BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5490
(352 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/157 (38%), Positives = 84/157 (53%), Gaps = 34/157 (21%)
Query: 27 ESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGA 86
+PL LAA GH+++ LL+E GA +VN + +PL LAA GH+++ LL+E GA
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGA---DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 87 NIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVAD 146
++ + G TPL AAR GH E+V +LL+ GA +NA
Sbjct: 60 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD--------------------- 98
Query: 147 FLLKNGANIELGASTPLMEAAQEGHLELVRYLLDSGA 183
KNG TPL AA+ GHLE+V+ LL++GA
Sbjct: 99 ---KNG-------RTPLHLAARNGHLEVVKLLLEAGA 125
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/126 (39%), Positives = 70/126 (55%), Gaps = 16/126 (12%)
Query: 7 ESPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIE 53
+PL LAA GH VN + +PL LAA GH+++ LL+E GA
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA--- 59
Query: 54 EVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCV 113
+VN + +PL LAA GH+++ LL+E GA++ + G TPL AAR GH E+V +
Sbjct: 60 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL 119
Query: 114 LLQKGA 119
LL+ GA
Sbjct: 120 LLEAGA 125
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 52/92 (56%), Gaps = 4/92 (4%)
Query: 95 GYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNGAN 154
G TPL AAR GH E+V +LL+ GA +NA G L+V LL+ GA+
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNA-KDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 155 I---ELGASTPLMEAAQEGHLELVRYLLDSGA 183
+ + TPL AA+ GHLE+V+ LL++GA
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 70/112 (62%), Gaps = 3/112 (2%)
Query: 12 LAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAAC 71
L A G VN DS ++PL LAA GH+++ +L++ GA +VN ++PL LAA
Sbjct: 33 LMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGA---DVNAADKMGDTPLHLAAL 89
Query: 72 GGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINA 123
GH+++ +L++ GA++ + G+TPL AA GH E+V VLL+ GA +NA
Sbjct: 90 YGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNA 141
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 72/151 (47%), Gaps = 34/151 (22%)
Query: 33 AACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVN 92
AA G D +L+ GA +VN DS ++PL LAA GH+++ +L++ GA++ +
Sbjct: 21 AARAGQDDEVRILMANGA---DVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAAD 77
Query: 93 DEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNG 152
G TPL AA GH E+V VLL+ GA +NA GF
Sbjct: 78 KMGDTPLHLAALYGHLEIVEVLLKNGADVNA------------TDTYGF----------- 114
Query: 153 ANIELGASTPLMEAAQEGHLELVRYLLDSGA 183
TPL AA GHLE+V LL GA
Sbjct: 115 --------TPLHLAADAGHLEIVEVLLKYGA 137
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 67/125 (53%), Gaps = 18/125 (14%)
Query: 4 DSFESPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGA 50
DS ++PL LAA GH VN ++PL LAA GH+++ +L++ GA
Sbjct: 45 DSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGA 104
Query: 51 NIEEVNMPTDSFE-SPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEE 109
++ TD++ +PL LAA GH+++ +L++ GA++ + G T + G+E+
Sbjct: 105 DVN----ATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNED 160
Query: 110 MVCVL 114
+ +L
Sbjct: 161 LAEIL 165
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Query: 98 PLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNGANIEL 157
L+EAAR G ++ V +L+ GA +NA G L++ + LLK+GA++
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNA-EDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNA 75
Query: 158 G---ASTPLMEAAQEGHLELVRYLLDSGA 183
TPL AA GHLE+V LL +GA
Sbjct: 76 ADKMGDTPLHLAALYGHLEIVEVLLKNGA 104
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 69/114 (60%), Gaps = 3/114 (2%)
Query: 11 TLAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAA 70
L A G VN +PL LAA GH+++ +L++ GA+ VN +PL LAA
Sbjct: 20 ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD---VNAKDKDGYTPLHLAA 76
Query: 71 CGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAH 124
GH+++ +L++ GA++ + +GYTPL AAREGH E+V VLL+ GA +NA
Sbjct: 77 REGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQ 130
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 77/151 (50%), Gaps = 34/151 (22%)
Query: 33 AACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVN 92
AA G D +L+ GA+ VN +PL LAA GH+++ +L++ GA++ +
Sbjct: 9 AARAGQDDEVRILMANGAD---VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 65
Query: 93 DEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNG 152
+GYTPL AAREGH E+V VLL+ GA +NA K+G
Sbjct: 66 KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD------------------------KDG 101
Query: 153 ANIELGASTPLMEAAQEGHLELVRYLLDSGA 183
TPL AA+EGHLE+V LL +GA
Sbjct: 102 -------YTPLHLAAREGHLEIVEVLLKAGA 125
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 69/113 (61%), Gaps = 3/113 (2%)
Query: 11 TLAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAA 70
L A G VN +PL LAA GH+++ +L++ GA+ VN +PL LAA
Sbjct: 20 ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD---VNAKDKDGYTPLHLAA 76
Query: 71 CGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINA 123
GH+++ +L++ GA++ + +GYTPL AAREGH E+V VLL+ GA +NA
Sbjct: 77 REGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA 129
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 77/151 (50%), Gaps = 34/151 (22%)
Query: 33 AACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVN 92
AA G D +L+ GA+ VN +PL LAA GH+++ +L++ GA++ +
Sbjct: 9 AARAGQDDEVRILMANGAD---VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 65
Query: 93 DEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNG 152
+GYTPL AAREGH E+V VLL+ GA +NA K+G
Sbjct: 66 KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD------------------------KDG 101
Query: 153 ANIELGASTPLMEAAQEGHLELVRYLLDSGA 183
TPL AA+EGHLE+V LL +GA
Sbjct: 102 -------YTPLHLAAREGHLEIVEVLLKAGA 125
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 69/114 (60%), Gaps = 3/114 (2%)
Query: 11 TLAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAA 70
L A G VN +PL LAA GH+++ +L++ GA+ VN +PL LAA
Sbjct: 32 ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD---VNAKDKDGYTPLHLAA 88
Query: 71 CGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAH 124
GH+++ +L++ GA++ + +GYTPL AAREGH E+V VLL+ GA +NA
Sbjct: 89 REGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQ 142
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 77/151 (50%), Gaps = 34/151 (22%)
Query: 33 AACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVN 92
AA G D +L+ GA+ VN +PL LAA GH+++ +L++ GA++ +
Sbjct: 21 AARAGQDDEVRILMANGAD---VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 77
Query: 93 DEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNG 152
+GYTPL AAREGH E+V VLL+ GA +NA K+G
Sbjct: 78 KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD------------------------KDG 113
Query: 153 ANIELGASTPLMEAAQEGHLELVRYLLDSGA 183
TPL AA+EGHLE+V LL +GA
Sbjct: 114 -------YTPLHLAAREGHLEIVEVLLKAGA 137
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 16/120 (13%)
Query: 8 SPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEE 54
+PL LAA GH VN +PL LAA GH+++ +L++ GA+
Sbjct: 49 TPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD--- 105
Query: 55 VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVL 114
VN +PL LAA GH+++ +L++ GA++ + G T + G+E++ +L
Sbjct: 106 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 78.2 bits (191), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 63/111 (56%), Gaps = 3/111 (2%)
Query: 12 LAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAAC 71
L G VN +PL AA GH ++ LLI +GA +VN +PL AA
Sbjct: 23 LIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGA---DVNAKDSDGRTPLHYAAK 79
Query: 72 GGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKIN 122
GH ++ LLI +GA++ + +G TPL AA+EGH+E+V +L+ KGA +N
Sbjct: 80 EGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVN 130
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 73/154 (47%), Gaps = 34/154 (22%)
Query: 30 LTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIE 89
L AA G+ D LIE GA+ VN +PL AA GH ++ LLI +GA++
Sbjct: 8 LIEAAENGNKDRVKDLIENGAD---VNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVN 64
Query: 90 EVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLL 149
+ +G TPL AA+EGH+E+V +L+ KGA +NA
Sbjct: 65 AKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSD---------------------- 102
Query: 150 KNGANIELGASTPLMEAAQEGHLELVRYLLDSGA 183
TPL AA+EGH E+V+ L+ GA
Sbjct: 103 ---------GRTPLHYAAKEGHKEIVKLLISKGA 127
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
Query: 12 LAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAAC 71
L + G VN +PL AA GH ++ LLI +GA+ VN +PL AA
Sbjct: 56 LISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGAD---VNAKDSDGRTPLHYAAK 112
Query: 72 GGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGA 119
GH ++ LLI +GA++ + +G TPL A G+EE+V +L ++G
Sbjct: 113 EGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 71/112 (63%), Gaps = 3/112 (2%)
Query: 12 LAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAAC 71
L A G VN + +PL LAA GH+++ +L++ GA +VN + +PL LAA
Sbjct: 33 LMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGA---DVNASDLTGITPLHLAAA 89
Query: 72 GGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINA 123
GH+++ +L++ GA++ +++G+TPL AA+ GH E+V VLL+ GA +NA
Sbjct: 90 TGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNA 141
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 65/118 (55%), Gaps = 4/118 (3%)
Query: 69 AACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXX 128
AA G D +L+ GA++ +++GYTPL AA GH E+V VLL+ GA +NA
Sbjct: 21 AARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNA-SDLT 79
Query: 129 XXXXXXXXCCGGFLDVADFLLKNGANI---ELGASTPLMEAAQEGHLELVRYLLDSGA 183
G L++ + LLK+GA++ + TPL AA+ GHLE+V LL GA
Sbjct: 80 GITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGA 137
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
Query: 98 PLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNGANI-- 155
L+EAAR G ++ V +L+ GA +NA G L++ + LLKNGA++
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNA-TDNDGYTPLHLAASNGHLEIVEVLLKNGADVNA 75
Query: 156 -ELGASTPLMEAAQEGHLELVRYLLDSGA 183
+L TPL AA GHLE+V LL GA
Sbjct: 76 SDLTGITPLHLAAATGHLEIVEVLLKHGA 104
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 62/120 (51%), Gaps = 16/120 (13%)
Query: 8 SPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEE 54
+PL LAA GH VN + +PL LAA GH+++ +L++ GA +
Sbjct: 49 TPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGA---D 105
Query: 55 VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVL 114
VN + +PL LAA GH+++ +L++ GA++ + G T + G+E++ +L
Sbjct: 106 VNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 73/113 (64%), Gaps = 5/113 (4%)
Query: 12 LAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSF-ESPLTLAA 70
L A G VN ++ +PL LAA GH+++ +L++ GA+++ +D F +PL LAA
Sbjct: 33 LMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVD----ASDVFGYTPLHLAA 88
Query: 71 CGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINA 123
GH+++ +L++ GA++ ++ +G TPL AA+ G+ E+V VLL+ GA +NA
Sbjct: 89 YWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNA 141
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 70/123 (56%), Gaps = 4/123 (3%)
Query: 33 AACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVN 92
AA G D +L+ GA +VN ++ +PL LAA GH+++ +L++ GA+++ +
Sbjct: 21 AARAGQDDEVRILMANGA---DVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASD 77
Query: 93 DEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNG 152
GYTPL AA GH E+V VLL+ GA +NA G+L++ + LLK+G
Sbjct: 78 VFGYTPLHLAAYWGHLEIVEVLLKNGADVNA-MDSDGMTPLHLAAKWGYLEIVEVLLKHG 136
Query: 153 ANI 155
A++
Sbjct: 137 ADV 139
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 63/118 (53%), Gaps = 4/118 (3%)
Query: 69 AACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXX 128
AA G D +L+ GA++ ++ G TPL AA GH E+V VLL+ GA ++A
Sbjct: 21 AARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDA-SDVF 79
Query: 129 XXXXXXXXCCGGFLDVADFLLKNGANIELGAS---TPLMEAAQEGHLELVRYLLDSGA 183
G L++ + LLKNGA++ S TPL AA+ G+LE+V LL GA
Sbjct: 80 GYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGA 137
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 98 PLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNGANI-- 155
L+EAAR G ++ V +L+ GA +NA G L++ + LLK+GA++
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNA-ADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDA 75
Query: 156 -ELGASTPLMEAAQEGHLELVRYLLDSGA 183
++ TPL AA GHLE+V LL +GA
Sbjct: 76 SDVFGYTPLHLAAYWGHLEIVEVLLKNGA 104
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 65/120 (54%), Gaps = 16/120 (13%)
Query: 8 SPLTLAACGGHVNM------------PTDSF-ESPLTLAACGGHVDLALLLIERGANIEE 54
+PL LAA GH+ + +D F +PL LAA GH+++ +L++ GA++
Sbjct: 49 TPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNA 108
Query: 55 VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVL 114
M +D +PL LAA G++++ +L++ GA++ + G T + G+E++ +L
Sbjct: 109 --MDSDGM-TPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 69/112 (61%), Gaps = 3/112 (2%)
Query: 12 LAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAAC 71
L A G VN +PL LAA GH+++ +L++ GA +VN + +PL LAA
Sbjct: 33 LMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGA---DVNAWDNYGATPLHLAAD 89
Query: 72 GGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINA 123
GH+++ +L++ GA++ + EG+TPL AA +GH E+V VLL+ GA +NA
Sbjct: 90 NGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNA 141
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 64/118 (54%), Gaps = 4/118 (3%)
Query: 69 AACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXX 128
AA G D +L+ GA++ + G+TPL AA+ GH E+V VLL+ GA +NA
Sbjct: 21 AARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNA-WDNY 79
Query: 129 XXXXXXXXCCGGFLDVADFLLKNGANI---ELGASTPLMEAAQEGHLELVRYLLDSGA 183
G L++ + LLK+GA++ + TPL AA +GHLE+V LL GA
Sbjct: 80 GATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGA 137
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 98 PLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNGANIEL 157
L+EAAR G ++ V +L+ GA +NA G L++ + LLK GA++
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNA-TDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNA 75
Query: 158 G---ASTPLMEAAQEGHLELVRYLLDSGA 183
+TPL AA GHLE+V LL GA
Sbjct: 76 WDNYGATPLHLAADNGHLEIVEVLLKHGA 104
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 61/120 (50%), Gaps = 16/120 (13%)
Query: 8 SPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEE 54
+PL LAA GH VN + +PL LAA GH+++ +L++ GA +
Sbjct: 49 TPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGA---D 105
Query: 55 VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVL 114
VN +PL LAA GH+++ +L++ GA++ + G T + G+E++ +L
Sbjct: 106 VNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 90/174 (51%), Gaps = 13/174 (7%)
Query: 16 GGHVNMPTDSFESPLTLAACGGHVDLALLLIERG--ANIEEVNMPTDSFESPLTLAACGG 73
GG + P + +PL +AA V++A L++ G AN E V T PL LAA G
Sbjct: 202 GGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVT-----PLHLAAQEG 256
Query: 74 HVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXX 133
H ++ LL+ + AN N G TPL A+EGH + VL++ G ++A
Sbjct: 257 HAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLH 316
Query: 134 XXXCCGGFLDVADFLLKNGANI----ELGASTPLMEAAQEGHLELVRYLLDSGA 183
G + + FLL++ A++ +LG S PL +AAQ+GH ++V LL +GA
Sbjct: 317 VASHYGN-IKLVKFLLQHQADVNAKTKLGYS-PLHQAAQQGHTDIVTLLLKNGA 368
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 85/178 (47%), Gaps = 7/178 (3%)
Query: 4 DSFESPLTLAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFE 63
+ E +L GG N + +PL LAA GH ++ LL+ + AN N+ S
Sbjct: 223 NQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQAN---GNLGNKSGL 279
Query: 64 SPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINA 123
+PL L A GHV +A +LI+ G ++ GYTPL A+ G+ ++V LLQ A +NA
Sbjct: 280 TPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNA 339
Query: 124 HXXXXXXXXXXXXCCGGFLDVADFLLKNGAN---IELGASTPLMEAAQEGHLELVRYL 178
G D+ LLKNGA+ + +TPL A + G++ + L
Sbjct: 340 -KTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVL 396
Score = 71.2 bits (173), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 88/191 (46%), Gaps = 20/191 (10%)
Query: 8 SPLTLAACGGHV-------------NMPTDSFESPLTLAACGGHVDLALLLIERGANIEE 54
+PL +A+ GH+ N+ E+PL +AA GH ++A L++ N +
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQ---NKAK 72
Query: 55 VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVL 114
VN ++PL AA GH ++ LL+E AN G+TPL AAREGH E V L
Sbjct: 73 VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLAL 132
Query: 115 LQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNGANIELGAS---TPLMEAAQEGH 171
L+K A A G + VA+ LL+ A+ TPL A +
Sbjct: 133 LEKEAS-QACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNN 191
Query: 172 LELVRYLLDSG 182
L++V+ LL G
Sbjct: 192 LDIVKLLLPRG 202
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 89/188 (47%), Gaps = 25/188 (13%)
Query: 28 SPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERG-- 85
+PL +A ++D+ LL+ RG + P + +PL +AA V++A L++ G
Sbjct: 181 TPLHVAVHHNNLDIVKLLLPRGGSPHS---PAWNGYTPLHIAAKQNQVEVARSLLQYGGS 237
Query: 86 ANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVA 145
AN E V +G TPL AA+EGH EMV +LL K A N G + VA
Sbjct: 238 ANAESV--QGVTPLHLAAQEGHAEMVALLLSKQANGNL-GNKSGLTPLHLVAQEGHVPVA 294
Query: 146 DFLLKNGANIELGAS---TPLMEAAQEGHLELVRYLLDSGA--------------QEMQT 188
D L+K+G ++ TPL A+ G+++LV++LL A Q Q
