RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5490
(352 letters)
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein;
2.70A {Homo sapiens} SCOP: d.211.1.1
Length = 437
Score = 185 bits (472), Expect = 4e-55
Identities = 63/192 (32%), Positives = 88/192 (45%), Gaps = 20/192 (10%)
Query: 8 SPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEE 54
+PL +AA GH T +PL +AA G V +A LL+ER A+
Sbjct: 115 TPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHP-- 172
Query: 55 VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVL 114
N + +PL +A ++D+ LL+ RG + GYTPL AA++ E+ L
Sbjct: 173 -NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSL 231
Query: 115 LQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGAS---TPLMEAAQEGH 171
LQ G NA + + T L LA G ++ LL AN LG TPL AQEGH
Sbjct: 232 LQYGGSANAESVQ-GVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGH 290
Query: 172 LELVRYLLDSGA 183
+ + L+ G
Sbjct: 291 VPVADVLIKHGV 302
Score = 177 bits (451), Expect = 5e-52
Identities = 62/193 (32%), Positives = 91/193 (47%), Gaps = 20/193 (10%)
Query: 7 ESPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIE 53
+PL +A+ GH N+ E+PL +AA GH ++A L++ A +
Sbjct: 15 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN 74
Query: 54 EVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCV 113
++PL AA GH ++ LL+E AN G+TPL AAREGH E V
Sbjct: 75 AKA---KDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLA 131
Query: 114 LLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGA---STPLMEAAQEG 170
LL+K A T++ T L +A G + VA+ LL+ A+ TPL A
Sbjct: 132 LLEKEASQACMTKK-GFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHN 190
Query: 171 HLELVRYLLDSGA 183
+L++V+ LL G
Sbjct: 191 NLDIVKLLLPRGG 203
Score = 173 bits (442), Expect = 9e-51
Identities = 62/198 (31%), Positives = 92/198 (46%), Gaps = 20/198 (10%)
Query: 2 PTDSFESPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIER 48
E+PL +AA GH VN ++PL AA GH ++ LL+E
Sbjct: 43 SNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLEN 102
Query: 49 GANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHE 108
AN + +PL +AA GHV+ L L+E+ A+ + +G+TPL AA+ G
Sbjct: 103 NANPNLAT---TAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKV 159
Query: 109 EMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGAS---TPLME 165
+ +LL++ A NA + T L +A LD+ LL G + A TPL
Sbjct: 160 RVAELLLERDAHPNAAGKN-GLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHI 218
Query: 166 AAQEGHLELVRYLLDSGA 183
AA++ +E+ R LL G
Sbjct: 219 AAKQNQVEVARSLLQYGG 236
Score = 172 bits (439), Expect = 2e-50
Identities = 53/171 (30%), Positives = 82/171 (47%), Gaps = 7/171 (4%)
Query: 16 GGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHV 75
G +S +PL +A+ GH+ + L++RGA+ N+ E+PL +AA GH
Sbjct: 4 GISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGAS---PNVSNVKVETPLHMAARAGHT 60
Query: 76 DLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTL 135
++A L++ A + + TPL AAR GH MV +LL+ A N T T L +
Sbjct: 61 EVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTA-GHTPLHI 119
Query: 136 ACCGGFLDVADFLLKNGANIELGAS---TPLMEAAQEGHLELVRYLLDSGA 183
A G ++ LL+ A+ TPL AA+ G + + LL+ A
Sbjct: 120 AAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDA 170
Score = 171 bits (435), Expect = 1e-49
Identities = 60/194 (30%), Positives = 91/194 (46%), Gaps = 20/194 (10%)
Query: 7 ESPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIE 53
+PL +AA N + +PL LAA GH ++ LL+ + AN
Sbjct: 213 YTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG- 271
Query: 54 EVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCV 113
N+ S +PL L A GHV +A +LI+ G ++ GYTPL A+ G+ ++V
Sbjct: 272 --NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKF 329
Query: 114 LLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGA---STPLMEAAQEG 170
LLQ A +NA T+ + L A G D+ LLKNGA+ + +TPL A + G
Sbjct: 330 LLQHQADVNAKTKL-GYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLG 388
Query: 171 HLELVRYLLDSGAQ 184
++ + L +
Sbjct: 389 YISVTDVLKVVTDE 402
Score = 149 bits (379), Expect = 1e-41
Identities = 53/192 (27%), Positives = 88/192 (45%), Gaps = 20/192 (10%)
Query: 7 ESPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIE 53
+PL LAA GH N+ S +PL L A GHV +A +LI+ G ++
Sbjct: 246 VTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVD 305
Query: 54 EVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCV 113
+PL +A+ G++ L L++ A++ GY+PL +AA++GH ++V +
Sbjct: 306 ATT---RMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTL 362
Query: 114 LLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLE 173
LL+ GA N + + T L +A G++ V D L + + + + E
Sbjct: 363 LLKNGASPNEVSSD-GTTPLAIAKRLGYISVTDVLKVVTDE---TSFVLVSDKHRMSFPE 418
Query: 174 LVRYLLDSGAQE 185
V +LD E
Sbjct: 419 TVDEILDVSEDE 430
Score = 119 bits (302), Expect = 1e-30
Identities = 38/103 (36%), Positives = 54/103 (52%), Gaps = 4/103 (3%)
Query: 84 RGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLD 143
G + + G TPL A+ GH +V LLQ+GA N + ET L +A G +
Sbjct: 3 PGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVK-VETPLHMAARAGHTE 61
Query: 144 VADFLLKNGANIELGA---STPLMEAAQEGHLELVRYLLDSGA 183
VA +LL+N A + A TPL AA+ GH +V+ LL++ A
Sbjct: 62 VAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNA 104
Score = 70.6 bits (174), Expect = 1e-13
Identities = 28/133 (21%), Positives = 49/133 (36%), Gaps = 28/133 (21%)
Query: 7 ESPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIE 53
+PL +A+ G+ VN T SPL AA GH D+ LL++ GA+
Sbjct: 312 YTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASP- 370
Query: 54 EVNMPTDSFESPLTLAACGGHVDLALLL---IERGANIEEVNDEGYTPLMEAAREGHEEM 110
N + +PL +A G++ + +L + + + + + E
Sbjct: 371 --NEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFP---------ET 419
Query: 111 VCVLLQKGAKINA 123
V +L
Sbjct: 420 VDEILDVSEDEGE 432
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription
regulation, autoantibody; 2.58A {Homo sapiens}
Length = 261
Score = 172 bits (438), Expect = 6e-52
Identities = 61/192 (31%), Positives = 87/192 (45%), Gaps = 20/192 (10%)
Query: 7 ESPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIE 53
SP+ AA GH VN+ T SPL A GGH+ +L++ GA +
Sbjct: 4 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN 63
Query: 54 EVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCV 113
V + +PL A G D LL++ GA+++ +D +P+ EAAR GH E V
Sbjct: 64 GVT---ADWHTPLFNACVSGSWDCVNLLLQHGASVQPESD-LASPIHEAARRGHVECVNS 119
Query: 114 LLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGAS--TPLMEAAQEGH 171
L+ G I+ T L LAC LL++GA++ G +PL A+
Sbjct: 120 LIAYGGNIDHKISH-LGTPLYLACENQQRACVKKLLESGADVNQGKGQDSPLHAVARTAS 178
Query: 172 LELVRYLLDSGA 183
EL L+D GA
Sbjct: 179 EELACLLMDFGA 190
Score = 166 bits (422), Expect = 1e-49
Identities = 50/193 (25%), Positives = 74/193 (38%), Gaps = 24/193 (12%)
Query: 7 ESPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIE 53
SPL A GGH VN T + +PL A G D LL++ GA+++
Sbjct: 37 VSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ 96
Query: 54 EVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCV 113
SP+ AA GHV+ LI G NI+ TPL A V
Sbjct: 97 P----ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKK 152
Query: 114 LLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGAS---TPLMEAAQEG 170
LL+ GA +N + ++ L ++A L+ GA+ + + P+ E
Sbjct: 153 LLESGADVNQGKGQ--DSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPPES 210
Query: 171 HLELVRYLLDSGA 183
L + L+
Sbjct: 211 P--LAQLFLEREG 221
Score = 154 bits (393), Expect = 3e-45
Identities = 43/192 (22%), Positives = 67/192 (34%), Gaps = 22/192 (11%)
Query: 9 PLTLAACGGHVNM------------PTDSFESPLTLAACGGHVDLALLLIERGANIEEVN 56
PL A G + P SP+ AA GHV+ LI G NI+
Sbjct: 72 PLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKI 131
Query: 57 MPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQ 116
+PL LA L+E GA++ + +PL AR EE+ C+L+
Sbjct: 132 ---SHLGTPLYLACENQQRACVKKLLESGADVNQGKG-QDSPLHAVARTASEELACLLMD 187
Query: 117 KGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGA---STPLMEAAQEGHLE 173
GA A E + + L +A L+ L + H +
Sbjct: 188 FGADTQAKNAEGK-RPVELVPPES--PLAQLFLEREGPPSLMQLCRLRIRKCFGIQQHHK 244
Query: 174 LVRYLLDSGAQE 185
+ + +L ++
Sbjct: 245 ITKLVLPEDLKQ 256
Score = 107 bits (270), Expect = 2e-27
Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Query: 95 GYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGAN 154
++P+ EAA GH+ + L+ +G +N T + + L AC GG L LLK+GA
Sbjct: 3 DWSPMHEAAIHGHQLSLRNLISQGWAVNIITAD-HVSPLHEACLGGHLSCVKILLKHGAQ 61
Query: 155 IELGA---STPLMEAAQEGHLELVRYLLDSGA 183
+ TPL A G + V LL GA
Sbjct: 62 VNGVTADWHTPLFNACVSGSWDCVNLLLQHGA 93
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and
SOCS box-containing...; ASB9, ANK repeat, L-shaped,
structural protein; 2.20A {Homo sapiens}
Length = 285
Score = 171 bits (437), Expect = 1e-51
Identities = 54/186 (29%), Positives = 80/186 (43%), Gaps = 14/186 (7%)
Query: 8 SPLTLAACGGH------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDS 61
P G + S SP+ AA GH LI +G VN+ T
Sbjct: 35 KPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWA---VNIITAD 91
Query: 62 FESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKI 121
SPL A GGH+ +L++ GA + V + +TPL A G + V +LLQ GA +
Sbjct: 92 HVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASV 151
Query: 122 NAHTEETQETALTLACCGGFLDVADFLLKNGANIELGAS---TPLMEAAQEGHLELVRYL 178
++ + + A G ++ + L+ G NI+ S TPL A + V+ L
Sbjct: 152 QPESDL--ASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKL 209
Query: 179 LDSGAQ 184
L+SGA
Sbjct: 210 LESGAD 215
Score = 163 bits (415), Expect = 3e-48
Identities = 53/193 (27%), Positives = 76/193 (39%), Gaps = 23/193 (11%)
Query: 7 ESPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIE 53
SPL A GGH VN T + +PL A G D LL++ GA+++
Sbjct: 93 VSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ 152
Query: 54 EVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCV 113
SP+ AA GHV+ LI G NI+ TPL A V
Sbjct: 153 P----ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKK 208
Query: 114 LLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGA---STPLMEAAQEG 170
LL+ GA +N + Q++ L ++A L+ GA+ + P+ E
Sbjct: 209 LLESGADVNQ--GKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPES 266
Query: 171 HLELVRYLLDSGA 183
L + +L GA
Sbjct: 267 PLAQL-FLEREGA 278
Score = 148 bits (375), Expect = 2e-42
Identities = 47/187 (25%), Positives = 82/187 (43%), Gaps = 21/187 (11%)
Query: 12 LAACGGHVNM------------PTDSFESPLTLAACGGHVDLA-LLLIERGANIEEVNMP 58
+ + H + D + + + G D + L+ + V+
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDW 60
Query: 59 TDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKG 118
+ P+ AA GH LI +G + + + +PL EA GH V +LL+ G
Sbjct: 61 S-----PMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHG 115
Query: 119 AKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGA--STPLMEAAQEGHLELVR 176
A++N T + T L AC G D + LL++GA+++ + ++P+ EAA+ GH+E V
Sbjct: 116 AQVNGVTADWH-TPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVN 174
Query: 177 YLLDSGA 183
L+ G
Sbjct: 175 SLIAYGG 181
Score = 126 bits (319), Expect = 3e-34
Identities = 42/160 (26%), Positives = 60/160 (37%), Gaps = 18/160 (11%)
Query: 9 PLTLAACGGHVNM------------PTDSFESPLTLAACGGHVDLALLLIERGANIEEVN 56
PL A G + P SP+ AA GHV+ LI G NI+
Sbjct: 128 PLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKI 187
Query: 57 MPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQ 116
+PL LA L+E GA++ + +PL R EE+ C+L+
Sbjct: 188 ---SHLGTPLYLACENQQRACVKKLLESGADVNQGKG-QDSPLHAVVRTASEELACLLMD 243
Query: 117 KGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIE 156
GA A E + + L L FL + GA++
Sbjct: 244 FGADTQAKNAE-GKRPVELVPPESPLAQL-FLEREGASLP 281
Score = 116 bits (294), Expect = 1e-30
Identities = 32/135 (23%), Positives = 51/135 (37%), Gaps = 18/135 (13%)
Query: 2 PTDSFESPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIER 48
P SP+ AA GH ++ +PL LA L+E
Sbjct: 153 PESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLES 212
Query: 49 GANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHE 108
GA++ + +SPL +LA LL++ GA+ + N EG P+ E
Sbjct: 213 GADVNQ----GKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPL 268
Query: 109 EMVCVLLQKGAKINA 123
+ L ++GA +
Sbjct: 269 AQLF-LEREGASLPK 282
Score = 101 bits (254), Expect = 6e-25
Identities = 27/125 (21%), Positives = 48/125 (38%), Gaps = 16/125 (12%)
Query: 68 LAACGGHVDLALLLIERGANIEEVNDE-----GYTPLMEAAREGHEEMVCVLLQKGAKIN 122
+ + H + L+ RG+++ ++ + G P G LL +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIR-----LLSNPLMGD 55
Query: 123 AHTEETQETALTLACCGGFLDVADFLLKNGANIELGAS---TPLMEAAQEGHLELVRYLL 179
A ++ + + A G L+ G + + + +PL EA GHL V+ LL
Sbjct: 56 AVSD---WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILL 112
Query: 180 DSGAQ 184
GAQ
Sbjct: 113 KHGAQ 117
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium,
SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo
sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Length = 167
Score = 166 bits (423), Expect = 5e-51
Identities = 31/158 (19%), Positives = 62/158 (39%), Gaps = 7/158 (4%)
Query: 29 PLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANI 88
+ A G + IE+ I + + +PL AA G + + L++ GA+
Sbjct: 6 SVHQLAAQGEMLYLATRIEQENVINHTD---EEGFTPLMWAAAHGQIAVVEFLLQNGADP 62
Query: 89 EEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFL 148
+ + + L A +G+ ++V +LL G +N + T L A G + L
Sbjct: 63 QLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWN-GGTPLLYAVHGNHVKCVKML 121
Query: 149 LKNGANIELGA---STPLMEAAQEGHLELVRYLLDSGA 183
L++GA+ + + A G+ + + +
Sbjct: 122 LESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLL 159
Score = 139 bits (354), Expect = 9e-41
Identities = 37/161 (22%), Positives = 68/161 (42%), Gaps = 17/161 (10%)
Query: 9 PLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEV 55
+ A G +N + +PL AA G + + L++ GA+ + +
Sbjct: 6 SVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL 65
Query: 56 NMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLL 115
ES L+LA G+ D+ +L++ G ++ E + G TPL+ A H + V +LL
Sbjct: 66 G---KGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLL 122
Query: 116 QKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIE 156
+ GA T+ ++ LA G+ V + + +
Sbjct: 123 ESGADPTIETDS-GYNSMDLAVALGYRSVQQVIESHLLKLL 162
Score = 118 bits (298), Expect = 2e-32
Identities = 33/132 (25%), Positives = 55/132 (41%), Gaps = 16/132 (12%)
Query: 9 PLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEV 55
PL AA G + ES L+LA G+ D+ +L++ G ++ E
Sbjct: 39 PLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEY 98
Query: 56 NMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLL 115
+ + +PL A G HV +L+E GA+ D GY + A G+ + V+
Sbjct: 99 D---WNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIE 155
Query: 116 QKGAKINAHTEE 127
K+ + +E
Sbjct: 156 SHLLKLLQNIKE 167
Score = 106 bits (267), Expect = 5e-28
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 4/92 (4%)
Query: 95 GYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGAN 154
+ + A +G + +++ IN T+E T L A G + V +FLL+NGA+
Sbjct: 3 NSLSVHQLAAQGEMLYLATRIEQENVINH-TDEEGFTPLMWAAAHGQIAVVEFLLQNGAD 61
Query: 155 IELGA---STPLMEAAQEGHLELVRYLLDSGA 183
+L + L A +G+ ++V+ LLD G
Sbjct: 62 PQLLGKGRESALSLACSKGYTDIVKMLLDCGV 93
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Length = 285
Score = 169 bits (430), Expect = 2e-50
Identities = 30/171 (17%), Positives = 62/171 (36%), Gaps = 7/171 (4%)
Query: 16 GGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHV 75
S A +V L L+ GA + PL AA
Sbjct: 21 SKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLENEF-----PLHQAATLEDT 75
Query: 76 DLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTL 135
+ +L+ G + + +D+G T L A G+ + V + ++K ++ + + +T+
Sbjct: 76 KIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYH 135
Query: 136 ACCGGFLDVADFLLKNGANIELGA--STPLMEAAQEGHLELVRYLLDSGAQ 184
A + + + L + A + + + GH++++ LLD
Sbjct: 136 AVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTS 186
Score = 165 bits (420), Expect = 5e-49
Identities = 26/190 (13%), Positives = 60/190 (31%), Gaps = 20/190 (10%)
Query: 7 ESPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIE 53
E PL AA + D + L A G++ L +++ +
Sbjct: 63 EFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLM 122
Query: 54 EVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCV 113
+++ A V + + + ++ + + + GH +M+ +
Sbjct: 123 FYG--KTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAI-LLSCIHITIKNGHVDMMIL 179
Query: 114 LLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLE 173
LL N + + LA +++ L K NI + +E E
Sbjct: 180 LLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIY----SANLENVLLDDAE 235
Query: 174 LVRYLLDSGA 183
+ + +++
Sbjct: 236 IAKMIIEKHV 245
Score = 125 bits (316), Expect = 8e-34
Identities = 23/185 (12%), Positives = 56/185 (30%), Gaps = 28/185 (15%)
Query: 7 ESPLTLAACGGH-------------VNMPT-DSFESPLTLAACGGHVDLALLLIERGANI 52
+ L A G+ + +++ A V + + +
Sbjct: 96 NTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST 155
Query: 53 EEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTP-LMEAAREGHEEMV 111
++ S + + GHVD+ +LL++ + N + P + A EM+
Sbjct: 156 FDLA----ILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEML 211
Query: 112 CVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGA-STPLMEAAQEG 170
L + I +A ++A +++ + + + L
Sbjct: 212 QALFKYDINIY--------SANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDIVKNNK 263
Query: 171 HLELV 175
E++
Sbjct: 264 LDEII 268
Score = 116 bits (292), Expect = 2e-30
Identities = 22/118 (18%), Positives = 39/118 (33%), Gaps = 8/118 (6%)
Query: 69 AACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEET 128
L L + + + G++ A + + +VC LL GA N
Sbjct: 7 INTWKSKQLKSFLS--SKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNL---LE 61
Query: 129 QETALTLACCGGFLDVADFLLKNGANIELG---ASTPLMEAAQEGHLELVRYLLDSGA 183
E L A + LL +G + +T L A G+++ V+ +
Sbjct: 62 NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNW 119
Score = 98.0 bits (245), Expect = 1e-23
Identities = 18/142 (12%), Positives = 45/142 (31%), Gaps = 22/142 (15%)
Query: 4 DSFESPLTLAACGGH------------VNMPTDSFESPLTLAACGGHVDLALLLIERGAN 51
+++ A S + + GHVD+ +LL++ +
Sbjct: 127 TGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTS 186
Query: 52 IEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMV 111
N + F + LA +++ L + NI + +E E+
Sbjct: 187 TNTNN--SLLFIPDIKLAIDNKDIEMLQALFKYDINIY-------SANLENVLLDDAEIA 237
Query: 112 CVLLQKGAKINAHTEETQETAL 133
++++K + + + +
Sbjct: 238 KMIIEKHVEYKSDSYTKD-LDI 258
Score = 74.5 bits (184), Expect = 2e-15
Identities = 16/135 (11%), Positives = 37/135 (27%), Gaps = 27/135 (20%)
Query: 7 ESPLTLAACGGH-------------VNMPTDSFESP-LTLAACGGHVDLALLLIERGANI 52
S + + GH N P + LA +++ L + NI
Sbjct: 162 LSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINI 221
Query: 53 EEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVC 112
S ++A ++IE+ + + + +E++
Sbjct: 222 Y----------SANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDI--VKNNKLDEIIS 269
Query: 113 V-LLQKGAKINAHTE 126
+ +N +
Sbjct: 270 KNKELRLMYVNCVKK 284
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC,
rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens}
PDB: 3uxg_A
Length = 172
Score = 164 bits (419), Expect = 2e-50
Identities = 38/158 (24%), Positives = 70/158 (44%), Gaps = 6/158 (3%)
Query: 29 PLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANI 88
+ A G +D + +G N VN P + +PL A+ G ++ L+E GA+
Sbjct: 5 SIHQLAAQGELDQLKEHLRKGDN--LVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP 62
Query: 89 EEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFL 148
+ E + L A+ G+ ++V +LL++ IN + T L A G + + L
Sbjct: 63 HILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGG-TPLLYAVRGNHVKCVEAL 121
Query: 149 LKNGANIELGA---STPLMEAAQEGHLELVRYLLDSGA 183
