKCELEFKD---VRREIAE-TIALYDW--QCGFVECSAKENY 197
E I + + VP+VV NK + D V+ E+++ I +W + FV SAK
Sbjct: 93 IEAIQHAKAAQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGT 152
Query: 198 NIVQVFKELLAQAKVQ 213
I ++ +L QA+V
Sbjct: 153 GIDELLDAILLQAEVL 168
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.9 bits (90), Expect = 0.001
Identities = 42/230 (18%), Positives = 62/230 (26%), Gaps = 81/230 (35%)
Query: 58 ARVGKSSIISQF---------------LYD-------RFISRYKETVEELHRGEYELPDG 95
G + +++ F LY I ET+ EL R +
Sbjct: 149 VGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKV 208
Query: 96 AQLTLDILD-TSGAYQFPAMRELSISTADAFVLV-------YAVDDASTWDV-VKDLREQ 146
L+IL+ P L S + L+ Y V A +LR
Sbjct: 209 FTQGLNILEWLENPSNTPDKDYLL-SIPISCPLIGVIQLAHYVV-TAKLLGFTPGELRSY 266
Query: 147 IVNKRGLMV---PIVVVGNKCELEFKDVRREIAETIALYD-WQCGFVECSAKENYNIVQV 202
+ +G +V A IA D W+ F K
Sbjct: 267 L---KGATGHSQGLVT----------------AVAIAETDSWE-SFFVSVRK-------- 298
Query: 203 FKELLA-------QAKVQYNLSPAVRRRRQSLPNYIGTTGSASSKGRYML 245
+L +A +L P++ SL N G S ML
Sbjct: 299 AITVLFFIGVRCYEAYPNTSLPPSI--LEDSLEN---NEGVPS----PML 339
Score = 33.5 bits (76), Expect = 0.067
Identities = 33/171 (19%), Positives = 47/171 (27%), Gaps = 61/171 (35%)
Query: 6 QDL-DKGLQTDYRKMPGACERLRLHSLGTE-STSSSGTGVGLQKDKRRVVVMGGARVGKS 63
+DL KGL G HSLG E + A +
Sbjct: 1745 EDLKSKGLIPADATFAG-------HSLG-EYA----------------------ALASLA 1774
Query: 64 SIISQFLYDRFISRYKETVEELH-RGEY---ELPDGAQLTLDILDTSGAYQFPAMRELSI 119
++S + VE + RG +P L + P S
Sbjct: 1775 DVMS-I---------ESLVEVVFYRGMTMQVAVPRDE---LGRSNYGMIAINPGRVAASF 1821
Query: 120 STADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVP---IVVVGNKCELE 167
S +V V + W V +IVN V V G+ L+
Sbjct: 1822 SQEALQYVVERVGKRTGWLV------EIVN---YNVENQQYVAAGDLRALD 1863
Score = 31.6 bits (71), Expect = 0.31
Identities = 20/130 (15%), Positives = 37/130 (28%), Gaps = 41/130 (31%)
Query: 41 TG-----VGLQKDKRRVVVMGG---ARVG----KSSIISQFL--YDRFISRYKETVEELH 86
+G GL R+ G +R+ K ++FL F S +L
Sbjct: 380 SGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDL- 438
Query: 87 RGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLVYAVDDASTW-----DVVK 141
+ D+ +S + D + VY D S + +
Sbjct: 439 -----------INKDL----------VKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISE 477
Query: 142 DLREQIVNKR 151
+ + I+
Sbjct: 478 RIVDCIIRLP 487
Score = 30.8 bits (69), Expect = 0.51
Identities = 41/200 (20%), Positives = 70/200 (35%), Gaps = 50/200 (25%)
Query: 67 SQFLYDRFISRYKETVEELHRGEYELPDGAQLTLDIL-------DTSGAYQFPAMRELSI 119
SQ L ++F E E + E A+L L + S QF + L +
Sbjct: 31 SQ-LQEQFNKILPEPTEGF-AADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCL 88
Query: 120 --------STAD--AFVLVYAVDDASTWDVVKDL-----REQIVNKRGLMVPIVVVGNKC 164
D A ++ +T K+L +I+ KR P +K
Sbjct: 89 TEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKR----PF----DKK 140
Query: 165 E---LEFKDVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQAKVQYN--LSPA 219
L F+ V A+ +A++ Q G ++Y F+EL + Y+ +
Sbjct: 141 SNSAL-FRAVGEGNAQLVAIFGGQ-G-----NTDDY-----FEELRDLYQT-YHVLVGDL 187
Query: 220 VRRRRQSLPNYIGTTGSASS 239
++ ++L I TT A
Sbjct: 188 IKFSAETLSELIRTTLDAEK 207
Score = 26.9 bits (59), Expect = 7.7
Identities = 8/57 (14%), Positives = 17/57 (29%), Gaps = 6/57 (10%)
Query: 194 KENYNIVQVFKELLAQAKV----QYNLSPA--VRRRRQSLPNYIGTTGSASSKGRYM 244
+ Y + +++ +A Y S V +L + G + Y
Sbjct: 1633 MDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYS 1689
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP,
complex, structural G NPPSFA; HET: GDP; 2.35A
