BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5492
(361 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3I2W|A Chain A, Crystal Structure Of EfcF-Bar Domain Of Drosophila
SyndapinPACSIN
pdb|3I2W|B Chain B, Crystal Structure Of EfcF-Bar Domain Of Drosophila
SyndapinPACSIN
Length = 290
Score = 258 bits (660), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 136/253 (53%), Positives = 159/253 (62%), Gaps = 37/253 (14%)
Query: 41 SDSFWEPGNYKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNKKWNELIEKVM 100
SDSFWEPGNYKRTTKRIEDGYKLCNDL LIQERADIEK YAKSL+ W+KKW ELIEK
Sbjct: 1 SDSFWEPGNYKRTTKRIEDGYKLCNDLQQLIQERADIEKGYAKSLRTWSKKWGELIEKGP 60
Query: 101 R-------------------------------------TCWQKDTYHKTVLHIKERKEME 123
WQK+ YH T+ IKERK++E
Sbjct: 61 EYGTTEAAWKGVLTESERISDVHXKIKDNLCNDVNSQIKTWQKENYHHTLXQIKERKDLE 120
Query: 124 DAFKKAQKPWCKLLTKVNKTKNDYHVACKAERSASNQERNASADSSLSMDQLKKMQDRXX 183
D FKKAQKPW KLL KV K K DYH ACK ERSA+NQERNA+ADSSLS DQ+KK DR
Sbjct: 121 DLFKKAQKPWAKLLAKVEKAKADYHSACKTERSATNQERNANADSSLSPDQVKKXHDRVQ 180
Query: 184 XXXXXXXXXXXXYELALQELNSYNPKYMEDMSVVFDKCQEMETTRLQFFKDSLFSIHKCL 243
YE A+ E+ YN Y+ED + VF+KCQ E TRLQFFK+ LF++H CL
Sbjct: 181 KTKDQVQKCREKYEQAIAEITKYNSVYIEDXTSVFEKCQTFEKTRLQFFKEILFNVHSCL 240
Query: 244 NISQDPTVLHIKE 256
++++ ++ I E
Sbjct: 241 DLTKVQSLPQIYE 253
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 32/39 (82%), Positives = 34/39 (87%)
Query: 314 LPQIYEEFYHTINNADHEKDLKWWSNNHGVNMAMNWPQF 352
LPQIYEEF HTINNAD +KDLKWWSNNHG+N A NWP F
Sbjct: 248 LPQIYEEFSHTINNADQQKDLKWWSNNHGINXAXNWPSF 286
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 25/33 (75%)
Query: 250 TVLHIKERKEMEDAFKKAQKPWCKTVLHIKERK 282
T+ IKERK++ED FKKAQKPW K + +++ K
Sbjct: 109 TLXQIKERKDLEDLFKKAQKPWAKLLAKVEKAK 141
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 20/25 (80%)
Query: 274 TVLHIKERKEMEDAFKKAQKPWCIM 298
T+ IKERK++ED FKKAQKPW +
Sbjct: 109 TLXQIKERKDLEDLFKKAQKPWAKL 133
>pdb|3HAH|A Chain A, Crystal Structure Of Human Pacsin1 F-Bar Domain (C2
Lattice)
pdb|3HAH|B Chain B, Crystal Structure Of Human Pacsin1 F-Bar Domain (C2
Lattice)
Length = 325
Score = 192 bits (488), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 107/280 (38%), Positives = 154/280 (55%), Gaps = 42/280 (15%)
Query: 28 MSHHSDENMLIA--SSDSFWEPGNYKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSL 85
MS DE L ++DSFWE GNYKRT KRI+DG++LCNDL+ +QERA IEKAY + L
Sbjct: 1 MSSSYDEASLAPEETTDSFWEVGNYKRTVKRIDDGHRLCNDLMNCVQERAKIEKAYGQQL 60
Query: 86 KGWNKKWNELIEK-------------VMRTC------------------------WQKDT 108
W K+W +LIEK +M WQKD
Sbjct: 61 TDWAKRWRQLIEKGPQYGSLERAWGAIMTEADKVSELHQEVKNNLLNEDLEKVKNWQKDA 120
Query: 109 YHKTVLH-IKERKEMEDAFKKAQKPWCKLLTKVNKTKNDYHVACKAERSASNQERNASAD 167
YHK ++ KE KE ED F+KAQKPW K + ++ K YH+ACK E+ A +E N+ +
Sbjct: 121 YHKQIMGGFKETKEAEDGFRKAQKPWAKKMKELEAAKKAYHLACKEEKLAMTREMNSKTE 180
Query: 168 SSLSMDQLKKMQDRXXXXXXXXXXXXXXYELALQELNSYNPKYMEDMSVVFDKCQEMETT 227
S++ +Q KK+QD+ YE L+++ P+YME+M VF++CQ+ E
Sbjct: 181 QSVTPEQQKKLQDKVDKCKQDVQKTQEKYEKVLEDVGKTTPQYMENMEQVFEQCQQFEEK 240
Query: 228 RLQFFKDSLFSIHKCLNISQDPTVLHIKERKEMEDAFKKA 267
RL F K+ L I + LN++++ + +H+ +E+E A + A
Sbjct: 241 RLVFLKEVLLDIKRHLNLAENSSYIHV--YRELEQAIRGA 278
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 22/36 (61%), Gaps = 6/36 (16%)
Query: 254 IKERKEMEDAFKKAQKPWCKTVLHIKERKEMEDAFK 289
KE KE ED F+KAQKPW K + KE+E A K
Sbjct: 129 FKETKEAEDGFRKAQKPWAKKM------KELEAAKK 158
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 18/34 (52%), Gaps = 6/34 (17%)
Query: 269 KPWCKTVLH------IKERKEMEDAFKKAQKPWC 296
K W K H KE KE ED F+KAQKPW
Sbjct: 114 KNWQKDAYHKQIMGGFKETKEAEDGFRKAQKPWA 147
>pdb|3QNI|A Chain A, Crystal Structure Of Human Pacsin 1 F-Bar Domain