L GA++ A TP+ A G+ ++ + + +
Sbjct: 122 LARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHIL 159
Score = 146 bits (371), Expect = 3e-43
Identities = 43/162 (26%), Positives = 69/162 (42%), Gaps = 18/162 (11%)
Query: 9 PLTLAACGGH--------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEE 54
+ A G VN P + +PL A+ G ++ L+E GA+
Sbjct: 5 SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI 64
Query: 55 VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVL 114
+ ES L+LA+ GG+ D+ LL+ER +I + G TPL+ A R H + V L
Sbjct: 65 LA---KERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEAL 121
Query: 115 LQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIE 156
L +GA + + T + LA G+ V + + +
Sbjct: 122 LARGADLTTEADS-GYTPMDLAVALGYRKVQQVIENHILKLF 162
Score = 120 bits (303), Expect = 3e-33
Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 16/128 (12%)
Query: 9 PLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEV 55
PL A+ G ++ ES L+LA+ GG+ D+ LL+ER +I
Sbjct: 39 PLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIY 98
Query: 56 NMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLL 115
+ + +PL A G HV L+ RGA++ D GYTP+ A G+ ++ V+
Sbjct: 99 D---WNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIE 155
Query: 116 QKGAKINA 123
K+
Sbjct: 156 NHILKLFQ 163
Score = 103 bits (259), Expect = 1e-26
Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 5/93 (5%)
Query: 95 GYTPLMEAAREGHEEMVCVLLQKGA-KINAHTEETQETALTLACCGGFLDVADFLLKNGA 153
+ + A +G + + L+KG +N +E T L A G ++ FLL+ GA
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNK-PDERGFTPLIWASAFGEIETVRFLLEWGA 60
Query: 154 NIELGA---STPLMEAAQEGHLELVRYLLDSGA 183
+ + A + L A+ G+ ++V LL+
Sbjct: 61 DPHILAKERESALSLASTGGYTDIVGLLLERDV 93
Score = 82.1 bits (204), Expect = 5e-19
Identities = 26/105 (24%), Positives = 44/105 (41%), Gaps = 16/105 (15%)
Query: 7 ESPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIE 53
ES L+LA+ GG+ +N+ + +PL A G HV L+ RGA++
Sbjct: 70 ESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLT 129
Query: 54 EVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTP 98
DS +P+ LA G+ + ++ + + N P
Sbjct: 130 TEA---DSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP 171
Score = 45.5 bits (109), Expect = 4e-06
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 158 GASTPLMEAAQEGHLELVRYLLDSGAQE 185
G S + + A +G L+ ++ L G
Sbjct: 1 GDSLSIHQLAAQGELDQLKEHLRKGDNL 28
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats,
methyllyine binding, huntingti interacting protein 14,
acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo
sapiens}
Length = 240
Score = 164 bits (417), Expect = 4e-49
Identities = 45/193 (23%), Positives = 79/193 (40%), Gaps = 21/193 (10%)
Query: 9 PLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEV 55
+ A G V P + L AA +DL I +GA ++++
Sbjct: 12 DIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQL 71
Query: 56 NMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLL 115
D +PL A GH+ + + L++ GA+ ++ EG + + AA+ GH +V L+
Sbjct: 72 G--GDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLI 129
Query: 116 QKGAKINAHTEETQETALTLACCGGF-LDVADFLLKNGANIE----LGASTPLMEAAQEG 170
KG ++ + T L A +D LL ++ +T L A G
Sbjct: 130 AKGQDVDMMDQN-GMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAG 188
Query: 171 HLELVRYLLDSGA 183
+ ++ LL++GA
Sbjct: 189 NTTVISLLLEAGA 201
Score = 161 bits (409), Expect = 6e-48
Identities = 48/193 (24%), Positives = 82/193 (42%), Gaps = 21/193 (10%)
Query: 9 PLTLAACGGH-------------VNMPT-DSFESPLTLAACGGHVDLALLLIERGANIEE 54
L AA V+ D +PL A GH+ + + L++ GA+
Sbjct: 45 LLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSL 104
Query: 55 VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHE-EMVCV 113
++ S + LAA GH + LI +G +++ ++ G TPLM AA H + +
Sbjct: 105 ID---GEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRL 161
Query: 114 LLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGA---STPLMEAAQEG 170
LL +N + + TAL A G V LL+ GAN++ + L A Q
Sbjct: 162 LLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRK 221
Query: 171 HLELVRYLLDSGA 183
++ ++ +L ++
Sbjct: 222 NVWMINHLQEARQ 234
Score = 160 bits (407), Expect = 1e-47
Identities = 44/171 (25%), Positives = 74/171 (43%), Gaps = 9/171 (5%)
Query: 18 HVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDL 77
H+ D + A G + L+E G ++ + + + L AA +DL
Sbjct: 1 HMTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPD---KENVTLLHWAAINNRIDL 57
Query: 78 ALLLIERGANIEEV-NDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLA 136
I +GA ++++ D TPL A R+GH MV L++ GA + E + + LA
Sbjct: 58 VKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGC-SCIHLA 116
Query: 137 CCGGFLDVADFLLKNGANIELGA---STPLMEAAQEGH-LELVRYLLDSGA 183
G + +L+ G ++++ TPLM AA H ++ R LL
Sbjct: 117 AQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNV 167
Score = 123 bits (311), Expect = 1e-33
Identities = 38/163 (23%), Positives = 66/163 (40%), Gaps = 19/163 (11%)
Query: 9 PLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEV 55
PL A GH ++ S + LAA GH + LI +G +++ +
Sbjct: 79 PLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMM 138
Query: 56 NMPTDSFESPLTLAACGGH-VDLALLLIERGANIEEV-NDEGYTPLMEAAREGHEEMVCV 113
+ + +PL AA H VD LL+ ++ T L A G+ ++ +
Sbjct: 139 D---QNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISL 195
Query: 114 LLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIE 156
LL+ GA ++A + E+AL LA + + + L +
Sbjct: 196 LLEAGANVDAQNIK-GESALDLAKQRKNVWMINHLQEARQAKG 237
Score = 103 bits (260), Expect = 3e-26
Identities = 32/130 (24%), Positives = 52/130 (40%), Gaps = 16/130 (12%)
Query: 8 SPLTLAACGGH-------------VNMPTDSFESPLTLAACGGH-VDLALLLIERGANIE 53
S + LAA GH V+M + +PL AA H VD LL+ ++
Sbjct: 111 SCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVN 170
Query: 54 EVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCV 113
+ + L A G+ + LL+E GAN++ N +G + L A + + M+
Sbjct: 171 LGD--KYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINH 228
Query: 114 LLQKGAKINA 123
L +
Sbjct: 229 LQEARQAKGY 238
Score = 61.3 bits (150), Expect = 4e-11
Identities = 26/99 (26%), Positives = 35/99 (35%), Gaps = 18/99 (18%)
Query: 9 PLTLAACGGH--------------VNMPTDSF-ESPLTLAACGGHVDLALLLIERGANIE 53
PL AA H VN+ + L A G+ + LL+E GAN++
Sbjct: 145 PLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVD 204
Query: 54 EVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVN 92
N ES L LA +V + L E N
Sbjct: 205 AQN---IKGESALDLAKQRKNVWMINHLQEARQAKGYDN 240
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT
signaling, POL ribosylation, transferase-signaling
protein complex; 2.00A {Mus musculus}
Length = 351
Score = 163 bits (414), Expect = 2e-47
Identities = 48/181 (26%), Positives = 72/181 (39%), Gaps = 8/181 (4%)
Query: 7 ESPLTLAACGGHVNMPTDSFESPLTLAAC-GGHVDLALLLIERGANIEEVNMPTDSFESP 65
+S L LA + + + L AA G L LL N + +P
Sbjct: 5 KSALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASD---GRKSTP 61
Query: 66 LTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHT 125
L LAA V + LL++ GA++ + G PL A GH E+ +LL+ GA +NA
Sbjct: 62 LHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMD 121
Query: 126 EETQETALTLACCGGFLDVADFLLKNGANIELGA---STPLMEAAQEGHLELVRYLLDSG 182
Q T L A ++V LL +GA+ L + + A E + Y
Sbjct: 122 LW-QFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGH 180
Query: 183 A 183
+
Sbjct: 181 S 181
Score = 143 bits (362), Expect = 7e-40
Identities = 44/189 (23%), Positives = 75/189 (39%), Gaps = 27/189 (14%)
Query: 9 PLTLAACGGH--------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEE 54
L AA G+ + +PL LAA V + LL++ GA++
Sbjct: 27 ELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHA 86
Query: 55 VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVL 114
+ PL A GH ++ LL++ GA + ++ +TPL EAA + E+ +L
Sbjct: 87 KD---KGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLL 143
Query: 115 LQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLEL 174
L GA ++A+ +A + + K + L++AA+E L
Sbjct: 144 LSHGADPTLVNCH-GKSAVDMAPTPELRERLTYEFKGHS---------LLQAAREADLAK 193
Query: 175 VRYLLDSGA 183
V+ L
Sbjct: 194 VKKTLALEI 202
Score = 140 bits (356), Expect = 6e-39
Identities = 51/218 (23%), Positives = 76/218 (34%), Gaps = 46/218 (21%)
Query: 7 ESPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIE 53
PL A GH VN +PL AA V++ LL+ GA+
Sbjct: 92 LVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGAD-- 149
Query: 54 EVNMPTDSFESPLTLAACGGHVDLA----------------------LLLIERGANIEEV 91
+ +S + +A + L N ++
Sbjct: 150 -PTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQ- 207
Query: 92 NDEGYTPLMEAAREGHE---EMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFL 148
T L A H ++ +LL+KGA +N ++ T L +A DV + L
Sbjct: 208 PQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKD-FMTPLHVAAERAHNDVMEVL 266
Query: 149 LKNGANIELGAS---TPLMEAAQEGHLELVRYLLDSGA 183
K+GA + S T L AA GHL+ R LL G+
Sbjct: 267 HKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGS 304
Score = 128 bits (324), Expect = 2e-34
Identities = 40/159 (25%), Positives = 66/159 (41%), Gaps = 13/159 (8%)
Query: 16 GGHVNMPTDSFESPLTLAACGGH---VDLALLLIERGANIEEVNMPTDSFESPLTLAACG 72
S E+ L A H +A LL+ +GAN+ E N F +PL +AA
Sbjct: 201 EIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKN---KDFMTPLHVAAER 257
Query: 73 GHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETA 132
H D+ +L + GA + ++ G T L AA GH + +LL G+ + + + TA
Sbjct: 258 AHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQ-GFTA 316
Query: 133 LTLACCGGFLDVADFLLKNGANIELG-ASTPLMEAAQEG 170
+ + +L + L+EA++ G
Sbjct: 317 AQMGN-----EAVQQILSESTPMRTSDVDYRLLEASKAG 350
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene
family, nuclear protein, phosphorylation, disease
mutation, polymorphism; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.211.1.1 PDB: 4a63_B
Length = 239
Score = 158 bits (401), Expect = 9e-47
Identities = 37/168 (22%), Positives = 62/168 (36%), Gaps = 11/168 (6%)
Query: 22 PTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLL 81
P + + L I G ++ + L ++ G DL +
Sbjct: 1 PEITGQVSLPPGKRTNLRKTGSERIAHGMRVKF----NPLPLALLLDSSLEGEFDLVQRI 56
Query: 82 IERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGF 141
I + NDEG T L A GH E+V L+Q G +NA + T L A
Sbjct: 57 IYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSD-GWTPLHCAASCNN 115
Query: 142 LDVADFLLKNGANIE------LGASTPLMEAAQEGHLELVRYLLDSGA 183
+ V FL+++GA + + + E +EG+ + ++L
Sbjct: 116 VQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQE 163
Score = 148 bits (376), Expect = 3e-43
Identities = 38/191 (19%), Positives = 67/191 (35%), Gaps = 22/191 (11%)
Query: 2 PTDSFESPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIER 48
P + + L V + L ++ G DL +I
Sbjct: 1 PEITGQVSLPPGKRTNLRKTGSERIAHGMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYE 59
Query: 49 GANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHE 108
+ N D + L A C GH ++ L++ G N+ + +G+TPL AA +
Sbjct: 60 VDDPSLPN---DEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNV 116
Query: 109 EMVCVLLQKGAKINAHTEETQETALTL--ACCGGFLDVADFLLKNGANIEL---GASTPL 163
++ L++ GA + A T +TA G+ + FL + + G L
Sbjct: 117 QVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYAL 176
Query: 164 MEAAQEGHLEL 174
+ + EL
Sbjct: 177 WDYEPQNDDEL 187
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat,
alternative splicing, ANK repeat, chromatin regulator,
nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP:
k.37.1.1 PDB: 3b95_A*
Length = 237
Score = 157 bits (399), Expect = 2e-46
Identities = 51/169 (30%), Positives = 82/169 (48%), Gaps = 8/169 (4%)
Query: 19 VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLA 78
M + SPL AA GHVD+ +L++ GANI+ + + +PL AA H++
Sbjct: 4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCS---EDQRTPLMEAAENNHLEAV 60
Query: 79 LLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAK-INAHTEETQETALTLAC 137
LI+ GA ++ + EG T L AA++GH E+V LL G +N + T + A
Sbjct: 61 KYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDG-GWTPMIWAT 119
Query: 138 CGGFLDVADFLLKNGANIELGA---STPLMEAAQEGHLELVRYLLDSGA 183
+D+ LL G++I + + L AA G +++ LL +
Sbjct: 120 EYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKC 168
Score = 156 bits (398), Expect = 2e-46
Identities = 52/194 (26%), Positives = 87/194 (44%), Gaps = 21/194 (10%)
Query: 7 ESPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIE 53
SPL AA GH ++ ++ +PL AA H++ LI+ GA ++
Sbjct: 12 RSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVD 71
Query: 54 EVNMPTDSFESPLTLAACGGHVDLALLLIERGA-NIEEVNDEGYTPLMEAAREGHEEMVC 112
+ + L LAA GH ++ L+ G ++ +D G+TP++ A H ++V
Sbjct: 72 PKD---AEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVK 128
Query: 113 VLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGA---STPLMEAAQE 169
+LL KG+ IN E + L A G +D+A+ LL ++ +PL AA+E
Sbjct: 129 LLLSKGSDINIRDNE-ENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARE 187
Query: 170 GHLELVRYLLDSGA 183
+ V L +
Sbjct: 188 NRYDCVVLFLSRDS 201
Score = 153 bits (389), Expect = 5e-45
Identities = 44/193 (22%), Positives = 74/193 (38%), Gaps = 19/193 (9%)
Query: 7 ESPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIE 53
+PL AA H V+ + L LAA GH ++ L+ G
Sbjct: 45 RTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQ--M 102
Query: 54 EVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCV 113
+VN D +P+ A HVDL LL+ +G++I ++E L AA G ++ +
Sbjct: 103 DVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEI 162
Query: 114 LLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGA---STPLMEAAQEG 170
LL ++A ++ L +A D L +++ L TPL A+
Sbjct: 163 LLAAKCDLHAVNIH-GDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNS 221
Query: 171 HLELVRYLLDSGA 183
+ + +
Sbjct: 222 QVWSALQMSKALQ 234
Score = 125 bits (317), Expect = 2e-34
Identities = 45/160 (28%), Positives = 68/160 (42%), Gaps = 18/160 (11%)
Query: 9 PLTLAACGGH--------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEE 54
L LAA GH VN D +P+ A HVDL LL+ +G++I
Sbjct: 80 CLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINI 139
Query: 55 VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVL 114
+ + L AA G VD+A +L+ ++ VN G +PL AARE + V +
Sbjct: 140 RD---NEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLF 196
Query: 115 LQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGAN 154
L + + + +E ET L A + A + K +
Sbjct: 197 LSRDSDVTLKNKE-GETPLQCASLNSQVWSALQMSKALQD 235
Score = 109 bits (275), Expect = 2e-28
Identities = 35/110 (31%), Positives = 58/110 (52%), Gaps = 4/110 (3%)
Query: 86 ANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVA 145
N + + +PL AA GH ++ +L+Q GA I+ +E+ Q T L A L+
Sbjct: 2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSED-QRTPLMEAAENNHLEAV 60
Query: 146 DFLLKNGANIELGA---STPLMEAAQEGHLELVRYLLDSGAQEMQTKHID 192
+L+K GA ++ ST L AA++GH E+V+YLL +G ++ +
Sbjct: 61 KYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDG 110
Score = 37.0 bits (87), Expect = 0.005
Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 13/58 (22%)
Query: 7 ESPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGAN 51
+SPL +AA V + E+PL A+ V AL + + +
Sbjct: 178 DSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription
factors, ikappab proteins; 1.86A {Homo sapiens} SCOP:
d.211.1.1 PDB: 1k1b_A
Length = 241
Score = 156 bits (398), Expect = 2e-46
Identities = 47/179 (26%), Positives = 80/179 (44%), Gaps = 10/179 (5%)
Query: 12 LAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAAC 71
G +++ + ++PL LA + LL+ GA+ ++ ++ LA
Sbjct: 32 FQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALD---RHGQTAAHLACE 88
Query: 72 GGHVDLALLLIERGA----NIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEE 127
L++ A ++E N +G T L A +E V +LL++GA I+A +
Sbjct: 89 HRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIK 148
Query: 128 TQETALTLACCGGFLDVADFLLKNGANIELGA---STPLMEAAQEGHLELVRYLLDSGA 183
+ + L A L + LL++GAN+ S+ L A+ G L LVR L+ SGA
Sbjct: 149 SGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGA 207
Score = 150 bits (381), Expect = 8e-44
Identities = 47/193 (24%), Positives = 74/193 (38%), Gaps = 19/193 (9%)
Query: 9 PLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEE- 54
PL LA ++ LA L++ A
Sbjct: 49 PLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLD 108
Query: 55 VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDE-GYTPLMEAAREGHEEMVCV 113
+ + L +A + LL+ERGA+I+ V+ + G +PL+ A MV +
Sbjct: 109 LEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQL 168
Query: 114 LLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGAS---TPLMEAAQEG 170
LLQ GA +NA +AL A G L + L+++GA+ L TPLM A
Sbjct: 169 LLQHGANVNAQMYS-GSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRR 227
Query: 171 HLELVRYLLDSGA 183
++++R A
Sbjct: 228 VIDILRGKATRPA 240
Score = 131 bits (333), Expect = 1e-36
Identities = 35/165 (21%), Positives = 61/165 (36%), Gaps = 20/165 (12%)
Query: 7 ESPLTLAACGGH-----------------VNMPTDSFESPLTLAACGGHVDLALLLIERG 49
++ LA + + L +A + LL+ERG
Sbjct: 80 QTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERG 139
Query: 50 ANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEE 109
A+I+ V+ S SPL A + + LL++ GAN+ G + L A+ G
Sbjct: 140 ADIDAVD--IKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLP 197
Query: 110 MVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGAN 154
+V L++ GA + +T L +A +D+ A+
Sbjct: 198 LVRTLVRSGADSSLKNCH-NDTPLMVARSRRVIDILRGKATRPAS 241
Score = 94.4 bits (236), Expect = 9e-23
Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 8/103 (7%)
Query: 90 EVNDEGYTPLMEAAREGHEEMVCVLL----QKGAKINAHTEETQETALTLACCGGFLDVA 145
+++G TPL A +G+ V L+ Q G +++ + ++T L LA V
Sbjct: 4 RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNL-RQTPLHLAVITTLPSVV 62
Query: 146 DFLLKNGANIELGA---STPLMEAAQEGHLELVRYLLDSGAQE 185
L+ GA+ T A + +R LLDS A
Sbjct: 63 RLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPG 105
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin
repeat Pro ribosome display, apoptosis; 1.80A {Synthetic
source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D*
3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B*
2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Length = 169
Score = 153 bits (390), Expect = 4e-46
Identities = 53/154 (34%), Positives = 80/154 (51%), Gaps = 7/154 (4%)
Query: 29 PLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANI 88
L AA G D +L+ GA++ + S +PL LAA GH+++ +L++ GA++
Sbjct: 17 KLLEAARAGRDDEVRILMANGADVNAED---ASGWTPLHLAAFNGHLEIVEVLLKNGADV 73
Query: 89 EEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFL 148
V+ G TPL AA GH E+V VLL+ GA +NA + T L LA G L++ + L
Sbjct: 74 NAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNA-NDMEGHTPLHLAAMFGHLEIVEVL 132
Query: 149 LKNGANIELGA---STPLMEAAQEGHLELVRYLL 179
LKNGA++ T + G+ +L L
Sbjct: 133 LKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 134 bits (339), Expect = 2e-38
Identities = 52/143 (36%), Positives = 71/143 (49%), Gaps = 14/143 (9%)
Query: 44 LLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAA 103
G+++ L AA G D +L+ GA++ + G+TPL AA
Sbjct: 6 HHHHHGSDLG----------KKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAA 55
Query: 104 REGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGA---S 160
GH E+V VLL+ GA +NA T L LA G L++ + LLKNGA++
Sbjct: 56 FNGHLEIVEVLLKNGADVNAVDHA-GMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGH 114
Query: 161 TPLMEAAQEGHLELVRYLLDSGA 183
TPL AA GHLE+V LL +GA
Sbjct: 115 TPLHLAAMFGHLEIVEVLLKNGA 137
Score = 104 bits (263), Expect = 3e-27
Identities = 40/104 (38%), Positives = 59/104 (56%), Gaps = 5/104 (4%)
Query: 84 RGANIEEVND-EGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFL 142
RG++ + + L+EAAR G ++ V +L+ GA +NA + + T L LA G L
Sbjct: 2 RGSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNA-EDASGWTPLHLAAFNGHL 60
Query: 143 DVADFLLKNGANIELGA---STPLMEAAQEGHLELVRYLLDSGA 183