{Pyrococcus horikoshii}
Length = 357
Score = 37.1 bits (86), Expect = 0.004
Identities = 30/181 (16%), Positives = 69/181 (38%), Gaps = 32/181 (17%)
Query: 45 LQKDKRRVVVMGGARVGKSSIISQFLYDRF-ISRYKETVEELHRGEYELPDGAQLTLD-- 101
+ + VV+ G VGKS+++ + I+ Y T ++ G++E +D
Sbjct: 163 VDLEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTP 222
Query: 102 -ILD-------TSGAYQFPAMRELSISTADAFVLVYAVDDAST--------WDVVKDLRE 145
+LD A+R L +++Y D + + +++
Sbjct: 223 GLLDRPISERNEIEKQAILALRYL------GNLIIYIFDPSEHCGFPLEEQIHLFEEVHG 276
Query: 146 QIVNKRGLMVPIVVVGNKCELEFKDVRREIAETIALYDWQCGFVECSAKENYNIVQVFKE 205
+ + P +VV NK ++ ++ + + + + ++ SA + I V +E
Sbjct: 277 EFKDL-----PFLVVINKIDVADEENIKRLEKFVKEKGLN--PIKISALKGTGIDLVKEE 329
Query: 206 L 206
+
Sbjct: 330 I 330
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.5 bits (86), Expect = 0.004
Identities = 18/146 (12%), Positives = 45/146 (30%), Gaps = 25/146 (17%)
Query: 44 GLQKDK--RRVVVMGGARVGKSSIISQFLYD-RFISRYKETVEELHRGEYELPDGAQLTL 100
L + + + V++ G GK+ + + + + L+ P+ L
Sbjct: 143 ALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPE---TVL 199
Query: 101 DILDTSGAYQFPAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVV 160
++L YQ + + + ++ L + + L+V
Sbjct: 200 EMLQKL-LYQIDPNWTSRSDHSSN--IKLRIHSIQAE--LRRLLKSKPYENCLLV----- 249
Query: 161 GNKCELEFKDVRREIAETIALYDWQC 186
L +V+ A+ ++ C
Sbjct: 250 -----LL--NVQN--AKAWNAFNLSC 266
Score = 27.9 bits (61), Expect = 3.9
Identities = 33/218 (15%), Positives = 67/218 (30%), Gaps = 58/218 (26%)
Query: 60 VGKSSIISQ--FLYDRFISR----YKETVEELHRGEYE-LPDGAQLTLDILDTSGAYQ-F 111
+ +S L+ +S+ ++ VEE+ R Y+ L + + S + +
Sbjct: 55 IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMS--PIKTEQRQPSMMTRMY 112
Query: 112 PAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVN--KRGLM----VPIVVV----- 160
R+ + F + ++V R Q ++ L+ V++
Sbjct: 113 IEQRDRLYNDNQVF---------AKYNVS---RLQPYLKLRQALLELRPAKNVLIDGVLG 160
Query: 161 -GNKCELEFKDVRREIAETIALYDWQCGFVECSAKENYNI-------VQVFKELLAQ-AK 211
G K + + Y QC ++ I + +L K
Sbjct: 161 SG-KTWV--------ALDVCLSYKVQCKM-------DFKIFWLNLKNCNSPETVLEMLQK 204
Query: 212 VQYNLSPAVRRRRQSLPNYIGTTGSASSKGRYMLKRNS 249
+ Y + P R N S ++ R +LK
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET:
GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Length = 270
Score = 35.3 bits (81), Expect = 0.011
Identities = 21/135 (15%), Positives = 42/135 (31%), Gaps = 10/135 (7%)
Query: 46 QKDKRRVVVMGGARVGKSSIISQFL-YDRFISRYKETVEELHRGEYELPDGAQL----TL 100
+ ++VMG VGKSS ++ + ++ G L T
Sbjct: 36 DVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTP 95
Query: 101 DILDTSGAYQFPAM---RELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRG--LMV 155
+++ L T D + V +D ++ K + + I + G +
Sbjct: 96 GLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWN 155
Query: 156 PIVVVGNKCELEFKD 170
+V + D
Sbjct: 156 KAIVALTHAQFSPPD 170
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding,
HYDR magnesium, metal-binding, nucleotide-binding,
potassium, TR processing; HET: GDP FON; 3.20A {Nostoc
SP}
Length = 462
Score = 35.6 bits (83), Expect = 0.014
Identities = 24/111 (21%), Positives = 46/111 (41%), Gaps = 15/111 (13%)
Query: 119 ISTADAFVLVYAVDDASTWDV-VKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAE 177
+TAD +L +D A+ W +++ EQ+ ++ P+++V NK +L K + +
Sbjct: 301 ANTADLVLLT--IDAATGWTTGDQEIYEQVKHR-----PLILVMNKIDLVEKQLITSLEY 353
Query: 178 TIALYDWQCGFVECSAKENYNI---VQVFKELLAQAKVQYNLSPAVRRRRQ 225
+ V +A + I E++ KVQ +RQ
Sbjct: 354 PENITQI----VHTAAAQKQGIDSLETAILEIVQTGKVQAADMDLAINQRQ 400