pdb|3QNI|B Chain B, Crystal Structure Of Human Pacsin 1 F-Bar Domain
Length = 307
Score = 192 bits (487), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 107/280 (38%), Positives = 154/280 (55%), Gaps = 42/280 (15%)
Query: 28 MSHHSDENMLIA--SSDSFWEPGNYKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSL 85
MS DE L ++DSFWE GNYKRT KRI+DG++LCNDL+ +QERA IEKAY + L
Sbjct: 1 MSSSYDEASLAPEETTDSFWEVGNYKRTVKRIDDGHRLCNDLMNCVQERAKIEKAYGQQL 60
Query: 86 KGWNKKWNELIEK-------------VMRTC------------------------WQKDT 108
W K+W +LIEK +M WQKD
Sbjct: 61 TDWAKRWRQLIEKGPQYGSLERAWGAIMTEADKVSELHQEVKNNLLNEDLEKVKNWQKDA 120
Query: 109 YHKTVLH-IKERKEMEDAFKKAQKPWCKLLTKVNKTKNDYHVACKAERSASNQERNASAD 167
YHK ++ KE KE ED F+KAQKPW K + ++ K YH+ACK E+ A +E N+ +
Sbjct: 121 YHKQIMGGFKETKEAEDGFRKAQKPWAKKMKELEAAKKAYHLACKEEKLAMTREMNSKTE 180
Query: 168 SSLSMDQLKKMQDRXXXXXXXXXXXXXXYELALQELNSYNPKYMEDMSVVFDKCQEMETT 227
S++ +Q KK+QD+ YE L+++ P+YME+M VF++CQ+ E
Sbjct: 181 QSVTPEQQKKLQDKVDKCKQDVQKTQEKYEKVLEDVGKTTPQYMENMEQVFEQCQQFEEK 240
Query: 228 RLQFFKDSLFSIHKCLNISQDPTVLHIKERKEMEDAFKKA 267
RL F K+ L I + LN++++ + +H+ +E+E A + A
Sbjct: 241 RLVFLKEVLLDIKRHLNLAENSSYIHV--YRELEQAIRGA 278
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 22/36 (61%), Gaps = 6/36 (16%)
Query: 254 IKERKEMEDAFKKAQKPWCKTVLHIKERKEMEDAFK 289
KE KE ED F+KAQKPW K + KE+E A K
Sbjct: 129 FKETKEAEDGFRKAQKPWAKKM------KELEAAKK 158
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 18/34 (52%), Gaps = 6/34 (17%)
Query: 269 KPWCKTVLH------IKERKEMEDAFKKAQKPWC 296
K W K H KE KE ED F+KAQKPW
Sbjct: 114 KNWQKDAYHKQIMGGFKETKEAEDGFRKAQKPWA 147
>pdb|3HAI|A Chain A, Crystal Structure Of Human Pacsin1 F-Bar Domain (P21
Lattice)
pdb|3HAI|B Chain B, Crystal Structure Of Human Pacsin1 F-Bar Domain (P21
Lattice)
pdb|3HAI|C Chain C, Crystal Structure Of Human Pacsin1 F-Bar Domain (P21
Lattice)
pdb|3HAI|D Chain D, Crystal Structure Of Human Pacsin1 F-Bar Domain (P21
Lattice)
Length = 308
Score = 192 bits (487), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 107/280 (38%), Positives = 154/280 (55%), Gaps = 42/280 (15%)
Query: 28 MSHHSDENMLIA--SSDSFWEPGNYKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSL 85
MS DE L ++DSFWE GNYKRT KRI+DG++LCNDL+ +QERA IEKAY + L
Sbjct: 1 MSSSYDEASLAPEETTDSFWEVGNYKRTVKRIDDGHRLCNDLMNCVQERAKIEKAYGQQL 60
Query: 86 KGWNKKWNELIEK-------------VMRTC------------------------WQKDT 108
W K+W +LIEK +M WQKD
Sbjct: 61 TDWAKRWRQLIEKGPQYGSLERAWGAIMTEADKVSELHQEVKNNLLNEDLEKVKNWQKDA 120
Query: 109 YHKTVLH-IKERKEMEDAFKKAQKPWCKLLTKVNKTKNDYHVACKAERSASNQERNASAD 167
YHK ++ KE KE ED F+KAQKPW K + ++ K YH+ACK E+ A +E N+ +
Sbjct: 121 YHKQIMGGFKETKEAEDGFRKAQKPWAKKMKELEAAKKAYHLACKEEKLAMTREMNSKTE 180
Query: 168 SSLSMDQLKKMQDRXXXXXXXXXXXXXXYELALQELNSYNPKYMEDMSVVFDKCQEMETT 227
S++ +Q KK+QD+ YE L+++ P+YME+M VF++CQ+ E
Sbjct: 181 QSVTPEQQKKLQDKVDKCKQDVQKTQEKYEKVLEDVGKTTPQYMENMEQVFEQCQQFEEK 240
Query: 228 RLQFFKDSLFSIHKCLNISQDPTVLHIKERKEMEDAFKKA 267
RL F K+ L I + LN++++ + +H+ +E+E A + A
Sbjct: 241 RLVFLKEVLLDIKRHLNLAENSSYIHV--YRELEQAIRGA 278
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 22/36 (61%), Gaps = 6/36 (16%)
Query: 254 IKERKEMEDAFKKAQKPWCKTVLHIKERKEMEDAFK 289
KE KE ED F+KAQKPW K + KE+E A K
Sbjct: 129 FKETKEAEDGFRKAQKPWAKKM------KELEAAKK 158
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 18/34 (52%), Gaps = 6/34 (17%)
Query: 269 KPWCKTVLH------IKERKEMEDAFKKAQKPWC 296
K W K H KE KE ED F+KAQKPW
Sbjct: 114 KNWQKDAYHKQIMGGFKETKEAEDGFRKAQKPWA 147
>pdb|2X3V|A Chain A, Structure Of The F-Bar Domain Of Mouse Syndapin I
pdb|2X3V|B Chain B, Structure Of The F-Bar Domain Of Mouse Syndapin I
pdb|2X3V|C Chain C, Structure Of The F-Bar Domain Of Mouse Syndapin I