++ + LLKNGA++ TPL AA GHLE+V LL +GA
Sbjct: 61 EIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGA 104
Score = 95.9 bits (240), Expect = 5e-24
Identities = 34/124 (27%), Positives = 62/124 (50%), Gaps = 16/124 (12%)
Query: 7 ESPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIE 53
+PL LAA GH VN + +PL LAA GH+++ +L++ GA++
Sbjct: 48 WTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVN 107
Query: 54 EVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCV 113
+ +PL LAA GH+++ +L++ GA++ + G T + G+E++ +
Sbjct: 108 AND---MEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEI 164
Query: 114 LLQK 117
L +
Sbjct: 165 LQKL 168
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch,
ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB:
3ixe_A 2kbx_A
Length = 179
Score = 153 bits (390), Expect = 6e-46
Identities = 47/158 (29%), Positives = 64/158 (40%), Gaps = 6/158 (3%)
Query: 29 PLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANI 88
+ G+ L ++ N ++N D SPL A G + +LI RGA I
Sbjct: 8 DIFTQCREGNAVAVRLWLDNTEN--DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI 65
Query: 89 EEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFL 148
+N TPL AA GH ++V LLQ A INA E L AC G VA+ L
Sbjct: 66 NVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEH-GNVPLHYACFWGQDQVAEDL 124
Query: 149 LKNGANIELGA---STPLMEAAQEGHLELVRYLLDSGA 183
+ NGA + + P+ +A L G
Sbjct: 125 VANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQ 162
Score = 142 bits (362), Expect = 8e-42
Identities = 43/178 (24%), Positives = 69/178 (38%), Gaps = 21/178 (11%)
Query: 9 PLTLAACGGH--------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEE 54
+ G+ +N D SPL A G + +LI RGA I
Sbjct: 8 DIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINV 67
Query: 55 VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVL 114
+N ++PL LAA GH D+ L++ A+I VN+ G PL A G +++ L
Sbjct: 68 MNR---GDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDL 124
Query: 115 LQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHL 172
+ GA ++ + E + A + + K G N+ P + +G
Sbjct: 125 VANGALVSICNKY-GEMPVDKAKAPLRELLRERAEKMGQNLN---RIPYKDTFWKGTT 178
Score = 106 bits (267), Expect = 8e-28
Identities = 34/130 (26%), Positives = 51/130 (39%), Gaps = 16/130 (12%)
Query: 7 ESPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIE 53
SPL A G +N+ ++PL LAA GH D+ L++ A+I
Sbjct: 40 FSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADIN 99
Query: 54 EVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCV 113
VN + PL A G +A L+ GA + N G P+ +A E +
Sbjct: 100 AVN---EHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRER 156
Query: 114 LLQKGAKINA 123
+ G +N
Sbjct: 157 AEKMGQNLNR 166
Score = 97.5 bits (244), Expect = 2e-24
Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 5/96 (5%)
Query: 92 NDEGYTPLMEAAREGHEEMVCVLLQKGA-KINAHTEETQETALTLACCGGFLDVADFLLK 150
+ E + REG+ V + L +N + + L AC G V + L+
Sbjct: 2 SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDH-GFSPLHWACREGRSAVVEMLIM 60
Query: 151 NGANIEL---GASTPLMEAAQEGHLELVRYLLDSGA 183
GA I + G TPL AA GH ++V+ LL A
Sbjct: 61 RGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKA 96
Score = 41.3 bits (98), Expect = 1e-04
Identities = 6/29 (20%), Positives = 12/29 (41%)
Query: 161 TPLMEAAQEGHLELVRYLLDSGAQEMQTK 189
+ +EG+ VR LD+ ++
Sbjct: 7 DDIFTQCREGNAVAVRLWLDNTENDLNQG 35
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A;
1.80A {Homo sapiens} SCOP: d.211.1.1
Length = 285
Score = 155 bits (395), Expect = 2e-45
Identities = 51/208 (24%), Positives = 79/208 (37%), Gaps = 34/208 (16%)
Query: 7 ESPLTLAACGGH-------------VNMPTDSF-ESPLTLAACGGHVDLALLLIERGANI 52
L A VN + +PL A D+ LL+ GA+
Sbjct: 6 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP 65
Query: 53 EEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVC 112
+ +P LAA G V L L + +GA++ E + G+T MEAA G + +
Sbjct: 66 VLRK---KNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALK 122
Query: 113 VLLQKGAKINAHTEETQE---------TALTLACCGGFLDVADFLL-KNGANIELGA--- 159
L ++GA +N + ++ TAL A G ++V LL + GA++
Sbjct: 123 FLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMG 182
Query: 160 STPLMEAAQEGH----LELVRYLLDSGA 183
L+ A + LLD GA
Sbjct: 183 RNALIHALLSSDDSDVEAITHLLLDHGA 210
Score = 153 bits (388), Expect = 2e-44
Identities = 52/206 (25%), Positives = 75/206 (36%), Gaps = 30/206 (14%)
Query: 7 ESPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIE 53
+P LAA G VN + AA G V L +RGAN+
Sbjct: 73 ATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVN 132
Query: 54 E-------VNMPTDSFESPLTLAACGGHVDLA-LLLIERGANIEEVNDEGYTPLMEAARE 105
+ L AA GHV++ +LL E GA++ ++ G L+ A
Sbjct: 133 LRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLS 192
Query: 106 GH----EEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLL-KNGANIELGAS 160
E + +LL GA +N E +T L LA L + LL + I S
Sbjct: 193 SDDSDVEAITHLLLDHGADVNV-RGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDS 251
Query: 161 ---TPLMEAAQEGHLELVRYLLDSGA 183
T L+ A + ++ L GA
Sbjct: 252 DGKTALLLAVELKLKKIAELLCKRGA 277
Score = 122 bits (309), Expect = 7e-33
Identities = 39/147 (26%), Positives = 64/147 (43%), Gaps = 10/147 (6%)
Query: 16 GGHVNMPTDSFESPLTLAACGGHVDLA-LLLIERGANIEEVNMPTDSFESPLTLAACGGH 74
+ L AA GHV++ +LL E GA++ + + + L A
Sbjct: 138 KEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACD---NMGRNALIHALLSSD 194
Query: 75 VDLAL----LLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLL-QKGAKINAHTEETQ 129
LL++ GA++ + G TPL+ A + H +V LL Q+ +IN +
Sbjct: 195 DSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSD-G 253
Query: 130 ETALTLACCGGFLDVADFLLKNGANIE 156
+TAL LA +A+ L K GA+ +
Sbjct: 254 KTALLLAVELKLKKIAELLCKRGASTD 280
Score = 112 bits (284), Expect = 3e-29
Identities = 29/134 (21%), Positives = 51/134 (38%), Gaps = 22/134 (16%)
Query: 9 PLTLAACGGH--------------VNMPTDSFESPLTLAACGGHVDLAL----LLIERGA 50
L AA GH VN + + L A LL++ GA
Sbjct: 151 ALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGA 210
Query: 51 NIEEVNMPTDSFESPLTLAACGGHVDLA-LLLIERGANIEEVNDEGYTPLMEAAREGHEE 109
++ + ++PL LA H+ L LL + I + + +G T L+ A ++
Sbjct: 211 DVNVRG---ERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKK 267
Query: 110 MVCVLLQKGAKINA 123
+ +L ++GA +
Sbjct: 268 IAELLCKRGASTDC 281
Score = 107 bits (269), Expect = 4e-27
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 3/95 (3%)
Query: 92 NDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKN 151
E L++A + ++V LL+ GA +N EE T L A D+ + LL++
Sbjct: 2 AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61
Query: 152 GANIELGA---STPLMEAAQEGHLELVRYLLDSGA 183
GA+ L +TP + AA G ++L++ L GA
Sbjct: 62 GADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGA 96
Score = 66.3 bits (163), Expect = 1e-12
Identities = 25/103 (24%), Positives = 39/103 (37%), Gaps = 23/103 (22%)
Query: 9 PLTLAACGGH-----------------VNMPTDSFESPLTLAACGGHVDLA-LLLIERGA 50
L A VN+ + ++PL LA H+ L LL +
Sbjct: 185 ALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHI 244
Query: 51 NIEEVNMPTDSF-ESPLTLAACGGHVDLALLLIERGANIEEVN 92
I + TDS ++ L LA +A LL +RGA+ + +
Sbjct: 245 EIND----TDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD 283
Score = 42.5 bits (101), Expect = 1e-04
Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 14/65 (21%)
Query: 7 ESPLTLAACGGH--------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANI 52
++PL LA H +N ++ L LA +A LL +RGA+
Sbjct: 220 KTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAST 279
Query: 53 EEVNM 57
+ ++
Sbjct: 280 DCGDL 284
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system,
signal sequence, ankyrin repeat, chromodomain, type I
turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2
k.37.1.1 PDB: 3dep_A 1x32_A
Length = 183
Score = 151 bits (383), Expect = 7e-45
Identities = 33/159 (20%), Positives = 61/159 (38%), Gaps = 10/159 (6%)
Query: 29 PLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANI 88
+ GH + A++ E+P AA L+E ++
Sbjct: 17 EYLIEWKDGHSPSWVPSSYIAADVVSEY------ETPWWTAARKADEQALSQLLE-DRDV 69
Query: 89 EEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFL 148
+ V++ G T L+ A G ++ V +L + GA ++ TAL +A +V + L
Sbjct: 70 DAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEAL 129
Query: 149 LKNGANIELGAS---TPLMEAAQEGHLELVRYLLDSGAQ 184
++ GA+IE+ T L A + + G +
Sbjct: 130 VELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRR 168
Score = 119 bits (302), Expect = 6e-33
Identities = 39/186 (20%), Positives = 62/186 (33%), Gaps = 36/186 (19%)
Query: 9 PLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEV 55
+ GH V +E+P AA L+E +++ V
Sbjct: 17 EYLIEWKDGHSPSWVPSSYIAADVV---SEYETPWWTAARKADEQALSQLLE-DRDVDAV 72
Query: 56 NMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDE-GYTPLMEAAREGHEEMVCVL 114
+ ++ + L A G LL E GA+++ + G T L AA E+V L
Sbjct: 73 D---ENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEAL 129
Query: 115 LQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLEL 174
++ GA I E TAL LA ++ G I G ++
Sbjct: 130 VELGADIEVEDERGL-TALELAREILKTTPKGNPMQFGRRI--------------GLEKV 174
Query: 175 VRYLLD 180
+ L
Sbjct: 175 INVLEG 180
Score = 111 bits (279), Expect = 2e-29
Identities = 29/130 (22%), Positives = 48/130 (36%), Gaps = 14/130 (10%)
Query: 7 ESPLTLAACGGH------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEE 54
E+P AA V+ ++ + L A G LL E GA+++
Sbjct: 45 ETPWWTAARKADEQALSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDH 104
Query: 55 VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVL 114
+ + L +AA ++ L+E GA+IE ++ G T L A
Sbjct: 105 RD--MRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNP 162
Query: 115 LQKGAKINAH 124
+Q G +I
Sbjct: 163 MQFGRRIGLE 172
Score = 91.0 bits (227), Expect = 4e-22
Identities = 19/102 (18%), Positives = 32/102 (31%), Gaps = 8/102 (7%)
Query: 85 GANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDV 144
EG + ++GH A + + ET A
Sbjct: 4 KIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEY----ETPWWTAARKADEQA 59
Query: 145 ADFLLKNGANIELGAS---TPLMEAAQEGHLELVRYLLDSGA 183
LL+ +++ T L+ A G + VR L ++GA
Sbjct: 60 LSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGA 100
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein
complex, transcription factors, nuclear localization,
DNA binding protein; 2.05A {Mus musculus} SCOP:
d.211.1.1 PDB: 1k3z_D
Length = 282
Score = 153 bits (388), Expect = 2e-44
Identities = 46/202 (22%), Positives = 67/202 (33%), Gaps = 27/202 (13%)
Query: 9 PLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEE- 54
L LAA G V + + L LA A +L++ +
Sbjct: 48 ALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRD 107
Query: 55 ---------VNMPTDSFESPLTLAA-CGGHVDLALLLIERGANIEEVNDEGYTPLMEAAR 104
+ D+ +P + + + + +E N +G+TPL A
Sbjct: 108 ASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVI 167
Query: 105 EGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGAS---T 161
EMV +L GA +N T L LA V + LLK GA+ T
Sbjct: 168 HKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRT 227
Query: 162 PLMEAAQEGHLELVRYLLDSGA 183
PL A + L R L GA
Sbjct: 228 PLGSALLRPNPILARLLRAHGA 249
Score = 151 bits (384), Expect = 7e-44
Identities = 41/181 (22%), Positives = 58/181 (32%), Gaps = 16/181 (8%)
Query: 19 VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLA 78
T+ ++ L LA H L+ A E +++ D ++ L LAA G
Sbjct: 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61
Query: 79 LLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEET---------- 128
L GA + G+T L A R CVLLQ +T
Sbjct: 62 EKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTP 121
Query: 129 ---QETALTLACCGGFLDVADFLLKNGANIELGAS---TPLMEAAQEGHLELVRYLLDSG 182
A + + +E TPL A E+VR L D+G
Sbjct: 122 DTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAG 181
Query: 183 A 183
A
Sbjct: 182 A 182
Score = 135 bits (342), Expect = 1e-37
Identities = 29/168 (17%), Positives = 56/168 (33%), Gaps = 9/168 (5%)
Query: 18 HVNMPTDSFESPLTLAA-CGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVD 76
+ D+ +P + + + + +E N +PL +A +
Sbjct: 116 SQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAEN---YDGHTPLHVAVIHKDAE 172
Query: 77 LALLLIERGANIEEV-NDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTL 135
+ LL + GA++ + G TPL A ++ +LL+ GA A T L
Sbjct: 173 MVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYG-GRTPLGS 231
Query: 136 ACCGGFLDVADFLLKNGANIELGA---STPLMEAAQEGHLELVRYLLD 180
A +A L +GA +P + + + +
Sbjct: 232 ALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNRDEGDE 279
Score = 133 bits (338), Expect = 4e-37
Identities = 36/215 (16%), Positives = 66/215 (30%), Gaps = 38/215 (17%)
Query: 3 TDSFESPLTLAACGGH----------------VNMPTDSFESPLTLAACGGHVDLALLLI 46
T+ ++ L LA H +++ D ++ L LAA G L
Sbjct: 6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65
Query: 47 ERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTP-------- 98
GA + + L LA A +L++ + + Y
Sbjct: 66 AAGAGVLVAE---RGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPD 122
Query: 99 ------LMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNG 152
+++ E ++ A + T L +A ++ L G
Sbjct: 123 TSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYD-GHTPLHVAVIHKDAEMVRLLRDAG 181
Query: 153 ANI----ELGASTPLMEAAQEGHLELVRYLLDSGA 183
A++ TPL A + ++ LL +GA
Sbjct: 182 ADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA 216
Score = 123 bits (310), Expect = 5e-33
Identities = 25/137 (18%), Positives = 47/137 (34%), Gaps = 3/137 (2%)
Query: 16 GGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHV 75
+ +PL +A ++ LL + GA++ + +PL LA
Sbjct: 148 RLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPE--PTCGRTPLHLAVEAQAA 205
Query: 76 DLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTL 135
+ LL++ GA+ G TPL A + + +L GA + + +
Sbjct: 206 SVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKL-SPCSS 264
Query: 136 ACCGGFLDVADFLLKNG 152
+ D D +
Sbjct: 265 SGSDSDSDNRDEGDEYD 281
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein
binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Length = 192
Score = 149 bits (379), Expect = 4e-44
Identities = 43/185 (23%), Positives = 72/185 (38%), Gaps = 16/185 (8%)
Query: 7 ESPLTLAACGGH-------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPT 59
E + N +PL +A G + L+E +E+ +
Sbjct: 9 EIVEKIKDEKSINQNLDFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKD--- 65
Query: 60 DSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGA 119
+ L A + +A L+ +G+N+ + G TPLM + G+ EM LL+ GA
Sbjct: 66 IEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGA 125
Query: 120 KINAHTEETQETALTLACCGGFLDVADFLLKNGANIE----LGASTPLMEAAQEGHLELV 175
+N ET L +A G ++ LL+ GA+I G T A G E++
Sbjct: 126 NVND-RNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTG-LTAEASARIFGRQEVI 183
Query: 176 RYLLD 180
+ +
Sbjct: 184 KIFTE 188
Score = 133 bits (338), Expect = 4e-38
Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 15/161 (9%)
Query: 27 ESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGA 86
E + L + +PL +A G + L+E
Sbjct: 9 EIVEKIKDEKSINQNLDFLRNYRDSYNR---------TPLMVACMLGMENAIDKLVENFD 59
Query: 87 NIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVAD 146
+E+ + EG T L+ A + + LL KG+ +N +T L + G+ +++
Sbjct: 60 KLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFS-GKTPLMWSIIFGYSEMSY 118
Query: 147 FLLKNGANIE----LGASTPLMEAAQEGHLELVRYLLDSGA 183
FLL++GAN+ G TPL+ A++ G E+V+ LL+ GA
Sbjct: 119 FLLEHGANVNDRNLEG-ETPLIVASKYGRSEIVKKLLELGA 158
Score = 117 bits (295), Expect = 1e-31
Identities = 40/158 (25%), Positives = 68/158 (43%), Gaps = 17/158 (10%)
Query: 9 PLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEV 55
PL +A G + + L A + +A L+ +G+N+
Sbjct: 38 PLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTK 97
Query: 56 NMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLL 115
+ S ++PL + G+ +++ L+E GAN+ + N EG TPL+ A++ G E+V LL
Sbjct: 98 D---FSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLL 154
Query: 116 QKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGA 153
+ GA I+A TA A G +V +
Sbjct: 155 ELGADISARDLT-GLTAEASARIFGRQEVIKIFTEVRR 191
Score = 49.3 bits (119), Expect = 2e-07
Identities = 12/70 (17%), Positives = 21/70 (30%), Gaps = 15/70 (21%)
Query: 118 GAKINAHTEETQETALTLACCGGFLDVADFLL----KNGANIELGASTPLMEAAQEGHLE 173
G+ ++ + E + DFL TPLM A G
Sbjct: 1 GSHMDKN----GEIVEKIKDEKSINQNLDFLRNYRDSYN-------RTPLMVACMLGMEN 49
Query: 174 LVRYLLDSGA 183
+ L+++
Sbjct: 50 AIDKLVENFD 59
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin
repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A
1ymp_A
Length = 223
Score = 149 bits (379), Expect = 1e-43
Identities = 49/201 (24%), Positives = 77/201 (38%), Gaps = 21/201 (10%)
Query: 7 ESPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGA-NI 52
E+ L LAA N+ + +PL A + +LI A ++
Sbjct: 26 ETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDL 85
Query: 53 EEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVC 112
+ +PL LAA + LI A++ V+D G + L AA + +
Sbjct: 86 DARM---HDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAV 142
Query: 113 VLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGAS---TPLMEAAQE 169
VLL+ GA + +ET L LA G + A LL + AN ++ P A +
Sbjct: 143 VLLKNGANKDMQNNR-EETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQER 201
Query: 170 GHLELVRYLLDSGAQEMQTKH 190
H ++VR L + H
Sbjct: 202 MHHDIVRLLDEYNLVRSPQLH 222
Score = 137 bits (348), Expect = 3e-39
Identities = 36/152 (23%), Positives = 65/152 (42%), Gaps = 7/152 (4%)
Query: 36 GGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEG 95
G + I +GA++ N + E+ L LAA D A L+E A+ ++ G
Sbjct: 1 GDAPAVISDFIYQGASLH--NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMG 58
Query: 96 YTPLMEAAREGHEEMVCVLLQKGAK-INAHTEETQETALTLACCGGFLDVADFLLKNGAN 154
TPL A + + +L++ A ++A + T L LA + + L+ + A+
Sbjct: 59 RTPLHAAVSADAQGVFQILIRNRATDLDARMHD-GTTPLILAARLAVEGMLEDLINSHAD 117
Query: 155 IELGA---STPLMEAAQEGHLELVRYLLDSGA 183
+ + L AA +++ LL +GA
Sbjct: 118 VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGA 149
Score = 82.1 bits (204), Expect = 2e-18
Identities = 22/122 (18%), Positives = 37/122 (30%), Gaps = 32/122 (26%)
Query: 72 GGHVDLALLLIERGANIE-EVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQE 130
G + I +GA++ + + G T L AAR + LL+ A N
Sbjct: 1 GDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQD----- 55
Query: 131 TALTLACCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLELVRYLLDSGAQEMQTKH 190
G TPL A + + L+ + A ++ +
Sbjct: 56 -------------------NMG-------RTPLHAAVSADAQGVFQILIRNRATDLDARM 89
Query: 191 ID 192
D
Sbjct: 90 HD 91
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A
{Enterococcus faecalis}
Length = 201
Score = 148 bits (376), Expect = 1e-43
Identities = 41/168 (24%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 27 ESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGA 86
+ L A + +L + ++EV+ +PL +A +++A LI+RGA
Sbjct: 7 GALLEAANQRDTKKVKEILQDTTYQVDEVD---TEGNTPLNIAVHNNDIEIAKALIDRGA 63
Query: 87 NIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAK-INAHTEETQETALTLACCGGFLDVA 145
+I N +P + A +G E++ +L+ +N H AL A G +D
Sbjct: 64 DINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRY-GGNALIPAAEKGHIDNV 122
Query: 146 DFLLKNG-ANIE----LGASTPLMEAA-----QEGHLELVRYLLDSGA 183
LL++G +I+ G T L+EA + + ++V+ L+++GA
Sbjct: 123 KLLLEDGREDIDFQNDFG-YTALIEAVGLREGNQLYQDIVKLLMENGA 169
Score = 142 bits (361), Expect = 2e-41
Identities = 46/197 (23%), Positives = 82/197 (41%), Gaps = 29/197 (14%)
Query: 7 ESPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIE 53
+ L A V+ +PL +A +++A LI+RGA+I
Sbjct: 7 GALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADIN 66
Query: 54 EVNMPTDSFESPLTLAACGGHVDLALLLIERGA-NIEEVNDEGYTPLMEAAREGHEEMVC 112
N +SP A G ++ +++ ++ + N G L+ AA +GH + V
Sbjct: 67 LQN---SISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVK 123