Sbjct: 295 DVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQ 354
Query: 189 KHIDILEF 196
H DI+
Sbjct: 355 GHTDIVTL 362
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 66/127 (51%), Gaps = 8/127 (6%)
Query: 64 SPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINA 123
+PL +A+ GH+ + L++RGA+ N + TPL AAR GH E+ LLQ AK+NA
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 75
Query: 124 HXXXXXXXXXXXXCCG--GFLDVADFLLKNGANIELGAS---TPLMEAAQEGHLELVRYL 178
C G ++ LL+N AN L + TPL AA+EGH+E V L
Sbjct: 76 ---KAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLAL 132
Query: 179 LDSGAQE 185
L+ A +
Sbjct: 133 LEKEASQ 139
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 69/113 (61%), Gaps = 3/113 (2%)
Query: 11 TLAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAA 70
L A G VN S +PL LAA GH+++ +L++ GA +VN + +PL LAA
Sbjct: 32 ILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGA---DVNAVDHAGMTPLRLAA 88
Query: 71 CGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINA 123
GH+++ +L++ GA++ + EG+TPL AA GH E+V VLL+ GA +NA
Sbjct: 89 LFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNA 141
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 64/118 (54%), Gaps = 4/118 (3%)
Query: 69 AACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXX 128
AA G D +L+ GA++ + G+TPL AA GH E+V VLL+ GA +NA
Sbjct: 21 AARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNA-VDHA 79
Query: 129 XXXXXXXXCCGGFLDVADFLLKNGANI---ELGASTPLMEAAQEGHLELVRYLLDSGA 183
G L++ + LLKNGA++ ++ TPL AA GHLE+V LL +GA
Sbjct: 80 GMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGA 137
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
Query: 98 PLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNGAN--- 154
L+EAAR G ++ V +L+ GA +NA G L++ + LLKNGA+
Sbjct: 17 KLLEAARAGRDDEVRILMANGADVNAE-DASGWTPLHLAAFNGHLEIVEVLLKNGADVNA 75
Query: 155 IELGASTPLMEAAQEGHLELVRYLLDSGA 183
++ TPL AA GHLE+V LL +GA
Sbjct: 76 VDHAGMTPLRLAALFGHLEIVEVLLKNGA 104
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 16/120 (13%)
Query: 8 SPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEE 54
+PL LAA GH VN + +PL LAA GH+++ +L++ GA++
Sbjct: 49 TPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNA 108
Query: 55 VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVL 114
+M +PL LAA GH+++ +L++ GA++ + G T + G+E++ +L
Sbjct: 109 NDMEG---HTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 61/111 (54%), Gaps = 3/111 (2%)
Query: 12 LAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAAC 71
L G VN +PL AA GH ++ LLI +GA +VN +PL AA
Sbjct: 23 LIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGA---DVNAKDSDGRTPLHHAAE 79
Query: 72 GGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKIN 122
GH ++ LLI +GA++ + +G TPL AA GH+E+V +L+ KGA +N
Sbjct: 80 NGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVN 130
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 77/157 (49%), Gaps = 7/157 (4%)
Query: 30 LTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIE 89
L AA G+ D LIE GA +VN +PL AA GH ++ LLI +GA++
Sbjct: 8 LIEAAENGNKDRVKDLIENGA---DVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVN 64
Query: 90 EVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLL 149
+ +G TPL AA GH+E+V +L+ KGA +NA G +V L+
Sbjct: 65 AKDSDGRTPLHHAAENGHKEVVKLLISKGADVNA-KDSDGRTPLHHAAENGHKEVVKLLI 123
Query: 150 KNGANIELGAS---TPLMEAAQEGHLELVRYLLDSGA 183
GA++ S TPL A + G+ E+V+ L G
Sbjct: 124 SKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 59/110 (53%), Gaps = 3/110 (2%)
Query: 12 LAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAAC 71
L + G VN +PL AA GH ++ LLI +GA +VN +PL AA
Sbjct: 56 LISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGA---DVNAKDSDGRTPLHHAAE 112
Query: 72 GGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKI 121
GH ++ LLI +GA++ + +G TPL A G+EE+V +L ++G +
Sbjct: 113 NGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWL 162
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 75/152 (49%), Gaps = 34/152 (22%)
Query: 33 AACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVN 92
AA G D +LI GA +VN ++ +PL LAA GH+++ +L++ GA+++ +
Sbjct: 21 AARAGQDDEVRILIANGA---DVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAAD 77
Query: 93 DEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNG 152
G+TPL AA GH E+V VLL+ GA +NA
Sbjct: 78 VYGFTPLHLAAMTGHLEIVEVLLKYGADVNA----------------------------- 108
Query: 153 ANIELGASTPLMEAAQEGHLELVRYLLDSGAQ 184
++ STPL AA EGHLE+V LL GA
Sbjct: 109 --FDMTGSTPLHLAADEGHLEIVEVLLKYGAD 138
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 71/112 (63%), Gaps = 3/112 (2%)
Query: 12 LAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAAC 71
L A G VN ++ +PL LAA GH+++ +L++ GA+++ ++ F +PL LAA
Sbjct: 33 LIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVY--GF-TPLHLAAM 89
Query: 72 GGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINA 123
GH+++ +L++ GA++ + G TPL AA EGH E+V VLL+ GA +NA
Sbjct: 90 TGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNA 141
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 4/90 (4%)
Query: 98 PLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNGANI-- 155
L+EAAR G ++ V +L+ GA +NA G L++ + LLK+GA++
Sbjct: 17 KLLEAARAGQDDEVRILIANGADVNA-VDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDA 75
Query: 156 -ELGASTPLMEAAQEGHLELVRYLLDSGAQ 184
++ TPL AA GHLE+V LL GA
Sbjct: 76 ADVYGFTPLHLAAMTGHLEIVEVLLKYGAD 105
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 62/116 (53%), Gaps = 16/116 (13%)
Query: 8 SPLTLAACGGHVNM------------PTDSFE-SPLTLAACGGHVDLALLLIERGANIEE 54
+PL LAA GH+ + D + +PL LAA GH+++ +L++ GA++
Sbjct: 49 TPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNA 108
Query: 55 VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEM 110
+M + +PL LAA GH+++ +L++ GA++ + G T + G+E++
Sbjct: 109 FDM---TGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDL 161
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 68/112 (60%), Gaps = 3/112 (2%)
Query: 12 LAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAAC 71
L A G VN + +PL LAA GH+++ +L++ GA +VN +PL LAA
Sbjct: 33 LMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGA---DVNAKDSLGVTPLHLAAR 89
Query: 72 GGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINA 123
GH+++ +L++ GA++ + G+TPL AA+ GH E+V VLL+ GA +NA
Sbjct: 90 RGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNA 141
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 64/118 (54%), Gaps = 4/118 (3%)
Query: 69 AACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXX 128
AA G D +L+ GA++ + G+TPL AA GH E+V VLL+ GA +NA
Sbjct: 21 AARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNA-KDSL 79
Query: 129 XXXXXXXXCCGGFLDVADFLLKNGANIELGAS---TPLMEAAQEGHLELVRYLLDSGA 183
G L++ + LLKNGA++ S TPL AA+ GHLE+V LL +GA
Sbjct: 80 GVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGA 137
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 67/123 (54%), Gaps = 4/123 (3%)
Query: 33 AACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVN 92
AA G D +L+ GA +VN + +PL LAA GH+++ +L++ GA++ +
Sbjct: 21 AARAGQDDEVRILMANGA---DVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKD 77
Query: 93 DEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNG 152
G TPL AAR GH E+V VLL+ GA +NA G L++ + LLKNG
Sbjct: 78 SLGVTPLHLAARRGHLEIVEVLLKNGADVNA-SDSHGFTPLHLAAKRGHLEIVEVLLKNG 136
Query: 153 ANI 155
A++
Sbjct: 137 ADV 139
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 98 PLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNGANIEL 157
L+EAAR G ++ V +L+ GA +NA G L++ + LLKNGA++
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHF-GHLEIVEVLLKNGADVNA 75
Query: 158 GAS---TPLMEAAQEGHLELVRYLLDSGA 183
S TPL AA+ GHLE+V LL +GA
Sbjct: 76 KDSLGVTPLHLAARRGHLEIVEVLLKNGA 104
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 16/120 (13%)
Query: 8 SPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEE 54
+PL LAA GH VN +PL LAA GH+++ +L++ GA +
Sbjct: 49 TPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGA---D 105
Query: 55 VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVL 114
VN +PL LAA GH+++ +L++ GA++ + G T + G+E++ +L
Sbjct: 106 VNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 69/112 (61%), Gaps = 3/112 (2%)
Query: 12 LAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAAC 71
L A G VN S +PL LAA GH+++ +L++ GA++ +++ +PL LAA
Sbjct: 33 LMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXG---STPLHLAAL 89
Query: 72 GGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINA 123
GH+++ +L++ GA++ V+ G TPL AA GH E+V VLL+ GA +NA
Sbjct: 90 IGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNA 141
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 71/151 (47%), Gaps = 34/151 (22%)
Query: 33 AACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVN 92
AA G D +L+ GA +VN S +PL LAA GH+++ +L++ GA++ ++
Sbjct: 21 AARAGQDDEVRILMANGA---DVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID 77
Query: 93 DEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNG 152
G TPL AA GH E+V VLL+ GA +NA
Sbjct: 78 IXGSTPLHLAALIGHLEIVEVLLKHGADVNA----------------------------- 108
Query: 153 ANIELGASTPLMEAAQEGHLELVRYLLDSGA 183
++ TPL AA GHLE+V LL GA
Sbjct: 109 --VDTWGDTPLHLAAIMGHLEIVEVLLKHGA 137
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 98 PLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNGAN--- 154
L+EAAR G ++ V +L+ GA +NA G L++ + LLK+GA+
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNA-TDASGLTPLHLAATYGHLEIVEVLLKHGADVNA 75
Query: 155 IELGASTPLMEAAQEGHLELVRYLLDSGA 183
I++ STPL AA GHLE+V LL GA
Sbjct: 76 IDIXGSTPLHLAALIGHLEIVEVLLKHGA 104
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 62/120 (51%), Gaps = 16/120 (13%)
Query: 8 SPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEE 54
+PL LAA GH VN +PL LAA GH+++ +L++ GA++
Sbjct: 49 TPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNA 108
Query: 55 VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVL 114
V+ D+ PL LAA GH+++ +L++ GA++ + G T + G+E++ +L
Sbjct: 109 VDTWGDT---PLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 66/113 (58%), Gaps = 3/113 (2%)
Query: 11 TLAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAA 70
L A G VN +PL LAA GH+++ +L++ GA +VN +PL LAA
Sbjct: 32 ILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGA---DVNAYDTLGSTPLHLAA 88
Query: 71 CGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINA 123
GH+++ +L++ GA++ +D G TPL AA GH E+V VLL+ GA +NA
Sbjct: 89 HFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNA 141
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 62/118 (52%), Gaps = 4/118 (3%)
Query: 69 AACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXX 128
AA G D +L+ GA++ + G+TPL AA GH E+V VLL+ GA +NA+
Sbjct: 21 AARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLG 80
Query: 129 XXXXXXXXCCGGFLDVADFLLKNGANIEL---GASTPLMEAAQEGHLELVRYLLDSGA 183
G L++ + LLKNGA++ TPL AA GHLE+V LL GA
Sbjct: 81 STPLHLAAHF-GHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGA 137
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 50/90 (55%), Gaps = 6/90 (6%)
Query: 98 PLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNGANIE- 156
L+EAAR G ++ V +L+ GA +NA G L++ + LLKNGA++
Sbjct: 17 KLLEAARAGRDDEVRILMANGADVNA-ADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNA 75
Query: 157 ---LGASTPLMEAAQEGHLELVRYLLDSGA 183
LG STPL AA GHLE+V LL +GA
Sbjct: 76 YDTLG-STPLHLAAHFGHLEIVEVLLKNGA 104
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 66/120 (55%), Gaps = 16/120 (13%)
Query: 8 SPLTLAACGGHVNM---------PTDSFES----PLTLAACGGHVDLALLLIERGANIEE 54
+PL LAA GH+ + +++++ PL LAA GH+++ +L++ GA +
Sbjct: 49 TPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGA---D 105
Query: 55 VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVL 114
VN D+ +PL LAA GH+++ +L++ GA++ + G T + G+E++ +L
Sbjct: 106 VNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISINNGNEDLAEIL 165
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 68/112 (60%), Gaps = 3/112 (2%)
Query: 12 LAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAAC 71
L A G VN D +PL LAA GH ++ +L++ GA++ + TD + +PL LAA
Sbjct: 33 LMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARD--TDGW-TPLHLAAD 89
Query: 72 GGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINA 123
GH+++ +L++ GA++ + G TPL AA GH E+V VLL+ GA +NA
Sbjct: 90 NGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNA 141
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 69/151 (45%), Gaps = 34/151 (22%)
Query: 33 AACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVN 92
AA G D +L+ GA +VN D +PL LAA GH ++ +L++ GA++ +
Sbjct: 21 AARAGQDDEVRILMANGA---DVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARD 77
Query: 93 DEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNG 152
+G+TPL AA GH E+V VLL+ GA +NA
Sbjct: 78 TDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAY------------------------- 112
Query: 153 ANIELGASTPLMEAAQEGHLELVRYLLDSGA 183
TPL AA GHLE+V LL GA
Sbjct: 113 ------GLTPLHLAADRGHLEIVEVLLKHGA 137
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 99 LMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNGANI--- 155
L+EAAR G ++ V +L+ GA +NAH G ++ + LLK+GA++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWI-GHPEIVEVLLKHGADVNAR 76
Query: 156 ELGASTPLMEAAQEGHLELVRYLLDSGA 183
+ TPL AA GHLE+V LL GA
Sbjct: 77 DTDGWTPLHLAADNGHLEIVEVLLKYGA 104
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 61/124 (49%), Gaps = 16/124 (12%)
Query: 4 DSFESPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGA 50
D +PL LAA GH VN +PL LAA GH+++ +L++ GA
Sbjct: 45 DQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGA 104
Query: 51 NIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEM 110
+VN +PL LAA GH+++ +L++ GA++ + G T + G+E++
Sbjct: 105 ---DVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDL 161
Query: 111 VCVL 114
+L
Sbjct: 162 AEIL 165
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 69/112 (61%), Gaps = 3/112 (2%)
Query: 12 LAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAAC 71
L A G VN S +PL LAA GH+++ +L++ GA++ +++ +PL LAA
Sbjct: 33 LMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMG---STPLHLAAL 89
Query: 72 GGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINA 123
GH+++ +L++ GA++ V+ G TPL AA GH E+V VLL+ GA +NA
Sbjct: 90 IGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNA 141
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 71/151 (47%), Gaps = 34/151 (22%)
Query: 33 AACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVN 92
AA G D +L+ GA +VN S +PL LAA GH+++ +L++ GA++ ++
Sbjct: 21 AARAGQDDEVRILMANGA---DVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID 77
Query: 93 DEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNG 152
G TPL AA GH E+V VLL+ GA +NA
Sbjct: 78 IMGSTPLHLAALIGHLEIVEVLLKHGADVNA----------------------------- 108
Query: 153 ANIELGASTPLMEAAQEGHLELVRYLLDSGA 183
++ TPL AA GHLE+V LL GA
Sbjct: 109 --VDTWGDTPLHLAAIMGHLEIVEVLLKHGA 137
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 98 PLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNGAN--- 154
L+EAAR G ++ V +L+ GA +NA G L++ + LLK+GA+
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNA-TDASGLTPLHLAATYGHLEIVEVLLKHGADVNA 75
Query: 155 IELGASTPLMEAAQEGHLELVRYLLDSGA 183
I++ STPL AA GHLE+V LL GA
Sbjct: 76 IDIMGSTPLHLAALIGHLEIVEVLLKHGA 104
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 62/120 (51%), Gaps = 16/120 (13%)
Query: 8 SPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEE 54
+PL LAA GH VN +PL LAA GH+++ +L++ GA++
Sbjct: 49 TPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNA 108
Query: 55 VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVL 114
V+ D+ PL LAA GH+++ +L++ GA++ + G T + G+E++ +L
Sbjct: 109 VDTWGDT---PLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 69/114 (60%), Gaps = 5/114 (4%)
Query: 11 TLAACGGHVNMPTDSFE-SPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLA 69
L A G VN D F +PL L GH+++ +L++ A +VN S +PL LA
Sbjct: 32 ILMANGADVN-ANDWFGITPLHLVVNNGHLEIIEVLLKYAA---DVNASDKSGWTPLHLA 87
Query: 70 ACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINA 123
A GH+++ +L++ GA++ ++ +GYTPL AA +GH E+V VLL+ GA +NA
Sbjct: 88 AYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNA 141
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 59/118 (50%), Gaps = 4/118 (3%)
Query: 69 AACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXX 128
AA G D +L+ GA++ + G TPL GH E++ VLL+ A +NA
Sbjct: 21 AARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNA-SDKS 79
Query: 129 XXXXXXXXCCGGFLDVADFLLKNGANI---ELGASTPLMEAAQEGHLELVRYLLDSGA 183
G L++ + LLK GA++ + TPL AA++GHLE+V LL GA
Sbjct: 80 GWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGA 137
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 98 PLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNGANI-- 155
L+EAAR G ++ V +L+ GA +NA+ G L++ + LLK A++
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNAN-DWFGITPLHLVVNNGHLEIIEVLLKYAADVNA 75
Query: 156 -ELGASTPLMEAAQEGHLELVRYLLDSGA 183
+ TPL AA GHLE+V LL GA
Sbjct: 76 SDKSGWTPLHLAAYRGHLEIVEVLLKYGA 104
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 60/120 (50%), Gaps = 16/120 (13%)
Query: 8 SPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEE 54
+PL L GH VN S +PL LAA GH+++ +L++ GA++
Sbjct: 49 TPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNA 108
Query: 55 VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVL 114
++ +PL LAA GH+++ +L++ GA++ + G T + G+E++ +L
