Query psy5492
Match_columns 361
No_of_seqs 211 out of 666
Neff 6.1
Searched_HMMs 46136
Date Fri Aug 16 18:53:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5492.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5492hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2856|consensus 100.0 3.7E-69 7.9E-74 518.4 29.7 256 38-356 4-297 (472)
2 cd07679 F-BAR_PACSIN2 The F-BA 100.0 1.2E-55 2.6E-60 416.2 28.4 206 44-249 1-244 (258)
3 cd07681 F-BAR_PACSIN3 The F-BA 100.0 5.6E-53 1.2E-57 400.0 29.1 206 44-249 1-244 (258)
4 cd07680 F-BAR_PACSIN1 The F-BA 100.0 1E-51 2.2E-56 392.1 28.5 206 44-249 1-244 (258)
5 cd07673 F-BAR_FCHO2 The F-BAR 100.0 4.5E-50 9.7E-55 384.2 29.9 237 40-355 2-269 (269)
6 cd07655 F-BAR_PACSIN The F-BAR 100.0 3.6E-47 7.8E-52 362.1 28.5 206 44-249 1-244 (258)
7 cd07648 F-BAR_FCHO The F-BAR ( 100.0 3.3E-45 7.1E-50 348.5 29.4 228 48-354 5-261 (261)
8 cd07674 F-BAR_FCHO1 The F-BAR 100.0 2.3E-44 5E-49 343.3 29.4 227 48-354 5-261 (261)
9 cd07671 F-BAR_PSTPIP1 The F-BA 100.0 1.1E-42 2.4E-47 328.4 27.7 200 47-248 4-228 (242)
10 cd07647 F-BAR_PSTPIP The F-BAR 100.0 1.1E-42 2.5E-47 327.6 26.7 203 44-248 1-228 (239)
11 cd07672 F-BAR_PSTPIP2 The F-BA 100.0 4.1E-42 8.9E-47 324.2 27.3 201 46-248 3-229 (240)
12 cd07651 F-BAR_PombeCdc15_like 100.0 7.3E-39 1.6E-43 300.9 25.8 195 48-248 5-225 (236)
13 cd07658 F-BAR_NOSTRIN The F-BA 100.0 2.4E-38 5.2E-43 298.5 26.9 197 44-240 1-238 (239)
14 cd07649 F-BAR_GAS7 The F-BAR ( 100.0 9.5E-37 2.1E-41 286.5 25.5 187 48-243 5-217 (233)
15 cd07676 F-BAR_FBP17 The F-BAR 100.0 2.3E-35 5E-40 280.3 26.9 198 44-243 3-234 (253)
16 cd07653 F-BAR_CIP4-like The F- 100.0 6.5E-33 1.4E-37 261.9 25.7 198 44-243 3-232 (251)
17 cd07675 F-BAR_FNBP1L The F-BAR 100.0 1.3E-32 2.7E-37 260.3 25.6 197 44-242 3-232 (252)
18 cd07650 F-BAR_Syp1p_like The F 100.0 2.2E-28 4.7E-33 229.3 24.7 210 49-347 6-228 (228)
19 cd07657 F-BAR_Fes_Fer The F-BA 100.0 9.9E-27 2.1E-31 219.3 26.0 203 44-246 1-235 (237)
20 KOG2398|consensus 99.9 2.7E-25 5.9E-30 232.5 22.5 228 58-357 2-253 (611)
21 cd07686 F-BAR_Fer The F-BAR (F 99.9 9.2E-24 2E-28 198.1 24.2 194 47-245 4-231 (234)
22 cd07652 F-BAR_Rgd1 The F-BAR ( 99.9 2.7E-22 5.8E-27 188.9 24.6 192 47-241 4-227 (234)
23 cd07610 FCH_F-BAR The Extended 99.9 1.6E-22 3.4E-27 182.7 21.3 162 49-244 1-176 (191)
24 cd07654 F-BAR_FCHSD The F-BAR 99.9 1.2E-19 2.6E-24 173.5 24.5 192 49-243 6-245 (264)
25 cd07656 F-BAR_srGAP The F-BAR 99.8 1.4E-19 3E-24 171.2 20.3 174 48-221 5-232 (241)
26 cd07678 F-BAR_FCHSD1 The F-BAR 99.8 2.7E-18 5.9E-23 163.7 25.0 192 49-243 6-244 (263)