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 34.3 bits (79), Expect = 0.019
Identities = 24/141 (17%), Positives = 47/141 (33%), Gaps = 24/141 (17%)
Query: 40 GTGVGLQKDKR-RVVVMG--GARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDGA 96
G G G + +++ G + GK+S+++ D TV D
Sbjct: 38 GGGSGGGGSYQPSIIIAGPQNS--GKTSLLTLLTTDSVR----PTVVSQ--EPLSAADYD 89
Query: 97 QLTLDILDTSGAYQF-PAMRE-LSISTADAFVLVYAVDDASTWDVVKDLRE--------- 145
+ ++D G + + + L L++ VD + E
Sbjct: 90 GSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSIT 149
Query: 146 QIVNKRGLMVPIVVVGNKCEL 166
+ + G + I++ NK EL
Sbjct: 150 ESSCENG--IDILIACNKSEL 168
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria,
structural genomics, structural genomics consortium,
SGC, unknown function; HET: GDP; 2.01A {Plasmodium
falciparum}
Length = 228
Score = 34.0 bits (78), Expect = 0.031
Identities = 33/187 (17%), Positives = 60/187 (32%), Gaps = 35/187 (18%)
Query: 44 GLQKDKRRVVVMGGARVGKSSIISQFLYDRFISR-------YKETVEELHRGEYELPDGA 96
+ K+ +++ G VGKSS ++ +SR Y T + L+ G ++
Sbjct: 24 SINPHKKTIILSGAPNVGKSSFMNI------VSRANVDVQSYSFTTKNLYVGHFDHKL-- 75
Query: 97 QLTLDILDTSGAYQFPAM-RELSISTADAF------VLVYAVDDASTWDVVKDLREQI-- 147
I+DT G R T V+++ +D + ++EQI
Sbjct: 76 -NKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISE--QCGLTIKEQINL 132
Query: 148 ---VNKRGLMVPIVVVGNKC-----ELEFKDVRREIAETIALYDWQCGFVECSAKENYNI 199
+ IV+ NK + D + I + + F S +
Sbjct: 133 FYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGV 192
Query: 200 VQVFKEL 206
Q
Sbjct: 193 EQAKITA 199
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 33.3 bits (77), Expect = 0.040
Identities = 18/93 (19%), Positives = 35/93 (37%), Gaps = 10/93 (10%)
Query: 119 ISTADAFVLVYAVDDASTWDV-VKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAE 177
I AD + + VD +T V ++ + + + +PI VV NK ++ + +
Sbjct: 81 IEQADRVLFM--VDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVN 138
Query: 178 TIALYDWQCGFVECSAKENYNIVQVFKELLAQA 210
AL + SA+ + + L
Sbjct: 139 GHAL-------IRLSARTGEGVDVLRNHLKQSM 164
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding,
hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1
c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Length = 482
Score = 33.3 bits (77), Expect = 0.060
Identities = 24/111 (21%), Positives = 44/111 (39%), Gaps = 15/111 (13%)
Query: 119 ISTADAFVLVYAVDDASTWDV-VKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAE 177
I AD + V +D +S D + + E+I NK +VV NK ++ K EI
Sbjct: 321 IEKADIVLFV--LDASSPLDEEDRKILERIKNK-----RYLVVINKVDVVEKINEEEIKN 373
Query: 178 TIALYDWQCGFVECSAKENYNIVQVFKELLAQAKVQYNLSPA---VRRRRQ 225
+ V+ SA + + + +E + + + + + RQ
Sbjct: 374 KLGT---DRHMVKISALKGEGL-EKLEESIYRETQEIFERGSDSLITNLRQ 420
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP;
1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A*
2j3e_A*
Length = 262
Score = 33.3 bits (76), Expect = 0.061
Identities = 17/141 (12%), Positives = 40/141 (28%), Gaps = 22/141 (15%)
Query: 46 QKDKRRVVVMGGARVGKSSIISQFL-YDRFISR-YKETVEELHRGEYELPDGAQLTL--- 100
+ V+V+G VGKSS ++ + ++ + G + +
Sbjct: 33 DMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM-GGFTINIIDT 91
Query: 101 -DILDTSGAYQFPAM---RELSISTADAFVLVYAVD-------DASTWDVVKDLREQIVN 149
+++ L T D + V +D D + + +
Sbjct: 92 PGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIW 151
Query: 150 KRGLMVPIVVVGNKCELEFKD 170
+ ++V + D
Sbjct: 152 CK-----TLLVLTHAQFSPPD 167
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC,
coiled coil, GTP- binding, nucleotide-binding, immune