Sbjct: 109 MDYQG---YTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 59/93 (63%), Gaps = 3/93 (3%)
Query: 27 ESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGA 86
+PL LAA GH+++ LL+E GA +VN + +PL LAA GH+++ LL+E GA
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGA---DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 87 NIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGA 119
++ + G TPL AAR GH E+V +LL+ GA
Sbjct: 60 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 63/121 (52%), Gaps = 31/121 (25%)
Query: 63 ESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKIN 122
+PL LAA GH+++ LL+E GA++ + G TPL AAR GH E+V +LL+ GA +N
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 123 AHXXXXXXXXXXXXCCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLELVRYLLDSG 182
A KNG TPL AA+ GHLE+V+ LL++G
Sbjct: 63 AKD------------------------KNG-------RTPLHLAARNGHLEVVKLLLEAG 91
Query: 183 A 183
A
Sbjct: 92 A 92
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 49/93 (52%), Gaps = 16/93 (17%)
Query: 7 ESPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIE 53
+PL LAA GH VN + +PL LAA GH+++ LL+E GA
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA--- 59
Query: 54 EVNMPTDSFESPLTLAACGGHVDLALLLIERGA 86
+VN + +PL LAA GH+++ LL+E GA
Sbjct: 60 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 67/114 (58%), Gaps = 3/114 (2%)
Query: 11 TLAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAA 70
L A G VN D+ +PL LAA G +++ +L++ GA +VN + +PL LAA
Sbjct: 24 ILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGA---DVNASDSAGITPLHLAA 80
Query: 71 CGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAH 124
GH+++ +L++ GA++ + G+TPL AA G E+V VLL+ GA +NA
Sbjct: 81 YDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQ 134
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 68/123 (55%), Gaps = 4/123 (3%)
Query: 33 AACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVN 92
AA G D +L+ GA +VN D+ +PL LAA G +++ +L++ GA++ +
Sbjct: 13 AAAAGQDDEVRILMANGA---DVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASD 69
Query: 93 DEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNG 152
G TPL AA +GH E+V VLL+ GA +NA+ G L++ + LLK+G
Sbjct: 70 SAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQ-LEIVEVLLKHG 128
Query: 153 ANI 155
A++
Sbjct: 129 ADV 131
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 60/118 (50%), Gaps = 4/118 (3%)
Query: 69 AACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXX 128
AA G D +L+ GA++ +D G TPL AA G E+V VLL+ GA +NA
Sbjct: 13 AAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNA-SDSA 71
Query: 129 XXXXXXXXCCGGFLDVADFLLKNGANI---ELGASTPLMEAAQEGHLELVRYLLDSGA 183
G L++ + LLK+GA++ + TPL AA G LE+V LL GA
Sbjct: 72 GITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGA 129
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 99 LMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNGANIELG 158
L+EAA G ++ V +L+ GA +NA G L++ + LLKNGA++
Sbjct: 10 LLEAAAAGQDDEVRILMANGADVNA-TDDNGLTPLHLAAANGQLEIVEVLLKNGADVNAS 68
Query: 159 AS---TPLMEAAQEGHLELVRYLLDSGA 183
S TPL AA +GHLE+V LL GA
Sbjct: 69 DSAGITPLHLAAYDGHLEIVEVLLKHGA 96
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 62/124 (50%), Gaps = 16/124 (12%)
Query: 4 DSFESPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGA 50
D+ +PL LAA G VN + +PL LAA GH+++ +L++ GA
Sbjct: 37 DNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGA 96
Query: 51 NIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEM 110
+VN + +PL LAA G +++ +L++ GA++ + G T + +G E++
Sbjct: 97 ---DVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAFDISINQGQEDL 153
Query: 111 VCVL 114
+L
Sbjct: 154 AEIL 157
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 66/113 (58%), Gaps = 3/113 (2%)
Query: 11 TLAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAA 70
L A G VN +PL LAA GH+++ +L++ GA +VN +PL LAA
Sbjct: 32 ILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGA---DVNADDSLGVTPLHLAA 88
Query: 71 CGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINA 123
GH+++ +L++ GA++ + G+TPL AA GH E+V VLL+ GA +NA
Sbjct: 89 DRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNA 141
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 62/118 (52%), Gaps = 4/118 (3%)
Query: 69 AACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXX 128
AA G D +L+ GA++ + G+TPL AA GH E+V VLL+ GA +NA
Sbjct: 21 AARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNA-DDSL 79
Query: 129 XXXXXXXXCCGGFLDVADFLLKNGANI---ELGASTPLMEAAQEGHLELVRYLLDSGA 183
G L+V + LLKNGA++ + TPL AA GHLE+V LL GA
Sbjct: 80 GVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGA 137
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 49/96 (51%), Gaps = 4/96 (4%)
Query: 98 PLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNGANIEL 157
L+EAAR G ++ V +L+ GA +NA G L++ + LLKNGA++
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNA-SDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNA 75
Query: 158 GAS---TPLMEAAQEGHLELVRYLLDSGAQEMQTKH 190
S TPL AA GHLE+V LL +GA H
Sbjct: 76 DDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDH 111
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 61/120 (50%), Gaps = 16/120 (13%)
Query: 8 SPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEE 54
+PL LAA GH VN +PL LAA GH+++ +L++ GA +
Sbjct: 49 TPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGA---D 105
Query: 55 VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVL 114
VN + +PL LAA GH+++ +L++ GA++ + G T + G+E++ +L
Sbjct: 106 VNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 68/112 (60%), Gaps = 3/112 (2%)
Query: 12 LAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAAC 71
L A G VN ++PL LAA GH+++ +L++ GA++ ++ S +PL LAA
Sbjct: 33 LMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDF---SGSTPLHLAAK 89
Query: 72 GGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINA 123
GH+++ +L++ GA++ + G TPL AA GH E+V VLL+ GA +NA
Sbjct: 90 RGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNA 141
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 71/151 (47%), Gaps = 34/151 (22%)
Query: 33 AACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVN 92
AA G D +L+ GA +VN ++PL LAA GH+++ +L++ GA++ ++
Sbjct: 21 AARAGQDDEVRILMANGA---DVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALD 77
Query: 93 DEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNG 152
G TPL AA+ GH E+V VLL+ GA +NA
Sbjct: 78 FSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTI------------------------- 112
Query: 153 ANIELGASTPLMEAAQEGHLELVRYLLDSGA 183
STPL AA GHLE+V LL GA
Sbjct: 113 ------GSTPLHLAADTGHLEIVEVLLKYGA 137
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 98 PLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNGANI-- 155
L+EAAR G ++ V +L+ GA +NA G L++ + LLKNGA++
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVG-HLEIVEVLLKNGADVNA 75
Query: 156 -ELGASTPLMEAAQEGHLELVRYLLDSGA 183
+ STPL AA+ GHLE+V LL GA
Sbjct: 76 LDFSGSTPLHLAAKRGHLEIVEVLLKYGA 104
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 62/121 (51%), Gaps = 16/121 (13%)
Query: 7 ESPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIE 53
++PL LAA GH VN S +PL LAA GH+++ +L++ GA
Sbjct: 48 DTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGA--- 104
Query: 54 EVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCV 113
+VN +PL LAA GH+++ +L++ GA++ + G T + G+E++ +
Sbjct: 105 DVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEI 164
Query: 114 L 114
L
Sbjct: 165 L 165
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 65/112 (58%), Gaps = 3/112 (2%)
Query: 12 LAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAAC 71
L A G N +PL +AA GH+++ +L+ GA++ V+ + +PL LAA
Sbjct: 21 LMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDT---NGTTPLHLAAS 77
Query: 72 GGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINA 123
GH+++ +L++ GA++ + G TPL AA GH E+V VLL+ GA +NA
Sbjct: 78 LGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNA 129
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 69/151 (45%), Gaps = 34/151 (22%)
Query: 33 AACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVN 92
AA G D +L+ GA + N +PL +AA GH+++ +L+ GA++ V+
Sbjct: 9 AARAGQDDEVRILMANGA---DANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVD 65
Query: 93 DEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNG 152
G TPL AA GH E+V VLL+ GA +NA K+
Sbjct: 66 TNGTTPLHLAASLGHLEIVEVLLKYGADVNA--------------------------KDA 99
Query: 153 ANIELGASTPLMEAAQEGHLELVRYLLDSGA 183
I TPL AA GHLE+V LL GA
Sbjct: 100 TGI-----TPLYLAAYWGHLEIVEVLLKHGA 125
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Query: 99 LMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNGANI--- 155
L+EAAR G ++ V +L+ GA NA+ G L++ + LL+NGA++
Sbjct: 6 LLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVG-HLEIVEVLLRNGADVNAV 64
Query: 156 ELGASTPLMEAAQEGHLELVRYLLDSGA 183
+ +TPL AA GHLE+V LL GA
Sbjct: 65 DTNGTTPLHLAASLGHLEIVEVLLKYGA 92
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 62/121 (51%), Gaps = 16/121 (13%)
Query: 7 ESPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIE 53
+PL +AA GH VN + +PL LAA GH+++ +L++ GA
Sbjct: 36 RTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGA--- 92
Query: 54 EVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCV 113
+VN + +PL LAA GH+++ +L++ GA++ + G T + G+E++ +
Sbjct: 93 DVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDIGNEDLAEI 152
Query: 114 L 114
L
Sbjct: 153 L 153
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 69/131 (52%), Gaps = 5/131 (3%)
Query: 57 MPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQ 116
M + SPL AA GHVD+ +L++ GANI+ +++ TPLMEAA H E V L++
Sbjct: 6 MEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIK 65
Query: 117 KGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNG---ANIE-LGASTPLMEAAQEGHL 172
GA ++ G + +V +LL NG N + G TP++ A + H+
Sbjct: 66 AGALVDPKDAEGSTCLHLAAKKGHY-EVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHV 124
Query: 173 ELVRYLLDSGA 183
+LV+ LL G+
Sbjct: 125 DLVKLLLSKGS 135
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 88/197 (44%), Gaps = 23/197 (11%)
Query: 1 MPTDSFESPLTLAACGGHVNMP-------------TDSFESPLTLAACGGHVDLALLLIE 47
M + SPL AA GHV++ ++ +PL AA H++ LI+
Sbjct: 6 MEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIK 65
Query: 48 RGANIEEVNMPTDSFESP-LTLAACGGHVDLALLLIERG-ANIEEVNDEGYTPLMEAARE 105
GA ++ P D+ S L LAA GH ++ L+ G ++ +D G+TP++ A
Sbjct: 66 AGALVD----PKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEY 121
Query: 106 GHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNGAN---IELGASTP 162
H ++V +LL KG+ IN G +D+A+ LL + + + +P
Sbjct: 122 KHVDLVKLLLSKGSDINIRDNEENICLHWAA-FSGCVDIAEILLAAKCDLHAVNIHGDSP 180
Query: 163 LMEAAQEGHLELVRYLL 179
L AA+E + V L
Sbjct: 181 LHIAARENRYDCVVLFL 197
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 3/103 (2%)
Query: 19 VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLA 78
VN D +P+ A HVDL LL+ +G++I N+ + L AA G VD+A
Sbjct: 104 VNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDI---NIRDNEENICLHWAAFSGCVDIA 160
Query: 79 LLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKI 121
+L+ ++ VN G +PL AARE + V + L + + +
Sbjct: 161 EILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDV 203
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 16 GGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHV 75
G +N+ + L AA G VD+A +L+ ++ VN+ DS PL +AA
Sbjct: 134 GSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDS---PLHIAARENRY 190
Query: 76 DLALLLIERGANIEEVNDEGYTPL 99
D +L + R +++ N EG TPL
Sbjct: 191 DCVVLFLSRDSDVTLKNKEGETPL 214
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 62/111 (55%), Gaps = 3/111 (2%)
Query: 12 LAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAAC 71
L G VN ++PL LAA GH ++ LL+ +GA + N ++PL LAA
Sbjct: 23 LLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGA---DPNAKDSDGKTPLHLAAE 79
Query: 72 GGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKIN 122
GH ++ LL+ +GA+ + +G TPL AA GH+E+V +LL +GA N
Sbjct: 80 NGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPN 130
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 70/154 (45%), Gaps = 34/154 (22%)
Query: 30 LTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIE 89
L AA G+ D L+E GA +VN ++PL LAA GH ++ LL+ +GA+
Sbjct: 8 LIEAAENGNKDRVKDLLENGA---DVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPN 64
Query: 90 EVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLL 149
+ +G TPL AA GH+E+V +LL +GA NA
Sbjct: 65 AKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSD---------------------- 102
Query: 150 KNGANIELGASTPLMEAAQEGHLELVRYLLDSGA 183
TPL AA+ GH E+V+ LL GA
Sbjct: 103 ---------GKTPLHLAAENGHKEVVKLLLSQGA 127
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 66/128 (51%), Gaps = 16/128 (12%)
Query: 7 ESPLTLAACGGHV-------------NMPTDSFESPLTLAACGGHVDLALLLIERGANIE 53
++PL LAA GH N ++PL LAA GH ++ LL+ +GA
Sbjct: 38 KTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGA--- 94
Query: 54 EVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCV 113
+ N ++PL LAA GH ++ LL+ +GA+ + +G TPL A G+EE+V +
Sbjct: 95 DPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKL 154
Query: 114 LLQKGAKI 121
L ++G +
Sbjct: 155 LEKQGGWL 162
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 80/170 (47%), Gaps = 7/170 (4%)
Query: 16 GGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHV 75
G VN+ T SPL A GGH+ +L++ GA +VN T + +PL A G
Sbjct: 26 GWAVNIITADHVSPLHEACLGGHLSCVKILLKHGA---QVNGVTADWHTPLFNACVSGSW 82
Query: 76 DLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXX 135
D LL++ GA+++ +D +P+ EAAR GH E V L+ G I+ H
Sbjct: 83 DCVNLLLQHGASVQPESDLA-SPIHEAARRGHVECVNSLIAYGGNID-HKISHLGTPLYL 140
Query: 136 XCCGGFLDVADFLLKNGANIELGAS--TPLMEAAQEGHLELVRYLLDSGA 183
C LL++GA++ G +PL A+ EL L+D GA
Sbjct: 141 ACENQQRACVKKLLESGADVNQGKGQDSPLHAVARTASEELACLLMDFGA 190
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 73/165 (44%), Gaps = 8/165 (4%)
Query: 28 SPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGAN 87
SP+ AA GH LI +G VN+ T SPL A GGH+ +L++ GA
Sbjct: 5 SPMHEAAIHGHQLSLRNLISQGW---AVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ 61
Query: 88 IEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADF 147
+ V + +TPL A G + V +LLQ GA + G ++ +
Sbjct: 62 VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAAR--RGHVECVNS 119
Query: 148 LLKNGANIELGAS---TPLMEAAQEGHLELVRYLLDSGAQEMQTK 189
L+ G NI+ S TPL A + V+ LL+SGA Q K
Sbjct: 120 LIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGK 164
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 39/91 (42%), Gaps = 4/91 (4%)
Query: 96 YTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNGANI 155
++P+ EAA GH+ + L+ +G +N C GG L LLK+GA +
Sbjct: 4 WSPMHEAAIHGHQLSLRNLISQGWAVNI-ITADHVSPLHEACLGGHLSCVKILLKHGAQV 62
Query: 156 E---LGASTPLMEAAQEGHLELVRYLLDSGA 183
TPL A G + V LL GA
Sbjct: 63 NGVTADWHTPLFNACVSGSWDCVNLLLQHGA 93
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 11 TLAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAA 70
+L A GG+++ +PL LA L+E GA++ + +SPL A
Sbjct: 119 SLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ----GKGQDSPLHAVA 174
Query: 71 CGGHVDLALLLIERGANIEEVNDEGYTPL 99
+LA LL++ GA+ + N EG P+
Sbjct: 175 RTASEELACLLMDFGADTQAKNAEGKRPV 203
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 59/107 (55%), Gaps = 4/107 (3%)
Query: 17 GHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVD 76
GH+ D +PL AA GH + L+ +GA +VN + +PL LAA GH +
Sbjct: 1 GHMWGSKDG-NTPLHNAAKNGHAEEVKKLLSKGA---DVNARSKDGNTPLHLAAKNGHAE 56
Query: 77 LALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINA 123
+ LL+ +GA++ + +G TP A + GH E+V +L KGA +NA
Sbjct: 57 IVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNA 103
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 43/93 (46%), Gaps = 4/93 (4%)
Query: 94 EGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNGA 153
+G TPL AA+ GH E V LL KGA +NA G ++ LL GA
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNA-RSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 154 NIEL---GASTPLMEAAQEGHLELVRYLLDSGA 183
++ +TP A + GH E+V+ L GA
Sbjct: 67 DVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGA 99
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 12 LAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAAC 71
L + G VN + +PL LAA GH ++ LL+ +GA +VN + +P LA
Sbjct: 28 LLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA---DVNARSKDGNTPEHLAKK 84
Query: 72 GGHVDLALLLIERGANI 88
GH ++ LL +GA++
Sbjct: 85 NGHHEIVKLLDAKGADV 101
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 81/175 (46%), Gaps = 7/175 (4%)
Query: 11 TLAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAA 70
L + G VN+ T SPL A GGH+ +L++ GA +VN T + +PL A
Sbjct: 77 NLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGA---QVNGVTADWHTPLFNAC 133
Query: 71 CGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXX 130
G D LL++ GA+++ +D +P+ EAAR GH E V L+ G I+ H
Sbjct: 134 VSGSWDCVNLLLQHGASVQPESDLA-SPIHEAARRGHVECVNSLIAYGGNID-HKISHLG 191
Query: 131 XXXXXXCCGGFLDVADFLLKNGANIELGAS--TPLMEAAQEGHLELVRYLLDSGA 183
C LL++GA++ G +PL + EL L+D GA
Sbjct: 192 TPLYLACENQQRACVKKLLESGADVNQGKGQDSPLHAVVRTASEELACLLMDFGA 246
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 75/171 (43%), Gaps = 8/171 (4%)
Query: 25 SFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIER 84
S SP+ AA GH LI +G VN+ T SPL A GGH+ +L++
Sbjct: 58 SDWSPMHEAAIHGHQLSLRNLISQG---WAVNIITADHVSPLHEACLGGHLSCVKILLKH 114
Query: 85 GANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDV 144