pdb|2X3W|A Chain A, Structure Of Mouse Syndapin I (Crystal Form 2)
pdb|2X3W|B Chain B, Structure Of Mouse Syndapin I (Crystal Form 2)
pdb|2X3W|C Chain C, Structure Of Mouse Syndapin I (Crystal Form 2)
pdb|2X3X|A Chain A, Structure Of Mouse Syndapin I (Crystal Form 1)
pdb|2X3X|B Chain B, Structure Of Mouse Syndapin I (Crystal Form 1)
pdb|2X3X|C Chain C, Structure Of Mouse Syndapin I (Crystal Form 1)
Length = 337
Score = 191 bits (486), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 104/265 (39%), Positives = 148/265 (55%), Gaps = 40/265 (15%)
Query: 41 SDSFWEPGNYKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNKKWNELIEK-- 98
+DSFWE GNYKRT KRI+DG++LCNDL++ +QERA IEKAYA+ L W K+W +LIEK
Sbjct: 13 TDSFWEVGNYKRTVKRIDDGHRLCNDLMSCVQERAKIEKAYAQQLTDWAKRWRQLIEKGP 72
Query: 99 ----------VMRT-------------------------CWQKDTYHKTVLH-IKERKEM 122
M T WQKD YHK ++ KE KE
Sbjct: 73 QYGSLERAWGAMMTEADKVSELHQEVKNSLLNEDLEKVKNWQKDAYHKQIMGGFKETKEA 132
Query: 123 EDAFKKAQKPWCKLLTKVNKTKNDYHVACKAERSASNQERNASADSSLSMDQLKKMQDRX 182
ED F+KAQKPW K + ++ K YH+ACK ER A +E N+ + S++ +Q KK+ D+
Sbjct: 133 EDGFRKAQKPWAKKMKELEAAKKAYHLACKEERLAMTREMNSKTEQSVTPEQQKKLVDKV 192
Query: 183 XXXXXXXXXXXXXYELALQELNSYNPKYMEDMSVVFDKCQEMETTRLQFFKDSLFSIHKC 242
YE L+++ P+YME M VF++CQ+ E RL F K+ L I +
Sbjct: 193 DKCRQDVQKTQEKYEKVLEDVGKTTPQYMEGMEQVFEQCQQFEEKRLVFLKEVLLDIKRH 252
Query: 243 LNISQDPTVLHIKERKEMEDAFKKA 267
LN++++ + +H+ +E+E A + A
Sbjct: 253 LNLAENSSYMHV--YRELEQAIRGA 275
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 28/51 (54%), Gaps = 7/51 (13%)
Query: 254 IKERKEMEDAFKKAQKPWCKTVLHIKERKEMEDAFKKAQKPWCIMQHLKLI 304
KE KE ED F+KAQKPW K + KE+E A KKA C + L +
Sbjct: 126 FKETKEAEDGFRKAQKPWAKKM------KELE-AAKKAYHLACKEERLAMT 169
>pdb|3SYV|A Chain A, Crystal Structure Of Mpacsin 3 F-Bar Domain Mutant
pdb|3SYV|B Chain B, Crystal Structure Of Mpacsin 3 F-Bar Domain Mutant
pdb|3SYV|C Chain C, Crystal Structure Of Mpacsin 3 F-Bar Domain Mutant
pdb|3SYV|D Chain D, Crystal Structure Of Mpacsin 3 F-Bar Domain Mutant
pdb|3SYV|E Chain E, Crystal Structure Of Mpacsin 3 F-Bar Domain Mutant
pdb|3SYV|F Chain F, Crystal Structure Of Mpacsin 3 F-Bar Domain Mutant
pdb|3SYV|G Chain G, Crystal Structure Of Mpacsin 3 F-Bar Domain Mutant
pdb|3SYV|H Chain H, Crystal Structure Of Mpacsin 3 F-Bar Domain Mutant
Length = 347
Score = 190 bits (482), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 99/245 (40%), Positives = 134/245 (54%), Gaps = 40/245 (16%)
Query: 41 SDSFWEPGNYKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNKKWNELIEKV- 99
SFWE GNY+RT +R+EDG++LC DL++ QERA IEKAYA+ L W +KW +EK
Sbjct: 19 GGSFWEAGNYRRTVQRVEDGHRLCGDLVSCFQERARIEKAYAQQLADWARKWRGAVEKGP 78
Query: 100 -------------------------------------MRTCWQKDTYHKTVLH-IKERKE 121
+RT WQ+ +H+ VL +E +
Sbjct: 79 QYGTLEKAWHAFFTAAERLSELHLEVREKLHGPDSERVRT-WQRGAFHRQVLGGFRESRA 137
Query: 122 MEDAFKKAQKPWCKLLTKVNKTKNDYHVACKAERSASNQERNASADSSLSMDQLKKMQDR 181
ED F+KAQKPW K L +V +K YH A K E++A +E +A ADSS+S +QL+K+Q+R
Sbjct: 138 AEDGFRKAQKPWLKRLKEVEASKKSYHTARKDEKTAQTRESHAKADSSMSQEQLRKLQER 197
Query: 182 XXXXXXXXXXXXXXYELALQELNSYNPKYMEDMSVVFDKCQEMETTRLQFFKDSLFSIHK 241
YE L ELN Y P+YMEDM F+ CQ E RL FFKD L ++H+
Sbjct: 198 VGRCTKEAEKMKTQYEQTLAELNRYTPRYMEDMEQAFESCQAAERQRLLFFKDVLLTLHQ 257
Query: 242 CLNIS 246
L++S
Sbjct: 258 HLDLS 262
Score = 34.7 bits (78), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 8/78 (10%)
Query: 240 HKCLNISQDPTVLHIKERKEMEDAFKKAQKPWCKTVLH------IKERKEMEDAFKKAQK 293
H ++ + LH++ R+++ + + W + H +E + ED F+KAQK
Sbjct: 88 HAFFTAAERLSELHLEVREKLHGPDSERVRTWQRGAFHRQVLGGFRESRAAEDGFRKAQK 147
Query: 294 PWCIMQHLKLICILKCCY 311
PW ++ LK + K Y
Sbjct: 148 PW--LKRLKEVEASKKSY 163