system; HET: GDP; 2.15A {Homo sapiens}
Length = 239
Score = 33.0 bits (75), Expect = 0.068
Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 8/88 (9%)
Query: 25 RLRLHSLGTEST--SSSGTGVGLQKDKRRVVVMGGARVGKSSIISQFL-YDRFISRY--K 79
HS G E+ + + R+V++G GKS+ + L F S K
Sbjct: 3 HHHHHSSGRENLYFQGGPGRQEPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAK 62
Query: 80 ETVEELHRGEYELPDGAQLTLDILDTSG 107
++ + +L ++DT G
Sbjct: 63 SITKKCEKRSSSW-KETELV--VVDTPG 87
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 32.0 bits (73), Expect = 0.11
Identities = 23/142 (16%), Positives = 48/142 (33%), Gaps = 23/142 (16%)
Query: 38 SSGTGVGLQKDKRRVVVMG--GARVGKSSIISQFLYDRFISRYKETVEELHRGEYELPDG 95
S G+ + + +++ G + GK+S+++ D TV D
Sbjct: 1 GSHMGIKQKSYQPSIIIAGPQNS--GKTSLLTLLTTDSVR----PTVVSQ--EPLSAADY 52
Query: 96 AQLTLDILDTSGAYQF-PAMRE-LSISTADAFVLVYAVDDASTWDVVKDLRE-------- 145
+ ++D G + + + L L++ VD + E
Sbjct: 53 DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSI 112
Query: 146 -QIVNKRGLMVPIVVVGNKCEL 166
+ + G + I++ NK EL
Sbjct: 113 TESSCENG--IDILIACNKSEL 132
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics
consortium, SGC, immune system; HET: GDP; 2.21A {Homo
sapiens} PDB: 3v70_A*
Length = 247
Score = 31.6 bits (71), Expect = 0.17
Identities = 33/168 (19%), Positives = 60/168 (35%), Gaps = 25/168 (14%)
Query: 27 RLHSLGTESTSSSGTGVGLQKDKRRVVVMGGARVGKSSIISQFL-YDRFISRYK-ETVEE 84
HS G E+ G + RR++++G GKS+ + L RF SR +V
Sbjct: 5 HHHSSGRENLYFQG------ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTR 58
Query: 85 LHRGEYELPDGAQLTLDILDTSGAYQFPAMRE------------LSISTADAFVLVYAVD 132
D + ++DT + + LS A +LV +
Sbjct: 59 ACTTGSRRWDKCHVE--VVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLG 116
Query: 133 --DASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDVRREIAET 178
A V+ +R+ + + L ++V K +L + ++ T
Sbjct: 117 RFTAQDQQAVRQVRD-MFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNT 163
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural
genomics, BSGC structure funded by NIH, protein
structure initiative, PSI; HET: GDP; 2.80A {Thermotoga
maritima} SCOP: b.40.4.5 c.37.1.8
Length = 301
Score = 31.3 bits (72), Expect = 0.21
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 155 VPIVVVGNKCELEFKDVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLA 208
+ V+V NK +L +D R++ E +Y V+ SAK I ++ KE L
Sbjct: 116 LETVMVINKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEEL-KEYLK 168
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling
protein; HET: GDP; 2.36A {Geobacillus
stearothermophilus}
Length = 369
Score = 31.5 bits (71), Expect = 0.22
Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 9/45 (20%)
Query: 35 STSSSGTGVGLQ---------KDKRRVVVMGGARVGKSSIISQFL 70
S+ G+G+ ++ V V+G VGKS+ I++ +
Sbjct: 139 CLVSAAKGIGMAKVMEAINRYREGGDVYVVGCTNVGKSTFINRII 183
Score = 27.2 bits (60), Expect = 4.9
Identities = 16/93 (17%), Positives = 35/93 (37%), Gaps = 13/93 (13%)
Query: 127 LVYAVDDASTWD--VVKDLREQIVNKRGLMVPIVVVGNKCELEFKDV-RREIAETIALYD 183
LV + D ++ + L + PI++VGNK +L + V ++ +
Sbjct: 74 LVVNIVDIFDFNGSFIPGLPRFAADN-----PILLVGNKADLLPRSVKYPKLLRWMRRMA 128
Query: 184 WQCGF-----VECSAKENYNIVQVFKELLAQAK 211
+ G SA + + +V + + +
Sbjct: 129 EELGLCPVDVCLVSAAKGIGMAKVMEAINRYRE 161
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Length = 302
Score = 31.4 bits (72), Expect = 0.26
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 155 VPIVVVGNKCELEFKDVRREIAETIALYDWQCGF--VECSAKENYNIVQVFKELLA 208