Query: 113 VLLQKG-AKINAHTEETQETALTLACCG-----GFLDVADFLLKNGANIEL----GASTP 162
+LL+ G I+ + TAL A + D+ L++NGA+ + G T
Sbjct: 124 LLLEDGREDIDFQNDFGY-TALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSG-RTA 181
Query: 163 LMEAAQEGHLELVRYLL 179
+ A Q+G+ E+ + L
Sbjct: 182 MDYANQKGYTEISKILA 198
Score = 107 bits (269), Expect = 6e-28
Identities = 37/164 (22%), Positives = 71/164 (43%), Gaps = 24/164 (14%)
Query: 7 ESPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGA-NI 52
+PL +A +N+ +SP A G ++ +++ ++
Sbjct: 40 NTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDL 99
Query: 53 EEVNMPTDSFESPLTLAACGGHVDLALLLIERG-ANIEEVNDEGYTPLMEAA-----REG 106
+ N + L AA GH+D LL+E G +I+ ND GYT L+EA +
Sbjct: 100 NKHN---RYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQL 156
Query: 107 HEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLK 150
++++V +L++ GA + TA+ A G+ +++ L +
Sbjct: 157 YQDIVKLLMENGADQSIKDNS-GRTAMDYANQKGYTEISKILAQ 199
Score = 99.1 bits (248), Expect = 7e-25
Identities = 20/104 (19%), Positives = 44/104 (42%), Gaps = 4/104 (3%)
Query: 92 NDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKN 151
E L A + +++ +L +++ + T L +A +++A L+
Sbjct: 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDE-VDTEGNTPLNIAVHNNDIEIAKALIDR 61
Query: 152 GANIELGAS---TPLMEAAQEGHLELVRYLLDSGAQEMQTKHID 192
GA+I L S +P + A +G E++ Y+L ++ +
Sbjct: 62 GADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRY 105
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat,
chromodomain, aromatic CAGE, signal recognit particle,
protein targeting; 3.18A {Arabidopsis thaliana} PDB:
1x3q_A 2hug_A
Length = 244
Score = 149 bits (379), Expect = 2e-43
Identities = 34/180 (18%), Positives = 63/180 (35%), Gaps = 16/180 (8%)
Query: 7 ESPLTLAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPL 66
E + + + GH + A++ E+P
Sbjct: 2 EVNKIIGSRTAGEGA------MEYLIEWKDGHSPSWVPSSYIAADVVSEY------ETPW 49
Query: 67 TLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTE 126
AA L+E +++ V++ G T L+ A G ++ V +L + GA ++
Sbjct: 50 WTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDM 108
Query: 127 ETQETALTLACCGGFLDVADFLLKNGANIELGAS---TPLMEAAQEGHLELVRYLLDSGA 183
TAL +A +V + L++ GA+IE+ T L A + + G
Sbjct: 109 RGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGR 168
Score = 136 bits (345), Expect = 2e-38
Identities = 33/189 (17%), Positives = 60/189 (31%), Gaps = 23/189 (12%)
Query: 7 ESPLTLAACGGH------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEE 54
E+P AA V+ ++ + L A G LL E GA+++
Sbjct: 46 ETPWWTAARKADEQALSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDH 105
Query: 55 VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVL 114
+ + L +AA ++ L+E GA+IE ++ G T L A
Sbjct: 106 RD--MRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNP 163
Query: 115 LQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLEL 174
+Q G +I + + + +V + + K G + +
Sbjct: 164 MQFGRRIGLE----KVINVLEGQVFEYAEVDEIVEKRGKG-----KDVEYLVRWKDGGDC 214
Query: 175 VRYLLDSGA 183
A
Sbjct: 215 EWVKGVHVA 223
Score = 102 bits (257), Expect = 9e-26
Identities = 27/179 (15%), Positives = 49/179 (27%), Gaps = 30/179 (16%)
Query: 9 PLTLAACGGHVNM--------------PTDSFESPLTLAACGGHVDLALLLIERGANIEE 54
L A G + L +AA ++ L+E GA+IE
Sbjct: 80 ALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEV 139
Query: 55 VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVL 114
+ + + L LA ++ G I E ++E + E+ ++
Sbjct: 140 ED---ERGLTALELAREILKTTPKGNPMQFGRRI---GLEKVINVLEGQVFEYAEVDEIV 193
Query: 115 LQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANI-ELGASTPLMEAAQEGHL 172
++G + L D + A L A E +
Sbjct: 194 EKRGKG---------KDVEYLVRWKDGGDCEWVKGVHVAEDVAKDYEDGLEYAVAESVI 243
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase
(M130), serine/threonine protein phosphatase PP1-beta
(OR delta) catalytic subunit; myosin phosphatase; HET:
PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Length = 299
Score = 150 bits (382), Expect = 2e-43
Identities = 42/179 (23%), Positives = 73/179 (40%), Gaps = 16/179 (8%)
Query: 29 PLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANI 88
L G + + + + A G + L L+ERGA+I
Sbjct: 11 NEQLKRWIGSETDLEPPVVKRKKTKV----KFDDGAVFLAACSSGDTEEVLRLLERGADI 66
Query: 89 EEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFL 148
N +G T L +A + + +MV L++ GA IN E L A G+LD+A++L
Sbjct: 67 NYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNE-GWIPLHAAASCGYLDIAEYL 125
Query: 149 LKNGANIELGAS---TPLMEAAQEGHLELVRYLLDSGAQEMQTK--------HIDILEF 196
+ GA++ S TPL A +E EL++ ++ +++ D ++
Sbjct: 126 ISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQW 184
Score = 139 bits (352), Expect = 6e-39
Identities = 42/189 (22%), Positives = 72/189 (38%), Gaps = 23/189 (12%)
Query: 9 PLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEV 55
L G + + A G + L L+ERGA+I
Sbjct: 11 NEQLKRWIGSETDLEPPVVKRKKTKV-KFDDGAVFLAACSSGDTEEVLRLLERGADINYA 69
Query: 56 NMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLL 115
N + L A +VD+ L+E GANI + ++EG+ PL AA G+ ++ L+
Sbjct: 70 N---VDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLI 126
Query: 116 QKGAKINAHTEETQETALTLACCGGFLDVADFLL-KNGANIELGASTPLMEAAQEGHLEL 174
+GA + A E +T L +A ++ + + G +IE E + +
Sbjct: 127 SQGAHVGAVNSE-GDTPLDIAEEEAMEELLQNEVNRQGVDIE----AARKEEERIMLRDA 181
Query: 175 VRYLLDSGA 183
++L
Sbjct: 182 RQWLNSGHI 190
Score = 138 bits (350), Expect = 1e-38
Identities = 45/193 (23%), Positives = 74/193 (38%), Gaps = 28/193 (14%)
Query: 9 PLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEV 55
L A + +N P + PL AA G++D+A LI +GA++ V
Sbjct: 76 ALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAV 135
Query: 56 NMPTDSFESPLTLAACGGHVDLALLLIER-GANIEEVNDEGYTPLMEAAREGHEEMVCVL 114
N ++PL +A +L + R G +IE E R + L
Sbjct: 136 N---SEGDTPLDIAEEEAMEELLQNEVNRQGVDIE-------AARKEEERIMLRDARQWL 185
Query: 115 LQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGAS---TPLMEAAQEGH 171
H + + TAL +A G+ +V L++ ++ + TPL AA G
Sbjct: 186 NSGHINDVRHAK-SGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGK 244
Query: 172 LELVRYLLDSGAQ 184
E R L+++
Sbjct: 245 EEACRILVENLCD 257
Score = 126 bits (319), Expect = 4e-34
Identities = 37/192 (19%), Positives = 59/192 (30%), Gaps = 28/192 (14%)
Query: 9 PLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIER-GANIEE 54
PL AA G+ V ++PL +A +L + R G +IE
Sbjct: 109 PLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEA 168
Query: 55 VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVL 114
D L N G T L AA +G+ E++ +L
Sbjct: 169 ----------ARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLL 218
Query: 115 LQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGA---STPLMEAAQEGH 171
+Q +N + T L A G + L++N ++E T A ++
Sbjct: 219 IQARYDVNIKDYD-GWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDIL 277
Query: 172 LELVRYLLDSGA 183
L
Sbjct: 278 GYLEELQKKQNL 289
Score = 112 bits (284), Expect = 4e-29
Identities = 32/157 (20%), Positives = 56/157 (35%), Gaps = 11/157 (7%)
Query: 7 ESPLTLAACGGH-------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPT 59
++PL +A VN E+ D L N
Sbjct: 140 DTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHA--- 196
Query: 60 DSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGA 119
S + L +AA G+ ++ LLI+ ++ + +G+TPL AA G EE +L++
Sbjct: 197 KSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLC 256
Query: 120 KINAHTEETQETALTLACCGGFLDVADFLLKNGANIE 156
+ A + +TA +A + + K
Sbjct: 257 DMEAVNKV-GQTAFDVADEDILGYLEELQKKQNLLHS 292
Score = 97.6 bits (244), Expect = 2e-23
Identities = 22/112 (19%), Positives = 45/112 (40%), Gaps = 3/112 (2%)
Query: 16 GGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHV 75
+ S + L +AA G+ ++ LLI+ ++ + +PL AA G
Sbjct: 189 HINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKD---YDGWTPLHAAAHWGKE 245
Query: 76 DLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEE 127
+ +L+E ++E VN G T A + + + ++ + E+
Sbjct: 246 EACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNLLHSEKREK 297
Score = 87.2 bits (217), Expect = 9e-20
Identities = 19/99 (19%), Positives = 41/99 (41%), Gaps = 5/99 (5%)
Query: 88 IEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADF 147
++ + + G E + + K K ++ AC G +
Sbjct: 1 MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDD--GAVFLAACSSGDTEEVLR 58
Query: 148 LLKNGANIELGA---STPLMEAAQEGHLELVRYLLDSGA 183
LL+ GA+I T L +A + ++++V++L+++GA
Sbjct: 59 LLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGA 97
Score = 31.7 bits (73), Expect = 0.33
Identities = 9/59 (15%), Positives = 15/59 (25%), Gaps = 13/59 (22%)
Query: 9 PLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEE 54
PL AA G + ++ +A L L ++ E
Sbjct: 235 PLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNLLHSE 293
Score = 29.4 bits (67), Expect = 1.8
Identities = 1/24 (4%), Positives = 4/24 (16%)
Query: 161 TPLMEAAQEGHLELVRYLLDSGAQ 184
G + + +
Sbjct: 10 RNEQLKRWIGSETDLEPPVVKRKK 33
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle
inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A
1mx2_A 1mx6_A
Length = 162
Score = 145 bits (370), Expect = 4e-43
Identities = 43/165 (26%), Positives = 73/165 (44%), Gaps = 9/165 (5%)
Query: 23 TDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLI 82
+ + + L AA G ++ L++ N+ N + L + G + ++A L+
Sbjct: 2 AEPWGNELASAAARGDLEQLTSLLQNNVNVNAQN---GFGRTALQVMKLG-NPEIARRLL 57
Query: 83 ERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFL 142
RGAN + + G+ + +AAR G + + LL+ A +N E L LA G L
Sbjct: 58 LRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNE-GNLPLHLAAKEGHL 116
Query: 143 DVADFLLKNGA-NIELGA---STPLMEAAQEGHLELVRYLLDSGA 183
V +FL+K+ A N+ T A G E+V + +GA
Sbjct: 117 RVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 93.6 bits (234), Expect = 3e-23
Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 5/96 (5%)
Query: 91 VNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLK 150
+ + L AA G E + LLQ +NA TAL + G ++A LL
Sbjct: 1 MAEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGF-GRTALQVMKLGN-PEIARRLLL 58
Query: 151 NGANIELGA---STPLMEAAQEGHLELVRYLLDSGA 183
GAN +L + +AA+ G L+ ++ LL+ A
Sbjct: 59 RGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQA 94
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell
cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A
2f8x_K 3nbn_B 3v79_K* 1ot8_A
Length = 253
Score = 148 bits (377), Expect = 4e-43
Identities = 54/161 (33%), Positives = 79/161 (49%), Gaps = 8/161 (4%)
Query: 27 ESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGA 86
E+ L LAA D A L+E A+ N+ + +PL A + +LI A
Sbjct: 58 ETALHLAARYSRSDAAKRLLEASADA---NIQDNMGRTPLHAAVSADAQGVFQILIRNRA 114
Query: 87 -NIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVA 145
+++ +G TPL+ AAR E M+ L+ A +NA + ++AL A +D A
Sbjct: 115 TDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDL-GKSALHWAAAVNNVDAA 173
Query: 146 DFLLKNGANIELGAS---TPLMEAAQEGHLELVRYLLDSGA 183
LLKNGAN ++ + TPL AA+EG E + LLD A
Sbjct: 174 VVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFA 214
Score = 146 bits (372), Expect = 2e-42
Identities = 48/193 (24%), Positives = 75/193 (38%), Gaps = 19/193 (9%)
Query: 7 ESPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIE 53
E+ L LAA N+ + +PL A + +LI A
Sbjct: 58 ETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRAT-- 115
Query: 54 EVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCV 113
+++ +PL LAA + LI A++ V+D G + L AA + + V
Sbjct: 116 DLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVV 175
Query: 114 LLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGA---STPLMEAAQEG 170
LL+ GA + +ET L LA G + A LL + AN ++ P A +
Sbjct: 176 LLKNGANKDMQNNR-EETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERM 234
Query: 171 HLELVRYLLDSGA 183
H ++VR L
Sbjct: 235 HHDIVRLLDLEHH 247
Score = 142 bits (362), Expect = 6e-41
Identities = 40/179 (22%), Positives = 71/179 (39%), Gaps = 14/179 (7%)
Query: 9 PLTLAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTL 68
PL +A+C G + I +GA++ N + E+ L L
Sbjct: 13 PLMIASCSGGG-------LETGNSEEEEDAPAVISDFIYQGASLH--NQTDRTGETALHL 63
Query: 69 AACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAK-INAHTEE 127
AA D A L+E A+ ++ G TPL A + + +L++ A ++A +
Sbjct: 64 AARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHD 123
Query: 128 TQETALTLACCGGFLDVADFLLKNGANIELG---ASTPLMEAAQEGHLELVRYLLDSGA 183
T L LA + + L+ + A++ + L AA +++ LL +GA
Sbjct: 124 -GTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGA 181
Score = 124 bits (314), Expect = 6e-34
Identities = 42/163 (25%), Positives = 63/163 (38%), Gaps = 18/163 (11%)
Query: 7 ESPLTLAACGGH--------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANI 52
+PL A ++ +PL LAA + LI A++
Sbjct: 91 RTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV 150
Query: 53 EEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVC 112
V+ D +S L AA +VD A++L++ GAN + N+ TPL AAREG E
Sbjct: 151 NAVD---DLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAK 207
Query: 113 VLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANI 155
VLL A + T+ +A D+ L +
Sbjct: 208 VLLDHFANRDI-TDHMDRLPRDIAQERMHHDIVRLLDLEHHHH 249
Score = 101 bits (254), Expect = 3e-25
Identities = 37/131 (28%), Positives = 58/131 (44%), Gaps = 16/131 (12%)
Query: 7 ESPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIE 53
+PL LAA VN D +S L AA +VD A++L++ GAN +
Sbjct: 125 TTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD 184
Query: 54 EVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCV 113
N + E+PL LAA G + A +L++ AN + + P A H ++V +
Sbjct: 185 MQN---NREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRL 241
Query: 114 LLQKGAKINAH 124
L + + H
Sbjct: 242 LDLEHHHHHHH 252
Score = 92.9 bits (232), Expect = 4e-22
Identities = 28/113 (24%), Positives = 48/113 (42%), Gaps = 16/113 (14%)
Query: 87 NIEEVNDEGYTPLMEAAREG-------------HEEMVCVLLQKGAKINAHTEETQETAL 133
++ +G+TPLM A+ G ++ + +GA ++ T+ T ETAL
Sbjct: 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETAL 61
Query: 134 TLACCGGFLDVADFLLKNGANIELGAS---TPLMEAAQEGHLELVRYLLDSGA 183
LA D A LL+ A+ + + TPL A + + L+ + A
Sbjct: 62 HLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRA 114
Score = 60.6 bits (148), Expect = 8e-11
Identities = 22/99 (22%), Positives = 37/99 (37%), Gaps = 16/99 (16%)
Query: 7 ESPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIE 53
+S L AA + +M + E+PL LAA G + A +L++ AN +
Sbjct: 158 KSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRD 217
Query: 54 EVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVN 92
+ P +A H D+ LL + +
Sbjct: 218 ITD---HMDRLPRDIAQERMHHDIVRLLDLEHHHHHHHH 253
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit);
transcription factor, IKB/NFKB complex; 2.30A {Homo
sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Length = 236
Score = 148 bits (375), Expect = 5e-43
Identities = 45/207 (21%), Positives = 76/207 (36%), Gaps = 29/207 (14%)
Query: 7 ESPLTLAACGGH-----------------VNMPTDSFESPLTLAACGGHVDLALLLIERG 49
+S L LA +N + ++PL LA ++A L+ G
Sbjct: 9 DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAG 68
Query: 50 ANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGAN------IEEVNDEGYTPLMEAA 103
+ E + +PL LA G + +L + ++ N G+T L A+
Sbjct: 69 CDPELRD---FRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLAS 125
Query: 104 REGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGA---S 160
G+ +V +L+ GA +NA TAL LA D+ LLK GA++
Sbjct: 126 IHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGY 185
Query: 161 TPLMEAAQEGHLELVRYLLDSGAQEMQ 187
+P + + L + +Q
Sbjct: 186 SPYQLTWGRPSTRIQQQLGQLTLENLQ 212
Score = 107 bits (270), Expect = 9e-28
Identities = 26/131 (19%), Positives = 51/131 (38%), Gaps = 3/131 (2%)
Query: 16 GGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHV 75
+ + + L LA+ G++ + LL+ GA++ + + L LA +
Sbjct: 107 HSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQE--PCNGRTALHLAVDLQNP 164
Query: 76 DLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTL 135
DL LL++ GA++ V +GY+P + L Q + E+ E +
Sbjct: 165 DLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPES-EDEESY 223
Query: 136 ACCGGFLDVAD 146
F + +
Sbjct: 224 DTESEFTEFTE 234
Score = 92.6 bits (231), Expect = 3e-22
Identities = 26/111 (23%), Positives = 44/111 (39%), Gaps = 8/111 (7%)
Query: 89 EEVNDEGYTPLMEAAREGH----EEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDV 144
+++ ++G + L A E++ + A +N Q T L LA ++
Sbjct: 2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQ-TPLHLAVITNQPEI 60
Query: 145 ADFLLKNGANIELGA---STPLMEAAQEGHLELVRYLLDSGAQEMQTKHID 192
A+ LL G + EL +TPL A ++G L V L S +
Sbjct: 61 AEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILK 111
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin
repeat, signaling protein; NMR {Mus musculus} SCOP:
i.11.1.1
Length = 136
Score = 142 bits (362), Expect = 3e-42
Identities = 36/138 (26%), Positives = 60/138 (43%), Gaps = 7/138 (5%)
Query: 49 GANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHE 108
I + S ++ L AA G V+ L+E GA+ +N G P+ G
Sbjct: 2 SPGIHMLG---GSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSA 57
Query: 109 EMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGAS---TPLME 165
++ +LL GA+ N T + A GFLD L + GA +++ + P+
Sbjct: 58 QVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDL 117
Query: 166 AAQEGHLELVRYLLDSGA 183
A ++GH ++ RYL +
Sbjct: 118 AEEQGHRDIARYLHAATG 135
Score = 126 bits (320), Expect = 4e-36
Identities = 36/140 (25%), Positives = 62/140 (44%), Gaps = 6/140 (4%)
Query: 16 GGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHV 75
++M S ++ L AA G V+ L+E GA+ +N P+ + G
Sbjct: 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALN---RFGRRPIQVMMM-GSA 57
Query: 76 DLALLLIERGANIEEVNDEGYT-PLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALT 134
+A LL+ GA + T P+ +AAREG + + VL + GA+++ + +
Sbjct: 58 QVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGR-LPVD 116
Query: 135 LACCGGFLDVADFLLKNGAN 154
LA G D+A +L +
Sbjct: 117 LAEEQGHRDIARYLHAATGD 136
Score = 106 bits (267), Expect = 2e-28
Identities = 26/126 (20%), Positives = 45/126 (35%), Gaps = 16/126 (12%)
Query: 7 ESPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIE 53
++ L AA G N P+ + G +A LL+ GA
Sbjct: 13 DAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMG-SAQVAELLLLHGAEPN 71
Query: 54 EVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCV 113
+ + P+ AA G +D ++L GA ++ + G P+ A +GH ++
Sbjct: 72 CAD--PATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARY 129
Query: 114 LLQKGA 119
L
Sbjct: 130 LHAATG 135
Score = 46.7 bits (112), Expect = 9e-07
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 152 GANIELGAS---TPLMEAAQEGHLELVRYLLDSGAQ 184
I + L AA G +E VR LL++GA
Sbjct: 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGAD 37
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural
genomics of pathogenic protozoa consortium, SGPP, ANK
repeat; 2.90A {Leishmania major}
Length = 364
Score = 148 bits (376), Expect = 8e-42
Identities = 28/188 (14%), Positives = 56/188 (29%), Gaps = 23/188 (12%)
Query: 16 GGHVNMPTDSFESPLTLAACGGHVDLALLLIER-----GANIEEVNMPTDSFESPLTLAA 70
G + E+PL A + + L+++ ++ N S L A
Sbjct: 163 GASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYAN---KQGNSHLHWAI 219
Query: 71 CGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINA------- 123
D+A+ +E G ++ ++E PL + R + LLQK
Sbjct: 220 LINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHN 279
Query: 124 -----HTEETQETALTLACCGGFLDVADFLLKNGANIELGA---STPLMEAAQEGHLELV 175
+ A +V L + + + ++ ++ +
Sbjct: 280 GTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVK 339
Query: 176 RYLLDSGA 183
R L A
Sbjct: 340 RMKLAPSA 347
Score = 140 bits (356), Expect = 7e-39
Identities = 34/216 (15%), Positives = 76/216 (35%), Gaps = 40/216 (18%)
Query: 7 ESPLTLAACGGHV-----------NMPTDSFESPLTLAACGGHVDLALLLIERGANIEE- 54