>pdb|3QE6|A Chain A, Mouse Pacsin 3 F-Bar Domain Structure
pdb|3QE6|B Chain B, Mouse Pacsin 3 F-Bar Domain Structure
Length = 304
Score = 189 bits (481), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 99/245 (40%), Positives = 134/245 (54%), Gaps = 40/245 (16%)
Query: 41 SDSFWEPGNYKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNKKWNELIEKV- 99
SFWE GNY+RT +R+EDG++LC DL++ QERA IEKAYA+ L W +KW +EK
Sbjct: 13 GGSFWEAGNYRRTVQRVEDGHRLCGDLVSCFQERARIEKAYAQQLADWARKWRGAVEKGP 72
Query: 100 -------------------------------------MRTCWQKDTYHKTVLH-IKERKE 121
+RT WQ+ +H+ VL +E +
Sbjct: 73 QYGTLEKAWHAFFTAAERLSELHLEVREKLHGPDSERVRT-WQRGAFHRPVLGGFRESRA 131
Query: 122 MEDAFKKAQKPWCKLLTKVNKTKNDYHVACKAERSASNQERNASADSSLSMDQLKKMQDR 181
ED F+KAQKPW K L +V +K YH A K E++A +E +A ADSS+S +QL+K+Q+R
Sbjct: 132 AEDGFRKAQKPWLKRLKEVEASKKSYHTARKDEKTAQTRESHAKADSSMSQEQLRKLQER 191
Query: 182 XXXXXXXXXXXXXXYELALQELNSYNPKYMEDMSVVFDKCQEMETTRLQFFKDSLFSIHK 241
YE L ELN Y P+YMEDM F+ CQ E RL FFKD L ++H+
Sbjct: 192 VGRCTKEAEKMKTQYEQTLAELNRYTPRYMEDMEQAFESCQAAERQRLLFFKDVLLTLHQ 251
Query: 242 CLNIS 246
L++S
Sbjct: 252 HLDLS 256
Score = 34.7 bits (78), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 8/78 (10%)
Query: 240 HKCLNISQDPTVLHIKERKEMEDAFKKAQKPWCKTVLH------IKERKEMEDAFKKAQK 293
H ++ + LH++ R+++ + + W + H +E + ED F+KAQK
Sbjct: 82 HAFFTAAERLSELHLEVREKLHGPDSERVRTWQRGAFHRPVLGGFRESRAAEDGFRKAQK 141
Query: 294 PWCIMQHLKLICILKCCY 311
PW ++ LK + K Y
Sbjct: 142 PW--LKRLKEVEASKKSY 157
>pdb|3M3W|A Chain A, Crystal Strcuture Of Mouse Pacsin3 Bar Domain Mutant
pdb|3M3W|B Chain B, Crystal Strcuture Of Mouse Pacsin3 Bar Domain Mutant
Length = 320
Score = 187 bits (476), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 98/245 (40%), Positives = 133/245 (54%), Gaps = 40/245 (16%)
Query: 41 SDSFWEPGNYKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNKKWNELIEKV- 99
SFWE GNY+RT +R+EDG++LC DL++ QERA IEKAYA+ L W +KW +EK
Sbjct: 13 GGSFWEAGNYRRTVQRVEDGHRLCGDLVSCFQERARIEKAYAQQLADWARKWRGAVEKGP 72
Query: 100 -------------------------------------MRTCWQKDTYHKTVLH-IKERKE 121
+RT WQ+ +H+ VL + +
Sbjct: 73 QYGTLEKAWHAFFTAAERLSELHLEVREKLHGPDSERVRT-WQRGAFHRPVLGGFRASRA 131
Query: 122 MEDAFKKAQKPWCKLLTKVNKTKNDYHVACKAERSASNQERNASADSSLSMDQLKKMQDR 181
ED F+KAQKPW K L +V +K YH A K E++A +E +A ADSS+S +QL+K+Q+R
Sbjct: 132 AEDGFRKAQKPWLKRLKEVEASKKSYHTARKDEKTAQTRESHAKADSSMSQEQLRKLQER 191
Query: 182 XXXXXXXXXXXXXXYELALQELNSYNPKYMEDMSVVFDKCQEMETTRLQFFKDSLFSIHK 241
YE L ELN Y P+YMEDM F+ CQ E RL FFKD L ++H+
Sbjct: 192 VGRCTKEAEKMKTQYEQTLAELNRYTPRYMEDMEQAFESCQAAERQRLLFFKDVLLTLHQ 251
Query: 242 CLNIS 246
L++S
Sbjct: 252 HLDLS 256
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Query: 240 HKCLNISQDPTVLHIKERKEMEDAFKKAQKPWCKTVLH------IKERKEMEDAFKKAQK 293
H ++ + LH++ R+++ + + W + H + + ED F+KAQK
Sbjct: 82 HAFFTAAERLSELHLEVREKLHGPDSERVRTWQRGAFHRPVLGGFRASRAAEDGFRKAQK 141
Query: 294 PWCIMQHLKLICILKCCY 311
PW ++ LK + K Y
Sbjct: 142 PW--LKRLKEVEASKKSY 157
>pdb|3LLL|A Chain A, Crystal Structure Of Mouse Pacsin2 F-Bar Domain
pdb|3LLL|B Chain B, Crystal Structure Of Mouse Pacsin2 F-Bar Domain
Length = 287
Score = 185 bits (469), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 105/264 (39%), Positives = 148/264 (56%), Gaps = 40/264 (15%)
Query: 42 DSFWEPGNYKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNKKWNELIEK--- 98
DSFWE GNYKRT KRI+DG++LC DL+ + ERA IEKAYA+ L W ++W +L+EK
Sbjct: 1 DSFWEVGNYKRTVKRIDDGHRLCGDLMNCLHERARIEKAYAQQLTEWARRWRQLVEKGPQ 60
Query: 99 ----------VMRTC------------------------WQKDTYHKTVL-HIKERKEME 123
VM WQK+ +HK ++ KE KE E
Sbjct: 61 YGTVEKAWIAVMSEAERVSELHLEVKASLMNEDFEKIKNWQKEAFHKQMMGGFKETKEAE 120
Query: 124 DAFKKAQKPWCKLLTKVNKTKNDYHVACKAERSASNQERNASADSSLSMDQLKKMQDRXX 183