V V+V NK +L ++ ++E+ I++Y G+ ++ SAK I ++ + L
Sbjct: 111 VEPVIVFNKIDLLNEEEKKELERWISIYR-DAGYDVLKVSAKTGEGIDEL-VDYLE 164
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved
in replication initiation, csgid, IDP90222; HET: DGI;
1.80A {Bacillus anthracis str}
Length = 368
Score = 31.5 bits (71), Expect = 0.27
Identities = 19/108 (17%), Positives = 39/108 (36%), Gaps = 18/108 (16%)
Query: 114 MRELSISTADAFVLVYAVDDASTWD--VVKDLREQIVNKRGLMVPIVVVGNKCEL----- 166
+R L+ + LV + D ++ + L + N +++VGNK +L
Sbjct: 60 LRILN-GIGKSDALVVKIVDIFDFNGSWLPGLHRFVGNN-----KVLLVGNKADLIPKSV 113
Query: 167 ---EFKDVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQAK 211
+ K R A+ + L + SA + I ++ +
Sbjct: 114 KHDKVKHWMRYSAKQLGLKPEDVFLI--SAAKGQGIAELADAIEYYRG 159
Score = 30.7 bits (69), Expect = 0.45
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 9/42 (21%)
Query: 38 SSGTGVGL---------QKDKRRVVVMGGARVGKSSIISQFL 70
S+ G G+ + + V V+G VGKS+ I++ +
Sbjct: 140 SAAKGQGIAELADAIEYYRGGKDVYVVGCTNVGKSTFINRMI 181
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding,
hydrolase, nucleotide-binding; HET: GDP; 2.25A
{Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Length = 358
Score = 30.3 bits (69), Expect = 0.53
Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
Query: 155 VPIVVVGNKCELEFKDVRREIAETIALYDWQCGF--VECSAKENYNIVQVFKELLA 208
V ++V NK +L + + E + +Y G+ + S+ + + +E L
Sbjct: 161 VEPLIVLNKIDLLDDEGMDFVNEQMDIYR-NIGYRVLMVSSHTQDGLKPL-EEALT 214
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET:
GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP:
b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Length = 594
Score = 30.3 bits (69), Expect = 0.56
Identities = 21/147 (14%), Positives = 39/147 (26%), Gaps = 35/147 (23%)
Query: 75 ISRYKETVEELHRGEYELPDGAQLTLDILDTSGAYQFPAMRELSISTADAFVLVYAVDDA 134
+ + + + L +DT G F +R+ + AD +L+ +++
Sbjct: 49 MDVIEGICGDFLKKFSIRETLPGLF--FIDTPGHEAFTTLRKRGGALADLAILIVDINE- 105
Query: 135 STWDVVKDLREQIVNKRGLM--------------VPIVVVGNKCELEFKDVRREIAETIA 180
G P VV NK + E +
Sbjct: 106 -----------------GFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFME 148
Query: 181 LYDWQCGFVECSAKEN-YNIVQVFKEL 206
+ Q V+ Y +V E
Sbjct: 149 TFSKQDIQVQQKLDTKVYELVGKLHEE 175
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus
abyssi}
Length = 350
Score = 29.7 bits (66), Expect = 0.87
Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 10/89 (11%)
Query: 47 KDKRRVVVMGGARVGKSSIISQFLYDR----------FISRYKETVEELHRGEYELPDGA 96
++ +++G RVGKSS++ FL +R + R T EEL +
Sbjct: 29 ENYPLTLLLGIRRVGKSSLLRAFLNERPGILIDCRELYAERGHITREELIKELQSTISPF 88
Query: 97 QLTLDILDTSGAYQFPAMRELSISTADAF 125
Q S +F + +S + F
Sbjct: 89 QKFQSKFKISLNLKFLTLEPRKLSLREVF 117
>3pnz_A Phosphotriesterase family protein; amidohydrolase fold; HET: KCX;
1.60A {Listeria monocytogenes serotype 4b
strorganism_taxid}
Length = 330
Score = 29.7 bits (66), Expect = 0.96
Identities = 13/102 (12%), Positives = 30/102 (29%)
Query: 112 PAMRELSISTADAFVLVYAVDDASTWDVVKDLREQIVNKRGLMVPIVVVGNKCELEFKDV 171
+ ++S T V + + WD + + + + + V
Sbjct: 76 LDVAQISKETGIQIVGTAGFNKSFLWDGKIKPELKPIIGDFETYYEWIENTTTDKLTEFV 135
Query: 172 RREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQAKVQ 213
E+ + ++ G V+ N K + A A+
Sbjct: 136 VNEVENGLEGTPYKAGQVKFGTGYNMITPLEEKTIRAVARAH 177
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium
tuberculosis} PDB: 3md0_A* 3nxs_A* 3tk1_A*
Length = 355
Score = 29.4 bits (66), Expect = 1.2
Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 11/89 (12%)