+ L LA G V + P+ LA DL + L+E +
Sbjct: 54 CTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQM 113
Query: 55 -----------------VNMPTDSFESPLTLAACGG--HVDLALLLIERGANIEEVNDEG 95
++ ++ L G ++++ +L++ GA+ +
Sbjct: 114 PESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKAD 173
Query: 96 YTPLMEAAREGHEEMVCVLL-----QKGAKINAHTEETQETALTLACCGGFLDVADFLLK 150
TPLM A + E + +++ + +++ ++ + L A + DVA ++
Sbjct: 174 ETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGN-SHLHWAILINWEDVAMRFVE 232
Query: 151 NGANIELGA---STPLMEAAQEGHLELVRYLLDSGA 183
G ++ + + PL + + + L + LL
Sbjct: 233 MGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTD 268
Score = 135 bits (342), Expect = 8e-37
Identities = 40/191 (20%), Positives = 65/191 (34%), Gaps = 30/191 (15%)
Query: 19 VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLA 78
D + +AA G D LIE G + N + L LA G VD A
Sbjct: 13 RIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQN---RFGCTALHLACKFGCVDTA 69
Query: 79 LLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINA----------HTEET 128
L G + G P+ A ++V L++ + E
Sbjct: 70 KYLASVGEVHSLWH--GQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVN 127
Query: 129 Q----------ETALTLACCGG--FLDVADFLLKNGANIELGAS---TPLMEAAQEGHLE 173
+ +TAL G +L++ L++ GA+ TPLM A + + E
Sbjct: 128 EIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNRE 187
Query: 174 LVRYLLDSGAQ 184
+ ++D+
Sbjct: 188 ALDLMMDTVPS 198
Score = 122 bits (308), Expect = 4e-32
Identities = 26/163 (15%), Positives = 50/163 (30%), Gaps = 19/163 (11%)
Query: 44 LLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAA 103
+ N + + D + +AA G D LIE G + N G T L A
Sbjct: 5 MTDFPKLNRIKSD---DENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLAC 61
Query: 104 REGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGASTPL 163
+ G + L G + + + LA D+ L++ P
Sbjct: 62 KFGCVDTAKYLASVGEVHSL---WHGQKPIHLAVMANKTDLVVALVEGAKERG---QMPE 115
Query: 164 MEAAQEGHLELVRYLLDSGAQEMQT----------KHIDILEF 196
+ E+ + QT +++++++
Sbjct: 116 SLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKI 158
Score = 118 bits (298), Expect = 1e-30
Identities = 26/181 (14%), Positives = 51/181 (28%), Gaps = 35/181 (19%)
Query: 7 ESPLTLAACGGH------------------VNMPTDSFESPLTLAACGGHVDLALLLIER 48
E+PL A + ++ S L A D+A+ +E
Sbjct: 174 ETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEM 233
Query: 49 GANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVND-------------EG 95
G ++ + + PL L+ V L L+++
Sbjct: 234 GIDVNMED---NEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVW 290
Query: 96 YTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANI 155
+ AA +E++ +L +K ++ + T V L A +
Sbjct: 291 LDFVPAAADPSKQEVLQLLQEKLDEVVR-SLNTGAGGAVKRKKKAAPAVKRMKLAPSAPV 349
Query: 156 E 156
Sbjct: 350 R 350
Score = 113 bits (285), Expect = 9e-29
Identities = 20/151 (13%), Positives = 44/151 (29%), Gaps = 24/151 (15%)
Query: 9 PLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEE- 54
L A VNM + PL L+ V L L+++
Sbjct: 214 HLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQ 273
Query: 55 ---------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAARE 105
V + + AA ++ LL E+ + + G ++ ++
Sbjct: 274 ACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKK 333
Query: 106 GHEEMVCVLLQKGAKINAHTEETQETALTLA 136
+ + L A + + + + ++
Sbjct: 334 AAPAVKRMKLAPSAPVRTRSRS-RARSSAVS 363
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix,
ankyrin repeat, gene regulation/signalling protein/DNA
complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Length = 373
Score = 148 bits (375), Expect = 1e-41
Identities = 53/189 (28%), Positives = 82/189 (43%), Gaps = 20/189 (10%)
Query: 12 LAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAAC 71
A G VN +PL LA L L++ GA+ N S S L AA
Sbjct: 152 CIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYN---KSERSALHQAAA 208
Query: 72 GGHVDLALLLIE---RGANIEEVNDEGYTPLMEAAREGHEEMVCV---LLQKGAKINAHT 125
+ + ++ +IEE++ G T LM A + V L++KGAK++
Sbjct: 209 NRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDG 268
Query: 126 EETQE-------TALTLACCGGFLDVADFLL-KNGANIELG---ASTPLMEAAQEGHLEL 174
++ TAL A + + +L+ + G+N + TP+M AAQEG +E+
Sbjct: 269 AARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEV 328
Query: 175 VRYLLDSGA 183
V YL+ GA
Sbjct: 329 VMYLIQQGA 337
Score = 138 bits (349), Expect = 7e-38
Identities = 44/209 (21%), Positives = 81/209 (38%), Gaps = 35/209 (16%)
Query: 7 ESPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIE---RGA 50
+PL LA + S S L AA + + ++
Sbjct: 167 NTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKG 226
Query: 51 NIEEVNMPTDSFESPLTLAACGGH---VDLALLLIERGANI--------EEVNDEGYTPL 99
+IEE++ + + L + A V A LL+E+GA + + +G T L
Sbjct: 227 DIEELD---RNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTAL 283
Query: 100 MEAAREGHEEMVCVLL-QKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELG 158
AA+ + +V L+ +KG+ + E+ +T + LA G ++V +L++ GA++E
Sbjct: 284 HYAAQVSNMPIVKYLVGEKGSNKDKQDED-GKTPIMLAAQEGRIEVVMYLIQQGASVEAV 342
Query: 159 AS---TPLMEAAQEGHLELVRYLLDSGAQ 184
+ T A H +V +
Sbjct: 343 DATDHTARQLAQANNHHNIVDIFDRCRPE 371
Score = 132 bits (334), Expect = 9e-36
Identities = 38/181 (20%), Positives = 65/181 (35%), Gaps = 30/181 (16%)
Query: 29 PLTLAACGGHVDLALLLI--------ERGANIEEVNMPTDSFESPLTLAACGGHVDLALL 80
L A + + LI GA++ ++ +PL LA L
Sbjct: 128 VLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMD---CDENTPLMLAVLARRRRLVAY 184
Query: 81 LIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQK---GAKINAHTEETQETALTLAC 137
L++ GA+ N + L +AA M+ +L I TAL +
Sbjct: 185 LMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRN-GMTALMIVA 243
Query: 138 CGGFLD---VADFLLKNGANIELGAS-----------TPLMEAAQEGHLELVRYLL-DSG 182
D A L++ GA ++ + T L AAQ ++ +V+YL+ + G
Sbjct: 244 HNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKG 303
Query: 183 A 183
+
Sbjct: 304 S 304
Score = 120 bits (303), Expect = 3e-31
Identities = 41/175 (23%), Positives = 70/175 (40%), Gaps = 26/175 (14%)
Query: 7 ESPLTLAACGGH----------------VNMPTDSFESPLTLAACGGH---VDLALLLIE 47
S L AA + + + L + A V A LL+E
Sbjct: 200 RSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVE 259
Query: 48 RGANIEEVNMPTDSF-----ESPLTLAACGGHVDLALLLI-ERGANIEEVNDEGYTPLME 101
+GA ++ + L AA ++ + L+ E+G+N ++ +++G TP+M
Sbjct: 260 KGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIML 319
Query: 102 AAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIE 156
AA+EG E+V L+Q+GA + A TA LA ++ D + E
Sbjct: 320 AAQEGRIEVVMYLIQQGASVEAVDATDH-TARQLAQANNHHNIVDIFDRCRPERE 373
Score = 114 bits (288), Expect = 3e-29
Identities = 31/179 (17%), Positives = 52/179 (29%), Gaps = 26/179 (14%)
Query: 16 GGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHV 75
+ S + L A+ G++ ++ + P G+
Sbjct: 27 NRKNHQSITSSQHSLLEASYDGYIKRQRNELQHYSLY------------PNPQGYGNGND 74
Query: 76 DLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTL 135
L E E L A G + + ++ I T L
Sbjct: 75 FLGDFNHTNLQIPTEPEPESPIKLHTEA-AGSYAITEPITRESVNIIDPRHN--RTVLHW 131
Query: 136 ACCGGFLDVADFLLKNGAN--IELGA---------STPLMEAAQEGHLELVRYLLDSGA 183
+ ++ L+ + A I GA +TPLM A LV YL+ +GA
Sbjct: 132 IASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGA 190
Score = 90.4 bits (225), Expect = 1e-20
Identities = 21/158 (13%), Positives = 44/158 (27%), Gaps = 13/158 (8%)
Query: 38 HVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYT 97
+ + + +E + + S + L A+ G++ E+
Sbjct: 13 NASVWMPPMENEEKNRKNHQSITSSQHSLLEASYDGYIK---------RQRNELQHYSLY 63
Query: 98 PLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIEL 157
P + G++ + E+ L G + + + + NI
Sbjct: 64 PNPQGYGNGNDFLGDFNHTNLQIPTEPEPESP-IKLHTEAAGS-YAITEPITRESVNIID 121
Query: 158 GAS--TPLMEAAQEGHLELVRYLLDSGAQEMQTKHIDI 193
T L A E L+ A+E D+
Sbjct: 122 PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADV 159
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats,
A-helical domain, structural genomics, NPPSFA; 2.20A
{Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A
1ixv_A 1wg0_A
Length = 228
Score = 144 bits (365), Expect = 1e-41
Identities = 40/197 (20%), Positives = 75/197 (38%), Gaps = 24/197 (12%)
Query: 9 PLTLAACGGH--------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEE 54
PL A + PL + ++ L+ + N+
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 55 VNMPTDSFESPLTLAACGGHVDLALLLIER--GANIEEVNDEGYTPLMEAAREGHEEMVC 112
+ P DS +P +A G++++ L +R ++ ++ ++G T L A + E+
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 124
Query: 113 VLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANI-----ELGASTPLMEAA 167
L++ GA + + + L A G L + + L G + + G TPL A
Sbjct: 125 FLIENGASVRIKDKF-NQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQG-WTPLFHAL 182
Query: 168 QEGHLELVRYLLDS-GA 183
EGH + L++ GA
Sbjct: 183 AEGHGDAAVLLVEKYGA 199
Score = 121 bits (307), Expect = 3e-33
Identities = 41/193 (21%), Positives = 77/193 (39%), Gaps = 26/193 (13%)
Query: 9 PLTLAACGGHV----------------NMPTDSFESPLTLAACGGHVDLALLLIERGANI 52
PL + + P DS +P +A G++++ L +R
Sbjct: 39 PLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKP 98
Query: 53 EEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVC 112
+ +N T+ + L LA +++ LIE GA++ + PL AA G +++
Sbjct: 99 D-LNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIE 157
Query: 113 VLLQKG-AKINAHTEETQETALTLACCGGFLDVADFLL-KNGANIELGAS---TPLMEAA 167
+L G + +N ++ T L A G D A L+ K GA +L + A
Sbjct: 158 LLCGLGKSAVNWQDKQ-GWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL 216
Query: 168 QEGHLELVRYLLD 180
+ ++ ++ L+
Sbjct: 217 ---NEQVKKFFLN 226
Score = 87.9 bits (219), Expect = 2e-20
Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 8/96 (8%)
Query: 95 GYTPLMEAAREGH-EEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGA 153
PL +A E ++ +L K + + ++ L + ++ FLL
Sbjct: 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQD-GRIPLHWSVSFQAHEITSFLLSKME 60
Query: 154 NIELGAS------TPLMEAAQEGHLELVRYLLDSGA 183
N+ L TP A G+LE+V+ L D
Sbjct: 61 NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPL 96
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Length = 156
Score = 141 bits (358), Expect = 2e-41
Identities = 41/156 (26%), Positives = 68/156 (43%), Gaps = 10/156 (6%)
Query: 29 PLTLAACGGHVD-LALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGAN 87
L+ AA G V + LL + + +N ++ L + G +AL L+++GA+
Sbjct: 5 RLSGAAARGDVQEVRRLLHRELVHPDALN---RFGKTALQVMMFG-STAIALELLKQGAS 60
Query: 88 IEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADF 147
+ G +P+ +AAR G + + VL++ GA +N + LA G V F
Sbjct: 61 PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGT-GALPIHLAVQEGHTAVVSF 119
Query: 148 LLKNGANIELGA---STPLMEAAQEGHLELVRYLLD 180
L +++ TPL A Q G +LV L
Sbjct: 120 LAA-ESDLHRRDARGLTPLELALQRGAQDLVDILQG 154
Score = 91.7 bits (229), Expect = 1e-22
Identities = 26/120 (21%), Positives = 45/120 (37%), Gaps = 33/120 (27%)
Query: 65 PLTLAACGGHVD-LALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINA 123
L+ AA G V + LL + + +N G T L G + LL++GA N
Sbjct: 5 RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNV 63
Query: 124 HTEETQETALTLACCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLELVRYLLDSGA 183
+G ++P+ +AA+ G L+ ++ L++ GA
Sbjct: 64 QD------------------------TSG-------TSPVHDAARTGFLDTLKVLVEHGA 92
Score = 87.9 bits (219), Expect = 3e-21
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 4/100 (4%)
Query: 16 GGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHV 75
G N+ S SP+ AA G +D +L+E GA++ + + P+ LA GH
Sbjct: 58 GASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPD---GTGALPIHLAVQEGHT 114
Query: 76 DLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLL 115
+ L +++ + G TPL A + G +++V +L
Sbjct: 115 AVVSFLAA-ESDLHRRDARGLTPLELALQRGAQDLVDILQ 153
Score = 35.8 bits (84), Expect = 0.007
Identities = 8/24 (33%), Positives = 10/24 (41%), Gaps = 1/24 (4%)
Query: 161 TPLMEAAQEGHLELVRYLLDS-GA 183
L AA G ++ VR LL
Sbjct: 4 DRLSGAAARGDVQEVRRLLHRELV 27
Score = 31.6 bits (73), Expect = 0.19
Identities = 13/51 (25%), Positives = 18/51 (35%), Gaps = 12/51 (23%)
Query: 9 PLTLAACGGH------------VNMPTDSFESPLTLAACGGHVDLALLLIE 47
P+ LA GH ++ +PL LA G DL +L
Sbjct: 104 PIHLAVQEGHTAVVSFLAAESDLHRRDARGLTPLELALQRGAQDLVDILQG 154
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase,
cyclin dependent kinase inhibitory protein, CDK, cell
cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A
1dc2_A 2a5e_A
Length = 156
Score = 141 bits (357), Expect = 2e-41
Identities = 37/141 (26%), Positives = 56/141 (39%), Gaps = 9/141 (6%)
Query: 46 IERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAARE 105
+E A + L AA G V+ L+E GAN N G P+
Sbjct: 1 MEPAAGSS-----MEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM- 54
Query: 106 GHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGAS---TP 162
G + +LL GA+ N T + A GFLD L + GA +++ + P
Sbjct: 55 GSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLP 114
Query: 163 LMEAAQEGHLELVRYLLDSGA 183
+ A + GH ++ RYL +
Sbjct: 115 VDLAEELGHRDVARYLRAAAG 135
Score = 141 bits (357), Expect = 3e-41
Identities = 40/148 (27%), Positives = 60/148 (40%), Gaps = 8/148 (5%)
Query: 29 PLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANI 88
L AA G V+ L+E GAN N P+ + G +A LL+ GA
Sbjct: 15 WLATAAARGRVEEVRALLEAGANPNAPN---SYGRRPIQVMMMG-SARVAELLLLHGAEP 70
Query: 89 EEVNDEGYT-PLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADF 147
+ T P+ +AAREG + + VL + GA+++ + + LA G DVA +
Sbjct: 71 NCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGR-LPVDLAEELGHRDVARY 129
Query: 148 LLKNGANIELGASTPLMEAAQEGHLELV 175
L S A EG ++
Sbjct: 130 LRAAAGGTR--GSNHARIDAAEGPSDIP 155
Score = 117 bits (297), Expect = 2e-32
Identities = 30/151 (19%), Positives = 48/151 (31%), Gaps = 22/151 (14%)
Query: 9 PLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEV 55
L AA G N P P+ + G +A LL+ GA
Sbjct: 15 WLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMG-SARVAELLLLHGAEPNCA 73
Query: 56 NMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLL 115
+ + P+ AA G +D ++L GA ++ + G P+ A GH ++ L
Sbjct: 74 D--PATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLR 131
Query: 116 QKGAKINAHTEETQETALTLACCGGFLDVAD 146
+ G D+ D
Sbjct: 132 AAAGGTRG------SNHARIDAAEGPSDIPD 156
Score = 47.1 bits (113), Expect = 8e-07
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 149 LKNGANIEL-GASTPLMEAAQEGHLELVRYLLDSGAQ 184
++ A + ++ L AA G +E VR LL++GA
Sbjct: 1 MEPAAGSSMEPSADWLATAAARGRVEEVRALLEAGAN 37
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix,
SH3, ankyrin repeat, signaling protein, ANK repeat,
cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB:
3ehq_A
Length = 222
Score = 142 bits (361), Expect = 4e-41
Identities = 37/182 (20%), Positives = 69/182 (37%), Gaps = 16/182 (8%)
Query: 3 TDSFESPLTLAACGGH--------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEE 54
TD ++ G V +S ++PL AA G++ ++ +
Sbjct: 42 TDMSDTNWWKGTSKGRTGLIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNG 101
Query: 55 VNMPTDSFESPLTLAACGGHVDLA-LLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCV 113
++ + + L A GGH D+ +L + + + N G T L AA +G+ ++V +
Sbjct: 102 LD---KAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQL 158
Query: 114 LLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIEL---GASTPLMEAAQEG 170
LL KGA+ + E ++ A +A + A L ++ E
Sbjct: 159 LLAKGARTDLRNIE-KKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEH 217
Query: 171 HL 172
H
Sbjct: 218 HH 219
Score = 141 bits (358), Expect = 1e-40
Identities = 37/181 (20%), Positives = 67/181 (37%), Gaps = 13/181 (7%)
Query: 7 ESPLTLAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPL 66
+P L G + TD ++ G + + E +S ++PL
Sbjct: 26 RTPDELYIEEGDIIYITDMSDTNWWKGTSKGR-----TGLIPSNYVAEQA---ESIDNPL 77
Query: 67 TLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLL-QKGAKINAHT 125
AA G++ ++ + ++ G T L A GH+++V +L Q ++N
Sbjct: 78 HEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQN 137
Query: 126 EETQETALTLACCGGFLDVADFLLKNGANIELGAS---TPLMEAAQEGHLELVRYLLDSG 182
+ +TAL A G+ D+ LL GA +L A L++ +
Sbjct: 138 KL-GDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTD 196
Query: 183 A 183
A
Sbjct: 197 A 197
Score = 133 bits (338), Expect = 1e-37
Identities = 36/160 (22%), Positives = 56/160 (35%), Gaps = 15/160 (9%)
Query: 29 PLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANI 88
+ A L +I TD ++ G + +
Sbjct: 15 KVFRALYTFEPRTPDELYIEEGDI---IYITDMSDTNWWKGTSKGR-----TGLIPSNYV 66
Query: 89 EEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFL 148
E + PL EAA+ G+ + L +N + TAL AC GG D+ + L
Sbjct: 67 AEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKA-GSTALYWACHGGHKDIVEML 125
Query: 149 LKN-GANIE----LGASTPLMEAAQEGHLELVRYLLDSGA 183
+ LG T L AA +G+ ++V+ LL GA
Sbjct: 126 FTQPNIELNQQNKLG-DTALHAAAWKGYADIVQLLLAKGA 164
Score = 81.1 bits (201), Expect = 4e-18
Identities = 17/89 (19%), Positives = 26/89 (29%), Gaps = 3/89 (3%)
Query: 95 GYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGAN 154
G + A L + I T+ +T G +
Sbjct: 12 GQVKVFRALYTFEPRTPDELYIEEGDIIYITDM-SDTNWWKGTSKGRTGLIPSNYVAEQA 70
Query: 155 IELGASTPLMEAAQEGHLELVRYLLDSGA 183
PL EAA+ G+L +R LD+
Sbjct: 71 ES--IDNPLHEAAKRGNLSWLRECLDNRV 97
>1awc_B Protein (GA binding protein beta 1); complex (transcription
regulation/DNA), DNA-binding, nuclear protein, ETS
domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus
musculus} SCOP: d.211.1.1
Length = 153
Score = 139 bits (354), Expect = 7e-41
Identities = 49/154 (31%), Positives = 69/154 (44%), Gaps = 10/154 (6%)
Query: 29 PLTLAACGGHVDLALLLIERGANIEEVNMPTDSF-ESPLTLAACGGHVDLALLLIERGAN 87
L AA G D +L+ GA TD SPL LAA GH +L+ G +
Sbjct: 5 KLLEAARAGQDDEVRILMANGAPFT-----TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS 59
Query: 88 IEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADF 147
+ TPL AA EGH +V VLL+ GA +NA + + TAL A +V +
Sbjct: 60 RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNA-KDMLKMTALHWATEHNHQEVVEL 118
Query: 148 LLKNGANIELGA---STPLMEAAQEGHLELVRYL 178
L+K GA++ + T + G+ +L L
Sbjct: 119 LIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 122 bits (308), Expect = 4e-34
Identities = 40/123 (32%), Positives = 58/123 (47%), Gaps = 7/123 (5%)
Query: 65 PLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAH 124
L AA G D +L+ GA + G +PL AA+ GH VLL+ G +A
Sbjct: 5 KLLEAARAGQDDEVRILMANGAPFTT-DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR 63
Query: 125 TEETQETALTLACCGGFLDVADFLLKNGANIE----LGASTPLMEAAQEGHLELVRYLLD 180
T+ T L +A G ++ + LLK+GA++ L T L A + H E+V L+
Sbjct: 64 TKV-DRTPLHMAASEGHANIVEVLLKHGADVNAKDMLK-MTALHWATEHNHQEVVELLIK 121
Query: 181 SGA 183
GA
Sbjct: 122 YGA 124
Score = 92.1 bits (230), Expect = 8e-23
Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 7/94 (7%)
Query: 94 EGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGA 153
+ L+EAAR G ++ V +L+ GA + + L LA G + LL+ G
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGAPFTT--DWLGTSPLHLAAQYGHFSTTEVLLRAGV 58
Query: 154 NI----ELGASTPLMEAAQEGHLELVRYLLDSGA 183
+ ++ TPL AA EGH +V LL GA
Sbjct: 59 SRDARTKVD-RTPLHMAASEGHANIVEVLLKHGA 91
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP:
k.37.1.1
Length = 126
Score = 137 bits (349), Expect = 2e-40
Identities = 54/122 (44%), Positives = 75/122 (61%), Gaps = 4/122 (3%)
Query: 65 PLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAH 124
PL LAA GH+++ LL+E GA++ + G TPL AAR GH E+V +LL+ GA +NA
Sbjct: 5 PLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK 64
Query: 125 TEETQETALTLACCGGFLDVADFLLKNGANIELGA---STPLMEAAQEGHLELVRYLLDS 181
+ T L LA G L+V LL+ GA++ TPL AA+ GHLE+V+ LL++
Sbjct: 65 DKN-GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 123
Query: 182 GA 183
GA
Sbjct: 124 GA 125
Score = 106 bits (268), Expect = 1e-28
Identities = 48/124 (38%), Positives = 69/124 (55%), Gaps = 16/124 (12%)
Query: 9 PLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEV 55