D F+KAQKPW K L +V K +H ACK E+ A ++E N+ AD SL+ +QLKK+QD+
Sbjct: 121 DGFRKAQKPWAKKLKEVEAAKKAHHTACKEEKLAISREANSKADPSLNPEQLKKLQDKIE 180
Query: 184 XXXXXXXXXXXXYELALQELNSYNPKYMEDMSVVFDKCQEMETTRLQFFKDSLFSIHKCL 243
YE +L+EL+ P+YME+M VF++CQ+ E RL+FF++ L + K L
Sbjct: 181 KCKQDVLKTKDKYEKSLKELDQTTPQYMENMEQVFEQCQQFEEKRLRFFREVLLEVQKHL 240
Query: 244 NISQDPTVLHIKERKEMEDAFKKA 267
++S + I +E+E + K A
Sbjct: 241 DLSNVASYKTI--YRELEQSIKAA 262
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 28/50 (56%), Gaps = 7/50 (14%)
Query: 254 IKERKEMEDAFKKAQKPWCKTVLHIKERKEMEDAFKKAQKPWCIMQHLKL 303
KE KE ED F+KAQKPW K + KE+E A KKA C + L +
Sbjct: 113 FKETKEAEDGFRKAQKPWAKKL------KEVEAA-KKAHHTACKEEKLAI 155
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 23/43 (53%), Gaps = 7/43 (16%)
Query: 260 MEDAFKKAQKPWCKTVLH------IKERKEMEDAFKKAQKPWC 296
M + F+K K W K H KE KE ED F+KAQKPW
Sbjct: 90 MNEDFEKI-KNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWA 131
>pdb|3Q84|A Chain A, Crystal Structure Of Human Pacsin 1 F-Bar Domain
pdb|3Q84|B Chain B, Crystal Structure Of Human Pacsin 1 F-Bar Domain
pdb|3Q84|G Chain G, Crystal Structure Of Human Pacsin 1 F-Bar Domain
pdb|3Q84|H Chain H, Crystal Structure Of Human Pacsin 1 F-Bar Domain
pdb|3Q84|M Chain M, Crystal Structure Of Human Pacsin 1 F-Bar Domain
pdb|3Q84|N Chain N, Crystal Structure Of Human Pacsin 1 F-Bar Domain
Length = 295
Score = 182 bits (461), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 99/266 (37%), Positives = 143/266 (53%), Gaps = 40/266 (15%)
Query: 40 SSDSFWEPGNYKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNKKWNELIEKV 99
++DSFWE GNYKRT KRI+DG++LCNDL +QERA IEKAY + L W K+W +LIEK
Sbjct: 2 TTDSFWEVGNYKRTVKRIDDGHRLCNDLXNCVQERAKIEKAYGQQLTDWAKRWRQLIEKG 61
Query: 100 MRTC-------------------------------------WQKDTYHKTVLH-IKERKE 121
+ WQKD YHK + KE KE
Sbjct: 62 PQYGSLERAWGAIXTEADKVSELHQEVKNNLLNEDLEKVKNWQKDAYHKQIXGGFKETKE 121
Query: 122 MEDAFKKAQKPWCKLLTKVNKTKNDYHVACKAERSASNQERNASADSSLSMDQLKKMQDR 181
ED F+KAQKPW K ++ K YH+ACK E+ A +E N+ + S++ +Q KK+QD+
Sbjct: 122 AEDGFRKAQKPWAKKXKELEAAKKAYHLACKEEKLAXTREXNSKTEQSVTPEQQKKLQDK 181
Query: 182 XXXXXXXXXXXXXXYELALQELNSYNPKYMEDMSVVFDKCQEMETTRLQFFKDSLFSIHK 241
YE L+++ P+Y E+ VF++CQ+ E RL F K+ L I +
Sbjct: 182 VDKCKQDVQKTQEKYEKVLEDVGKTTPQYXENXEQVFEQCQQFEEKRLVFLKEVLLDIKR 241
Query: 242 CLNISQDPTVLHIKERKEMEDAFKKA 267
LN++++ + +H+ +E+E A + A
Sbjct: 242 HLNLAENSSYIHV--YRELEQAIRGA 265
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/20 (70%), Positives = 15/20 (75%)
Query: 254 IKERKEMEDAFKKAQKPWCK 273
KE KE ED F+KAQKPW K
Sbjct: 116 FKETKEAEDGFRKAQKPWAK 135
>pdb|3HAJ|A Chain A, Crystal Structure Of Human Pacsin2 F-Bar Domain (P212121
Lattice)
pdb|3HAJ|B Chain B, Crystal Structure Of Human Pacsin2 F-Bar Domain (P212121
Lattice)
Length = 486
Score = 177 bits (448), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 103/258 (39%), Positives = 148/258 (57%), Gaps = 39/258 (15%)
Query: 28 MSHHSDENMLI-ASSDSFWEPGNYKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLK 86
MS D+++ + SSDSFWE GNYKRT KRI+DG++LC+DL+ + ERA IEKAYA+ L
Sbjct: 1 MSVTYDDSVGVEVSSDSFWEVGNYKRTVKRIDDGHRLCSDLMNCLHERARIEKAYAQQLT 60
Query: 87 GWNKKWNELIEKVMRTC-------------------------------------WQKDTY 109
W ++W +L+EK + WQK+ +
Sbjct: 61 EWARRWRQLVEKGPQYGTVEKAWMAFMSEAERVSELHLEVKASLMNDDFEKIKNWQKEAF 120
Query: 110 HKTVL-HIKERKEMEDAFKKAQKPWCKLLTKVNKTKNDYHVACKAERSASNQERNASADS 168
HK ++ KE KE ED F+KAQKPW K L +V K +H ACK E+ A ++E N+ AD
Sbjct: 121 HKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREANSKADP 180
Query: 169 SLSMDQLKKMQDRXXXXXXXXXXXXXXYELALQELNSYNPKYMEDMSVVFDKCQEMETTR 228
SL+ +QLKK+QD+ YE +L+EL+ P+YME+M VF++CQ+ E R