Query: 150 KRGLM-VPIVVVGNKCELEFKD----VRREIAETIALY-----DWQCGFVECSAKENYNI 199
K+G++ + +VV NK + E RE++ I L W+ + SA E +
Sbjct: 212 KKGVLELADIVVVNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGL 271
Query: 200 VQVFKELLA-QAKVQYNLSPAVRRRRQSL 227
+++ + + + RRR Q +
Sbjct: 272 AELWDTVERHRQVLTGAGEFDARRRDQQV 300
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport
protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo
sapiens}
Length = 349
Score = 29.1 bits (65), Expect = 1.5
Identities = 15/89 (16%), Positives = 36/89 (40%), Gaps = 11/89 (12%)
Query: 150 KRGLM-VPIVVVGNKCELEFKD----VRREIAETIALY-----DWQCGFVECSAKENYNI 199
KRG++ + +V K + + ++ E + L W+ + SA+ I
Sbjct: 207 KRGIIEMADLVAVTKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGI 266
Query: 200 VQVFKELLA-QAKVQYNLSPAVRRRRQSL 227
+++ ++ Q + + +RR+Q
Sbjct: 267 SEMWDKMKDFQDLMLASGELTAKRRKQQK 295
>1wb1_A Translation elongation factor SELB; selenocysteine, protein
synthesis, selenium, ribosome; HET: GDP DXC; 3.0A
{Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1
b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Length = 482
Score = 28.9 bits (65), Expect = 1.9
Identities = 15/100 (15%), Positives = 35/100 (35%), Gaps = 20/100 (20%)
Query: 123 DAFVLVYAVDD---ASTWDVVKDLREQIVNKRGLMVPIVVVGNKC------ELEF--KDV 171
D ++V + T E ++ +PI+VV K E++ +
Sbjct: 98 DLALIVVDAKEGPKTQT-------GEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIM 150
Query: 172 RREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQAK 211
+ + T L + + SAK + + ++ ++
Sbjct: 151 KSILQSTHNLKN--SSIIPISAKTGFGVDELKNLIITTLN 188
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane,
transmembra membrane protein, signaling protein; 1.99A
{Mus musculus} PDB: 3ryt_A*
Length = 627
Score = 28.2 bits (62), Expect = 2.8
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 59 RVGKSSIISQFLYDRFISRYKETVEELHRGEYELP 93
R+GK S ++ LY + I YK VE +R ++
Sbjct: 521 RLGKDSPSNKLLYAKDIPNYKSWVERYYRDIAKMA 555
>2r8u_A Microtubule-associated protein RP/EB family member 1; cytoskeleton,
acetylation, cell cycle, cell division, cytoplasm,
mitosis, phosphorylation; 1.35A {Homo sapiens} SCOP:
a.40.1.1 PDB: 1vka_A 1txq_B 1wu9_A 2hkq_A 2hl5_A 3tq7_A
3gjo_A 1yib_A 1yig_A
Length = 268
Score = 27.5 bits (60), Expect = 3.6
Identities = 13/63 (20%), Positives = 23/63 (36%)
Query: 189 VECSAKENYNIVQVFKELLAQAKVQYNLSPAVRRRRQSLPNYIGTTGSASSKGRYMLKRN 248
V+ ++N+ VQ FK+ + P R+ Q A +K + L +
Sbjct: 97 VKGKFQDNFEFVQWFKKFFDANYDGKDYDPVAARQGQETAVAPSLVAPALNKPKKPLTSS 156
Query: 249 SCT 251
S
Sbjct: 157 SAA 159
>1f60_A Elongation factor EEF1A; protein-protein complex, translation;
1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1
b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A*
2b7c_A
Length = 458
Score = 27.7 bits (62), Expect = 3.8
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
Query: 44 GLQKDKRRVVVMGGARVGKSSIISQFLYD------RFISRYKETVEELHRGEYEL 92
G +K VVV+G GKS+ +Y R I ++++ EL +G ++
Sbjct: 2 GKEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKY 56
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane,
transmembrane receptor, cell membrane, glycoprotein,
phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D*
3su8_X*
Length = 644
Score = 27.8 bits (61), Expect = 4.0
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 59 RVGKSSIISQFLYDRFISRYKETVEELHRGEYELP 93
++G+ S I++ LY R I RYK VE + +
Sbjct: 535 KLGRDSPINKLLYARDIPRYKRMVERYYADIRQTV 569
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Length = 260
Score = 27.3 bits (60), Expect = 4.0