27 cd07685 F-BAR_Fes The F-BAR (F 99.8 7.8E-17 1.7E-21 150.0 24.9 197 44-245 1-234 (237)
28 cd07677 F-BAR_FCHSD2 The F-BAR 99.7 1.6E-15 3.5E-20 143.8 22.0 179 59-240 5-238 (260)
29 KOG3565|consensus 99.7 9.7E-16 2.1E-20 161.7 20.6 236 48-297 14-301 (640)
30 cd07683 F-BAR_srGAP1 The F-BAR 99.6 1.1E-12 2.3E-17 123.6 22.6 170 49-221 6-244 (253)
31 cd07684 F-BAR_srGAP3 The F-BAR 99.5 3.8E-12 8.1E-17 119.7 22.6 170 49-221 6-244 (253)
32 cd07682 F-BAR_srGAP2 The F-BAR 99.5 2.5E-12 5.5E-17 121.2 20.5 172 49-220 6-253 (263)
33 PF00611 FCH: Fes/CIP4, and EF 99.5 1.4E-13 3E-18 109.9 10.1 65 42-106 1-72 (91)
34 smart00055 FCH Fes/CIP4 homolo 99.5 1.2E-13 2.6E-18 110.1 7.6 66 42-107 1-73 (87)
35 KOG4429|consensus 98.6 1.8E-06 3.8E-11 83.1 16.0 153 119-338 34-187 (421)
36 cd07307 BAR The Bin/Amphiphysi 97.2 0.14 3.1E-06 44.5 24.0 47 49-95 1-47 (194)
37 PF06730 FAM92: FAM92 protein; 96.0 1.4 3E-05 41.6 19.2 26 217-242 165-190 (219)
38 cd07598 BAR_FAM92 The Bin/Amph 95.8 1.7 3.6E-05 40.7 23.0 35 209-243 150-184 (211)
39 cd07634 BAR_GAP10-like The Bin 93.4 7 0.00015 36.6 20.5 166 50-243 11-190 (207)
40 KOG2856|consensus 92.7 1.4 3E-05 44.5 11.3 27 271-297 111-139 (472)
41 cd07636 BAR_GRAF The Bin/Amphi 92.5 9.4 0.0002 35.8 21.8 109 48-160 9-129 (207)
42 cd07639 BAR_ACAP1 The Bin/Amph 92.3 9.7 0.00021 35.5 20.9 167 48-243 9-183 (200)
43 cd07658 F-BAR_NOSTRIN The F-BA 91.6 5.2 0.00011 37.9 13.6 53 191-243 171-223 (239)
44 cd07635 BAR_GRAF2 The Bin/Amph 91.2 13 0.00028 34.8 23.3 113 49-161 10-130 (207)
45 PF06456 Arfaptin: Arfaptin-li 90.2 17 0.00037 34.5 23.7 165 50-243 42-218 (229)
46 cd07679 F-BAR_PACSIN2 The F-BA 90.2 1.4 3.1E-05 42.5 8.3 24 274-297 105-130 (258)
47 cd07606 BAR_SFC_plant The Bin/ 89.7 17 0.00038 33.8 21.4 167 49-243 9-186 (202)
48 cd07590 BAR_Bin3 The Bin/Amphi 87.5 26 0.00056 33.2 19.2 48 179-240 144-191 (225)
49 cd07602 BAR_RhoGAP_OPHN1-like 87.4 25 0.00055 32.9 22.8 107 49-160 10-129 (207)
50 cd07681 F-BAR_PACSIN3 The F-BA 86.0 5.1 0.00011 38.7 9.2 27 274-302 105-133 (258)
51 cd07633 BAR_OPHN1 The Bin/Amph 85.2 33 0.00072 32.1 21.3 107 49-159 10-128 (207)
52 PF08397 IMD: IRSp53/MIM homol 84.1 36 0.00078 31.6 21.9 50 197-246 144-194 (219)
53 cd00011 BAR_Arfaptin_like The 83.5 39 0.00084 31.6 21.1 155 61-243 22-186 (203)
54 cd07627 BAR_Vps5p The Bin/Amph 83.1 39 0.00085 31.3 25.9 40 204-243 160-199 (216)
55 cd07603 BAR_ACAPs The Bin/Amph 82.3 42 0.00091 31.1 22.6 167 48-243 9-183 (200)
56 cd07680 F-BAR_PACSIN1 The F-BA 81.9 6.3 0.00014 38.1 7.9 20 278-297 111-130 (258)
57 smart00721 BAR BAR domain. 76.9 60 0.0013 29.7 22.5 60 135-200 131-190 (239)