Sbjct: 181 SLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQYMENMEQVFEQCQQFEEKR 240
Query: 229 LQFFKDSLFSIHKCLNIS 246
L+FF++ L + K L++S
Sbjct: 241 LRFFREVLLEVQKHLDLS 258
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 23/43 (53%), Gaps = 7/43 (16%)
Query: 260 MEDAFKKAQKPWCKTVLH------IKERKEMEDAFKKAQKPWC 296
M D F+K K W K H KE KE ED F+KAQKPW
Sbjct: 105 MNDDFEKI-KNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWA 146
Score = 34.7 bits (78), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 254 IKERKEMEDAFKKAQKPWCKTVLHIK 279
KE KE ED F+KAQKPW K + ++
Sbjct: 128 FKETKEAEDGFRKAQKPWAKKLKEVE 153
>pdb|3Q0K|A Chain A, Crystal Structure Of Human Pacsin 2 F-Bar
pdb|3Q0K|B Chain B, Crystal Structure Of Human Pacsin 2 F-Bar
pdb|3Q0K|C Chain C, Crystal Structure Of Human Pacsin 2 F-Bar
pdb|3Q0K|D Chain D, Crystal Structure Of Human Pacsin 2 F-Bar
Length = 289
Score = 173 bits (439), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 98/243 (40%), Positives = 139/243 (57%), Gaps = 38/243 (15%)
Query: 42 DSFWEPGNYKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNKKWNELIEKVMR 101
DSFWE GNYKRT KRI+DG++LC+DL+ + ERA IEKAYA+ L W ++W +L+EK +
Sbjct: 1 DSFWEVGNYKRTVKRIDDGHRLCSDLMNCLHERARIEKAYAQQLTEWARRWRQLVEKGPQ 60
Query: 102 TC-------------------------------------WQKDTYHKTVL-HIKERKEME 123
WQK+ +HK ++ KE KE E
Sbjct: 61 YGTVEKAWMAFMSEAERVSELHLEVKASLMNDDFEKIKNWQKEAFHKQMMGGFKETKEAE 120
Query: 124 DAFKKAQKPWCKLLTKVNKTKNDYHVACKAERSASNQERNASADSSLSMDQLKKMQDRXX 183
D F+KAQKPW K L +V K +H ACK E+ A ++E N+ AD SL+ +QLKK+QD+
Sbjct: 121 DGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIE 180
Query: 184 XXXXXXXXXXXXYELALQELNSYNPKYMEDMSVVFDKCQEMETTRLQFFKDSLFSIHKCL 243
YE +L+EL+ P+YME+M VF++CQ+ E RL+FF++ L + K L
Sbjct: 181 KCKQDVLKTKEKYEKSLKELDQGTPQYMENMEQVFEQCQQFEEKRLRFFREVLLEVQKHL 240
Query: 244 NIS 246
++S
Sbjct: 241 DLS 243
Score = 35.0 bits (79), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 23/43 (53%), Gaps = 7/43 (16%)
Query: 260 MEDAFKKAQKPWCKTVLH------IKERKEMEDAFKKAQKPWC 296
M D F+K K W K H KE KE ED F+KAQKPW
Sbjct: 90 MNDDFEKI-KNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWA 131
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 254 IKERKEMEDAFKKAQKPWCKTVLHI 278
KE KE ED F+KAQKPW K + +
Sbjct: 113 FKETKEAEDGFRKAQKPWAKKLKEV 137
>pdb|3ACO|A Chain A, Crystal Structure Of The EfcF-Bar Domain Of Human
Pacsin2SYNDAPIN II (2.7 A)
pdb|3ACO|B Chain B, Crystal Structure Of The EfcF-Bar Domain Of Human
Pacsin2SYNDAPIN II (2.7 A)
Length = 350
Score = 169 bits (428), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 99/254 (38%), Positives = 139/254 (54%), Gaps = 38/254 (14%)
Query: 31 HSDENMLIASSDSFWEPGNYKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNK 90
+ D + SSDSFWE GNYKRT KRI+DG++LC+DL + ERA IEKAYA+ L W +
Sbjct: 12 YDDSVGVEVSSDSFWEVGNYKRTVKRIDDGHRLCSDLXNCLHERARIEKAYAQQLTEWAR 71
Query: 91 KWNELIEKVMRTC-------------------------------------WQKDTYHKTV 113
+W +L+EK + WQK+ +HK
Sbjct: 72 RWRQLVEKGPQYGTVEKAWXAFXSEAERVSELHLEVKASLXNDDFEKIKNWQKEAFHKQX 131
Query: 114 LH-IKERKEMEDAFKKAQKPWCKLLTKVNKTKNDYHVACKAERSASNQERNASADSSLSM 172
KE KE ED F+KAQKPW K L +V K +H ACK E+ A ++E N+ AD SL+
Sbjct: 132 XGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREANSKADPSLNP 191
Query: 173 DQLKKMQDRXXXXXXXXXXXXXXYELALQELNSYNPKYMEDMSVVFDKCQEMETTRLQFF 232
+QLKK+QD+ YE +L+EL+ P+Y E+ VF++CQ+ E RL+FF
Sbjct: 192 EQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQYXENXEQVFEQCQQFEEKRLRFF 251
Query: 233 KDSLFSIHKCLNIS 246
++ L + K L++S
Sbjct: 252 REVLLEVQKHLDLS 265
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 23/37 (62%)
Query: 317 IYEEFYHTINNADHEKDLKWWSNNHGVNMAMNWPQFE 353
IY + +I AD +DL+W+ NHG A NWPQFE