GA + V + +TPL A G + V +LLQ GA + G ++
Sbjct: 115 GAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAAR--RGHVEC 172
Query: 145 ADFLLKNGANIELGAS---TPLMEAAQEGHLELVRYLLDSGAQEMQTKHID 192
+ L+ G NI+ S TPL A + V+ LL+SGA Q K D
Sbjct: 173 VNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQD 223
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Query: 11 TLAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAA 70
+L A GG+++ +PL LA L+E GA++ + +SPL
Sbjct: 175 SLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ----GKGQDSPLHAVV 230
Query: 71 CGGHVDLALLLIERGANIEEVNDEGYTPL 99
+LA LL++ GA+ + N EG P+
Sbjct: 231 RTASEELACLLMDFGADTQAKNAEGKRPV 259
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 57/111 (51%), Gaps = 3/111 (2%)
Query: 12 LAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAAC 71
L G N +PL AA GH ++ LL+ +GA + N +PL AA
Sbjct: 23 LLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGA---DPNAKDSDGRTPLHYAAE 79
Query: 72 GGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKIN 122
GH ++ LL+ +GA+ + +G TPL AA GH+E+V +LL KGA N
Sbjct: 80 NGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPN 130
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 67/154 (43%), Gaps = 34/154 (22%)
Query: 30 LTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIE 89
L AA G+ D L+E GA + N +PL AA GH ++ LL+ +GA+
Sbjct: 8 LIEAAENGNKDRVKDLLENGA---DPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPN 64
Query: 90 EVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLL 149
+ +G TPL AA GH+E+V +LL KGA NA
Sbjct: 65 AKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSD---------------------- 102
Query: 150 KNGANIELGASTPLMEAAQEGHLELVRYLLDSGA 183
TPL AA+ GH E+V+ LL GA
Sbjct: 103 ---------GRTPLHYAAENGHKEIVKLLLSKGA 127
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 60/127 (47%), Gaps = 16/127 (12%)
Query: 8 SPLTLAACGGHV-------------NMPTDSFESPLTLAACGGHVDLALLLIERGANIEE 54
+PL AA GH N +PL AA GH ++ LL+ +GA +
Sbjct: 39 TPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGA---D 95
Query: 55 VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVL 114
N +PL AA GH ++ LL+ +GA+ + +G TPL A G+EE+V +L
Sbjct: 96 PNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLL 155
Query: 115 LQKGAKI 121
++G +
Sbjct: 156 EKQGGWL 162
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 56/110 (50%), Gaps = 3/110 (2%)
Query: 14 ACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGG 73
A G VN+ + SPL +AA G DL LL++ GAN N PL LA G
Sbjct: 74 ASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQ---AVPLHLACQQG 130
Query: 74 HVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINA 123
H + L++ A + + G TPL+ A GH E+V +LLQ GA INA
Sbjct: 131 HFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINA 180
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 64/132 (48%), Gaps = 4/132 (3%)
Query: 55 VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVL 114
VN+ + SPL +AA G DL LL++ GAN N + PL A ++GH ++V L
Sbjct: 79 VNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCL 138
Query: 115 LQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNGANIELG---ASTPLMEAAQEGH 171
L AK N C GG ++ LL++GA+I +T L EA E H
Sbjct: 139 LDSNAKPNK-KDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKH 197
Query: 172 LELVRYLLDSGA 183
+ +V LL GA
Sbjct: 198 VFVVELLLLHGA 209
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 45/104 (43%), Gaps = 16/104 (15%)
Query: 9 PLTLAACGGHV-------------NMPTDSFESPLTLAACGGHVDLALLLIERGANIEEV 55
PL LA GH N S +PL A GGH +L LL++ GA+I
Sbjct: 122 PLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASI--- 178
Query: 56 NMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPL 99
N + + L A HV + LL+ GA+++ +N T +
Sbjct: 179 NASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAV 222
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 140 GFLDVADFLLKNGANI---ELGASTPLMEAAQEGHLELVRYLLDSGAQ 184
G D+ LLK+GAN + PL A Q+GH ++V+ LLDS A+
Sbjct: 97 GRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAK 144
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
Query: 19 VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLA 78
VN P + +PL A+ G ++ L+E GA+ ++ ES L+LA+ GG+ D+
Sbjct: 29 VNKPDERGFTPLIWASAFGEIETVRFLLEWGAD---PHILAKERESALSLASTGGYTDIV 85
Query: 79 LLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKI 121
LL+ER +I + G TPL+ A R H + V LL +GA +
Sbjct: 86 GLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADL 128
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 3/88 (3%)
Query: 27 ESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGA 86
ES L+LA+ GG+ D+ LL+ER +I N+ + +PL A G HV L+ RGA
Sbjct: 70 ESALSLASTGGYTDIVGLLLERDVDI---NIYDWNGGTPLLYAVRGNHVKCVEALLARGA 126
Query: 87 NIEEVNDEGYTPLMEAAREGHEEMVCVL 114
++ D GYTP+ A G+ ++ V+
Sbjct: 127 DLTTEADSGYTPMDLAVALGYRKVQQVI 154
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 57/138 (41%), Gaps = 33/138 (23%)
Query: 46 IERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAARE 105
+ +G N+ VN P + +PL A+ G ++ L+E GA+ + E + L A+
Sbjct: 22 LRKGDNL--VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTG 79
Query: 106 GHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNGANIELGASTPLME 165
G+ ++V +LL++ IN + + TPL+
Sbjct: 80 GYTDIVGLLLERDVDINIY-------------------------------DWNGGTPLLY 108
Query: 166 AAQEGHLELVRYLLDSGA 183
A + H++ V LL GA
Sbjct: 109 AVRGNHVKCVEALLARGA 126
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 72/155 (46%), Gaps = 28/155 (18%)
Query: 28 SPLTLAACGGHVDLALLLIERGAN--IEEVNMPTDSFESPLTLAACGGHVDLALLLIERG 85
+PL A D+ LL+ GA+ + + N T P LAA G V L L + +G
Sbjct: 61 TPLHNAVQMSREDIVELLLRHGADPVLRKKNGAT-----PFILAAIAGSVKLLKLFLSKG 115
Query: 86 ANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVA 145
A++ E + G+T MEAA G + + L ++GA +N
Sbjct: 116 ADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTK----------------- 158
Query: 146 DFLLKNGANIELGASTPLMEAAQEGHLELVRYLLD 180
++ + G +T LM+AA++GH+E+++ LLD
Sbjct: 159 ----EDQERLRKGGATALMDAAEKGHVEVLKILLD 189
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 85/183 (46%), Gaps = 27/183 (14%)
Query: 28 SPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGAN 87
+P LAA G V L L + +GA++ E + F + + AA G V L +RGAN
Sbjct: 94 TPFILAAIAGSVKLLKLFLSKGADVNECDFY--GFTAFME-AAVYGKVKALKFLYKRGAN 150
Query: 88 I----------EEVNDEGYTPLMEAAREGHEEMVCVLL-QKGAKINAHXXXXXXXXXXXX 136
+ E + G T LM+AA +GH E++ +LL + GA +NA
Sbjct: 151 VNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHAL 210
Query: 137 CCGGFLDV---ADFLLKNGANIEL---GASTPLMEAAQEGHLELVRYLLDSGAQEMQTKH 190
DV LL +GA++ + TPL+ A ++ HL LV+ LL + +H
Sbjct: 211 LSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLL-------EQEH 263
Query: 191 IDI 193
I+I
Sbjct: 264 IEI 266
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 53/109 (48%), Gaps = 7/109 (6%)
Query: 16 GGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHV 75
G VN+ + ++PL LA H+ L L+E+ +I E+N ++ L LA
Sbjct: 229 GADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ-EHI-EINDTDSDGKTALLLAVELKLK 286
Query: 76 DLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAH 124
+A LL +RGA+ D G +M A R +V VLL GAK + H
Sbjct: 287 KIAELLCKRGAS----TDCG-DLVMTARRNYDHSLVKVLLSHGAKEDFH 330
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 72/155 (46%), Gaps = 28/155 (18%)
Query: 28 SPLTLAACGGHVDLALLLIERGAN--IEEVNMPTDSFESPLTLAACGGHVDLALLLIERG 85
+PL A D+ LL+ GA+ + + N T P LAA G V L L + +G
Sbjct: 41 TPLHNAVQMSREDIVELLLRHGADPVLRKKNGAT-----PFLLAAIAGSVKLLKLFLSKG 95
Query: 86 ANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVA 145
A++ E + G+T MEAA G + + L ++GA +N
Sbjct: 96 ADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTK----------------- 138
Query: 146 DFLLKNGANIELGASTPLMEAAQEGHLELVRYLLD 180
++ + G +T LM+AA++GH+E+++ LLD
Sbjct: 139 ----EDQERLRKGGATALMDAAEKGHVEVLKILLD 169
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 85/183 (46%), Gaps = 27/183 (14%)
Query: 28 SPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGAN 87
+P LAA G V L L + +GA++ E + F + + AA G V L +RGAN
Sbjct: 74 TPFLLAAIAGSVKLLKLFLSKGADVNECDFY--GFTAFME-AAVYGKVKALKFLYKRGAN 130
Query: 88 I----------EEVNDEGYTPLMEAAREGHEEMVCVLL-QKGAKINAHXXXXXXXXXXXX 136
+ E + G T LM+AA +GH E++ +LL + GA +NA
Sbjct: 131 VNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHAL 190
Query: 137 CCGGFLDV---ADFLLKNGANIEL---GASTPLMEAAQEGHLELVRYLLDSGAQEMQTKH 190
DV LL +GA++ + TPL+ A ++ HL LV+ LL + +H
Sbjct: 191 LSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLL-------EQEH 243
Query: 191 IDI 193
I+I
Sbjct: 244 IEI 246
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 55/97 (56%), Gaps = 3/97 (3%)
Query: 28 SPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGAN 87
+ L A + +A L+ +G+N VN S ++PL + G+ +++ L+E GAN
Sbjct: 70 TALIWAVKNNRLGIAEKLLSKGSN---VNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGAN 126
Query: 88 IEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAH 124
+ + N EG TPL+ A++ G E+V LL+ GA I+A
Sbjct: 127 VNDRNLEGETPLIVASKYGRSEIVKKLLELGADISAR 163
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 68/137 (49%), Gaps = 5/137 (3%)
Query: 51 NIEEVNMPTDSF-ESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEE 109
N++ + DS+ +PL +A G + L+E +E+ + EG T L+ A +
Sbjct: 23 NLDFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLG 82
Query: 110 MVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNGANI---ELGASTPLMEA 166
+ LL KG+ +N G+ +++ FLL++GAN+ L TPL+ A
Sbjct: 83 IAEKLLSKGSNVNTKDFSGKTPLMWSIIF-GYSEMSYFLLEHGANVNDRNLEGETPLIVA 141
Query: 167 AQEGHLELVRYLLDSGA 183
++ G E+V+ LL+ GA
Sbjct: 142 SKYGRSEIVKKLLELGA 158
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 12 LAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAAC 71
L + G +VN S ++PL + G+ +++ L+E GAN+ + N+ E+PL +A+
Sbjct: 87 LLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEG---ETPLIVASK 143
Query: 72 GGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVL 114
G ++ L+E GA+I + G T A G +E++ +
Sbjct: 144 YGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIF 186
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 47/75 (62%)
Query: 50 ANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEE 109
AN +VN D+ +PL LAA GH+++ +L++ GA++ + G TPL AA GH E
Sbjct: 35 ANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLE 94
Query: 110 MVCVLLQKGAKINAH 124
+V VLL+ GA +NA
Sbjct: 95 IVEVLLEYGADVNAQ 109
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 60/104 (57%), Gaps = 5/104 (4%)
Query: 12 LAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSF-ESPLTLAA 70
L A G VN D+ +PL LAA GH+++ +L++ GA++ +DS+ +PL LAA
Sbjct: 33 LMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN----ASDSWGRTPLHLAA 88
Query: 71 CGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVL 114
GH+++ +L+E GA++ + G T + G+E++ +L
Sbjct: 89 TVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Query: 98 PLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNGANIEL 157
L+EA R G ++ V +L+ GA +NA G L++ + LLK+GA++
Sbjct: 17 KLLEATRAGQDDEVRILMANGADVNA-MDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNA 75
Query: 158 GAS---TPLMEAAQEGHLELVRYLLDSGA 183
S TPL AA GHLE+V LL+ GA
Sbjct: 76 SDSWGRTPLHLAATVGHLEIVEVLLEYGA 104
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 55/103 (53%), Gaps = 3/103 (2%)
Query: 19 VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLA 78
VN P + +PL A+ G ++ L+E GA+ ++ ES L+LA+ GG+ D+
Sbjct: 29 VNKPDERGFTPLIWASAFGEIETVRFLLEWGAD---PHILAKERESALSLASTGGYTDIV 85
Query: 79 LLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKI 121
LL+ER +I + G TPL+ A H + V LL +GA +
Sbjct: 86 GLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADL 128
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 3/88 (3%)
Query: 27 ESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGA 86
ES L+LA+ GG+ D+ LL+ER +I N+ + +PL A G HV L+ RGA
Sbjct: 70 ESALSLASTGGYTDIVGLLLERDVDI---NIYDWNGGTPLLYAVHGNHVKCVEALLARGA 126
Query: 87 NIEEVNDEGYTPLMEAAREGHEEMVCVL 114
++ D GYTP+ A G+ ++ V+
Sbjct: 127 DLTTEADSGYTPMDLAVALGYRKVQQVI 154
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 46 IERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAARE 105
+ +G N+ VN P + +PL A+ G ++ L+E GA+ + E + L A+
Sbjct: 22 LRKGDNL--VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTG 79
Query: 106 GHEEMVCVLLQKGAKINAH 124
G+ ++V +LL++ IN +
Sbjct: 80 GYTDIVGLLLERDVDINIY 98
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 47/75 (62%)
Query: 50 ANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEE 109
AN +VN D+ +PL LAA GH+++ +L++ GA++ + G TPL AA GH E
Sbjct: 35 ANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLE 94
Query: 110 MVCVLLQKGAKINAH 124
+V VLL+ GA +NA
Sbjct: 95 IVEVLLEYGADVNAQ 109
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 57/103 (55%), Gaps = 3/103 (2%)
Query: 12 LAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAAC 71
L A G VN D+ +PL LAA GH+++ +L++ GA +VN +PL LAA
Sbjct: 33 LMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA---DVNASDIWGRTPLHLAAT 89
Query: 72 GGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVL 114
GH+++ +L+E GA++ + G T + G+E++ +L
Sbjct: 90 VGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
Query: 98 PLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNGANI-- 155
L+EA R G ++ V +L+ GA +NA G L++ + LLK+GA++
Sbjct: 17 KLLEATRAGQDDEVRILMANGADVNA-MDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNA 75
Query: 156 -ELGASTPLMEAAQEGHLELVRYLLDSGA 183
++ TPL AA GHLE+V LL+ GA
Sbjct: 76 SDIWGRTPLHLAATVGHLEIVEVLLEYGA 104
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 47/75 (62%)
Query: 50 ANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEE 109
AN +VN D+ +PL LAA GH+++ +L++ GA++ + G TPL AA GH E
Sbjct: 35 ANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLE 94
Query: 110 MVCVLLQKGAKINAH 124
+V VLL+ GA +NA
Sbjct: 95 IVEVLLEYGADVNAQ 109
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 57/103 (55%), Gaps = 3/103 (2%)
Query: 12 LAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAAC 71
L A G VN D+ +PL LAA GH+++ +L++ GA +VN +PL LAA
Sbjct: 33 LMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA---DVNARDIWGRTPLHLAAT 89
Query: 72 GGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVL 114
GH+++ +L+E GA++ + G T + G+E++ +L
Sbjct: 90 VGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
Query: 98 PLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNGANI-- 155
L+EA R G ++ V +L+ GA +NA G L++ + LLK+GA++
Sbjct: 17 KLLEATRAGQDDEVRILMANGADVNA-MDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNA 75
Query: 156 -ELGASTPLMEAAQEGHLELVRYLLDSGA 183
++ TPL AA GHLE+V LL+ GA
Sbjct: 76 RDIWGRTPLHLAATVGHLEIVEVLLEYGA 104
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 71/158 (44%), Gaps = 5/158 (3%)
Query: 28 SPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGAN 87
+ L A GH ++ L++ G VN D+ SPL +AA G ++ L+ +GA+
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGV---PVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAH 98
Query: 88 IEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADF 147
+ VN G TPL AA + E+ +LL+ GA +A G V
Sbjct: 99 VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHIL 158
Query: 148 LL-KNGANIE-LGASTPLMEAAQEGHLELVRYLLDSGA 183
L K NI+ +TPL A E +E ++L+ GA
Sbjct: 159 LFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGA 196
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 68/139 (48%), Gaps = 4/139 (2%)
Query: 19 VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLA 78
VN D+ SPL +AA G ++ L+ +GA++ VN + +PL AA ++A
Sbjct: 66 VNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVN---QNGCTPLHYAASKNRHEIA 122
Query: 79 LLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCC 138
++L+E GAN + + T + AA +G+ +MV +LL A N C
Sbjct: 123 VMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQ-DTEGNTPLHLACD 181
Query: 139 GGFLDVADFLLKNGANIEL 157
++ A FL+ GA+I +
Sbjct: 182 EERVEEAKFLVTQGASIYI 200
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 38/99 (38%), Gaps = 4/99 (4%)
Query: 97 TPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNGANIE 156
T L A GH E+V LLQ G +N G ++ LL GA++
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVN-DKDDAGWSPLHIAASAGRDEIVKALLVKGAHVN 100
Query: 157 L---GASTPLMEAAQEGHLELVRYLLDSGAQEMQTKHID 192
TPL AA + E+ LL+ GA H D
Sbjct: 101 AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYD 139
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 53/91 (58%), Gaps = 3/91 (3%)
Query: 33 AACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVN 92
AA G D +L+ GA +VN + +PL LA GH+++ +L++ GA++ V+
Sbjct: 21 AARAGQDDEVRILMANGA---DVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVD 77
Query: 93 DEGYTPLMEAAREGHEEMVCVLLQKGAKINA 123
G+TPL AA GH E+ VLL+ GA +NA
Sbjct: 78 AIGFTPLHLAAFIGHLEIAEVLLKHGADVNA 108
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 58/104 (55%), Gaps = 3/104 (2%)
Query: 11 TLAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAA 70
L A G VN + +PL LA GH+++ +L++ GA++ V+ F +PL LAA
Sbjct: 32 ILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAI--GF-TPLHLAA 88
Query: 71 CGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVL 114
GH+++A +L++ GA++ + G T + G+E++ +L
Sbjct: 89 FIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 98 PLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNGAN--- 154
L+EAAR G ++ V +L+ GA +NA G L++ + LLKNGA+
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNA-KDEYGLTPLYLATAHGHLEIVEVLLKNGADVNA 75
Query: 155 IELGASTPLMEAAQEGHLELVRYLLDSGA 183
++ TPL AA GHLE+ LL GA
Sbjct: 76 VDAIGFTPLHLAAFIGHLEIAEVLLKHGA 104