Identities = 17/127 (13%), Positives = 40/127 (31%), Gaps = 19/127 (14%)
Query: 35 STSSSGTGVGLQKDKRRVVVMGGARVGKSSIISQFL-YDRFISR--YKETVEELHRGEYE 91
G + + R++++G GKS+ + L F S+ + + + +
Sbjct: 8 HWGPHAKGQCASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGS 67
Query: 92 LPDGAQLTLDILDTSG-----------AYQFPAMRELSISTADAFVLVYAVD--DASTWD 138
++ I+DT + LS +LV + +
Sbjct: 68 W-GNREIV--IIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQ 124
Query: 139 VVKDLRE 145
+ ++E
Sbjct: 125 AAQRVKE 131
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 27.6 bits (60), Expect = 4.9
Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 4/61 (6%)
Query: 52 VVVMGGARVGKSSIISQFLYDRFISRYKETVEELHRG----EYELPDGAQLTLDILDTSG 107
V ++G R GKS ++++ + TV+ +G P L +LDT G
Sbjct: 41 VAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEG 100
Query: 108 A 108
Sbjct: 101 L 101
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate,
plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP:
c.36.1.6 c.36.1.10 c.48.1.1
Length = 675
Score = 27.4 bits (62), Expect = 5.2
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 224 RQSLPNYIGTTGSASSKGRYMLKRNSC 250
RQ LP+ GT+ KG Y + NS
Sbjct: 533 RQKLPHLPGTSIEGVEKGGYTISDNST 559
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP,
signaling protein; HET: GNP; 2.00A {Thermotoga maritima}
PDB: 3cnn_A* 3cno_A*
Length = 262
Score = 27.2 bits (61), Expect = 5.3
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 6/37 (16%)
Query: 36 TSSSGTGVGLQKDKR------RVVVMGGARVGKSSII 66
T+ G + K RV+++G GKS+II
Sbjct: 80 TTHKGEPRKVLLKKLSFDRLARVLIVGVPNTGKSTII 116
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA
binding motif, transcriptional regulator, bacter
antitoxin, Zn binding protein, transcription
regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB:
3gn5_A* 3gn5_B* 2kz8_A
Length = 133
Score = 26.7 bits (58), Expect = 5.5
Identities = 9/62 (14%), Positives = 20/62 (32%)
Query: 166 LEFKDVRREIAETIALYDWQCGFVECSAKENYNIVQVFKELLAQAKVQYNLSPAVRRRRQ 225
F+ + + LY C + +E+ + K A + + + R+
Sbjct: 22 YTFRGRKTVLKGIHGLYCVHCEESIMNKEESDAFMAQVKAFRASVNAETVAPEFIVKVRK 81
Query: 226 SL 227
L
Sbjct: 82 KL 83
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein
structure initiati YORK structural genomics research
consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Length = 202
Score = 27.0 bits (59), Expect = 5.5
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 33 TESTSSSGTGVGLQKDKRRVVVMGGARVGKSSI 65
S +++ +VVMG + GKSS+
Sbjct: 2 VMSIEYKSEAAAVRRFPGSIVVMGVSGSGKSSV 34
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase,
alpha/beta structure, protein biosynthesis,
translation; HET: GDP; 1.80A {Sulfolobus solfataricus}
SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Length = 435
Score = 27.3 bits (61), Expect = 5.8
Identities = 9/47 (19%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Query: 52 VVVMGGARVGKSSIISQFLYD------RFISRYKETVEELHRGEYEL 92
++V+G GKS+++ + L D + + +E ++L + +
Sbjct: 9 LIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKF 55
>1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase;
CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC,
sialic acid, glycosylation; HET: NCC; 2.80A {Mus
musculus} SCOP: c.68.1.13
Length = 229
Score = 26.8 bits (60), Expect = 6.0
Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 5/56 (8%)
Query: 193 AKENYNIVQVFKELLAQAKVQYNLSPAVRRRRQSLPNYIGTTGSASSKGRYMLKRN 248
+ + ++ + + NL+PA R RRQ + GS Y KR+
Sbjct: 132 VRRHQFRWSEIQKGVREVTEPLNLNPAKRPRRQDWDGELYENGSF-----YFAKRH 182