Sbjct: 273 IYHDLEQSIRAADAVEDLRWFRANHGPGXAXNWPQFE 309
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 8/52 (15%)
Query: 252 LHIKERKEME-DAFKKAQKPWCKTVLH------IKERKEMEDAFKKAQKPWC 296
LH++ + + D F+K K W K H KE KE ED F+KAQKPW
Sbjct: 103 LHLEVKASLXNDDFEKI-KNWQKEAFHKQXXGGFKETKEAEDGFRKAQKPWA 153
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 254 IKERKEMEDAFKKAQKPWCKTVLHI 278
KE KE ED F+KAQKPW K + +
Sbjct: 135 FKETKEAEDGFRKAQKPWAKKLKEV 159
>pdb|3ABH|A Chain A, Crystal Structure Of The EfcF-Bar Domain Of Human
Pacsin2SYNDAPIN II (2.0 A)
pdb|3ABH|B Chain B, Crystal Structure Of The EfcF-Bar Domain Of Human
Pacsin2SYNDAPIN II (2.0 A)
Length = 312
Score = 169 bits (427), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 99/254 (38%), Positives = 139/254 (54%), Gaps = 38/254 (14%)
Query: 31 HSDENMLIASSDSFWEPGNYKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNK 90
+ D + SSDSFWE GNYKRT KRI+DG++LC+DL + ERA IEKAYA+ L W +
Sbjct: 12 YDDSVGVEVSSDSFWEVGNYKRTVKRIDDGHRLCSDLXNCLHERARIEKAYAQQLTEWAR 71
Query: 91 KWNELIEKVMRTC-------------------------------------WQKDTYHKTV 113
+W +L+EK + WQK+ +HK
Sbjct: 72 RWRQLVEKGPQYGTVEKAWXAFXSEAERVSELHLEVKASLXNDDFEKIKNWQKEAFHKQX 131
Query: 114 LH-IKERKEMEDAFKKAQKPWCKLLTKVNKTKNDYHVACKAERSASNQERNASADSSLSM 172
KE KE ED F+KAQKPW K L +V K +H ACK E+ A ++E N+ AD SL+
Sbjct: 132 XGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREANSKADPSLNP 191
Query: 173 DQLKKMQDRXXXXXXXXXXXXXXYELALQELNSYNPKYMEDMSVVFDKCQEMETTRLQFF 232
+QLKK+QD+ YE +L+EL+ P+Y E+ VF++CQ+ E RL+FF
Sbjct: 192 EQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQYXENXEQVFEQCQQFEEKRLRFF 251
Query: 233 KDSLFSIHKCLNIS 246
++ L + K L++S
Sbjct: 252 REVLLEVQKHLDLS 265
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 23/37 (62%)
Query: 317 IYEEFYHTINNADHEKDLKWWSNNHGVNMAMNWPQFE 353
IY + +I AD +DL+W+ NHG A NWPQFE
Sbjct: 273 IYHDLEQSIRAADAVEDLRWFRANHGPGXAXNWPQFE 309
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 22/41 (53%), Gaps = 7/41 (17%)
Query: 262 DAFKKAQKPWCKTVLH------IKERKEMEDAFKKAQKPWC 296
D F+K K W K H KE KE ED F+KAQKPW
Sbjct: 114 DDFEKI-KNWQKEAFHKQXXGGFKETKEAEDGFRKAQKPWA 153
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 254 IKERKEMEDAFKKAQKPWCKTVLHI 278
KE KE ED F+KAQKPW K + +
Sbjct: 135 FKETKEAEDGFRKAQKPWAKKLKEV 159
>pdb|2EFK|A Chain A, Crystal Structure Of The Efc Domain Of Cdc42-Interacting
Protein 4
Length = 301
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 60 GYKLCNDLIALIQERADIEKAYAKSLKGWNKKW 92
G L + + ++ER ++E+AYAK L+ KK+
Sbjct: 19 GLDLLDRYVKFVKERTEVEQAYAKQLRSLVKKY 51
>pdb|3QR0|A Chain A, Crystal Structure Of S. Officinalis Plc21
Length = 816
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Query: 73 ERADIEKAYAKSLKGWNKKWNELIEKVMRTCWQKDTYHKTVLHIKERKEMEDAFKKAQK 131
+RA I KA K GW N+ I+ + DT+ K L + ER E+E FK+ K
Sbjct: 187 DRARISKALEKI--GWPSGKNDAID---LKAFDFDTFFKFYLALLERSEIEGIFKELSK 240
>pdb|3T7F|A Chain A, Atg8 Transfer From Atg7 To Atg3: A Distinctive E1-E2
Architecture And Mechanism In The Autophagy Pathway
Length = 291
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 268 QKPWCKTVLHIKERKEMEDAFKKAQKPWCIMQHLKLICIL 307
Q+P TVLH++ ++ F K QK W + + K +CIL
Sbjct: 148 QRP-SSTVLHVRPEPSLKGLFSKCQK-WFDVNYSKWVCIL 185
>pdb|3RUJ|A Chain A, Crystal Structure Of N-Terminal Region Of Yeast Atg7
Length = 296
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 268 QKPWCKTVLHIKERKEMEDAFKKAQKPWCIMQHLKLICIL 307
Q+P TVLH++ ++ F K QK W + + K +CIL
Sbjct: 148 QRP-SSTVLHVRPEPSLKGLFSKCQK-WFDVNYSKWVCIL 185
>pdb|4GSJ|A Chain A, Crystal Structure Of Atg7 Ntd K14a F16a D18a Mutant
Length = 291
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 268 QKPWCKTVLHIKERKEMEDAFKKAQKPWCIMQHLKLICIL 307