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 69 AACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXX 128
AA G D +L+ GA++ ++ G TPL A GH E+V VLL+ GA +NA
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIG 80
Query: 129 XXXXXXXXCCGGFLDVADFLLKNGANI 155
G L++A+ LLK+GA++
Sbjct: 81 FTPLHLAAFIG-HLEIAEVLLKHGADV 106
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 71/158 (44%), Gaps = 5/158 (3%)
Query: 28 SPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGAN 87
+ L A GH ++ L++ G VN D+ SPL +AA G ++ L+ +GA+
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGV---PVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAH 98
Query: 88 IEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADF 147
+ VN G TPL AA + E+ +LL+ GA +A G V
Sbjct: 99 VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHIL 158
Query: 148 LL-KNGANIE-LGASTPLMEAAQEGHLELVRYLLDSGA 183
L K NI+ +TPL A E +E ++L+ GA
Sbjct: 159 LFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGA 196
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 68/139 (48%), Gaps = 4/139 (2%)
Query: 19 VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLA 78
VN D+ SPL +AA G ++ L+ +GA++ VN + +PL AA ++A
Sbjct: 66 VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVN---QNGCTPLHYAASKNRHEIA 122
Query: 79 LLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCC 138
++L+E GAN + + T + AA +G+ +MV +LL A N C
Sbjct: 123 VMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQ-DTEGNTPLHLACD 181
Query: 139 GGFLDVADFLLKNGANIEL 157
++ A FL+ GA+I +
Sbjct: 182 EERVEEAKFLVTQGASIYI 200
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 38/99 (38%), Gaps = 4/99 (4%)
Query: 97 TPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNGANIE 156
T L A GH E+V LLQ G +N G ++ LL GA++
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVN-DKDDAGWSPLHIAASAGXDEIVKALLVKGAHVN 100
Query: 157 L---GASTPLMEAAQEGHLELVRYLLDSGAQEMQTKHID 192
TPL AA + E+ LL+ GA H D
Sbjct: 101 AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYD 139
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 33 AACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVN 92
AA G D +L+ GA +VN + +PL LAA GH+++ +L++ GA++ +
Sbjct: 21 AARAGQDDEVRILMANGA---DVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAED 77
Query: 93 DEGYTPLMEAAREGHEEMVCVLLQKGAKINAH 124
+ G TPL AA GH E+V VLL+ GA +NA
Sbjct: 78 NFGITPLHLAAIRGHLEIVEVLLKHGADVNAQ 109
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 69 AACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXX 128
AA G D +L+ GA++ ++++G TPL AA+ GH E+V VLL+ GA +NA
Sbjct: 21 AARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFG 80
Query: 129 XXXXXXXXCCGGFLDVADFLLKNGANI 155
G L++ + LLK+GA++
Sbjct: 81 ITPLHLA-AIRGHLEIVEVLLKHGADV 106
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 57/104 (54%), Gaps = 3/104 (2%)
Query: 11 TLAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAA 70
L A G VN + +PL LAA GH+++ +L++ GA +VN + +PL LAA
Sbjct: 32 ILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGA---DVNAEDNFGITPLHLAA 88
Query: 71 CGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVL 114
GH+++ +L++ GA++ + G T + G+E++ +L
Sbjct: 89 IRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 98 PLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNGANIEL 157
L+EAAR G ++ V +L+ GA +NA G L++ + LLK GA++
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQL-GHLEIVEVLLKYGADVNA 75
Query: 158 GAS---TPLMEAAQEGHLELVRYLLDSGA 183
+ TPL AA GHLE+V LL GA
Sbjct: 76 EDNFGITPLHLAAIRGHLEIVEVLLKHGA 104
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 81/204 (39%), Gaps = 32/204 (15%)
Query: 7 ESPLTLAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPL 66
E L L G +N + L A +VD+ L+E GANI N P + PL
Sbjct: 54 EEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANI---NQPDNEGWIPL 110
Query: 67 TLAACGGHVDLALLLIERGANIEEVNDEGYTPL----------------------MEAAR 104
AA G++D+A LI +GA++ VN EG TPL +EAAR
Sbjct: 111 HAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAAR 170
Query: 105 EGHEEMVCV----LLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNGANIEL--- 157
+ E ++ L G + G+ +V L++ ++ +
Sbjct: 171 KEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDY 230
Query: 158 GASTPLMEAAQEGHLELVRYLLDS 181
TPL AA G E R L+++
Sbjct: 231 DGWTPLHAAAHWGKEEACRILVEN 254
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 55/98 (56%), Gaps = 4/98 (4%)
Query: 27 ESPLTLAACG-GHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERG 85
+ + LAAC G + L L+ERGA+I N+ D + L A +VD+ L+E G
Sbjct: 40 DGAVFLAACSSGDTEEVLRLLERGADINYANV--DGL-TALHQACIDDNVDMVKFLVENG 96
Query: 86 ANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINA 123
ANI + ++EG+ PL AA G+ ++ L+ +GA + A
Sbjct: 97 ANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGA 134
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 52/126 (41%), Gaps = 38/126 (30%)
Query: 63 ESPLTLAACG-GHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKI 121
+ + LAAC G + L L+ERGA+I N +G T L +A
Sbjct: 40 DGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQA------------------- 80
Query: 122 NAHXXXXXXXXXXXXCCGGFLDVADFLLKNGANI---ELGASTPLMEAAQEGHLELVRYL 178
C +D+ FL++NGANI + PL AA G+L++ YL
Sbjct: 81 ---------------CIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYL 125
Query: 179 LDSGAQ 184
+ GA
Sbjct: 126 ISQGAH 131
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 17 GHVN--MPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGH 74
GH+N S + L +AA G+ ++ LLI+ +VN+ +PL AA G
Sbjct: 188 GHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARY---DVNIKDYDGWTPLHAAAHWGK 244
Query: 75 VDLALLLIERGANIEEVNDEGYTPL 99
+ +L+E ++E VN G T
Sbjct: 245 EEACRILVENLCDMEAVNKVGQTAF 269
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 53/91 (58%), Gaps = 3/91 (3%)
Query: 33 AACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVN 92
AA G D +L+ GA +VN +PL LAA H+++ +L++ GA++ +
Sbjct: 21 AARAGQDDEVRILMANGA---DVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHD 77
Query: 93 DEGYTPLMEAAREGHEEMVCVLLQKGAKINA 123
++G TPL AA GH E+V VLL+ GA +NA
Sbjct: 78 NDGSTPLHLAALFGHLEIVEVLLKHGADVNA 108
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 49/115 (42%), Gaps = 31/115 (26%)
Query: 69 AACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXX 128
AA G D +L+ GA++ + +G TPL AA H E+V VLL+ GA +NAH
Sbjct: 21 AARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDND- 79
Query: 129 XXXXXXXXCCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLELVRYLLDSGA 183
STPL AA GHLE+V LL GA
Sbjct: 80 ------------------------------GSTPLHLAALFGHLEIVEVLLKHGA 104
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 55/104 (52%), Gaps = 3/104 (2%)
Query: 11 TLAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAA 70
L A G VN +PL LAA H+++ +L++ GA +VN + +PL LAA
Sbjct: 32 ILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGA---DVNAHDNDGSTPLHLAA 88
Query: 71 CGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVL 114
GH+++ +L++ GA++ + G T + G+E++ +L
Sbjct: 89 LFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 4 DSFESPLTLAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSF- 62
D E L G VN + +PL LAA GH+++ +L++ GA++ D F
Sbjct: 58 DHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVN----AQDKFG 113
Query: 63 ESPLTLAACGGHVDLALLL 81
++ ++ G+ DLA +L
Sbjct: 114 KTAFDISIDNGNEDLAEIL 132
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 50/105 (47%), Gaps = 4/105 (3%)
Query: 82 IERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGF 141
IE+ I ++EG+TPLM AA G +V LLQ GA C G+
Sbjct: 21 IEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQL-LGKGRESALSLACSKGY 79
Query: 142 LDVADFLLKNGANI---ELGASTPLMEAAQEGHLELVRYLLDSGA 183
D+ LL G ++ + TPL+ A H++ V+ LL+SGA
Sbjct: 80 TDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA 124
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 27 ESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGA 86
ES L+LA G+ D+ +L++ G ++ E + + PL A G HV +L+E GA
Sbjct: 68 ESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGT---PLLYAVHGNHVKCVKMLLESGA 124
Query: 87 NIEEVNDEGYTPLMEAAREGHEEMVCVL 114
+ D GY + A G+ + V+
Sbjct: 125 DPTIETDSGYNSMDLAVALGYRSVQQVI 152
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 57/119 (47%), Gaps = 5/119 (4%)
Query: 68 LAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXX 127
LAA G + LA IE+ I ++EG+TPLM AA G +V LLQ GA
Sbjct: 26 LAAQGEMLYLATR-IEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQL-LGK 83
Query: 128 XXXXXXXXXCCGGFLDVADFLLKNGANI---ELGASTPLMEAAQEGHLELVRYLLDSGA 183
C G+ D+ LL G ++ + TPL+ A H++ V+ LL+SGA
Sbjct: 84 GRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA 142
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 27 ESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGA 86
ES L+LA G+ D+ +L++ G ++ E + + PL A G HV +L+E GA
Sbjct: 86 ESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGT---PLLYAVHGNHVKCVKMLLESGA 142
Query: 87 NIEEVNDEGYTPLMEAAREGHEEMVCVL 114
+ D GY + A G+ + V+
Sbjct: 143 DPTIETDSGYNSMDLAVALGYRSVQQVI 170
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 12 LAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAAC 71
L CG VN + +PL A G HV +L+E GA + + TDS + + LA
Sbjct: 104 LLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA---DPTIETDSGYNSMDLAVA 160
Query: 72 GGH 74
G+
Sbjct: 161 LGY 163
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 69/158 (43%), Gaps = 5/158 (3%)
Query: 28 SPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGAN 87
+ L A GH ++ L++ G VN D+ SPL +AA G ++ L+ +GA
Sbjct: 43 TALHWACSAGHTEIVEFLLQLGV---PVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQ 99
Query: 88 IEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADF 147
+ VN G TPL AA + E+ +LL+ GA +A G +
Sbjct: 100 VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHIL 159
Query: 148 L-LKNGANIE-LGASTPLMEAAQEGHLELVRYLLDSGA 183
L K NI+ +TPL A E +E + L+ GA
Sbjct: 160 LYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGA 197
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 55/104 (52%), Gaps = 3/104 (2%)
Query: 19 VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLA 78
VN D+ SPL +AA G ++ L+ +GA + VN + +PL AA ++A
Sbjct: 67 VNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVN---QNGCTPLHYAASKNRHEIA 123
Query: 79 LLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKIN 122
++L+E GAN + + T + AA +G+ +M+ +LL A N
Sbjct: 124 VMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTN 167
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 51/103 (49%), Gaps = 3/103 (2%)
Query: 19 VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLA 78
+N D SPL A G + +LI RGA I +N D +PL LAA GH D+
Sbjct: 32 LNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDD---TPLHLAASHGHRDIV 88
Query: 79 LLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKI 121
L++ A+I VN+ G PL A G +++ L+ GA +
Sbjct: 89 QKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALV 131
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 54/126 (42%), Gaps = 11/126 (8%)
Query: 54 EVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCV 113
++N D SPL A G + +LI RGA I +N TPL AA GH ++V
Sbjct: 31 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQK 90
Query: 114 LLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNGANIEL----------GASTPL 163
LLQ A INA C G VA+ L+ NGA + + A PL
Sbjct: 91 LLQYKADINA-VNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPL 149
Query: 164 MEAAQE 169
E +E
Sbjct: 150 RELLRE 155
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 46/112 (41%), Gaps = 31/112 (27%)
Query: 72 GGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXX 131
G V + L L ++ + +D G++PL A REG +V +L+ +GA+IN
Sbjct: 16 GNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINV-------- 67
Query: 132 XXXXXCCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLELVRYLLDSGA 183
+ G TPL AA GH ++V+ LL A
Sbjct: 68 -----------------------MNRGDDTPLHLAASHGHRDIVQKLLQYKA 96
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 46/102 (45%), Gaps = 10/102 (9%)
Query: 16 GGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHV 75
G +N+ ++PL LAA GH D+ L++ A+I VN + PL A G
Sbjct: 62 GARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVN---EHGNVPLHYACFWGQD 118
Query: 76 DLALLLIERGANIEEVN-------DEGYTPLMEAAREGHEEM 110
+A L+ GA + N D+ PL E RE E+M
Sbjct: 119 QVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKM 160
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 69/158 (43%), Gaps = 5/158 (3%)
Query: 28 SPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGAN 87
+ L A GH ++ L++ G VN D+ SPL +AA G ++ L+ +GA
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGV---PVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQ 98
Query: 88 IEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADF 147
+ VN G TPL AA + E+ +LL+ GA +A G +
Sbjct: 99 VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHIL 158
Query: 148 L-LKNGANIE-LGASTPLMEAAQEGHLELVRYLLDSGA 183
L K NI+ +TPL A E +E + L+ GA
Sbjct: 159 LYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGA 196
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 55/104 (52%), Gaps = 3/104 (2%)
Query: 19 VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLA 78
VN D+ SPL +AA G ++ L+ +GA + VN + +PL AA ++A
Sbjct: 66 VNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVN---QNGCTPLHYAASKNRHEIA 122
Query: 79 LLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKIN 122
++L+E GAN + + T + AA +G+ +M+ +LL A N
Sbjct: 123 VMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTN 166
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 50/105 (47%), Gaps = 4/105 (3%)
Query: 82 IERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGF 141
IE+ I ++EG+TPLM AA G +V LLQ GA C G+
Sbjct: 23 IEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQL-LGKGRESALSLACSKGY 81
Query: 142 LDVADFLLKNGANI---ELGASTPLMEAAQEGHLELVRYLLDSGA 183
D+ LL G ++ + TPL+ A H++ V+ LL+SGA
Sbjct: 82 TDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA 126
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 27 ESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGA 86
ES L+LA G+ D+ +L++ G ++ E + + PL A G HV +L+E GA
Sbjct: 70 ESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGT---PLLYAVHGNHVKCVKMLLESGA 126
Query: 87 NIEEVNDEGYTPLMEAAREGHEEMVCVL 114
+ D GY + A G+ + V+
Sbjct: 127 DPTIETDSGYNSMDLAVALGYRSVQQVI 154
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 33 AACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVN 92
AA G D +L GA +VN +PL LAA GH+++ +L++ GA++
Sbjct: 21 AARAGQDDEVRILTANGA---DVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATG 77
Query: 93 DEGYTPLMEAAREGHEEMVCVLLQKGAKINA 123
+ G TPL AA H E+V VLL+ GA +NA
Sbjct: 78 NTGRTPLHLAAWADHLEIVEVLLKHGADVNA 108
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 98 PLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNGANIEL 157
L+EAAR G ++ V +L GA +NA+ G L++ + LLKNGA++
Sbjct: 17 KLLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAML-GHLEIVEVLLKNGADVNA 75
Query: 158 GAS---TPLMEAAQEGHLELVRYLLDSGA 183
+ TPL AA HLE+V LL GA
Sbjct: 76 TGNTGRTPLHLAAWADHLEIVEVLLKHGA 104
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
Query: 12 LAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAAC 71
L A G VN +PL LAA GH+++ +L++ GA +VN ++ +PL LAA
Sbjct: 33 LTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGA---DVNATGNTGRTPLHLAAW 89
Query: 72 GGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVL 114
H+++ +L++ GA++ + G T + G+E++ +L
Sbjct: 90 ADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 51/103 (49%), Gaps = 3/103 (2%)
Query: 19 VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLA 78
+N D SPL A G + +LI RGA I +N D +PL LAA GH D+
Sbjct: 27 LNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDD---TPLHLAASHGHRDIV 83
Query: 79 LLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKI 121
L++ A+I VN+ G PL A G +++ L+ GA +
Sbjct: 84 QKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALV 126
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 54/126 (42%), Gaps = 11/126 (8%)
Query: 54 EVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCV 113
++N D SPL A G + +LI RGA I +N TPL AA GH ++V
Sbjct: 26 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQK 85
Query: 114 LLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNGANIEL----------GASTPL 163
LLQ A INA C G VA+ L+ NGA + + A PL
Sbjct: 86 LLQYKADINA-VNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPL 144
Query: 164 MEAAQE 169
E +E
Sbjct: 145 RELLRE 150
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 46/102 (45%), Gaps = 10/102 (9%)
Query: 16 GGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHV 75
G +N+ ++PL LAA GH D+ L++ A+I VN + PL A G
Sbjct: 57 GARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVN---EHGNVPLHYACFWGQD 113
Query: 76 DLALLLIERGANIEEVN-------DEGYTPLMEAAREGHEEM 110
+A L+ GA + N D+ PL E RE E+M
Sbjct: 114 QVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKM 155
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 46/112 (41%), Gaps = 31/112 (27%)
Query: 72 GGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXX 131
G V + L L ++ + +D G++PL A REG +V +L+ +GA+IN
Sbjct: 11 GNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINV-------- 62
Query: 132 XXXXXCCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLELVRYLLDSGA 183
+ G TPL AA GH ++V+ LL A
Sbjct: 63 -----------------------MNRGDDTPLHLAASHGHRDIVQKLLQYKA 91
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 51.2 bits (121), Expect = 7e-07, Method: Composition-based stats.