PL LAA GH VN + +PL LAA GH+++ LL+E GA++
Sbjct: 5 PLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK 64
Query: 56 NMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLL 115
+ + +PL LAA GH+++ LL+E GA++ + G TPL AAR GH E+V +LL
Sbjct: 65 D---KNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 121
Query: 116 QKGA 119
+ GA
Sbjct: 122 EAGA 125
Score = 104 bits (262), Expect = 9e-28
Identities = 42/92 (45%), Positives = 56/92 (60%), Gaps = 4/92 (4%)
Query: 95 GYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGAN 154
G TPL AAR GH E+V +LL+ GA +NA + T L LA G L+V LL+ GA+
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN-GRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 155 IELGA---STPLMEAAQEGHLELVRYLLDSGA 183
+ TPL AA+ GHLE+V+ LL++GA
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate
recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo
sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A
3twq_A 3twu_A 2y0i_S*
Length = 165
Score = 137 bits (347), Expect = 1e-39
Identities = 40/161 (24%), Positives = 67/161 (41%), Gaps = 9/161 (5%)
Query: 27 ESPLTLAACGGHVDLALLLIER-GANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERG 85
+ L AA G V+ L N ++ +PL AA V + L++ G
Sbjct: 9 DRQLLEAAKAGDVETVKKLCTVQSVNCRDIE---GRQSTPLHFAAGYNRVSVVEYLLQHG 65
Query: 86 ANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVA 145
A++ + G PL A GH E+ +L++ GA +N + T L A G ++
Sbjct: 66 ADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLW-KFTPLHEAAAKGKYEIC 124
Query: 146 DFLLKNGANIELGA---STPLMEAAQEGHLELVRYLLDSGA 183
LL++GA+ +TPL ++G ++ L A
Sbjct: 125 KLLLQHGADPTKKNRDGNTPLD-LVKDGDTDIQDLLRGDAA 164
Score = 122 bits (310), Expect = 3e-34
Identities = 44/139 (31%), Positives = 60/139 (43%), Gaps = 11/139 (7%)
Query: 49 GANIEEVNMPTDSFESPLTLAACGGHVDLALLLIER-GANIEEVNDEGYTPLMEAAREGH 107
GA + L AA G V+ L N ++ TPL AA
Sbjct: 1 GAMGNSEA------DRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNR 54
Query: 108 EEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIE---LGASTPLM 164
+V LLQ GA ++A + L AC G +VA+ L+K+GA + L TPL
Sbjct: 55 VSVVEYLLQHGADVHAKDKG-GLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLH 113
Query: 165 EAAQEGHLELVRYLLDSGA 183
EAA +G E+ + LL GA
Sbjct: 114 EAAAKGKYEICKLLLQHGA 132
Score = 119 bits (300), Expect = 7e-33
Identities = 43/161 (26%), Positives = 64/161 (39%), Gaps = 19/161 (11%)
Query: 7 ESPLTLAACGGH--------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANI 52
+ L AA G +PL AA V + L++ GA++
Sbjct: 9 DRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV 68
Query: 53 EEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVC 112
+ PL A GH ++A LL++ GA + + +TPL EAA +G E+
Sbjct: 69 HAKD---KGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICK 125
Query: 113 VLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGA 153
+LLQ GA + T L L G D+ D L + A
Sbjct: 126 LLLQHGADPTKKNRD-GNTPLDLVKD-GDTDIQDLLRGDAA 164
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor,
cytoplasm, phosphorylation, P53 binding protein, ANK
repeat, SH3 domain; 2.10A {Homo sapiens}
Length = 229
Score = 134 bits (340), Expect = 6e-38
Identities = 28/146 (19%), Positives = 55/146 (37%), Gaps = 7/146 (4%)
Query: 44 LLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAA 103
++ + + + + L AA G +++ ++ + + N+EG T L A
Sbjct: 3 SVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAI 62
Query: 104 REGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGAS--- 160
+ +V L+ GA +N+ T L A + L+++GA I
Sbjct: 63 CGANYSIVDFLITAGANVNSPDSH-GWTPLHCAASCNDTVICMALVQHGAAIFATTLSDG 121
Query: 161 -TPLMEAA--QEGHLELVRYLLDSGA 183
T + +EG+ + YL D
Sbjct: 122 ATAFEKCDPYREGYADCATYLADVEQ 147
Score = 123 bits (311), Expect = 1e-33
Identities = 37/193 (19%), Positives = 60/193 (31%), Gaps = 29/193 (15%)
Query: 9 PLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEV 55
L AA G + P + + L A CG + + LI GAN+
Sbjct: 24 LLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSP 83
Query: 56 NMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVND-EGYTPLMEAA--REGHEEMVC 112
+ +PL AA + + L++ GA I +G T + REG+ +
Sbjct: 84 D---SHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCAT 140
Query: 113 VLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGA-----STPLMEAA 167
L + AL ++ + G ++ + T AA
Sbjct: 141 YLADVEQSMGL-MNSGAVYALWDYSAEFGDEL---SFREGESVTVLRRDGPEETDWWWAA 196
Query: 168 QEGHLELV-RYLL 179
G V R
Sbjct: 197 LHGQEGYVPRNYF 209
Score = 73.1 bits (180), Expect = 3e-15
Identities = 19/139 (13%), Positives = 34/139 (24%), Gaps = 21/139 (15%)
Query: 9 PLTLAACGGH-------------VNMPTDSF-ESPLTLAACG--GHVDLALLLIERGANI 52
PL AA + T S + G+ D A L + ++
Sbjct: 90 PLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSM 149
Query: 53 EEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVC 112
+N L + +L + + T AA G E V
Sbjct: 150 GLMN---SGAVYALWDYSAEFGDEL-SFREGESVTVLRRDGPEETDWWWAALHGQEGYVP 205
Query: 113 V-LLQKGAKINAHTEETQE 130
++ + +
Sbjct: 206 RNYFGLFPRVKPQRSKVKH 224
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6,
ankyrin reapeat, ANK RE calcium channel, calcium
transport, calmodulin-binding; 1.70A {Mus musculus}
Length = 232
Score = 134 bits (340), Expect = 6e-38
Identities = 50/219 (22%), Positives = 82/219 (37%), Gaps = 43/219 (19%)
Query: 7 ESPLTLAACGGH--------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANI 52
ESPL LAA V+ E+ L +AA +++ A++L+E +
Sbjct: 4 ESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPEL 63
Query: 53 --EEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVND-------------EGYT 97
E + ++ L +A +V+L L+ RGA++ G
Sbjct: 64 VFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEH 123
Query: 98 PLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVA----DFLLKNGA 153
PL AA G EE+V +L++ GA I A T L + A + LL
Sbjct: 124 PLSFAACVGSEEIVRLLIEHGADIRAQDSL-GNTVLHILILQPNKTFACQMYNLLLSYDG 182
Query: 154 NIELGAS---------TPLMEAAQEGHLELVRYLLDSGA 183
L + TP A EG++ + ++L+
Sbjct: 183 GDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRK 221
Score = 118 bits (297), Expect = 1e-31
Identities = 39/186 (20%), Positives = 68/186 (36%), Gaps = 37/186 (19%)
Query: 7 ESPLTLAACGGH------------------VNMPTDSFESPLTLAACGGHVDLALLLIER 48
E+ L +AA + + ++ L +A +V+L L+ R
Sbjct: 38 ETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLAR 97
Query: 49 GANIEE----------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTP 98
GA++ + E PL+ AAC G ++ LLIE GA+I + G T
Sbjct: 98 GASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTV 157
Query: 99 LMEAAREGHEEMVC----VLLQKGAKINAHTEETQ-----ETALTLACCGGFLDVADFLL 149
L + ++ C +LL + + E T LA G + + L+
Sbjct: 158 LHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLM 217
Query: 150 KNGANI 155
+ +I
Sbjct: 218 QKRKHI 223
Score = 93.4 bits (233), Expect = 2e-22
Identities = 31/107 (28%), Positives = 44/107 (41%), Gaps = 13/107 (12%)
Query: 27 ESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLAL----LLI 82
E PL+ AAC G ++ LLIE GA+I + + L + + A LL+
Sbjct: 122 EHPLSFAACVGSEEIVRLLIEHGADIRAQD---SLGNTVLHILILQPNKTFACQMYNLLL 178
Query: 83 ERGANIEE------VNDEGYTPLMEAAREGHEEMVCVLLQKGAKINA 123
N++G TP A EG+ M L+QK I A
Sbjct: 179 SYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHIAA 225
Score = 85.7 bits (213), Expect = 9e-20
Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 10/98 (10%)
Query: 95 GYTPLMEAAREGHEEMVCVLL-QKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGA 153
+PL+ AA+E + + LL +G +++ ETAL +A L+ A L++
Sbjct: 3 WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAM-GETALHIAALYDNLEAAMVLMEAAP 61
Query: 154 NIELGAS--------TPLMEAAQEGHLELVRYLLDSGA 183
+ T L A ++ LVR LL GA
Sbjct: 62 ELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGA 99
Score = 62.2 bits (152), Expect = 2e-11
Identities = 17/110 (15%), Positives = 34/110 (30%), Gaps = 20/110 (18%)
Query: 7 ESPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLAL----LLIERG 49
E PL+ AAC G + + L + + A LL+
Sbjct: 122 EHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYD 181
Query: 50 ANIEEVNMPTDSFES---PLTLAACGGHVDLALLLIERGANIEEVNDEGY 96
++ P LA G++ + L+++ +I + +
Sbjct: 182 GGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHIAAAHHHHH 231
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center F or structural
genomics, MCSG; 1.77A {Leptotrichia buccalis}
Length = 186
Score = 132 bits (333), Expect = 2e-37
Identities = 32/175 (18%), Positives = 63/175 (36%), Gaps = 17/175 (9%)
Query: 25 SFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIER 84
S ++ AA G + L L E+G +E + ++ L +++ LI +
Sbjct: 5 SEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINK 64
Query: 85 GANIEEVNDEGYTPLMEAAREGHE------EMVCVLLQKGAKINAHTEETQETALTLACC 138
GA+I+ EG T + G E+ + L+KGA I A + + +
Sbjct: 65 GADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKP-YKIVVFKNIF 123
Query: 139 GGFLDVAD-------FLLKNGANIELGAS---TPLMEAAQEGHLELVRYLLDSGA 183
F+D + ++G + + T L + ++ + D
Sbjct: 124 NYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIK 178
Score = 110 bits (278), Expect = 2e-29
Identities = 24/182 (13%), Positives = 50/182 (27%), Gaps = 33/182 (18%)
Query: 5 SFESPLTLAACGGHV----------------NMPTDSFESPLTLAACGGHVDLALLLIER 48
S ++ AA G + ++ L +++ LI +
Sbjct: 5 SEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINK 64
Query: 49 GANIEEVNMPTDSFESPLTLAACGGHVD------LALLLIERGANIEEVNDEGYTPLMEA 102
GA+I+ + GG D L + +E+GA+I + + +
Sbjct: 65 GADIKSRT---KEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKN 121
Query: 103 AREGHEEMV-------CVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANI 155
+ + Q G ++ ++ TAL +
Sbjct: 122 IFNYFVDENEMIPLYKLIFSQSGLQLLI-KDKWGLTALEFVKRCQKPIALKMMEDYIKKY 180
Query: 156 EL 157
L
Sbjct: 181 NL 182
Score = 61.2 bits (149), Expect = 2e-11
Identities = 7/113 (6%), Positives = 21/113 (18%), Gaps = 29/113 (25%)
Query: 7 ESPLTLAACGGH-------------------VNMPTDSFESPLTLAACGGHVDLA----- 42
+ GG + ++ + VD
Sbjct: 76 TTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPL 135
Query: 43 --LLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVND 93
L+ + G + + + L ++ + +
Sbjct: 136 YKLIFSQSGLQLLIKD---KWGLTALEFVKRCQKPIALKMMEDYIKKYNLKEN 185
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat,
helix, extended loop, four repeat, PR ANK repeat,
disease mutation, metal-binding; 2.00A {Homo sapiens}
SCOP: k.37.1.1
Length = 137
Score = 128 bits (325), Expect = 8e-37
Identities = 34/142 (23%), Positives = 60/142 (42%), Gaps = 12/142 (8%)
Query: 49 GANIEEVNMPTDSF-ESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGH 107
G + T+ E+ L +A+ G + L++ G++ + G+TPL EA GH
Sbjct: 1 GIDPF-----TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGH 55
Query: 108 EEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIEL----GASTPL 163
++V +LLQ A +N + ++ L A G +D+ LL GA+ G P+
Sbjct: 56 LKVVELLLQHKALVNTTGYQ-NDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFG-LRPV 113
Query: 164 MEAAQEGHLELVRYLLDSGAQE 185
E L+ + +
Sbjct: 114 DYTDDESMKSLLLLPEKNESSS 135
Score = 100 bits (252), Expect = 4e-26
Identities = 34/130 (26%), Positives = 56/130 (43%), Gaps = 17/130 (13%)
Query: 7 ESPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIE 53
E+ L +A+ G N+ + +PL A GH+ + LL++ A +
Sbjct: 11 ETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVN 70
Query: 54 EVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCV 113
+SPL AA GHVD+ LL+ GA+ VN G P+ E + ++ +
Sbjct: 71 TTG---YQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLL-L 126
Query: 114 LLQKGAKINA 123
L +K +A
Sbjct: 127 LPEKNESSSA 136
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein,
human epidermal growth factor receptor 2, de novo
protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G
2v4h_C
Length = 136
Score = 124 bits (313), Expect = 5e-35
Identities = 42/139 (30%), Positives = 65/139 (46%), Gaps = 16/139 (11%)
Query: 45 LIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAR 104
G+++ + L AA G D +L+ GA++ ++ G TPL A
Sbjct: 7 HHHHGSDLGK----------KLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATA 56
Query: 105 EGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANI----ELGAS 160
GH E+V VLL+ GA +NA T L LA G L++A+ LLK+GA++ + G
Sbjct: 57 HGHLEIVEVLLKNGADVNAVDAI-GFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFG-K 114
Query: 161 TPLMEAAQEGHLELVRYLL 179
T + G+ +L L
Sbjct: 115 TAFDISIGNGNEDLAEILQ 133
Score = 95.5 bits (239), Expect = 2e-24
Identities = 41/105 (39%), Positives = 58/105 (55%), Gaps = 7/105 (6%)
Query: 84 RGANIEEVND-EGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFL 142
RG++ + + L+EAAR G ++ V +L+ GA +NA E T L LA G L
Sbjct: 2 RGSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEY-GLTPLYLATAHGHL 60
Query: 143 DVADFLLKNGANI----ELGASTPLMEAAQEGHLELVRYLLDSGA 183
++ + LLKNGA++ +G TPL AA GHLE+ LL GA
Sbjct: 61 EIVEVLLKNGADVNAVDAIG-FTPLHLAAFIGHLEIAEVLLKHGA 104
Score = 90.5 bits (226), Expect = 2e-22
Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 16/120 (13%)
Query: 9 PLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEV 55
L AA G VN + +PL LA GH+++ +L++ GA++ V
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAV 76
Query: 56 NMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLL 115
+ +PL LAA GH+++A +L++ GA++ + G T + G+E++ +L
Sbjct: 77 D---AIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQ 133
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping,
inhibition, prote binding, actin capping, actin-binding,
cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A
2kxp_C 2myo_A
Length = 123
Score = 122 bits (310), Expect = 8e-35
Identities = 29/117 (24%), Positives = 46/117 (39%), Gaps = 4/117 (3%)
Query: 63 ESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKIN 122
+ A G +D + +G ++ + G PL AA G E++ LL KGA IN
Sbjct: 8 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN 67
Query: 123 AHTEETQETALTLACCGGFLDVADFLLKNGANIELGA---STPLMEAAQEGHLELVR 176
A ++ T L A G + LL GA+ + T + L++
Sbjct: 68 A-PDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123
Score = 105 bits (264), Expect = 4e-28
Identities = 30/96 (31%), Positives = 42/96 (43%), Gaps = 4/96 (4%)
Query: 91 VNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLK 150
+ M A + G + V + KG +N E L A G L++ +FLL
Sbjct: 3 LGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEG-GRKPLHYAADCGQLEILEFLLL 61
Query: 151 NGANIELG---ASTPLMEAAQEGHLELVRYLLDSGA 183
GA+I TPL+ A EGH+ V+ LL GA
Sbjct: 62 KGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGA 97
Score = 93.2 bits (233), Expect = 1e-23
Identities = 25/118 (21%), Positives = 43/118 (36%), Gaps = 16/118 (13%)
Query: 7 ESPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIE 53
+ A G VN + PL AA G +++ L+ +GA+I
Sbjct: 8 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN 67
Query: 54 EVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMV 111
+ +PL A GHV LL+ +GA+ +G T + + ++
Sbjct: 68 APD---KHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALL 122
>2etb_A Transient receptor potential cation channel subfamily V member 2;
TRPV2, ankyrin repeat domain, transport protein; 1.65A
{Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Length = 256
Score = 124 bits (314), Expect = 6e-34
Identities = 40/211 (18%), Positives = 67/211 (31%), Gaps = 45/211 (21%)
Query: 27 ESPLTLAAC---GGHVDLALLLIERGANIEEVNMPTDSF--------ESPLTLAACGGHV 75
++ L A G + L++ + ++ S L +A +
Sbjct: 44 KTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSL 103
Query: 76 DLALLLIERGANIEEVNDE-------------GYTPLMEAAREGHEEMVCVLLQKG---A 119
LL+E GA++ G PL AA ++V LL+ A
Sbjct: 104 QCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPA 163
Query: 120 KINA---------H------TEETQETALTLACCGGFLDVADFLLKNGANIELGAS---T 161
+ A H + +AL + G L + L E+ T
Sbjct: 164 SLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLT 223
Query: 162 PLMEAAQEGHLELVRYLLDSGAQEMQTKHID 192
PL AA+EG +E+ R++L H
Sbjct: 224 PLKLAAKEGKIEIFRHILQREFSGAAAHHHH 254
Score = 101 bits (253), Expect = 3e-25
Identities = 33/206 (16%), Positives = 64/206 (31%), Gaps = 53/206 (25%)
Query: 33 AACGGHVDLALLLIERGAN-----IEEVNMPTDSFESPLTLAAC---GGHVDLALLLIER 84
G + L+E + + ++ L A G + L++
Sbjct: 9 VVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQI 68
Query: 85 G-----------ANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQ---- 129
A + +G++ L A + + V +L++ GA ++
Sbjct: 69 DKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKH 128
Query: 130 --------ETALTLACCGGFLDVADFLLKNG---ANIELGAS------------------ 160
E L+LA C DV +LL+N A++E S
Sbjct: 129 QGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPE 188
Query: 161 -TPLMEAAQEGHLELVRYLLDSGAQE 185
+ L+ +G L++ L + E
Sbjct: 189 NSALVIHMYDGLLQMGARLCPTVQLE 214
Score = 99.9 bits (249), Expect = 1e-24
Identities = 31/122 (25%), Positives = 45/122 (36%), Gaps = 16/122 (13%)
Query: 18 HVNMPTDSFESPLTLAACGGHVDLALLLIERG---ANIEE-------------VNMPTDS 61
H E PL+LAAC D+ L+E A++E +
Sbjct: 128 HQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSP 187
Query: 62 FESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKI 121
S L + G + + L E N +G TPL AA+EG E+ +LQ+
Sbjct: 188 ENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSG 247
Query: 122 NA 123
A
Sbjct: 248 AA 249
Score = 44.0 bits (104), Expect = 3e-05
Identities = 10/67 (14%), Positives = 21/67 (31%), Gaps = 13/67 (19%)
Query: 3 TDSFESPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERG 49
S L + G + +PL LAA G +++ +++R
Sbjct: 185 NSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQRE 244
Query: 50 ANIEEVN 56
+ +
Sbjct: 245 FSGAAAH 251
Score = 36.3 bits (84), Expect = 0.010
Identities = 17/98 (17%), Positives = 24/98 (24%), Gaps = 26/98 (26%)
Query: 97 TPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIE 156
L G E + LL E + + L G
Sbjct: 4 DRLFSVVSRGVPEELTGLL----------EYLRWNSKYLTDS---AYTEG---STG---- 43
Query: 157 LGASTPLMEAA---QEGHLELVRYLLDSGAQEMQTKHI 191
T LM+A Q+G + LL K +
Sbjct: 44 ---KTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPL 78
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6
ATPase, P-benzoyl-L-phenylalanine, PBPA, amber
suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A
2dwz_A* 1tr4_A 1uoh_A 1qym_A
Length = 231
Score = 123 bits (309), Expect = 1e-33
Identities = 44/160 (27%), Positives = 73/160 (45%), Gaps = 7/160 (4%)
Query: 28 SPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGAN 87
LA G +L ++ + + + L A GH ++ L++ G
Sbjct: 9 MICNLAYSGKLDELKERILADKSLATRTD---QDSRTALHWACSAGHTEIVEFLLQLGVP 65
Query: 88 IEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADF 147
+ + +D G++PL AA G +E+V LL KGA +NA + T L A ++A
Sbjct: 66 VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNA-VNQNGCTPLHYAASKNRHEIAVM 124
Query: 148 LLKNGANIELG---ASTPLMEAAQEGHLELVRYLLDSGAQ 184
LL+ GAN + +T + AA +G+L++V LL A
Sbjct: 125 LLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKAS 164
Score = 113 bits (285), Expect = 4e-30
Identities = 50/193 (25%), Positives = 80/193 (41%), Gaps = 20/193 (10%)
Query: 8 SPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEE 54
LA G + L A GH ++ L++ G + +
Sbjct: 9 MICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND 68
Query: 55 VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVL 114
+ D+ SPL +AA G ++ L+ +GA++ VN G TPL AA + E+ +L
Sbjct: 69 KD---DAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVML 125
Query: 115 LQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELG---ASTPLMEAAQEGH 171
L+ GA +A TA+ A G L + LL A+ + +TPL A E
Sbjct: 126 LEGGANPDAKDHY-DATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEER 184
Query: 172 LELVRYLLDSGAQ 184
+E ++L+ GA
Sbjct: 185 VEEAKFLVTQGAS 197
Score = 106 bits (267), Expect = 2e-27
Identities = 58/193 (30%), Positives = 88/193 (45%), Gaps = 22/193 (11%)
Query: 7 ESPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIE 53
+ L A GH VN D+ SPL +AA G ++ L+ +GA++