Q+P TVLH++ ++ F K QK W + + K +CIL
Sbjct: 148 QRP-SSTVLHVRPEPSLKGLFSKCQK-WFDVNYSKWVCIL 185
>pdb|2EFL|A Chain A, Crystal Structure Of The Efc Domain Of Formin-binding
Protein 17
Length = 305
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 60 GYKLCNDLIALIQERADIEKAYAKSLKGWNKKW 92
G + I ++ER +IE +YAK L+ +KK+
Sbjct: 26 GIDILEKYIKFVKERTEIELSYAKQLRNLSKKY 58
>pdb|3T7H|A Chain A, Atg8 Transfer From Atg7 To Atg3: A Distinctive E1-E2
Architecture And Mechanism In The Autophagy Pathway
pdb|3T7H|B Chain B, Atg8 Transfer From Atg7 To Atg3: A Distinctive E1-E2
Architecture And Mechanism In The Autophagy Pathway
Length = 291
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 268 QKPWCKTVLHIKERKEMEDAFKKAQKPWCIMQHLKLICIL 307
Q+P TVLH++ ++ F K QK W + + K +CIL
Sbjct: 148 QRP-SSTVLHVRPEPSLKGLFSKCQK-WFDVNYSKWVCIL 185
>pdb|3T7G|A Chain A, Atg8 Transfer From Atg7 To Atg3: A Distinctive E1-E2
Architecture And Mechanism In The Autophagy Pathway
pdb|3T7G|B Chain B, Atg8 Transfer From Atg7 To Atg3: A Distinctive E1-E2
Architecture And Mechanism In The Autophagy Pathway
Length = 291
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 268 QKPWCKTVLHIKERKEMEDAFKKAQKPWCIMQHLKLICIL 307
Q+P TVLH++ ++ F K QK W + + K +CIL
Sbjct: 148 QRP-SSTVLHVRPEPSLKGLFSKCQK-WFDVNYSKWVCIL 185
>pdb|4GSK|A Chain A, Crystal Structure Of An Atg7-Atg10 Crosslinked Complex
pdb|4GSK|B Chain B, Crystal Structure Of An Atg7-Atg10 Crosslinked Complex
Length = 615
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 268 QKPWCKTVLHIKERKEMEDAFKKAQKPWCIMQHLKLICIL 307
Q+P TVLH++ ++ F K QK W + + K +CIL
Sbjct: 148 QRP-SSTVLHVRPEPSLKGLFSKCQK-WFDVNYSKWVCIL 185
>pdb|3VH1|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Atg7 (1-595)
Length = 598
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 268 QKPWCKTVLHIKERKEMEDAFKKAQKPWCIMQHLKLICIL 307
Q+P TVLH++ ++ F K QK W + + K +CIL
Sbjct: 149 QRP-SSTVLHVRPEPSLKGLFSKCQK-WFDVNYSKWVCIL 186
>pdb|4GSL|A Chain A, Crystal Structure Of An Atg7-Atg3 Crosslinked Complex
pdb|4GSL|B Chain B, Crystal Structure Of An Atg7-Atg3 Crosslinked Complex
Length = 615
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 268 QKPWCKTVLHIKERKEMEDAFKKAQKPWCIMQHLKLICIL 307
Q+P TVLH++ ++ F K QK W + + K +CIL
Sbjct: 148 QRP-SSTVLHVRPEPSLKGLFSKCQK-WFDVNYSKWVCIL 185
>pdb|3VH2|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Atg7 (1-613)
Length = 616
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 268 QKPWCKTVLHIKERKEMEDAFKKAQKPWCIMQHLKLICIL 307
Q+P TVLH++ ++ F K QK W + + K +CIL
Sbjct: 149 QRP-SSTVLHVRPEPSLKGLFSKCQK-WFDVNYSKWVCIL 186
>pdb|3QR1|A Chain A, Crystal Structure Of L. Pealei Plc21
pdb|3QR1|D Chain D, Crystal Structure Of L. Pealei Plc21
Length = 813
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
Query: 45 WEPGNYKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLK--GWNKKWNELIEKVMRT 102
WE ++ TT +E + + + D AK+++ GW N+ IE
Sbjct: 155 WEKLYFRLTTVEMEKNKIPVKSIQKCLSKDKDDRTRVAKAIEKIGWPSGKNDAIEI---K 211
Query: 103 CWQKDTYHKTVLHIKERKEMEDAFKK 128
+ DT+ K L + ER E+E FK+
Sbjct: 212 AFDFDTFFKFYLSLLERSEIEGIFKE 237
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.130 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,142,303
Number of Sequences: 62578
Number of extensions: 392238
Number of successful extensions: 1293
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1201
Number of HSP's gapped (non-prelim): 111
length of query: 361
length of database: 14,973,337
effective HSP length: 100
effective length of query: 261
effective length of database: 8,715,537
effective search space: 2274755157
effective search space used: 2274755157
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)