Identities = 27/56 (48%), Positives = 36/56 (64%)
Query: 69 AACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAH 124
AA G D +L+ GA++ + +GYTPL AAREGH E+V VLL+ GA +NA
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQ 64
Score = 38.5 bits (88), Expect = 0.006, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 39/85 (45%), Gaps = 31/85 (36%)
Query: 99 LMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNGANIELG 158
L+EAAR G ++ V +L+ GA +NA K+G
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKD------------------------KDG------ 35
Query: 159 ASTPLMEAAQEGHLELVRYLLDSGA 183
TPL AA+EGHLE+V LL +GA
Sbjct: 36 -YTPLHLAAREGHLEIVEVLLKAGA 59
Score = 34.3 bits (77), Expect = 0.10, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 33 AACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVN 92
AA G D +L+ GA +VN +PL LAA GH+++ +L++ GA++ +
Sbjct: 9 AARAGQDDEVRILMANGA---DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQD 65
Query: 93 DEGYTPLMEAAREGHEEMVCVLLQKGA 119
G T + G+E++ +LQK A
Sbjct: 66 KFGKTAFDISIDNGNEDLA-EILQKAA 91
Score = 29.3 bits (64), Expect = 3.9, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 12 LAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAAC 71
L A G VN +PL LAA GH+++ +L++ GA +VN ++ ++
Sbjct: 21 LMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA---DVNAQDKFGKTAFDISID 77
Query: 72 GGHVDLALLL 81
G+ DLA +L
Sbjct: 78 NGNEDLAEIL 87
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 79/182 (43%), Gaps = 6/182 (3%)
Query: 6 FESPLTLAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESP 65
+E L G V P + L AA +DL I +GA ++++ +S +P
Sbjct: 22 YERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNS--TP 79
Query: 66 LTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHX 125
L A GH+ + + L++ GA+ ++ EG + + AA+ GH +V L+ KG ++
Sbjct: 80 LHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMD 139
Query: 126 XXXXXXXXXXXCCGGFLDVADFLLKNGANIELG----ASTPLMEAAQEGHLELVRYLLDS 181
+D LL ++ LG +T L A G+ ++ LL++
Sbjct: 140 QNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEA 199
Query: 182 GA 183
GA
Sbjct: 200 GA 201
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 7/103 (6%)
Query: 12 LAACGGHVNMPTDSFESPLTLAACGGH-VDLALLLIERGANIEEVNMPTDSFE--SPLTL 68
L A G V+M + +PL AA H VD LL+ + VN+ D + + L
Sbjct: 128 LIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVS---VNLG-DKYHKNTALHW 183
Query: 69 AACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMV 111
A G+ + LL+E GAN++ N +G + L A + + M+
Sbjct: 184 AVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMI 226
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 51/91 (56%), Gaps = 3/91 (3%)
Query: 33 AACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVN 92
AA G D +L+ GA +VN +PL LAA H+++ +L++ GA++ ++
Sbjct: 21 AARAGQDDEVRILMANGA---DVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAID 77
Query: 93 DEGYTPLMEAAREGHEEMVCVLLQKGAKINA 123
G TPL A GH E+V VLL+ GA +NA
Sbjct: 78 AIGETPLHLVAMYGHLEIVEVLLKHGADVNA 108
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 98 PLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNGAN--- 154
L+EAAR G ++ V +L+ GA +NA L++ + LLKNGA+
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNAE-DKVGLTPLHLAAMNDHLEIVEVLLKNGADVNA 75
Query: 155 IELGASTPLMEAAQEGHLELVRYLLDSGA 183
I+ TPL A GHLE+V LL GA
Sbjct: 76 IDAIGETPLHLVAMYGHLEIVEVLLKHGA 104
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 55/104 (52%), Gaps = 3/104 (2%)
Query: 11 TLAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAA 70
L A G VN +PL LAA H+++ +L++ GA++ ++ E+PL L A
Sbjct: 32 ILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIG---ETPLHLVA 88
Query: 71 CGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVL 114
GH+++ +L++ GA++ + G T + G+E++ +L
Sbjct: 89 MYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 69 AACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXX 128
AA G D +L+ GA++ + G TPL AA H E+V VLL+ GA +NA
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNA-IDAI 79
Query: 129 XXXXXXXXCCGGFLDVADFLLKNGANI 155
G L++ + LLK+GA++
Sbjct: 80 GETPLHLVAMYGHLEIVEVLLKHGADV 106
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Query: 3 TDSFESPLTLAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSF 62
D E L G VN E+PL L A GH+++ +L++ GA++ D F
Sbjct: 57 NDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVN----AQDKF 112
Query: 63 -ESPLTLAACGGHVDLALLL 81
++ ++ G+ DLA +L
Sbjct: 113 GKTAFDISIDNGNEDLAEIL 132
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 80/173 (46%), Gaps = 10/173 (5%)
Query: 27 ESPLTLAACGGHVDLALLLIERGA--NIEEVNMPTDSFESPLTLAACGGHVDLALLLIER 84
E+ L LAA D A L+E A NI++ NM + ++ A G +L+ R
Sbjct: 26 ETALHLAARYSRSDAAKRLLEASADANIQD-NMGRTPLHAAVSADAQGV---FQILIRNR 81
Query: 85 GANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDV 144
+++ +G TPL+ AAR E M+ L+ A +NA +D
Sbjct: 82 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA-VDDLGKSALHWAAAVNNVDA 140
Query: 145 ADFLLKNGANIELGAS---TPLMEAAQEGHLELVRYLLDSGAQEMQTKHIDIL 194
A LLKNGAN ++ + TPL AA+EG E + LLD A T H+D L
Sbjct: 141 AVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRL 193
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 80/173 (46%), Gaps = 10/173 (5%)
Query: 27 ESPLTLAACGGHVDLALLLIERGA--NIEEVNMPTDSFESPLTLAACGGHVDLALLLIER 84
E+ L LAA D A L+E A NI++ NM + ++ A G +L+ R
Sbjct: 59 ETALHLAARYSRSDAAKRLLEASADANIQD-NMGRTPLHAAVSADAQGV---FQILIRNR 114
Query: 85 GANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDV 144
+++ +G TPL+ AAR E M+ L+ A +NA +D
Sbjct: 115 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA-VDDLGKSALHWAAAVNNVDA 173
Query: 145 ADFLLKNGANIELGAS---TPLMEAAQEGHLELVRYLLDSGAQEMQTKHIDIL 194
A LLKNGAN ++ + TPL AA+EG E + LLD A T H+D L
Sbjct: 174 AVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRL 226
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 80/173 (46%), Gaps = 10/173 (5%)
Query: 27 ESPLTLAACGGHVDLALLLIERGA--NIEEVNMPTDSFESPLTLAACGGHVDLALLLIER 84
E+ L LAA D A L+E A NI++ NM + ++ A G +L+ R
Sbjct: 58 ETALHLAARYSRSDAAKRLLEASADANIQD-NMGRTPLHAAVSADAQGV---FQILIRNR 113
Query: 85 GANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDV 144
+++ +G TPL+ AAR E M+ L+ A +NA +D
Sbjct: 114 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA-VDDLGKSALHWAAAVNNVDA 172
Query: 145 ADFLLKNGANIELGAS---TPLMEAAQEGHLELVRYLLDSGAQEMQTKHIDIL 194
A LLKNGAN ++ + TPL AA+EG E + LLD A T H+D L
Sbjct: 173 AVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRL 225
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 79/172 (45%), Gaps = 10/172 (5%)
Query: 28 SPLTLAACGGHVDLALLLIERGA--NIEEVNMPTDSFESPLTLAACGGHVDLALLLIERG 85
+ L LAA D A L+E A NI++ NM + ++ A G +L+ R
Sbjct: 59 TALHLAAAYSRSDAAKRLLEASADANIQD-NMGRTPLHAAVSADAQGV---FQILIRNRA 114
Query: 86 ANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVA 145
+++ +G TPL+ AAR E M+ L+ A +NA +D A
Sbjct: 115 TDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA-VDDLGKSALHWAAAVNNVDAA 173
Query: 146 DFLLKNGANIELGAS---TPLMEAAQEGHLELVRYLLDSGAQEMQTKHIDIL 194
LLKNGAN ++ + TPL AA+EG E + LLD A T H+D L
Sbjct: 174 VVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRL 225
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 78/172 (45%), Gaps = 8/172 (4%)
Query: 27 ESPLTLAACGGHVDLALLLIERGANIE-EVNMPTDSFESPLTLAACGGHVDLALLLIERG 85
E+ L LAA D A L+E A+ + NM + ++ A G +LL R
Sbjct: 23 ETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGV---FQILLRNRA 79
Query: 86 ANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVA 145
+++ +G TPL+ AAR E M+ L+ A +NA +D A
Sbjct: 80 TDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNA-VDDLGKSALHWAAAVNNVDAA 138
Query: 146 DFLLKNGANIELGAS---TPLMEAAQEGHLELVRYLLDSGAQEMQTKHIDIL 194
LLKNGAN ++ + TPL AA+EG E + LLD A T H+D L
Sbjct: 139 VVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRL 190
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
Query: 28 SPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGAN 87
+PL AA V + L++ GA +V+ PL A GH ++A LL++ GA
Sbjct: 44 TPLHFAAGYNRVSVVEYLLQHGA---DVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAV 100
Query: 88 IEEVNDEGYTPLMEAAREGHEEMVCVLLQKGA 119
+ + +TPL EAA +G E+ +LLQ GA
Sbjct: 101 VNVADLWKFTPLHEAAAKGKYEICKLLLQHGA 132
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Query: 87 NIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVAD 146
N ++ TPL AA +V LLQ GA ++A C G +VA+
Sbjct: 34 NCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHA-KDKGGLVPLHNACSYGHYEVAE 92
Query: 147 FLLKNGANI---ELGASTPLMEAAQEGHLELVRYLLDSGA 183
L+K+GA + +L TPL EAA +G E+ + LL GA
Sbjct: 93 LLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGA 132
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 29 PLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANI 88
PL A GH ++A LL++ GA VN+ +PL AA G ++ LL++ GA+
Sbjct: 78 PLHNACSYGHYEVAELLVKHGA---VVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADP 134
Query: 89 EEVNDEGYTPL 99
+ N +G TPL
Sbjct: 135 TKKNRDGNTPL 145
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
Query: 28 SPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGAN 87
+PL AA V + L++ GA +V+ PL A GH ++A LL++ GA
Sbjct: 46 TPLHFAAGYNRVSVVEYLLQHGA---DVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAV 102
Query: 88 IEEVNDEGYTPLMEAAREGHEEMVCVLLQKGA 119
+ + +TPL EAA +G E+ +LLQ GA
Sbjct: 103 VNVADLWKFTPLHEAAAKGKYEICKLLLQHGA 134
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Query: 87 NIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVAD 146
N ++ TPL AA +V LLQ GA ++A C G +VA+
Sbjct: 36 NCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHA-KDKGGLVPLHNACSYGHYEVAE 94
Query: 147 FLLKNGANI---ELGASTPLMEAAQEGHLELVRYLLDSGA 183
L+K+GA + +L TPL EAA +G E+ + LL GA
Sbjct: 95 LLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGA 134
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 29 PLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANI 88
PL A GH ++A LL++ GA VN+ +PL AA G ++ LL++ GA+
Sbjct: 80 PLHNACSYGHYEVAELLVKHGA---VVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADP 136
Query: 89 EEVNDEGYTPL 99
+ N +G TPL
Sbjct: 137 TKKNRDGNTPL 147
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 52/120 (43%), Gaps = 31/120 (25%)
Query: 64 SPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINA 123
+PL LAA V + LL++ GA++ + G PL A GH E+ +LL+ GA +NA
Sbjct: 60 TPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNA 119
Query: 124 HXXXXXXXXXXXXCCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLELVRYLLDSGA 183
+D+ F TPL EAA + +E+ LL GA
Sbjct: 120 ------------------MDLWQF-------------TPLHEAASKNRVEVCSLLLSHGA 148
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 51/100 (51%), Gaps = 6/100 (6%)
Query: 28 SPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGAN 87
+PL LAA V + LL++ GA +V+ PL A GH ++ LL++ GA
Sbjct: 60 TPLHLAAGYNRVRIVQLLLQHGA---DVHAKDKGGLVPLHNACSYGHYEVTELLLKHGAC 116
Query: 88 IEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAK---INAH 124
+ ++ +TPL EAA + E+ +LL GA +N H
Sbjct: 117 VNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCH 156
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 61/142 (42%), Gaps = 35/142 (24%)
Query: 46 IERGANIEEVNMPT-DSFESPLTLAACGGH---VDLALLLIERGANIEEVNDEGYTPLME 101
+++ +E +N S E+ L A H +A LL+ +GAN+ E N + TPL
Sbjct: 194 VKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHV 253
Query: 102 AAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNGANIELGAST 161
AA H +++ VL + GAK+NA LD LG T
Sbjct: 254 AAERAHNDVMEVLHKHGAKMNA------------------LD------------SLG-QT 282
Query: 162 PLMEAAQEGHLELVRYLLDSGA 183
L AA GHL+ R LL G+
Sbjct: 283 ALHRAALAGHLQTCRLLLSYGS 304
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
Query: 99 LMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCG-GFLDVADFLLKNGANI-- 155
L+EAAR G+EE + LL +N H G + + LL++GA++
Sbjct: 28 LLEAARSGNEEKLMALLTP-LNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHA 86
Query: 156 -ELGASTPLMEAAQEGHLELVRYLLDSGA 183
+ G PL A GH E+ LL GA
Sbjct: 87 KDKGGLVPLHNACSYGHYEVTELLLKHGA 115
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 76/185 (41%), Gaps = 35/185 (18%)
Query: 29 PLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANI 88
PL A GH ++ LL++ GA + +++ F +PL AA V++ LL+ GA+
Sbjct: 94 PLHNACSYGHYEVTELLLKHGACVNAMDLW--QF-TPLHEAASKNRVEVCSLLLSHGADP 150
Query: 89 EEVNDEGY-------TP--------------LMEAAREGHEEMVCVLLQKGAKINAHXXX 127
VN G TP L++AARE ++ V +I +
Sbjct: 151 TLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREA--DLAKVKKTLALEI-INFKQ 207
Query: 128 XXXXXXXXXCCGGFL-----DVADFLLKNGANIELGAS---TPLMEAAQEGHLELVRYLL 179
C L VA+ LL+ GAN+ TPL AA+ H +++ L
Sbjct: 208 PQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLH 267
Query: 180 DSGAQ 184
GA+
Sbjct: 268 KHGAK 272
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
Query: 28 SPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGAN 87
+PL AA V + L++ GA +V+ PL A GH ++A LL++ GA
Sbjct: 48 TPLHFAAGYNRVSVVEYLLQHGA---DVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAV 104
Query: 88 IEEVNDEGYTPLMEAAREGHEEMVCVLLQKGA 119
+ + +TPL EAA +G E+ +LLQ GA
Sbjct: 105 VNVADLWKFTPLHEAAAKGKYEICKLLLQHGA 136
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Query: 87 NIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVAD 146
N ++ TPL AA +V LLQ GA ++A C G +VA+
Sbjct: 38 NCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHA-KDKGGLVPLHNACSYGHYEVAE 96
Query: 147 FLLKNGANI---ELGASTPLMEAAQEGHLELVRYLLDSGA 183
L+K+GA + +L TPL EAA +G E+ + LL GA
Sbjct: 97 LLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGA 136
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 29 PLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANI 88
PL A GH ++A LL++ GA VN+ +PL AA G ++ LL++ GA+
Sbjct: 82 PLHNACSYGHYEVAELLVKHGA---VVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADP 138
Query: 89 EEVNDEGYTPL 99
+ N +G TPL
Sbjct: 139 TKKNRDGNTPL 149
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 28 SPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGAN 87
SPL LAA GH +L+ G + + T +PL +AA GH ++ +L++ GA+
Sbjct: 36 SPLHLAAQYGHFSTTEVLLRAGVS---RDARTKVDRTPLHMAASEGHANIVEVLLKHGAD 92
Query: 88 IEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKIN 122
+ + T L A H+E+V +L++ GA ++
Sbjct: 93 VNAKDMLKMTALHWATEHNHQEVVELLIKYGADVH 127
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Query: 33 AACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVN 92
AA G D +L+ GA + T SPL LAA GH +L+ G + +
Sbjct: 9 AARAGQDDEVRILMANGAPFTTDWLGT----SPLHLAAQYGHFSTTEVLLRAGVSRDART 64
Query: 93 DEGYTPLMEAAREGHEEMVCVLLQKGAKINA 123
TPL AA EGH +V VLL+ GA +NA
Sbjct: 65 KVDRTPLHMAASEGHANIVEVLLKHGADVNA 95
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 16/94 (17%)
Query: 8 SPLTLAACGGHV-------------NMPTDSFESPLTLAACGGHVDLALLLIERGANIEE 54
SPL LAA GH + T +PL +AA GH ++ +L++ GA++
Sbjct: 36 SPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNA 95
Query: 55 VNMPTDSFESPLTLAACGGHVDLALLLIERGANI 88
+M + L A H ++ LLI+ GA++
Sbjct: 96 KDMLK---MTALHWATEHNHQEVVELLIKYGADV 126
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 37/89 (41%), Gaps = 5/89 (5%)
Query: 98 PLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNGANIEL 157
L+EAAR G ++ V +L+ GA G + LL+ G + +
Sbjct: 5 KLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQY--GHFSTTEVLLRAGVSRDA 62
Query: 158 GAS---TPLMEAAQEGHLELVRYLLDSGA 183
TPL AA EGH +V LL GA
Sbjct: 63 RTKVDRTPLHMAASEGHANIVEVLLKHGA 91
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 50/101 (49%), Gaps = 5/101 (4%)
Query: 80 LLIERGANIEEVN-DEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCC 138
LL+ERGA+I+ V+ G +PL+ A MV +LLQ GA +NA
Sbjct: 134 LLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSAS-G 192
Query: 139 GGFLDVADFLLKNGANIELG---ASTPLMEAAQEGHLELVR 176
G L + L+++GA+ L TPLM A ++++R
Sbjct: 193 RGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR 233
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 47/100 (47%), Gaps = 3/100 (3%)
Query: 87 NIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVAD 146
++E N +G T L A +E V +LL++GA I+A L +
Sbjct: 108 DLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQ 167
Query: 147 FLLKNGANIE---LGASTPLMEAAQEGHLELVRYLLDSGA 183
LL++GAN+ S+ L A+ G L LVR L+ SGA
Sbjct: 168 LLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGA 207
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 44 LLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAA 103
LL+ERGA+I+ V++ S SPL A + + LL++ GAN+ G + L A+
Sbjct: 134 LLLERGADIDAVDI--KSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSAS 191
Query: 104 REGHEEMVCVLLQKGA 119
G +V L++ GA
Sbjct: 192 GRGLLPLVRTLVRSGA 207
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 25 SFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIER 84
S SPL A + + LL++ GAN VN S S L A+ G + L L+
Sbjct: 149 SGRSPLIHAVENNSLSMVQLLLQHGAN---VNAQMYSGSSALHSASGRGLLPLVRTLVRS 205
Query: 85 GANIEEVNDEGYTPLMEA 102
GA+ N TPLM A
Sbjct: 206 GADSSLKNCHNDTPLMVA 223
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 61/129 (47%), Gaps = 37/129 (28%)
Query: 28 SPLTLAACGGHVDLALLLIERGANIEEVNMPTDS-------------------FESP--- 65
+PL +A +++A LI+RGA+I N +DS +P
Sbjct: 41 TPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLN 100
Query: 66 ---------LTLAACGGHVDLALLLIERGA-NIEEVNDEGYTPLMEAA--REG---HEEM 110
L AA GH+D LL+E G +I+ ND GYT L+EA REG ++++
Sbjct: 101 KHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDI 160
Query: 111 VCVLLQKGA 119
V +L++ GA
Sbjct: 161 VKLLMENGA 169
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 55/124 (44%), Gaps = 32/124 (25%)
Query: 64 SPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGA-KIN 122
+PL +A +++A LI+RGA+I N +P + A +G E++ +L+ +N
Sbjct: 41 TPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLN 100
Query: 123 AHXXXXXXXXXXXXCCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLELVRYLLDSG 182
H + G N L+ AA++GH++ V+ LL+ G
Sbjct: 101 KHN------------------------RYGGN-------ALIPAAEKGHIDNVKLLLEDG 129
Query: 183 AQEM 186
+++
Sbjct: 130 REDI 133
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 33/56 (58%)
Query: 69 AACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAH 124
AA G D +L+ GA++ + G TPL AAR GH E+V +LL+ GA +NA
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQ 68
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 31/86 (36%)