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem
G-domains, ligand binding protein; HET: GDP; 1.90A
{Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Length = 439
Score = 27.1 bits (61), Expect = 6.2
Identities = 16/77 (20%), Positives = 23/77 (29%), Gaps = 23/77 (29%)
Query: 112 PAMR---ELSISTADAFVLVYAVD--------DASTWDVVKDLREQIVNKRGLMVPIVVV 160
M+ I AD + V VD D + LR+ ++V
Sbjct: 69 QKMKEVTLNMIREADLVLFV--VDGKRGITKEDE---SLADFLRKS--TV-----DTILV 116
Query: 161 GNKCELEFKDVRREIAE 177
NK E + R E
Sbjct: 117 ANKAENLREFEREVKPE 133
>2fna_A Conserved hypothetical protein; structural genomics, joint center
for structural genomics, J protein structure
initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus
solfataricus} SCOP: a.4.5.11 c.37.1.20
Length = 357
Score = 27.0 bits (59), Expect = 6.8
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 49 KRRVVVMGGARVGKSSIISQFL 70
+V+G R GKSSII +
Sbjct: 30 APITLVLGLRRTGKSSIIKIGI 51
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural
genomics; HET: GDP; 1.96A {Thermus thermophilus}
Length = 161
Score = 26.3 bits (59), Expect = 8.3
Identities = 27/138 (19%), Positives = 52/138 (37%), Gaps = 44/138 (31%)
Query: 51 RVVVMGGARVGKSSIISQFLYDRFISRYKETVEEL-------HRGEYELPDGAQLTLDIL 103
+VV++G VGKSS L++R + + V ++ G E ++
Sbjct: 3 KVVIVGRPNVGKSS-----LFNRLLKKRSAVVADVPGVTRDLKEGVVETDR---GRFLLV 54
Query: 104 DTSGAYQF-----PAMR---ELSISTADAFVLVYAVD--------DASTWDVVKDLREQI 147
DT G ++ + ++ A+ + VD D +V + LR +
Sbjct: 55 DTGG-LWSGDKWEKKIQEKVDRALEDAEVVLFA--VDGRAELTQADY---EVAEYLRRK- 107
Query: 148 VNKRGLMVPIVVVGNKCE 165
K P+++V K +
Sbjct: 108 -GK-----PVILVATKVD 119
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET:
GDP; 2.50A {Bacillus subtilis}
Length = 436
Score = 26.7 bits (60), Expect = 9.2
Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 17/62 (27%)
Query: 112 PAMR---ELSISTADAFVLVYAVD---DASTWD--VVKDLREQIVNKRGLMVPIVVVGNK 163
+R E+++ AD + + V+ + D V K L K P+V+ NK
Sbjct: 70 AQIRQQAEIAMDEADVIIFM--VNGREGVTAADEEVAKILYRT--KK-----PVVLAVNK 120
Query: 164 CE 165
+
Sbjct: 121 LD 122
>1scz_A E2, dihydrolipoamide succinyltransferase; COA-dependent
acyltransferase, CAT-like, alpha and beta (2 L mixed
beta-sheeet of 6 strands; 2.20A {Escherichia coli} SCOP:
c.43.1.1 PDB: 1e2o_A 1c4t_A
Length = 233
Score = 26.4 bits (59), Expect = 9.3
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 151 RGLMVPIVVVGNKCELEFKDVRREIAE 177
RGL+ P V+ + L D+ ++I E
Sbjct: 105 RGLVTP--VLRDVDTLGMADIEKKIKE 129
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site,
oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter
simplex}
Length = 690
Score = 26.5 bits (59), Expect = 9.7
Identities = 8/51 (15%), Positives = 16/51 (31%), Gaps = 12/51 (23%)
Query: 42 GVGLQKDKRRVVVMGGARVGKSSIISQFLY-----DRFISRYKETVEELHR 87
G V + +S I+ F+ D+ + K + +H
Sbjct: 57 GWSA-------VCTEQVEIHATSDIAPFIELRIWDDQDLPALKRIADAIHE 100
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.133 0.381
Gapped
Lambda K H
0.267 0.0777 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,867,485
Number of extensions: 229776
Number of successful extensions: 911
Number of sequences better than 10.0: 1
Number of HSP's gapped: 683
Number of HSP's successfully gapped: 159
Length of query: 253
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 162
Effective length of database: 4,160,982
Effective search space: 674079084
Effective search space used: 674079084
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.3 bits)