Sbjct: 41 RTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVN 100
Query: 54 EVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCV 113
VN + +PL AA ++A++L+E GAN + + T + AA +G+ +MV +
Sbjct: 101 AVN---QNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHI 157
Query: 114 LLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELG---ASTPLMEAAQEG 170
LL A N + T L LAC ++ A FL+ GA+I + TPL A G
Sbjct: 158 LLFYKASTNI-QDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK--G 214
Query: 171 HLELVRYLLDSGA 183
L L+ L G
Sbjct: 215 GLGLILKRLAEGE 227
Score = 93.4 bits (232), Expect = 2e-22
Identities = 40/144 (27%), Positives = 65/144 (45%), Gaps = 6/144 (4%)
Query: 12 LAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAAC 71
L G HVN + +PL AA ++A++L+E GAN + + + + AA
Sbjct: 92 LLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD---HYDATAMHRAAA 148
Query: 72 GGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQET 131
G++ + +L+ A+ + EG TPL A E E L+ +GA I +E ++T
Sbjct: 149 KGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKE-EKT 207
Query: 132 ALTLACCGGFLDVADFLLKNGANI 155
L +A G L + L G
Sbjct: 208 PLQVAK--GGLGLILKRLAEGEEA 229
Score = 79.9 bits (197), Expect = 1e-17
Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 4/96 (4%)
Query: 92 NDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKN 151
A +E+ +L + ++ TAL AC G ++ +FLL+
Sbjct: 4 CVSNIMICNLAYSGKLDELKERILADKSLATRTDQD-SRTALHWACSAGHTEIVEFLLQL 62
Query: 152 GANIELGAS---TPLMEAAQEGHLELVRYLLDSGAQ 184
G + +PL AA G E+V+ LL GA
Sbjct: 63 GVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAH 98
Score = 76.8 bits (189), Expect = 2e-16
Identities = 27/119 (22%), Positives = 50/119 (42%), Gaps = 5/119 (4%)
Query: 4 DSFESPLTLAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFE 63
+ E + L G + + + + AA G++ + +L+ A+ +
Sbjct: 117 NRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQD---TEGN 173
Query: 64 SPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKIN 122
+PL LA V+ A L+ +GA+I N E TPL A G ++ L +G + +
Sbjct: 174 TPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK--GGLGLILKRLAEGEEAS 230
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo
protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Length = 110
Score = 111 bits (280), Expect = 1e-30
Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 7/113 (6%)
Query: 69 AACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEET 128
+ H + L+ RG+++ + L+EAAR G ++ V +L+ GA + A +
Sbjct: 1 GSSHHHHHHSSGLVPRGSHM---GSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNG 57
Query: 129 QETALTLACCGGFLDVADFLLKNGANIELG---ASTPLMEAAQEGHLELVRYL 178
T L LA G L+V LL+ GA++ T + G+ +L L
Sbjct: 58 S-TPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 107 bits (269), Expect = 5e-29
Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 7/116 (6%)
Query: 33 AACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVN 92
+ H + L+ RG+++ L AA G D +L+ GA++ +
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMGSDL------GKKLLEAARAGQDDEVRILMANGADVAAKD 54
Query: 93 DEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFL 148
G TPL AAR GH E+V +LL+ GA + A + + TA ++ G D+A+ L
Sbjct: 55 KNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGK-TAFDISIDNGNEDLAEIL 109
Score = 81.5 bits (202), Expect = 2e-19
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 29 PLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANI 88
L AA G D +L+ GA++ + + +PL LAA GH+++ LL+E GA++
Sbjct: 27 KLLEAARAGQDDEVRILMANGADVAAKD---KNGSTPLHLAARNGHLEVVKLLLEAGADV 83
Query: 89 EEVNDEGYTPLMEAAREGHEEMVCVL 114
+ G T + G+E++ +L
Sbjct: 84 XAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 63.0 bits (154), Expect = 9e-13
Identities = 12/48 (25%), Positives = 22/48 (45%)
Query: 136 ACCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLELVRYLLDSGA 183
+ L+ G+++ L+EAA+ G + VR L+ +GA
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMGSDLGKKLLEAARAGQDDEVRILMANGA 48
Score = 49.1 bits (118), Expect = 7e-08
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 16/86 (18%)
Query: 9 PLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEV 55
L AA G V + +PL LAA GH+++ LL+E GA++
Sbjct: 27 KLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQ 86
Query: 56 NMPTDSFESPLTLAACGGHVDLALLL 81
+ ++ ++ G+ DLA +L
Sbjct: 87 D---KFGKTAFDISIDNGNEDLAEIL 109
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1,
ankyrin repeat domain, transport protein; HET: ATP;
2.70A {Rattus norvegicus} PDB: 2nyj_A*
Length = 273
Score = 114 bits (286), Expect = 8e-30
Identities = 36/174 (20%), Positives = 62/174 (35%), Gaps = 33/174 (18%)
Query: 27 ESPLTLAACGGHVDLALLLIERGANIEE-----------VNMPTDSFESPLTLAACGGHV 75
++ L +A ++ L LL+E GA+++ E PL+LAAC +
Sbjct: 102 QTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQL 161
Query: 76 DLALLLIERG---ANIEEVNDEGYTPLMEAAREGHEE---------MVCVLLQKGAKINA 123
+ L++ A+I + G T L M +L GAK++
Sbjct: 162 AIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHP 221
Query: 124 HTEETQE------TALTLACCGGFLDVADFLLKNGANIELGASTPLMEAAQEGH 171
+ + T L LA G + V ++L+ + AA H
Sbjct: 222 TLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEP----ECRHAAAHHHH 271
Score = 102 bits (255), Expect = 2e-25
Identities = 33/204 (16%), Positives = 60/204 (29%), Gaps = 48/204 (23%)
Query: 9 PLTLAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTL 68
+ A + + +R + E + ++ ++ L
Sbjct: 16 SIFDAVAQSNC-------------QELESLLPFLQRSKKRLTDSEFKD--PETGKTCLLK 60
Query: 69 AAC---GGHVDLALLLIERGANIEEV-----------NDEGYTPLMEAAREGHEEMVCVL 114
A G D LL++ + + +G T L A + +V +L
Sbjct: 61 AMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLL 120
Query: 115 LQKGAKINAHTEETQ-------------ETALTLACCGGFLDVADFLLKNG---ANIELG 158
++ GA + A E L+LA C L + FLL+N A+I
Sbjct: 121 VENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISAR 180
Query: 159 AS---TPLMEAAQEGHLELVRYLL 179
S T L + +
Sbjct: 181 DSVGNTVLHALVEVADNTVDNTKF 204
Score = 75.2 bits (185), Expect = 9e-16
Identities = 21/123 (17%), Positives = 37/123 (30%), Gaps = 24/123 (19%)
Query: 85 GANIEEVNDEGYTPLMEAAREGHEEMVCVLLQ-------KGAKINAHTEETQETALTLAC 137
A + + +A + + + + LL + ET +T L A
Sbjct: 3 SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAM 62
Query: 138 C---GGFLDVADFLLKNGANIELGA--------------STPLMEAAQEGHLELVRYLLD 180
G D LL + T L A + ++ LV L++
Sbjct: 63 LNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVE 122
Query: 181 SGA 183
+GA
Sbjct: 123 NGA 125
Score = 66.3 bits (162), Expect = 1e-12
Identities = 20/131 (15%), Positives = 36/131 (27%), Gaps = 36/131 (27%)
Query: 7 ESPLTLAACGGH----------------VNMPTDSFESPLTLAACGGHVDLAL------- 43
E PL+LAAC ++ + L +
Sbjct: 149 ELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSM 208
Query: 44 --LLIERGANIEE----VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYT 97
++ GA + + +PL LAA G + + +++R +
Sbjct: 209 YNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIH-------EPE 261
Query: 98 PLMEAAREGHE 108
AA H
Sbjct: 262 CRHAAAHHHHH 272
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics,
PSI, protein structure initiative; 2.80A {Legionella
pneumophila} SCOP: a.118.24.1
Length = 376
Score = 116 bits (291), Expect = 1e-29
Identities = 27/154 (17%), Positives = 46/154 (29%), Gaps = 14/154 (9%)
Query: 37 GHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGY 96
L ++G E + + C +D LL+ ++ + E Y
Sbjct: 77 NAKQLWSDAHKKGIKSEVICFV-------AAITGCSSALDTLCLLLTSDEIVKVIQAENY 129
Query: 97 TPLMEAAREGHEEMVCVLLQKGAKINAHTEETQ-ETALTLACCGGFLDVADFLLKNGANI 155
AA GH ++ L + + + A LA G L V + L +
Sbjct: 130 QAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTE 189
Query: 156 EL------GASTPLMEAAQEGHLELVRYLLDSGA 183
A GH ++ +LLD
Sbjct: 190 ATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV 223
Score = 106 bits (267), Expect = 2e-26
Identities = 35/196 (17%), Positives = 61/196 (31%), Gaps = 21/196 (10%)
Query: 12 LAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAAC 71
L V + LAA GH+ + L E + +++ LAA
Sbjct: 114 LLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENY-HAFRLAAE 172
Query: 72 GGHVDLALLLIERGANIEE--VNDEGYTPLMEAARE-GHEEMVCVLLQKGAKINAHTEET 128
GH+ + L E + E Y AA GH ++ LL +
Sbjct: 173 NGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAY----- 227
Query: 129 QETALTLACCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLELV--------RYLLD 180
A G V F+ ++ ++ + +G +LV Y+L
Sbjct: 228 ---AEIHEFEYGEKYVNPFIARHVNRLKEM-HDAFKLSNPDGVFDLVTKSECLQGFYMLR 283
Query: 181 SGAQEMQTKHIDILEF 196
+ + +D + F
Sbjct: 284 NLIRRNDEVLLDDIRF 299
Score = 102 bits (256), Expect = 7e-25
Identities = 28/222 (12%), Positives = 58/222 (26%), Gaps = 52/222 (23%)
Query: 7 ESPLTLAACGGHVN---------------MPTDSFESPLTLAACGGHVDLALLLIERGAN 51
LAA GH++ M LAA GH+ + L E
Sbjct: 129 YQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPT 188
Query: 52 IEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMV 111
+ +++ + A GH ++ L++ + + G + +
Sbjct: 189 EATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAE-------IHEFEYGEKYVN 241
Query: 112 CVLLQKG------------AKINAHTEETQE-------TALTLACCGGFLDVADFL---- 148
+ + + + + + L + D +
Sbjct: 242 PFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLL 301
Query: 149 ----LKNGANIELG---ASTPLMEAAQEGHLELVRYLLDSGA 183
+K A A+ L A + G+ LL +
Sbjct: 302 SIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPS 343
Score = 101 bits (254), Expect = 1e-24
Identities = 28/220 (12%), Positives = 58/220 (26%), Gaps = 55/220 (25%)
Query: 9 PLTLAACGGHV----------------NMPTDSFESPLTLAACGGHVDLALLLIERGANI 52
LAA GH+ + +++ + A GH ++ L++ +
Sbjct: 166 AFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVML 225
Query: 53 EEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVND------------------- 93
+ G + + ++E++D
Sbjct: 226 AYAEI----------HEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSEC 275
Query: 94 -EGYTPLMEAAREGHEEMVCVL--------LQKGAKINAHTEETQETALTLACCGGFLDV 144
+G+ L R E ++ + ++ A L LA G
Sbjct: 276 LQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTAT-IPGDANELLRLALRLGNQGA 334
Query: 145 ADFLLKNGANIELGASTPLMEAAQEGHLELVRYLLDSGAQ 184
LL + + L + G L+L L+
Sbjct: 335 CALLLSIPSVLALTKANNYYINETGGRLDLRAVALEHHHH 374
Score = 95.0 bits (236), Expect = 4e-22
Identities = 23/152 (15%), Positives = 43/152 (28%), Gaps = 14/152 (9%)
Query: 37 GHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGY 96
+ + + + N+E+V L + A L ++
Sbjct: 45 SYKEAIHIFLPGTKNMEQVRQ--------LLCLYYAHYNRNAKQLWSDAHKKGIKSEVIC 96
Query: 97 TPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIE 156
+ +C+LL + E A LA G L V + L +
Sbjct: 97 FVAAITGCSSALDTLCLLLTSDEIVKVIQAE-NYQAFRLAAENGHLHVLNRLCELAPTEI 155
Query: 157 LGA-----STPLMEAAQEGHLELVRYLLDSGA 183
+ AA+ GHL ++ L +
Sbjct: 156 MAMIQAENYHAFRLAAENGHLHVLNRLCELAP 187
Score = 71.1 bits (174), Expect = 6e-14
Identities = 22/120 (18%), Positives = 42/120 (35%), Gaps = 17/120 (14%)
Query: 73 GHVDLALLLIERGANIEEVNDEGYTPLMEAARE-GHEEMVCVLLQKGAKINAHTEETQET 131
+ + + + N+E+V L A +++ +KG K E
Sbjct: 45 SYKEAIHIFLPGTKNMEQVR--QLLCLYYAHYNRNAKQLWSDAHKKGIKS--------EV 94
Query: 132 ALTLAC---CGGFLDVADFLLKNGANIELGAS---TPLMEAAQEGHLELVRYLLDSGAQE 185
+A C LD LL + +++ + AA+ GHL ++ L + E
Sbjct: 95 ICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTE 154
Score = 46.9 bits (111), Expect = 6e-06
Identities = 11/75 (14%), Positives = 21/75 (28%), Gaps = 6/75 (8%)
Query: 15 CGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGH 74
L LA G+ LL+ + + + + GG
Sbjct: 308 ALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTK------ANNYYINETGGR 361
Query: 75 VDLALLLIERGANIE 89
+DL + +E +
Sbjct: 362 LDLRAVALEHHHHHH 376
Score = 30.7 bits (69), Expect = 0.70
Identities = 9/55 (16%), Positives = 17/55 (30%), Gaps = 10/55 (18%)
Query: 9 PLTLAACGGHVNM----------PTDSFESPLTLAACGGHVDLALLLIERGANIE 53
L LA G+ + + + GG +DL + +E +
Sbjct: 322 LLRLALRLGNQGACALLLSIPSVLALTKANNYYINETGGRLDLRAVALEHHHHHH 376
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR
{Escherichia coli}
Length = 115
Score = 107 bits (271), Expect = 3e-29
Identities = 37/102 (36%), Positives = 51/102 (50%), Gaps = 6/102 (5%)
Query: 85 GANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDV 144
G + +G TPL AA+ GH E V LL KGA +NA + T L LA G ++
Sbjct: 1 GHMWG--SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNA-RSKDGNTPLHLAAKNGHAEI 57
Query: 145 ADFLLKNGANIELGA---STPLMEAAQEGHLELVRYLLDSGA 183
LL GA++ + +TP A + GH E+V+ L GA
Sbjct: 58 VKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGA 99
Score = 106 bits (267), Expect = 1e-28
Identities = 34/105 (32%), Positives = 54/105 (51%), Gaps = 4/105 (3%)
Query: 29 PLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANI 88
PL AA GH + L+ +GA++ + +PL LAA GH ++ LL+ +GA++
Sbjct: 12 PLHNAAKNGHAEEVKKLLSKGADVNARS---KDGNTPLHLAAKNGHAEIVKLLLAKGADV 68
Query: 89 EEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETAL 133
+ +G TP A + GH E+V +L KGA +NA +
Sbjct: 69 NARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWG-SSHHH 112
Score = 105 bits (265), Expect = 2e-28
Identities = 37/118 (31%), Positives = 57/118 (48%), Gaps = 9/118 (7%)
Query: 49 GANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHE 108
G + T PL AA GH + L+ +GA++ + +G TPL AA+ GH
Sbjct: 1 GHMWGSKDGNT-----PLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHA 55
Query: 109 EMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIEL---GASTPL 163
E+V +LL KGA +NA +++ T LA G ++ L GA++ G+S
Sbjct: 56 EIVKLLLAKGADVNARSKD-GNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112
Score = 79.0 bits (196), Expect = 2e-18
Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 16/104 (15%)
Query: 9 PLTLAACGGH-------------VNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEV 55
PL AA GH VN + +PL LAA GH ++ LL+ +GA++
Sbjct: 12 PLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNAR 71
Query: 56 NMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPL 99
+ +P LA GH ++ LL +GA++ +
Sbjct: 72 S---KDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP:
k.37.1.1
Length = 93
Score = 107 bits (269), Expect = 3e-29
Identities = 47/119 (39%), Positives = 63/119 (52%), Gaps = 31/119 (26%)
Query: 65 PLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAH 124
PL LAA GH+++ LL+E GA++ + G TPL AAR GH E+V +LL+ GA +NA
Sbjct: 5 PLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA- 63
Query: 125 TEETQETALTLACCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLELVRYLLDSGA 183
D KNG TPL AA+ GHLE+V+ LL++GA
Sbjct: 64 --------------------KD---KNG-------RTPLHLAARNGHLEVVKLLLEAGA 92
Score = 101 bits (255), Expect = 4e-27
Identities = 39/91 (42%), Positives = 58/91 (63%), Gaps = 3/91 (3%)
Query: 29 PLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANI 88
PL LAA GH+++ LL+E GA++ + + +PL LAA GH+++ LL+E GA++
Sbjct: 5 PLHLAARNGHLEVVKLLLEAGADVNAKD---KNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 89 EEVNDEGYTPLMEAAREGHEEMVCVLLQKGA 119
+ G TPL AAR GH E+V +LL+ GA
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin
repeats, ANK repeat, ION transport, ionic channel, R
transmembrane, transport; 2.30A {Gallus gallus} PDB:
3jxj_A
Length = 260
Score = 105 bits (263), Expect = 2e-26
Identities = 36/211 (17%), Positives = 65/211 (30%), Gaps = 48/211 (22%)
Query: 27 ESPLTLAA---CGGHVDLALLLIERGANIEE----VNMPTDSF----ESPLTLAACGGHV 75
++ L A G D +L++ +N P ++ L +A
Sbjct: 47 KTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCK 106
Query: 76 DLALLLIERGANIEEVND--------------EGYTPLMEAAREGHEEMVCVLLQKG--- 118
LL+E+GA++ G PL AA +V L + G
Sbjct: 107 HYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQ 166
Query: 119 AKINAHTEETQETALTLACCGG---------FLDVADFLLKNGANIELGAS--------- 160
A + + T L + D LL A + +
Sbjct: 167 ADLRR-QDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDG 225
Query: 161 -TPLMEAAQEGHLELVRYLLDSGAQEMQTKH 190
+PLM AA+ G + + ++++ + H
Sbjct: 226 LSPLMMAAKTGKIGIFQHIIRREIADAAAHH 256
Score = 102 bits (256), Expect = 1e-25
Identities = 35/195 (17%), Positives = 61/195 (31%), Gaps = 43/195 (22%)
Query: 33 AACGGHVDLALLLIERGANIEEVNMPTDSF-ESPLTLAA---CGGHVDLALLLIERG--- 85
+ G L L+ + + S ++ L A G D +L++
Sbjct: 16 GSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKT 75
Query: 86 --------ANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQ-------- 129
+ +V G T L A + V +L++KGA ++A
Sbjct: 76 GNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGG 135
Query: 130 -----ETALTLACCGGFLDVADFLLKNG---ANIELGAS---TPLMEAAQEGH------- 171
E L+LA C + +L +NG A++ S T L
Sbjct: 136 YFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTK 195
Query: 172 --LELVRYLLDSGAQ 184
++ LL A+
Sbjct: 196 FVTKMYDLLLIKCAK 210
Score = 63.3 bits (154), Expect = 1e-11
Identities = 19/111 (17%), Positives = 29/111 (26%), Gaps = 24/111 (21%)
Query: 97 TPLMEAAR----EGHEEMVCVLLQKGAKINAHTEETQ---ETALTLA---CCGGFLDVAD 146
L + +G E ++ LL ++ +T L A G D
Sbjct: 7 PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIP 66
Query: 147 FLLKNGANIELGAS--------------TPLMEAAQEGHLELVRYLLDSGA 183
LL T L A + V L++ GA
Sbjct: 67 ILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGA 117
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats,
cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP:
d.211.1.1
Length = 327
Score = 91.6 bits (227), Expect = 4e-21
Identities = 34/192 (17%), Positives = 65/192 (33%), Gaps = 28/192 (14%)
Query: 16 GGHVNMPTDSF-ESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGH 74
++N+P D +PL +++L L++ G+N + + ES L A +
Sbjct: 120 QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGD---NMGESCLVKAVKSVN 176
Query: 75 V----DLALLLIERGANIEEVNDEGYTPL------------MEAAREGHEEMVCVLLQKG 118
LL + + T L AA+ + ++ +++K
Sbjct: 177 NYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQ 236
Query: 119 AKINAHTEETQETALTLACCGGFLDVA---DFLLKNGANI----ELGASTPLMEAAQEGH 171
+ +E+ + D + G T L AA+ G+
Sbjct: 237 NRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNG-DTCLNIAARLGN 295
Query: 172 LELVRYLLDSGA 183
+ +V LLD GA
Sbjct: 296 ISIVDALLDYGA 307
Score = 60.0 bits (145), Expect = 3e-10
Identities = 16/93 (17%), Positives = 33/93 (35%), Gaps = 1/93 (1%)
Query: 12 LAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEE-VNMPTDSFESPLTLAA 70
+ + + G D L ++ I +N + ++ L +AA
Sbjct: 232 IVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAA 291
Query: 71 CGGHVDLALLLIERGANIEEVNDEGYTPLMEAA 103
G++ + L++ GA+ N G P+ A
Sbjct: 292 RLGNISIVDALLDYGADPFIANKSGLRPVDFGA 324
Score = 57.3 bits (138), Expect = 2e-09
Identities = 25/199 (12%), Positives = 50/199 (25%), Gaps = 42/199 (21%)
Query: 7 ESPLTLAACGGH-------------VNMPTDSFESPLTLAACGGHV----DLALLLIERG 49
+PL + + ES L A + LL
Sbjct: 132 NTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY 191
Query: 50 ANIEEVNMPTDSFESPLTLAACGGHVD------------LALLLIERGANIEEVNDEGYT 97
+ + + L + L ++++ +
Sbjct: 192 PCLILED---SMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKE 248
Query: 98 PLMEAA----REGHEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGA 153
++ E + + +NA +T L +A G + + D LL GA
Sbjct: 249 SKPNDKNGERKDSILENLDLKWIIANMLNAQDSN-GDTCLNIAARLGNISIVDALLDYGA 307
Query: 154 NIEL----GASTPLMEAAQ 168
+ + G P+ A
Sbjct: 308 DPFIANKSG-LRPVDFGAG 325
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing
protein 1; arfgap domain, zinc-binding module, GTPase
activ metal-binding, nitration; 2.30A {Homo sapiens}
Length = 368
Score = 69.4 bits (169), Expect = 2e-13
Identities = 32/184 (17%), Positives = 57/184 (30%), Gaps = 3/184 (1%)
Query: 8 SPLTLAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLT 67
S + + + + GA++ VN +PL
Sbjct: 182 SLRSKPEPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVN-GGQDNATPLI 240
Query: 68 LAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEE 127
A + L++ GAN+ + + G PL A GH + C+ L++GA + A +
Sbjct: 241 QATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGA-RDS 299