Query: 98 PLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNGANIEL 157
L+EAAR G ++ V +L+ GA + A KNG
Sbjct: 9 KLLEAARAGQDDEVRILMANGADVAAKD------------------------KNG----- 39
Query: 158 GASTPLMEAAQEGHLELVRYLLDSGA 183
STPL AA+ GHLE+V+ LL++GA
Sbjct: 40 --STPLHLAARNGHLEVVKLLLEAGA 63
Score = 34.3 bits (77), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 33 AACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVN 92
AA G D +L+ GA +V + +PL LAA GH+++ LL+E GA++ +
Sbjct: 13 AARAGQDDEVRILMANGA---DVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQD 69
Query: 93 DEGYTPLMEAAREGHEEMVCVL 114
G T + G+E++ +L
Sbjct: 70 KFGKTAFDISIDNGNEDLAEIL 91
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 12 LAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSF-ESPLTLAA 70
L A G V + +PL LAA GH+++ LL+E GA++ D F ++ ++
Sbjct: 25 LMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVN----AQDKFGKTAFDISI 80
Query: 71 CGGHVDLALLL 81
G+ DLA +L
Sbjct: 81 DNGNEDLAEIL 91
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 51/99 (51%), Gaps = 6/99 (6%)
Query: 28 SPLTL---AACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIER 84
+PL L ++ G DL +I +++ ++P D + L A C GH ++ L++
Sbjct: 36 NPLALLLDSSLEGEFDLVQRII---YEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQF 92
Query: 85 GANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINA 123
G N+ + +G+TPL AA + ++ L++ GA + A
Sbjct: 93 GVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFA 131
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 20 NMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLAL 79
++P D + L A C GH ++ L++ G N VN +PL AA +V +
Sbjct: 64 SLPNDEGITALHNAVCAGHTEIVKFLVQFGVN---VNAADSDGWTPLHCAASCNNVQVCK 120
Query: 80 LLIERGANI 88
L+E GA +
Sbjct: 121 FLVESGAAV 129
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Query: 138 CGGFLDVADFLLKNGANIELGAS---TPLMEAAQEGHLELVRYLLDSGAQEMQTKHIDIL 194
C G ++ FL++ G N+ S TPL AA ++++ ++L++SGA + D +
Sbjct: 79 CAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSD-M 137
Query: 195 EFKKRKQEESKAAFCRGSESTPTVSSKQAV 224
+ K EE + + + S+ V K +
Sbjct: 138 QTAADKCEEMEEGYTQCSQFLYGVQEKMGI 167
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 37 GHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGY 96
G DL +I +++ ++P D + L A C GH ++ L++ G N+ + +G+
Sbjct: 48 GEFDLVQRII---YEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGW 104
Query: 97 TPLMEAAREGHEEMVCVLLQKGAKINA 123
TPL AA + ++ L++ GA + A
Sbjct: 105 TPLHCAASCNNVQVCKFLVESGAAVFA 131
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 20 NMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLAL 79
++P D + L A C GH ++ L++ G N VN +PL AA +V +
Sbjct: 64 SLPNDEGITALHNAVCAGHTEIVKFLVQFGVN---VNAADSDGWTPLHCAASCNNVQVCK 120
Query: 80 LLIERGANI 88
L+E GA +
Sbjct: 121 FLVESGAAV 129
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Query: 138 CGGFLDVADFLLKNGANIELGAS---TPLMEAAQEGHLELVRYLLDSGAQEMQTKHIDIL 194
C G ++ FL++ G N+ S TPL AA ++++ ++L++SGA + D +
Sbjct: 79 CAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSD-M 137
Query: 195 EFKKRKQEESKAAFCRGSESTPTVSSKQAV 224
+ K EE + + + S+ V K +
Sbjct: 138 QTAADKCEEMEEGYTQCSQFLYGVQEKMGI 167
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 31/121 (25%)
Query: 63 ESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKIN 122
E+ L +A+ G + L++ G++ + G+TPL EA GH ++V +LLQ A +N
Sbjct: 11 ETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVN 70
Query: 123 AHXXXXXXXXXXXXCCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLELVRYLLDSG 182
G+ + +PL +AA+ GH+++V+ LL G
Sbjct: 71 ---------------TTGYQN----------------DSPLHDAAKNGHVDIVKLLLSYG 99
Query: 183 A 183
A
Sbjct: 100 A 100
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 51/97 (52%), Gaps = 3/97 (3%)
Query: 27 ESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGA 86
E+ L +A+ G + L++ G+ + N+ + +PL A GH+ + LL++ A
Sbjct: 11 ETLLHIASIKGDIPSVEYLLQNGS---DPNVKDHAGWTPLHEACNHGHLKVVELLLQHKA 67
Query: 87 NIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINA 123
+ + +PL +AA+ GH ++V +LL GA NA
Sbjct: 68 LVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNA 104
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 20 NMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLAL 79
N+ + +PL A GH+ + LL++ A + DS PL AA GHVD+
Sbjct: 37 NVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDS---PLHDAAKNGHVDIVK 93
Query: 80 LLIERGANIEEVNDEGYTPL 99
LL+ GA+ VN G P+
Sbjct: 94 LLLSYGASRNAVNIFGLRPV 113
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 37/70 (52%)
Query: 50 ANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEE 109
A E+VN + PL AA G +++ L+ +GA+I + TPL+ A EGH
Sbjct: 28 AKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVS 87
Query: 110 MVCVLLQKGA 119
V +LL KGA
Sbjct: 88 CVKLLLSKGA 97
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Query: 99 LMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNGANI--- 155
M A + G + V + KG +N CG L++ +FLL GA+I
Sbjct: 11 FMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQ-LEILEFLLLKGADINAP 69
Query: 156 ELGASTPLMEAAQEGHLELVRYLLDSGAQE 185
+ TPL+ A EGH+ V+ LL GA +
Sbjct: 70 DKHHITPLLSAVYEGHVSCVKLLLSKGADK 99
Score = 35.0 bits (79), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 14 ACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGG 73
A G VN + PL AA G +++ L+ +GA+I N P +PL A G
Sbjct: 28 AKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI---NAPDKHHITPLLSAVYEG 84
Query: 74 HVDLALLLIERGAN 87
HV LL+ +GA+
Sbjct: 85 HVSCVKLLLSKGAD 98
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%)
Query: 53 EEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVC 112
E+VN + PL AA G +++ L+ +GA+I + TPL+ A EGH V
Sbjct: 26 EDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVK 85
Query: 113 VLLQKGA 119
+LL KGA
Sbjct: 86 LLLSKGA 92
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 14 ACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGG 73
A G VN + PL AA G +++ L+ +GA+I N P +PL A G
Sbjct: 23 AKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI---NAPDKHHITPLLSAVYEG 79
Query: 74 HVDLALLLIERGANIEEVNDEGYTPL 99
HV LL+ +GA+ +G T L
Sbjct: 80 HVSCVKLLLSKGADKTVKGPDGLTAL 105
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Query: 99 LMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNGANI--- 155
M A + G + V + KG +N CG L++ +FLL GA+I
Sbjct: 6 FMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQ-LEILEFLLLKGADINAP 64
Query: 156 ELGASTPLMEAAQEGHLELVRYLLDSGAQE 185
+ TPL+ A EGH+ V+ LL GA +
Sbjct: 65 DKHHITPLLSAVYEGHVSCVKLLLSKGADK 94
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 82/188 (43%), Gaps = 9/188 (4%)
Query: 12 LAACGGHVNMPTD-SFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAA 70
L A G +N D + E+ L LAA D A L++ GA + N ++ +PL A
Sbjct: 36 LLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGA---DANSQDNTGRTPLHAAV 92
Query: 71 CGGHVDL-ALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXX 129
+ + +LL R N+ +G TPL+ AAR E MV L+ A INA
Sbjct: 93 AADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGK 152
Query: 130 XXXXXXXCCGGFLDVADFLLKNGANIELGAS---TPLMEAAQEGHLELVRYLLDSGAQEM 186
+ + LL + AN + TPL AA+EG E + LLD+ A
Sbjct: 153 TALHWAAAVNNT-EAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANRE 211
Query: 187 QTKHIDIL 194
T H+D L
Sbjct: 212 ITDHMDRL 219
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 46 IERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAARE 105
+ GA++ VN D+ +PL A + L++ GAN+ + + G PL A
Sbjct: 220 LAHGADVNWVNGGQDN-ATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATIL 278
Query: 106 GHEEMVCVLLQKGAKINA 123
GH + C+ L++GA + A
Sbjct: 279 GHTGLACLFLKRGADLGA 296
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 28 SPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGAN 87
+PL A + L++ GAN VN + PL A GH LA L ++RGA+
Sbjct: 237 TPLIQATAANSLLACEFLLQNGAN---VNQADSAGRGPLHHATILGHTGLACLFLKRGAD 293
Query: 88 IEEVNDEGYTPLMEAAREGHEEMVCVL 114
+ + EG PL A + ++V +L
Sbjct: 294 LGARDSEGRDPLTIAMETANADIVTLL 320
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 16 GGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHV 75
G +VN + PL A GH LA L ++RGA++ + PLT+A +
Sbjct: 258 GANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARD---SEGRDPLTIAMETANA 314
Query: 76 DLALLL 81
D+ LL
Sbjct: 315 DIVTLL 320
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 58/134 (43%), Gaps = 21/134 (15%)
Query: 1 MPTDSFESPLTLAACGGHVNMPTDSFESPLT---------------LAACGGHVDLALLL 45
P DS +P +A G++ + ++ PL LA +++ L
Sbjct: 67 YPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFL 126
Query: 46 IERGANIEEVNMPTDSF-ESPLTLAACGGHVDLALLLIERGANIEEVND-EGYTPLMEAA 103
IE GA++ D F + PL AA G + L LL G + D +G+TPL A
Sbjct: 127 IENGASVR----IKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHAL 182
Query: 104 REGHEEMVCVLLQK 117
EGH + +L++K
Sbjct: 183 AEGHGDAAVLLVEK 196
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 6/104 (5%)
Query: 92 NDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGG-FLDVADFLLK 150
+D G+TP A G+ E+V L + K + + G + +V+ FL++
Sbjct: 69 DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE 128
Query: 151 NGANIELG---ASTPLMEAAQEGHLELVRYL--LDSGAQEMQTK 189
NGA++ + PL AA G L+L+ L L A Q K
Sbjct: 129 NGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDK 172
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Query: 20 NMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLAL 79
+ P DS +P +A G++++ L +R ++N T+ + L LA +++
Sbjct: 66 DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLK-PDLNKITNQGVTCLHLAVGKKWFEVSQ 124
Query: 80 LLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVL 114
LIE GA++ + PL AA G +++ +L
Sbjct: 125 FLIENGASVRIKDKFNQIPLHRAASVGSLKLIELL 159
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 46 IERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAARE 105
+ GA++ VN D+ +PL A + L++ GAN+ + + G PL A
Sbjct: 220 LAHGADVNWVNGGQDN-ATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATIL 278
Query: 106 GHEEMVCVLLQKGAKINA 123
GH + C+ L++GA + A
Sbjct: 279 GHTGLACLFLKRGADLGA 296
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 28 SPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGAN 87
+PL A + L++ GAN VN + PL A GH LA L ++RGA+
Sbjct: 237 TPLIQATAANSLLACEFLLQNGAN---VNQADSAGRGPLHHATILGHTGLACLFLKRGAD 293
Query: 88 IEEVNDEGYTPLMEAAREGHEEMVCVL 114
+ + EG PL A + ++V +L
Sbjct: 294 LGARDSEGRDPLTIAMETANADIVTLL 320
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 16 GGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHV 75
G +VN + PL A GH LA L ++RGA++ + PLT+A +
Sbjct: 258 GANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARD---SEGRDPLTIAMETANA 314
Query: 76 DLALLL 81
D+ LL
Sbjct: 315 DIVTLL 320
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 49/88 (55%), Gaps = 6/88 (6%)
Query: 42 ALLLIERGANIEEVNMPTDSFE-----SPLTLAACGGHVDLALLLI-ERGANIEEVNDEG 95
A LL+E+GA ++ E + L AA + + L+ E+G+N ++ +++G
Sbjct: 254 AKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDG 313
Query: 96 YTPLMEAAREGHEEMVCVLLQKGAKINA 123
TP+ AA+EG E+V L+Q+GA + A
Sbjct: 314 KTPIXLAAQEGRIEVVXYLIQQGASVEA 341
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 76/187 (40%), Gaps = 20/187 (10%)
Query: 14 ACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACG- 72
A G VN +PL LA L L + GA+ N S S L AA
Sbjct: 154 AAGADVNAXDCDENTPLXLAVLARRRRLVAYLXKAGADPTIYNK---SERSALHQAAANR 210
Query: 73 --GHVDLALLLIERGANIEEVNDEGYTPL-MEAAREGHEEMVC--VLLQKGAKINAHXXX 127
G L + +IEE++ G T L + A EG +++ +L++KGAK++
Sbjct: 211 DFGXXVYXLNSTKLKGDIEELDRNGXTALXIVAHNEGRDQVASAKLLVEKGAKVDYDGAA 270
Query: 128 XXXXXXXXXCCGGFLD-------VADFLL-KNGANIEL---GASTPLMEAAQEGHLELVR 176
+ +L+ + G+N + TP+ AAQEG +E+V
Sbjct: 271 RKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVX 330
Query: 177 YLLDSGA 183
YL+ GA
Sbjct: 331 YLIQQGA 337
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 41 LALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLM 100
+ L+ E+G+N ++ + + ++P+ LAA G +++ LI++GA++E V+ +T
Sbjct: 295 VKYLVGEKGSNKDKQD---EDGKTPIXLAAQEGRIEVVXYLIQQGASVEAVDATDHTARQ 351
Query: 101 EAAREGHEEMVCVL 114
A H +V +
Sbjct: 352 LAQANNHHNIVDIF 365
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 22/30 (73%)
Query: 27 ESPLTLAACGGHVDLALLLIERGANIEEVN 56
++P+ LAA G +++ LI++GA++E V+
Sbjct: 314 KTPIXLAAQEGRIEVVXYLIQQGASVEAVD 343
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 58/133 (43%), Gaps = 21/133 (15%)
Query: 2 PTDSFESPLTLAACGGHVNMPTDSFESPLT---------------LAACGGHVDLALLLI 46
P DS +P +A G++ + ++ PL LA +++ LI
Sbjct: 68 PDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLI 127
Query: 47 ERGANIEEVNMPTDSF-ESPLTLAACGGHVDLALLLIERGANIEEVND-EGYTPLMEAAR 104
E GA++ D F + PL AA G + L LL G + D +G+TPL A
Sbjct: 128 ENGASVR----IKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALA 183
Query: 105 EGHEEMVCVLLQK 117
EGH + +L++K
Sbjct: 184 EGHGDAAVLLVEK 196
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 6/104 (5%)
Query: 92 NDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGG-FLDVADFLLK 150
+D G+TP A G+ E+V L + K + + G + +V+ FL++
Sbjct: 69 DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE 128
Query: 151 NGANIELG---ASTPLMEAAQEGHLELVRYL--LDSGAQEMQTK 189
NGA++ + PL AA G L+L+ L L A Q K
Sbjct: 129 NGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDK 172
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Query: 20 NMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLAL 79
+ P DS +P +A G++++ L +R ++N T+ + L LA +++
Sbjct: 66 DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLK-PDLNKITNQGVTCLHLAVGKKWFEVSQ 124
Query: 80 LLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVL 114
LIE GA++ + PL AA G +++ +L
Sbjct: 125 FLIENGASVRIKDKFNQIPLHRAASVGSLKLIELL 159
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 58/134 (43%), Gaps = 21/134 (15%)
Query: 1 MPTDSFESPLTLAACGGHVNMPTDSFESPLT---------------LAACGGHVDLALLL 45
P DS +P +A G++ + ++ PL LA +++ L
Sbjct: 67 YPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFL 126
Query: 46 IERGANIEEVNMPTDSF-ESPLTLAACGGHVDLALLLIERGANIEEVND-EGYTPLMEAA 103
IE GA++ D F + PL AA G + L LL G + D +G+TPL A
Sbjct: 127 IENGASVR----IKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHAL 182
Query: 104 REGHEEMVCVLLQK 117
EGH + +L++K
Sbjct: 183 AEGHGDAAVLLVEK 196
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 6/104 (5%)
Query: 92 NDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGG-FLDVADFLLK 150
+D G+TP A G+ E+V L + K + + G + +V+ FL++
Sbjct: 69 DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE 128
Query: 151 NGANIELG---ASTPLMEAAQEGHLELVRYL--LDSGAQEMQTK 189
NGA++ + PL AA G L+L+ L L A Q K
Sbjct: 129 NGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDK 172
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Query: 20 NMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLAL 79
+ P DS +P +A G++++ L +R ++N T+ + L LA +++
Sbjct: 66 DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLK-PDLNKITNQGVTCLHLAVGKKWFEVSQ 124
Query: 80 LLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVL 114
LIE GA++ + PL AA G +++ +L
Sbjct: 125 FLIENGASVRIKDKFNQIPLHRAASVGSLKLIELL 159
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 46 IERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAARE 105
+ GA++ VN D+ +PL A + L++ GAN+ + + G PL A
Sbjct: 220 LAHGADVNWVNGGQDN-ATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATIL 278
Query: 106 GHEEMVCVLLQKGAKINA 123
GH + C+ L++GA + A
Sbjct: 279 GHTGLACLFLKRGADLGA 296
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 28 SPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGAN 87
+PL A + L++ GAN VN + PL A GH LA L ++RGA+
Sbjct: 237 TPLIQATAANSLLACEFLLQNGAN---VNQADSAGRGPLHHATILGHTGLACLFLKRGAD 293
Query: 88 IEEVNDEGYTPLMEAAREGHEEMVCVL 114
+ + EG PL A + ++V +L
Sbjct: 294 LGARDSEGRDPLTIAMETANADIVTLL 320
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 16 GGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHV 75
G +VN + PL A GH LA L ++RGA++ + PLT+A +
Sbjct: 258 GANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARD---SEGRDPLTIAMETANA 314
Query: 76 DLALLL 81
D+ LL
Sbjct: 315 DIVTLL 320
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 55/117 (47%), Gaps = 4/117 (3%)
Query: 81 LIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGG 140
L R +++ +G TPL+ AAR E M+ L+ A +NA
Sbjct: 1 LRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNA-VDDLGKSALHWAAAVN 59
Query: 141 FLDVADFLLKNGANIELGAS---TPLMEAAQEGHLELVRYLLDSGAQEMQTKHIDIL 194
+D A LLKNGAN ++ + TPL AA+EG E + LLD A T H+D L
Sbjct: 60 NVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRL 116
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 32/56 (57%)
Query: 69 AACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAH 124
AA G D +L+ GA++ + G TPL AAR GH E+V +LL+ GA + A
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQ 86
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 31/86 (36%)
Query: 98 PLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNGANIEL 157
L+EAAR G ++ V +L+ GA + A KNG
Sbjct: 27 KLLEAARAGQDDEVRILMANGADVAAKD------------------------KNG----- 57
Query: 158 GASTPLMEAAQEGHLELVRYLLDSGA 183
STPL AA+ GHLE+V+ LL++GA
Sbjct: 58 --STPLHLAARNGHLEVVKLLLEAGA 81
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 33 AACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVN 92
AA G D +L+ GA +V + +PL LAA GH+++ LL+E GA++ +
Sbjct: 31 AARAGQDDEVRILMANGA---DVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQD 87
Query: 93 DEGYTPLMEAAREGHEEMVCVL 114
G T + G+E++ +L
Sbjct: 88 KFGKTAFDISIDNGNEDLAEIL 109
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 12 LAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSF-ESPLTLAA 70
L A G V + +PL LAA GH+++ LL+E GA++ D F ++ ++
Sbjct: 43 LMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV----XAQDKFGKTAFDISI 98
Query: 71 CGGHVDLALLL 81
G+ DLA +L
Sbjct: 99 DNGNEDLAEIL 109
>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative
Modeling And Nmr Data
Length = 136
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 57/127 (44%), Gaps = 4/127 (3%)
Query: 55 VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVL 114
++M S ++ L AA G V+ L+E GA+ +N G P+ + G ++ +L
Sbjct: 5 IHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPI-QVMMMGSAQVAELL 63
Query: 115 LQKGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNGANIEL---GASTPLMEAAQEGH 171
L GA+ N GFLD L + GA +++ P+ A ++GH
Sbjct: 64 LLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGH 123
Query: 172 LELVRYL 178
++ RYL
Sbjct: 124 RDIARYL 130
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 5/105 (4%)
Query: 19 VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLA 78
++M S ++ L AA G V+ L+E GA+ +N F G +A
Sbjct: 5 IHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALN----RFGRRPIQVMMMGSAQVA 60
Query: 79 LLLIERGANIEEVNDEGYT-PLMEAAREGHEEMVCVLLQKGAKIN 122
LL+ GA + T P+ +AAREG + + VL + GA+++
Sbjct: 61 ELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLD 105
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 41 LALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLM 100
+AL L+++GA+ N+ S SP+ AA G +D +L+E GA++ ++ G P+
Sbjct: 58 VALELLKQGAS---PNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIH 114
Query: 101 EAAREGHEEMVCVL 114
A REGH +V L
Sbjct: 115 LAIREGHSSVVSFL 128
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 31/47 (65%)
Query: 77 LALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINA 123
+AL L+++GA+ + G +P+ +AAR G + + VL++ GA +NA
Sbjct: 58 VALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNA 104
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 7/112 (6%)
Query: 6 FESP---LTLAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSF 62
F SP L L G N+ S SP+ AA G +D +L+E GA++ ++ T S
Sbjct: 53 FGSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALD-STGSL 111
Query: 63 ESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVL 114
P+ LA GH + L +++ + G TPL A + G + ++ +L
Sbjct: 112 --PIHLAIREGHSSVVSFLAPE-SDLHHRDASGLTPLELARQRGAQNLMDIL 160
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 12/85 (14%)
Query: 140 GFLDVADFLLKNGANIELGAST---PLMEAAQEGHLELVRYLLDSGAQEMQTKHIDI--- 193
GFLD L+++GA++ ST P+ A +EGH +V +L A E H D
Sbjct: 87 GFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFL----APESDLHHRDASGL 142
Query: 194 --LEFKKRKQEESKAAFCRGSESTP 216
LE +++ ++ +G P
Sbjct: 143 TPLELARQRGAQNLMDILQGHMMIP 167
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 41 LALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLM 100
+AL L+++GA+ N+ S SP+ AA G +D +L+E GA++ ++ G P+
Sbjct: 56 VALELLKQGAS---PNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIH 112
Query: 101 EAAREGHEEMVCVL 114
A REGH +V L
Sbjct: 113 LAIREGHSSVVSFL 126
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 31/47 (65%)
Query: 77 LALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINA 123
+AL L+++GA+ + G +P+ +AAR G + + VL++ GA +NA
Sbjct: 56 VALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNA 102
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 7/112 (6%)
Query: 6 FESP---LTLAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSF 62
F SP L L G N+ S SP+ AA G +D +L+E GA++ ++ T S
Sbjct: 51 FGSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALD-STGSL 109
Query: 63 ESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVL 114
P+ LA GH + L +++ + G TPL A + G + ++ +L
Sbjct: 110 --PIHLAIREGHSSVVSFLAPE-SDLHHRDASGLTPLELARQRGAQNLMDIL 158
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 12/85 (14%)
Query: 140 GFLDVADFLLKNGANIELGAST---PLMEAAQEGHLELVRYLLDSGAQEMQTKHIDI--- 193
GFLD L+++GA++ ST P+ A +EGH +V +L A E H D
Sbjct: 85 GFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFL----APESDLHHRDASGL 140
Query: 194 --LEFKKRKQEESKAAFCRGSESTP 216
LE +++ ++ +G P
Sbjct: 141 TPLELARQRGAQNLMDILQGHMMIP 165
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 52 IEEVNMPTDSFESPLTL---AACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHE 108
++E+N P+ E +T A CG + + LI GAN+ + G+TPL AA
Sbjct: 41 VKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDT 100
Query: 109 EMVCVLLQKGAKINA 123
+ L+Q GA I A
Sbjct: 101 VICMALVQHGAAIFA 115
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 33 AACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANI 88
A CG + + LI GAN VN P +PL AA + + L++ GA I
Sbjct: 61 AICGANYSIVDFLITAGAN---VNSPDSHGWTPLHCAASCNDTVICMALVQHGAAI 113
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 4/105 (3%)
Query: 10 LTLAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLA 69
L L G N+ S SP+ AA G +D +L+E GA+ VN+P + P+ LA
Sbjct: 52 LELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGAD---VNVPDGTGALPIHLA 108
Query: 70 ACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVL 114
GH + L +++ + G TPL A + G +++V +L
Sbjct: 109 VQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDIL 152
Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 37 GHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGY 96
G +AL L+++GA+ N+ S SP+ AA G +D +L+E GA++ + G
Sbjct: 46 GSTAIALELLKQGAS---PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGA 102
Query: 97 TPLMEAAREGHEEMVCVL 114
P+ A +EGH +V L
Sbjct: 103 LPIHLAVQEGHTAVVSFL 120
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 31/50 (62%)
Query: 73 GHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKIN 122
G +AL L+++GA+ + G +P+ +AAR G + + VL++ GA +N
Sbjct: 46 GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVN 95
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 140 GFLDVADFLLKNGANIELGAST---PLMEAAQEGHLELVRYL 178
GFLD L+++GA++ + T P+ A QEGH +V +L
Sbjct: 79 GFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL 120
>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
Length = 156
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 52/131 (39%), Gaps = 4/131 (3%)
Query: 66 LTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHX 125
L AA G V+ L+E GAN N G P+ + G + +LL GA+ N
Sbjct: 16 LATAAARGRVEEVRALLEAGANPNAPNSYGRRPI-QVMMMGSARVAELLLLHGAEPNCAD 74
Query: 126 XXXXXXXXXXXCCGGFLDVADFLLKNGANIEL---GASTPLMEAAQEGHLELVRYLLDSG 182
GFLD L + GA +++ P+ A + GH ++ RYL +
Sbjct: 75 PATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAA 134
Query: 183 AQEMQTKHIDI 193
+ H I
Sbjct: 135 GGTRGSNHARI 145
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 4/105 (3%)
Query: 10 LTLAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLA 69
L L G N+ S SP+ AA G +D +L+E GA+ VN+P + P+ LA
Sbjct: 58 LELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGAD---VNVPDGTGALPIHLA 114
Query: 70 ACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVL 114
GH + L +++ + G TPL A + G +++V +L
Sbjct: 115 VQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDIL 158
Score = 34.7 bits (78), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 37 GHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGY 96
G +AL L+++GA+ N+ S SP+ AA G +D +L+E GA++ + G
Sbjct: 52 GSTAIALELLKQGAS---PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGA 108
Query: 97 TPLMEAAREGHEEMVCVL 114
P+ A +EGH +V L
Sbjct: 109 LPIHLAVQEGHTAVVSFL 126
Score = 31.2 bits (69), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 31/50 (62%)
Query: 73 GHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKIN 122
G +AL L+++GA+ + G +P+ +AAR G + + VL++ GA +N
Sbjct: 52 GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVN 101
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 140 GFLDVADFLLKNGANIELGAST---PLMEAAQEGHLELVRYL 178
GFLD L+++GA++ + T P+ A QEGH +V +L
Sbjct: 85 GFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL 126
>pdb|2ETC|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
pdb|2ETC|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 274
Score = 35.0 bits (79), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 54/107 (50%), Gaps = 16/107 (14%)
Query: 27 ESPLTLAACGGHVDLALLLIE---RGANIEEVNMPTDSFESPLTLAACGGHVDLALL--- 80
E PL+LAAC D+ L+E + A++E + ++ L + A + AL+
Sbjct: 150 ELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHM 209
Query: 81 ---LIERGA------NIEEV-NDEGYTPLMEAAREGHEEMVCVLLQK 117
L++ GA +EE+ N +G TPL AA+EG E+ +LQ+
Sbjct: 210 YDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQR 256
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 34.7 bits (78), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 49/101 (48%), Gaps = 13/101 (12%)
Query: 27 ESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLA-----ACGGHVDLALLL 81
E PL+ AAC G ++ LLIE GA+I + ++ L L AC + LLL
Sbjct: 122 EHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMY---NLLL 178
Query: 82 IERGAN----IEEV-NDEGYTPLMEAAREGHEEMVCVLLQK 117
G + +E V N++G TP A EG+ M L+QK
Sbjct: 179 SYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQK 219
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 14/85 (16%)
Query: 27 ESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSF------------ESPLTLAACGGH 74
++ L +A +V+L L+ RGA++ T S E PL+ AAC G
Sbjct: 76 QTALHIAVINQNVNLVRALLARGASVSA--RATGSVFHYRPHNLIYYGEHPLSFAACVGS 133
Query: 75 VDLALLLIERGANIEEVNDEGYTPL 99
++ LLIE GA+I + G T L
Sbjct: 134 EEIVRLLIEHGADIRAQDSLGNTVL 158
>pdb|2ETA|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETA|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETB|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 256
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 54/107 (50%), Gaps = 16/107 (14%)
Query: 27 ESPLTLAACGGHVDLALLLIE---RGANIEEVNMPTDSFESPLTLAACGGHVDLALL--- 80
E PL+LAAC D+ L+E + A++E + ++ L + A + AL+
Sbjct: 137 ELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHM 196
Query: 81 ---LIERGA------NIEEV-NDEGYTPLMEAAREGHEEMVCVLLQK 117
L++ GA +EE+ N +G TPL AA+EG E+ +LQ+
Sbjct: 197 YDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQR 243
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%)
Query: 63 ESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLL 115
++ L LA G VD+ L+ A++ +D+G T LM A GH+E+ +LL
Sbjct: 184 QTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLL 236
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Query: 140 GFLDVADFLLKNGANIELG---ASTPLMEAAQEGHLELVRYLL 179
GFLD LL+N A++ + + PL AA+EGHL +V +L+
Sbjct: 81 GFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV 123
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 37 GHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGY 96
G+ ++A L+ RGAN + + + + + AA G +D L+E A++ ++EG
Sbjct: 48 GNPEIARRLLLRGANPD---LKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGN 104
Query: 97 TPLMEAAREGHEEMVCVLLQKGAKINAH 124
PL AA+EGH +V L++ A H
Sbjct: 105 LPLHLAAKEGHLRVVEFLVKHTASNVGH 132
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 37 GHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGY 96
G+ ++A L+ RGAN + + + + + AA G +D L+E A++ ++EG
Sbjct: 48 GNPEIARRLLLRGANPD---LKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGN 104
Query: 97 TPLMEAAREGHEEMVCVLLQKGAKINAH 124
PL AA+EGH +V L++ A H
Sbjct: 105 LPLHLAAKEGHLRVVEFLVKHTASNVGH 132
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 140 GFLDVADFLLKNGANIELG---ASTPLMEAAQEGHLELVRYLL 179
GFLD LL+ A++ + + PL AA+EGHL +V +L+
Sbjct: 81 GFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV 123
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 31.2 bits (69), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 37 GHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGY 96
G+ ++A L+ RGAN + + + + + AA G +D L+E A++ ++EG
Sbjct: 48 GNPEIARRLLLRGANPD---LKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGN 104
Query: 97 TPLMEAAREGHEEMVCVLLQKGAKINAH 124
PL AA+EGH +V L++ A H
Sbjct: 105 LPLHLAAKEGHLRVVEFLVKHTASNVGH 132
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 31/107 (28%)
Query: 73 GHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXX 132
G+ ++A L+ RGAN + + G+ + +AAR G + + LL+ A +N
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVN---------- 97
Query: 133 XXXXCCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLELVRYLL 179
+ N N+ PL AA+EGHL +V +L+
Sbjct: 98 ---------------IEDNEGNL------PLHLAAKEGHLRVVEFLV 123
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 30 LTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIE 89
L LA+ G++ + LL+ GA++ P + + L LA + DL LL++ GA++
Sbjct: 121 LHLASIHGYLGIVELLVSLGADVN-AQEPCNG-RTALHLAVDLQNPDLVSLLLKCGADVN 178
Query: 90 EVNDEGYTP 98
V +GY+P
Sbjct: 179 RVTYQGYSP 187
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 54/138 (39%), Gaps = 9/138 (6%)
Query: 55 VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVL 114
+N + ++PL LA ++A L+ G + E + G TPL A +G V VL
Sbjct: 38 LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVL 97
Query: 115 LQKGAKINAHXXXXXXXXXXXXC-----CGGFLDVADFLLKNGANIE----LGASTPLME 165
Q + H C G+L + + L+ GA++ T L
Sbjct: 98 TQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHL 157
Query: 166 AAQEGHLELVRYLLDSGA 183
A + +LV LL GA
Sbjct: 158 AVDLQNPDLVSLLLKCGA 175
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 37 GHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGY 96
G+ ++A L+ RGAN + + + + + AA G +D L+E A++ ++EG
Sbjct: 48 GNPEIARRLLLRGANPD---LKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGN 104
Query: 97 TPLMEAAREGHEEMVCVLLQKGAKINAH 124
PL AA+EGH +V L++ A H
Sbjct: 105 LPLHLAAKEGHLRVVEFLVKHTASNVGH 132
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 140 GFLDVADFLLKNGANIELG---ASTPLMEAAQEGHLELVRYLL 179
GFLD LL+ A++ + + PL AA+EGHL +V +L+
Sbjct: 81 GFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV 123
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 37 GHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGY 96
G+ ++A L+ RGAN + + + + + AA G +D L+E A++ ++EG
Sbjct: 48 GNPEIARRLLLRGANPD---LKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGN 104
Query: 97 TPLMEAAREGHEEMVCVLLQKGAKINAH 124
PL AA+EGH +V L++ A H
Sbjct: 105 LPLHLAAKEGHLRVVEFLVKHTASNVGH 132
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 140 GFLDVADFLLKNGANIELG---ASTPLMEAAQEGHLELVRYLL 179
GFLD LL+ A++ + + PL AA+EGHL +V +L+
Sbjct: 81 GFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV 123
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 30 LTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIE 89
L LA+ G++ + LL+ GA++ P + + L LA + DL LL++ GA++
Sbjct: 118 LHLASIHGYLGIVELLVSLGADVN-AQEPCNG-RTALHLAVDLQNPDLVSLLLKCGADVN 175
Query: 90 EVNDEGYTP 98
V +GY+P
Sbjct: 176 RVTYQGYSP 184
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 54/138 (39%), Gaps = 9/138 (6%)
Query: 55 VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVL 114
+N + ++PL LA ++A L+ G + E + G TPL A +G V VL
Sbjct: 35 LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVL 94
Query: 115 LQKGAKINAHXXXXXXXXXXXXC-----CGGFLDVADFLLKNGANIE----LGASTPLME 165
Q + H C G+L + + L+ GA++ T L
Sbjct: 95 TQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHL 154
Query: 166 AAQEGHLELVRYLLDSGA 183
A + +LV LL GA
Sbjct: 155 AVDLQNPDLVSLLLKCGA 172
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 28 SPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGAN 87
+ L A GGH D+ L + NIE +N ++ L AA G+ D+ LL+ +GA
Sbjct: 108 TALYWACHGGHKDIVEXLFTQ-PNIE-LNQQNKLGDTALHAAAWKGYADIVQLLLAKGAR 165
Query: 88 IEEVNDE 94
+ N E
Sbjct: 166 TDLRNIE 172
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 39/102 (38%), Gaps = 3/102 (2%)
Query: 87 NIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVAD 146
+E N +G+TPL A EMV +L GA +N V +
Sbjct: 150 QLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLE 209
Query: 147 FLLKNGANIE---LGASTPLMEAAQEGHLELVRYLLDSGAQE 185
LLK GA+ G TPL A + L R L GA E
Sbjct: 210 LLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPE 251
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 38/94 (40%)
Query: 23 TDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLI 82
T+ ++ L LA H L+ A E +++ D ++ L LAA G L
Sbjct: 6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65
Query: 83 ERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQ 116
GA + G+T L A R CVLLQ
Sbjct: 66 AAGAGVLVAERGGHTALHLACRVRAHTCACVLLQ 99
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 39/102 (38%), Gaps = 3/102 (2%)
Query: 87 NIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHXXXXXXXXXXXXCCGGFLDVAD 146
+E N +G+TPL A EMV +L GA +N V +
Sbjct: 150 QLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLE 209
Query: 147 FLLKNGANIE---LGASTPLMEAAQEGHLELVRYLLDSGAQE 185
LLK GA+ G TPL A + L R L GA E
Sbjct: 210 LLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPE 251
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 38/94 (40%)
Query: 23 TDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLI 82
T+ ++ L LA H L+ A E +++ D ++ L LAA G L
Sbjct: 6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65
Query: 83 ERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQ 116
GA + G+T L A R CVLLQ
Sbjct: 66 AAGAGVLVAERGGHTALHLACRVRAHTCACVLLQ 99
>pdb|2F37|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
pdb|2F37|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
Length = 251
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 16/107 (14%)
Query: 27 ESPLTLAACGGHVDLALLLIE---RGANIEEVNMPTDSFESPLTLAACGGHVDLALL--- 80
E PL+LAAC D+ L+E + A+++ + ++ L + ++AL+
Sbjct: 142 ELPLSLAACTKQWDVVSYLLENPHQPASLQATDSQGNTVLHALVXISDNSAENIALVTSX 201
Query: 81 ---LIERGA------NIEEV-NDEGYTPLMEAAREGHEEMVCVLLQK 117
L++ GA +E++ N + TPL AA+EG E+ +LQ+
Sbjct: 202 YDGLLQAGARLCPTVQLEDIRNLQDLTPLKLAAKEGKIEIFRHILQR 248
>pdb|1DC2|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 20
Structures
pdb|1A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 18
Structures
pdb|2A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a,
Restrained Minimized Mean Structure
Length = 156
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 5/94 (5%)
Query: 30 LTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIE 89
L AA G V+ L+E GA N P P+ + G +A LL+ GA
Sbjct: 16 LATAAARGRVEEVRALLEAGA---LPNAPNSYGRRPIQVMMMGS-ARVAELLLLHGAEPN 71
Query: 90 EVNDEGYT-PLMEAAREGHEEMVCVLLQKGAKIN 122
+ T P+ +AAREG + + VL + GA+++
Sbjct: 72 CADPATLTRPVHDAAREGFLDTLVVLHRAGARLD 105
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.130 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,189,373
Number of Sequences: 62578
Number of extensions: 307760
Number of successful extensions: 1536
Number of sequences better than 100.0: 110
Number of HSP's better than 100.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 619
Number of HSP's gapped (non-prelim): 452
length of query: 352
length of database: 14,973,337
effective HSP length: 100
effective length of query: 252
effective length of database: 8,715,537
effective search space: 2196315324
effective search space used: 2196315324
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)