Query: 128 TQETALTLACCGGFLDVADFLLKNGANIELGA-STPLMEAAQEGHLELVRYLLDSGAQEM 186
LT+A D+ L A E + + D +
Sbjct: 300 EGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFSLMASDDPEKLS 359
Query: 187 QTKH 190
+ H
Sbjct: 360 RRSH 363
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium,
SGC, metal binding protein; 2.06A {Homo sapiens}
Length = 301
Score = 67.7 bits (165), Expect = 6e-13
Identities = 29/136 (21%), Positives = 49/136 (36%), Gaps = 7/136 (5%)
Query: 21 MPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDS---FESPLTLA---ACGGH 74
L A C + L G + + D+ E L LA A
Sbjct: 146 RRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQAS 205
Query: 75 VDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQETALT 134
+ L +I+ G +++ +G T L AA + + +LL+ A + E ETAL
Sbjct: 206 LPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGT-VNEAGETALD 264
Query: 135 LACCGGFLDVADFLLK 150
+A + + L +
Sbjct: 265 IARKKHHKECEELLEQ 280
Score = 65.0 bits (158), Expect = 5e-12
Identities = 30/123 (24%), Positives = 45/123 (36%), Gaps = 12/123 (9%)
Query: 3 TDSFESPLTLAACGGHVNMP------TDSFESPLTLA---ACGGHVDLALLLIERGANIE 53
S L A G P E L LA A + L +I+ G +
Sbjct: 161 NRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH-- 218
Query: 54 EVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCV 113
++ + L AA D LL++ A + VN+ G T L A ++ H+E +
Sbjct: 219 -LDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEEL 277
Query: 114 LLQ 116
L Q
Sbjct: 278 LEQ 280
Score = 60.8 bits (147), Expect = 1e-10
Identities = 29/150 (19%), Positives = 46/150 (30%), Gaps = 14/150 (9%)
Query: 57 MPTDSFESPLTLAACGGHVDLALLLIERGANI------EEVNDEGYTPLMEAAREGHE-- 108
L A C + L G + + L A + ++
Sbjct: 146 RRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQAS 205
Query: 109 -EMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGAS---TPLM 164
+V ++Q G ++A + TAL A D LLK A + T L
Sbjct: 206 LPLVDFIIQNGGHLDAKAADGN-TALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALD 264
Query: 165 EAAQEGHLELVRYLLDSGAQEM-QTKHIDI 193
A ++ H E L + A H+D
Sbjct: 265 IARKKHHKECEELLEQAQAGTFAFPLHVDY 294
Score = 53.5 bits (128), Expect = 3e-08
Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
Query: 12 LAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAAC 71
+ GGH++ + L AA D LL++ A + VN ++ E+ L +A
Sbjct: 212 IIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVN---EAGETALDIARK 268
Query: 72 GGHVDLALLLIERGAN 87
H + LL + A
Sbjct: 269 KHHKECEELLEQAQAG 284
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats,
metal binding protein; 2.10A {Mus musculus} SCOP:
d.211.1.1 g.45.1.1
Length = 278
Score = 66.9 bits (163), Expect = 7e-13
Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 6/97 (6%)
Query: 23 TDSFESPLTLAACGG---HVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLAL 79
+ E+ L LA + + L++ N ++ T + L + +
Sbjct: 166 HEPDETALHLAVRSVDRTSLHIVDFLVQNSGN---LDKQTGKGSTALHYCCLTDNAECLK 222
Query: 80 LLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQ 116
LL+ A+IE N+ G TPL A R HE +L Q
Sbjct: 223 LLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQ 259
Score = 66.2 bits (161), Expect = 2e-12
Identities = 20/99 (20%), Positives = 39/99 (39%), Gaps = 4/99 (4%)
Query: 59 TDSFESPLTLAACGG---HVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLL 115
+ E+ L LA + + L++ N+++ +G T L + E + +LL
Sbjct: 166 HEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLL 225
Query: 116 QKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGAN 154
+ A I E+ ET L +A + L + +
Sbjct: 226 RGKASIEI-ANESGETPLDIAKRLKHEHCEELLTQALSG 263
Score = 61.9 bits (150), Expect = 3e-11
Identities = 24/109 (22%), Positives = 40/109 (36%), Gaps = 8/109 (7%)
Query: 92 NDEGYTPLMEAAREG---HEEMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFL 148
++ T L A R +V L+Q ++ T + TAL C + L
Sbjct: 166 HEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGK-GSTALHYCCLTDNAECLKLL 224
Query: 149 LKNGANIELGAS---TPLMEAAQEGHLELVRYLLDSGAQEM-QTKHIDI 193
L+ A+IE+ TPL A + H L + + H++
Sbjct: 225 LRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRFNSHVHVEY 273
Score = 51.5 bits (123), Expect = 1e-07
Identities = 23/94 (24%), Positives = 35/94 (37%), Gaps = 11/94 (11%)
Query: 101 EAAREGHEEMVCVLLQKGAKIN-----AHTEETQETALTLACCGG---FLDVADFLLKNG 152
EA + + G + A+ E ETAL LA L + DFL++N
Sbjct: 136 EAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNS 195
Query: 153 ANIELGAS---TPLMEAAQEGHLELVRYLLDSGA 183
N++ T L + E ++ LL A
Sbjct: 196 GNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKA 229
Score = 50.0 bits (119), Expect = 3e-07
Identities = 21/101 (20%), Positives = 36/101 (35%), Gaps = 19/101 (18%)
Query: 3 TDSFESPLTLAAC----------------GGHVNMPTDSFESPLTLAACGGHVDLALLLI 46
+ E+ L LA G+++ T + L + + LL+
Sbjct: 166 HEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLL 225
Query: 47 ERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGAN 87
A+IE N +S E+PL +A H LL + +
Sbjct: 226 RGKASIEIAN---ESGETPLDIAKRLKHEHCEELLTQALSG 263
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 60.7 bits (147), Expect = 2e-10
Identities = 37/210 (17%), Positives = 57/210 (27%), Gaps = 20/210 (9%)
Query: 58 PTDSFESPLTLAACGGHVDLALLLIERGANIEEV------NDEGYTPLMEAAR---EGHE 108
L A C + L G + + L A + +
Sbjct: 128 RCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASL 187
Query: 109 EMVCVLLQKGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIEL---GASTPLME 165
+V ++Q G ++A + TAL A D LLK A + T L
Sbjct: 188 PLVDFIIQNGGHLDAKAADGN-TALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDI 246
Query: 166 AAQEGHLELVRYLLDSGAQEMQTK-HIDILEFKKRKQEESKAAFCRGSESTPTVSSKQAV 224
A ++ H E L + A H+D + S ++ S S
Sbjct: 247 ARKKHHKECEELLEQAQAGTFAFPLHVDYSWVISTENLSSDSSLSSPSALNSLSSPSALN 306
Query: 225 KTTFPPVSTEPSGKPS------DPPNSGKT 248
T E +GKT
Sbjct: 307 STASNSPGIEGLSNKEMRILMLGLDAAGKT 336
Score = 54.5 bits (131), Expect = 2e-08
Identities = 25/112 (22%), Positives = 43/112 (38%), Gaps = 7/112 (6%)
Query: 27 ESPLTLA---ACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIE 83
E L LA A + L +I+ G + ++ + L AA D LL++
Sbjct: 172 ELVLHLAVKVANQASLPLVDFIIQNGGH---LDAKAADGNTALHYAALYNQPDCLKLLLK 228
Query: 84 RGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQ-KGAKINAHTEETQETALT 134
A + VN+ G T L A ++ H+E +L Q + ++
Sbjct: 229 GRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFAFPLHVDYSWVIS 280
Score = 52.6 bits (126), Expect = 8e-08
Identities = 23/116 (19%), Positives = 40/116 (34%), Gaps = 6/116 (5%)
Query: 22 PTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDS---FESPLTLA---ACGGHV 75
L A C + L G + + D+ E L LA A +
Sbjct: 128 RCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASL 187
Query: 76 DLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAKINAHTEETQET 131
L +I+ G +++ +G T L AA + + +LL+ A + E +
Sbjct: 188 PLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETA 243
Score = 38.3 bits (89), Expect = 0.003
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 16 GGHVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHV 75
GGH++ + L AA D LL++ A + VN ++ E+ L +A H
Sbjct: 197 GGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVN---EAGETALDIARKKHHK 253
Query: 76 DLALLL 81
+ LL
Sbjct: 254 ECEELL 259
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 51.2 bits (122), Expect = 4e-07
Identities = 70/417 (16%), Positives = 115/417 (27%), Gaps = 140/417 (33%)
Query: 9 PLTLAACGGHVNMPTDSFESPLTLAACGGHVDLALLLIER-GANIEEVNMPTDSFE---- 63
PLTL+ H S E L + +A L E+ + E PT+ F
Sbjct: 8 PLTLS----H-----GSLEHVLLVPT-ASFF-IASQLQEQFNKILPE---PTEGFAADDE 53
Query: 64 --SPLTLAACG-GHVDLALLLIERGANIEEVNDEGYTPLMEAAREGHEEMVCVLLQKGAK 120
+P L G+V + +E + ++ E L+ G
Sbjct: 54 PTTPAELVGKFLGYVS---------SLVEPSKVGQFDQVLNLC---LTEFENCYLE-GND 100
Query: 121 IN---AHTEETQETALTLACCGGFLDVADFLLKN--------GANIELGASTPLMEAAQE 169
I+ A + +T L L+KN + +++ L A E
Sbjct: 101 IHALAAKLLQENDTTLV---------KTKELIKNYITARIMAKRPFDKKSNSALFRAVGE 151
Query: 170 GHLELVRYLLDSGAQ--------EMQ--------------TKHIDILEFKKRKQEESKAA 207
G+ +L + G Q E++ + L R +++
Sbjct: 152 GNAQL--VAI-FGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKV 208
Query: 208 FCRGSESTPTVSSKQAVKTTFPPVS--TEPSGKPSDP-----PNSGKTKEPPNSGDDQ-S 259
F +G + PS P P S P G Q +
Sbjct: 209 FTQG----------------LNILEWLENPSNTPDKDYLLSIPISC-----PLIGVIQLA 247
Query: 260 SVVNVATDSTLSHVTSTPSTSAATTTQTTSPPVVSAA----SQNTSSATQSSTAA----- 310
V A + AT S +V+A + + S S A
Sbjct: 248 HYVVTAKLLGFTPGELRSYLKGAT---GHSQGLVTAVAIAETDSWESFFVSVRKAITVLF 304
Query: 311 -----TQNASPAT-------QSSNVATQNTP-----VTNLNNAVATLKTAVATLNRH 350
A P T + S + P ++NL ++ V N H
Sbjct: 305 FIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQ--EQVQDYVNKTNSH 359
Score = 45.0 bits (106), Expect = 3e-05
Identities = 33/160 (20%), Positives = 52/160 (32%), Gaps = 56/160 (35%)
Query: 52 IEEVNMPTDS--FESPLTLAACGGHVDL------ALLLIERGANIEEVNDEGYTPLMEA- 102
+E+N + S F S G + AL L+E+ A E++ +G P
Sbjct: 1707 FKEINEHSTSYTFRSE------KGLLSATQFTQPALTLMEK-AAFEDLKSKGLIPADATF 1759
Query: 103 AREGHEEMVCVLLQKGAKINAHTEETQE-TALTLACCGGFLDVADF--LLKN-G------ 152
A GH L G E AL A + + ++ G
Sbjct: 1760 A--GHS------L--G-----------EYAAL--ASLADVMSIESLVEVVFYRGMTMQVA 1796
Query: 153 -ANIELGASTPLMEA------AQEGHLELVRYLLDSGAQE 185
ELG S M A A E ++Y+++ +
Sbjct: 1797 VPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKR 1836
Score = 27.3 bits (60), Expect = 9.4
Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 4/36 (11%)
Query: 286 QTTSPPVVSAASQNTSSATQSSTA----ATQNASPA 317
+ + + +++++S T S ATQ PA
Sbjct: 1700 KLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPA 1735
>1bev_1 Bovine enterovirus coat proteins VP1 to VP4; bovine enterovirus
VG-5-27, picornavirus, icosahedral virus; HET: MYR;
3.00A {Bovine enterovirus} SCOP: b.121.4.1
Length = 281
Score = 35.2 bits (80), Expect = 0.026
Identities = 13/73 (17%), Positives = 24/73 (32%), Gaps = 10/73 (13%)
Query: 256 DDQSSVVNVATDSTLSHVTSTPSTSAATTTQTTSPPVVSAASQNTSSATQSSTAATQNAS 315
+D ++ A D + ++++ + T S P + AA T AT A
Sbjct: 1 NDPGKMLKDAIDKQAAGALVAGTSTSTHSVATDSTPALQAA----------ETGATSTAR 50
Query: 316 PATQSSNVATQNT 328
+ T
Sbjct: 51 DESMIETRTIVPT 63
>3vbh_A EV71, genome polyprotein, capsid protein VP1; hand-foot-and-mouth
disease, enterovirus uncoating, P factor,
adaptor-sensor; HET: SPH; 2.30A {Human enterovirus 71}
PDB: 3vbf_A* 3vbo_A 3vbs_A* 4aed_A* 3vbr_A 3vbu_A
Length = 297
Score = 34.1 bits (77), Expect = 0.058
Identities = 13/74 (17%), Positives = 22/74 (29%), Gaps = 6/74 (8%)
Query: 255 GDDQSSVVNVATDSTLSHVTSTPSTSAATTTQTTSPPVVSAASQNTSSATQSSTAATQNA 314
D S + + L+H P T Q T + + + A+ NA
Sbjct: 5 ADVIESSIGDSVSRALTHALPAP------TGQNTQVSSHRLDTGKVPALQAAEIGASSNA 58
Query: 315 SPATQSSNVATQNT 328
S + N+
Sbjct: 59 SDESMIETRCVLNS 72
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A
1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A*
1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A*
1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Length = 1733
Score = 34.3 bits (78), Expect = 0.068
Identities = 21/106 (19%), Positives = 44/106 (41%), Gaps = 2/106 (1%)
Query: 215 TPTVSSKQAVKTTFPPVSTEPSGKPSDPPNSGKTKEPPNSGDDQSSVVNVATDSTLSHVT 274
+PT S ++ P S S P+ P S + + S + ++ S+
Sbjct: 1557 SPTSPSYSPTSPSYSPTSPSYS--PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1614
Query: 275 STPSTSAATTTQTTSPPVVSAASQNTSSATQSSTAATQNASPATQS 320
++PS S + + + + P S S + S + S + + + SP + +
Sbjct: 1615 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPA 1660
>1aym_1 HRV16, human rhinovirus 16 coat protein; RNA, site-directed
mutagenesis, icosahedral virus; HET: MYR DAO; 2.15A
{Human rhinovirus SP} SCOP: b.121.4.1 PDB: 1ayn_1*
1c8m_1* 1ncr_A* 1nd2_A* 1nd3_A* 1qju_1* 1qjx_1* 1qjy_1*
1d3e_1 1fpn_1* 1v9u_1* 3dpr_A* 3tn9_1 1r1a_1* 2hwd_1*
2hwe_1* 2hwf_1*
Length = 285
Score = 33.2 bits (75), Expect = 0.10
Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 10/67 (14%)
Query: 262 VNVATDSTLSHVTSTPSTSAATTTQTTSPPVVSAASQNTSSATQSSTAATQNASPATQSS 321
V D L+ V P+ + + T + + PV+ AA T T P
Sbjct: 3 VERYVDEVLNEVLVVPNINQSHPTTSNAAPVLDAA----------ETGHTNKIQPEDTIE 52
Query: 322 NVATQNT 328
Q++
Sbjct: 53 TRYVQSS 59
>1hxs_1 Genome polyprotein, coat protein VP1; picornavirus, AB initio phase
DETE icosahedral virus; HET: MYR PLM; 2.20A {Human
poliovirus 1} SCOP: b.121.4.1 PDB: 1nn8_1 1pov_1*
1asj_1* 1po1_1* 1po2_1* 1ar9_1* 1vbd_1* 1al2_1* 1ar7_1*
1ar8_1* 1ar6_1* 2plv_1* 3epc_1* 1dgi_1 3iyb_1 3iyc_1
1eah_1* 1xyr_1 3epf_1* 1pvc_1* ...
Length = 302
Score = 32.5 bits (73), Expect = 0.16
Identities = 16/77 (20%), Positives = 24/77 (31%), Gaps = 13/77 (16%)
Query: 255 GDDQSSVVNVATDSTLSHVTST---PSTSAATTTQTTSPPVVSAASQNTSSATQSSTAAT 311
G SS + T+ TS P+T A+ T + P ++A T AT
Sbjct: 3 GQMGSSSTDNTVRETVGAATSRDALPNTEASGPTHSKEIPALTAV----------ETGAT 52
Query: 312 QNASPATQSSNVATQNT 328
P+
Sbjct: 53 NPLVPSDTVQTRHVVQH 69
>1ncq_A Coat protein VP1; HRV, pleconaril, icosahedral virus; HET: W11;
2.50A {Human rhinovirus 14} SCOP: b.121.4.1 PDB: 1d3i_1*
1hrv_1* 1hri_1* 1na1_A* 1k5m_A* 1r08_1* 1r09_1* 1rvf_1
1vrh_1* 2hwb_1* 2hwc_1* 2r04_1* 2r06_1* 2r07_1* 2rm2_1*
2rr1_1* 2rs1_1* 2rs3_1* 2rs5_1* 4rhv_1 ...
Length = 289
Score = 32.0 bits (72), Expect = 0.25
Identities = 15/74 (20%), Positives = 25/74 (33%), Gaps = 17/74 (22%)
Query: 255 GDDQSSVVNVATDSTLSHVTSTPSTSAATTTQTTSPPVVSAASQNTSSATQSSTAATQNA 314
GD+ V+ T T++ ++S P T P+++A T AT
Sbjct: 3 GDELEEVIVEKTKQTVASISSGPKH-------TQKVPILTAN----------ETGATMPV 45
Query: 315 SPATQSSNVATQNT 328
P+ T
Sbjct: 46 LPSDSIETRTTYMH 59
>1nri_A Hypothetical protein HI0754; structural genomics, haemophilus influ
PSI, protein structure initiative, midwest center for
struc genomics; 1.90A {Haemophilus influenzae} SCOP:
c.80.1.3
Length = 306
Score = 30.8 bits (69), Expect = 0.55
Identities = 9/46 (19%), Positives = 16/46 (34%)
Query: 45 LIERGANIEEVNMPTDSFESPLTLAACGGHVDLALLLIERGANIEE 90
L R I + + TL + LA+++I + E
Sbjct: 243 LKARAVRIVMQATDCNKTLAEQTLLEADQNAKLAIMMILSTLSKSE 288
Score = 28.9 bits (64), Expect = 2.2
Identities = 10/56 (17%), Positives = 19/56 (33%), Gaps = 9/56 (16%)
Query: 24 DSFESPLTLAACGGHVDLALLLIERGANIEEVNMPTDSFESPLTLAACGGHVDLAL 79
+ + TL + LA+++I + E + L G + AL
Sbjct: 258 NKTLAEQTLLEADQNAKLAIMMILSTLSKSEAKV---------LLERHQGKLRNAL 304
>3k8w_A Flagellin homolog; flagellum, structural protein, bacterial
flagellu; 1.70A {Sphingomonas SP} PDB: 2zbi_A 3k8v_A
Length = 326
Score = 30.0 bits (67), Expect = 1.0
Identities = 17/101 (16%), Positives = 33/101 (32%), Gaps = 4/101 (3%)
Query: 253 NSGDDQSSVVNVATDSTLSHVTSTPSTSAATTTQTTSPPVVSAASQNTSSATQSSTAATQ 312
+ + V + T+ T + + A ++ + TA T
Sbjct: 200 QLTEAINRVSSQTNVGASYDKTTGQVTLTSNAAIAVAGAANDATVAGWANNATTGTATTT 259
Query: 313 NASPATQSSNVATQNTPVTNLNNAVATLKTAVATL----NR 349
+ S+ +T ++NA+ + TA A L NR
Sbjct: 260 TGINSLTVSSFTNAQQTITQIDNALKDINTARADLGAVQNR 300
>1mv3_A MYC box dependent interacting protein 1; tumor suppressor,
endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 213
Score = 29.7 bits (65), Expect = 1.2
Identities = 15/101 (14%), Positives = 35/101 (34%)
Query: 229 PPVSTEPSGKPSDPPNSGKTKEPPNSGDDQSSVVNVATDSTLSHVTSTPSTSAATTTQTT 288
+ PS PP K P+ Q ++++ D+ + ++ T + A ++
Sbjct: 26 ATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSLFEDTFVPEISVTTPSQPAEASEVA 85
Query: 289 SPPVVSAASQNTSSATQSSTAATQNASPATQSSNVATQNTP 329
+A +Q S A++ + ++ T
Sbjct: 86 GGTQPAAGAQEPGETAASEAASSSLPAVVVETFPATVNGTV 126
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family,
oxdidative decarboxylation, cystein, lantibiotics,
mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP}
SCOP: c.34.1.1
Length = 194
Score = 28.7 bits (65), Expect = 1.9
Identities = 10/52 (19%), Positives = 14/52 (26%), Gaps = 10/52 (19%)
Query: 32 LAACGG-----HVDLALLLIERGANIEEVNMPTDS---FESPLTLAACGGHV 75
+ CG L I V M T + T++ HV
Sbjct: 13 IGICGSISSVGISSYLLYFKSFFKEIR-VVM-TKTAEDLIPAHTVSYFCDHV 62
Score = 26.8 bits (60), Expect = 7.8
Identities = 7/45 (15%), Positives = 15/45 (33%), Gaps = 10/45 (22%)
Query: 6 FESPLTLAACGGHVNMPTDSFESPLTLAACGGHVDLA----LLLI 46
T++ HV ++ E+ HV++ + I
Sbjct: 49 LIPAHTVSYFCDHVY--SEHGENGKRH----SHVEIGRWADIYCI 87
>1d4m_1 Protein (coxsackievirus A9); picornavirus structure, RGD,
uncoating, virus-receptor interaction, WIN compound,
virus/viral protein; HET: MYR W71; 2.90A {Human
coxsackievirus A9} SCOP: b.121.4.1 PDB: 1h8t_A* 1upn_A
2c8i_A 1m11_1 2x5i_A* 3iyp_A*
Length = 299
Score = 29.3 bits (65), Expect = 1.9
Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 267 DSTLSHVTSTPSTSAATTTQTTSPPVVSAA-SQNTSSATQSSTAATQN 313
++ V T + + + S P ++A + +TS T S T T++
Sbjct: 5 EAIERAVVHVADTMRSGPSNSASVPALTAVETGHTSQVTPSDTMQTRH 52
>2ch7_A Methyl-accepting chemotaxis protein; receptor, four-helix bundle,
signal transduction, methyl-accepting receptor; 2.5A
{Thermotoga maritima} SCOP: h.4.5.1 PDB: 2ch7_B
Length = 309
Score = 28.0 bits (63), Expect = 4.1
Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 2/68 (2%)
Query: 280 SAATTTQTTSPPVVSAASQNTSSATQSSTAATQNASPAT--QSSNVATQNTPVTNLNNAV 337
+AA QT + ++ A + + T + + + S++ + V + V
Sbjct: 239 AAAIEEQTAAVDEITTAMTENAKNAEEITNSVKEVNARLQEISASTEEVTSRVQTIRENV 298
Query: 338 ATLKTAVA 345
LK VA
Sbjct: 299 QMLKEIVA 306
>1ev1_1 Echovirus 1; viral coat protein, capsid, picornavirus, icosahedral
virus; HET: MYR PLM; 3.55A {Human echovirus 1} SCOP:
b.121.4.1
Length = 281
Score = 27.8 bits (61), Expect = 5.6
Identities = 9/56 (16%), Positives = 14/56 (25%), Gaps = 10/56 (17%)
Query: 273 VTSTPSTSAATTTQTTSPPVVSAASQNTSSATQSSTAATQNASPATQSSNVATQNT 328
+ T + T + P ++A T T A P N
Sbjct: 11 MVRVADTVQTSATNSERVPNLTAV----------ETGHTSQAVPGDTMQTRHVINN 56
>2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL
biogenesis/degradation, cell cycle, P transferase; HET:
GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A*
2vg4_A
Length = 284
Score = 27.6 bits (62), Expect = 7.1
Identities = 13/58 (22%), Positives = 19/58 (32%)
Query: 216 PTVSSKQAVKTTFPPVSTEPSGKPSDPPNSGKTKEPPNSGDDQSSVVNVATDSTLSHV 273
P + TFP ST P P P P +++ + D +HV
Sbjct: 2 PQLPPAPDDYPTFPDTSTWPVVFPELPAAPYGGPCRPPQHTSKAAAPRIPADRLPNHV 59
>3laa_A Haemagluttinin family protein; niaid, seattle structural genomics
center for infectious DIS ssgcid, melioidosis; 1.35A
{Burkholderia pseudomallei} PDB: 3la9_A
Length = 200
Score = 27.0 bits (59), Expect = 9.2
Identities = 20/99 (20%), Positives = 32/99 (32%), Gaps = 3/99 (3%)
Query: 253 NSGDDQSSVVNVATDSTLSHVTSTPSTSAATTTQTTSPPVVSAASQNTSSATQSSTAATQ 312
S S N + + T S P + + N ++AT +S A
Sbjct: 25 LSTSISSITTNTTNLGNSTAAALGGGATYDPATGAISAPSYTTYNANGTTATNTSVGAAI 84
Query: 313 NASPATQSSN---VATQNTPVTNLNNAVATLKTAVATLN 348
+ A +T V N+VA AVA ++
Sbjct: 85 DNINANGIKYFHANSTDPDSVATGTNSVAIGPNAVANVD 123
>3ly0_A Dipeptidase AC. metallo peptidase. merops family M19; structural
genomics, nysgrc, target 9523C, phosphinate inhibitor,
PSI-2; HET: LY0; 1.40A {Rhodobacter sphaeroides} PDB:
3fdg_A
Length = 364
Score = 27.0 bits (60), Expect = 10.0
Identities = 16/107 (14%), Positives = 28/107 (26%), Gaps = 3/107 (2%)
Query: 73 GHVDLALLLIERGANIEEVNDEGYTPLM---EAAREGHEEMVCVLLQKGAKINAHTEETQ 129
GH D L L+ AN E + +G +EG + + +
Sbjct: 12 GHNDFLLRLLRNPANRETIWLKGDGTGHLDLPRMKEGGFAGGFFAIYVPSPQAHDAAHFE 71
Query: 130 ETALTLACCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLELVR 176
+ + + ME A G ++ R
Sbjct: 72 AMMDAPPFELPLPPMIRAEQAQPVALAMAGHLLWMERAARGRFKVCR 118
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.308 0.122 0.340
Gapped
Lambda K H
0.267 0.0534 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,747,973
Number of extensions: 275291
Number of successful extensions: 2022
Number of sequences better than 10.0: 1
Number of HSP's gapped: 875
Number of HSP's successfully gapped: 322
Length of query: 352
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 257
Effective length of database: 4,049,298
Effective search space: 1040669586
Effective search space used: 1040669586
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 58 (26.6 bits)