58 cd07660 BAR_Arfaptin The Bin/A 76.7 66 0.0014 30.1 20.5 83 135-243 101-183 (201)
59 PF09325 Vps5: Vps5 C terminal 74.8 69 0.0015 29.4 26.0 44 48-91 31-74 (236)
60 cd07623 BAR_SNX1_2 The Bin/Amp 70.6 93 0.002 29.1 25.1 42 49-90 20-61 (224)
61 cd07638 BAR_ACAP2 The Bin/Amph 70.1 95 0.0021 28.9 22.3 106 49-160 10-123 (200)
62 cd07664 BAR_SNX2 The Bin/Amphi 67.0 1.2E+02 0.0026 28.9 24.7 52 192-243 164-215 (234)
63 cd07605 I-BAR_IMD Inverse (I)- 63.8 1.3E+02 0.0029 28.4 23.5 47 197-243 155-201 (223)
64 cd07618 BAR_Rich1 The Bin/Amph 63.1 1.5E+02 0.0032 28.6 25.0 21 49-69 16-36 (246)
65 cd07601 BAR_APPL The Bin/Amphi 59.6 1.6E+02 0.0034 27.8 25.3 168 49-243 10-189 (215)
66 cd07665 BAR_SNX1 The Bin/Amphi 57.0 1.8E+02 0.0039 27.7 25.2 52 192-243 164-215 (234)
67 cd07596 BAR_SNX The Bin/Amphip 56.0 1.5E+02 0.0032 26.4 27.1 59 170-242 142-200 (218)
68 KOG3771|consensus 55.7 45 0.00097 34.8 7.6 61 179-239 156-217 (460)
69 PF05600 DUF773: Protein of un 54.3 3E+02 0.0064 29.3 13.8 36 120-155 134-169 (507)
70 PF03114 BAR: BAR domain; Int 54.2 1.6E+02 0.0034 26.1 25.4 24 50-73 28-51 (229)
71 PF10550 Toxin_36: Conantokin- 53.7 15 0.00033 19.9 2.1 13 78-90 2-14 (15)
72 cd07588 BAR_Amphiphysin The Bi 50.4 2.2E+02 0.0047 26.7 21.4 49 179-241 138-186 (211)
73 cd07659 BAR_PICK1 The Bin/Amph 50.4 2.3E+02 0.0049 26.8 21.3 94 135-243 103-196 (215)
74 KOG0804|consensus 50.3 3.3E+02 0.0071 28.7 12.7 57 139-195 348-404 (493)
75 KOG0250|consensus 50.2 4.7E+02 0.01 30.4 26.7 123 135-268 362-491 (1074)
76 cd07661 BAR_ICA69 The Bin/Amph 49.8 2.2E+02 0.0049 26.6 21.7 168 50-243 11-186 (204)
77 cd07307 BAR The Bin/Amphiphysi 48.5 1.7E+02 0.0037 24.9 15.8 87 135-243 91-177 (194)
78 cd07619 BAR_Rich2 The Bin/Amph 47.3 2.7E+02 0.0059 26.9 15.0 21 49-69 16-36 (248)
79 PRK04778 septation ring format 47.0 3.9E+02 0.0084 28.6 22.0 25 75-99 222-246 (569)
80 cd07686 F-BAR_Fer The F-BAR (F 45.7 2.8E+02 0.006 26.5 11.2 25 190-214 161-185 (234)
81 PF04782 DUF632: Protein of un 42.9 3.5E+02 0.0076 26.9 11.7 79 135-223 99-177 (312)
82 KOG1451|consensus 42.9 4.9E+02 0.011 28.5 19.4 44 49-92 28-71 (812)
83 cd07599 BAR_Rvs167p The Bin/Am 42.5 2.7E+02 0.0059 25.5 22.3 39 170-219 143-181 (216)
84 KOG4403|consensus 41.7 4.4E+02 0.0096 27.7 12.5 61 172-232 308-381 (575)
85 cd07604 BAR_ASAPs The Bin/Amph 39.2 3.3E+02 0.0072 25.5 21.8 41 54-94 15-55 (215)
86 KOG3771|consensus 38.9 4.9E+02 0.011 27.4 16.6 58 176-240 146-203 (460)
87 TIGR03545 conserved hypothetic 38.0 4.1E+02 0.0089 28.6 11.8 108 117-239 164-271 (555)
88 cd07591 BAR_Rvs161p The Bin/Am 37.7 3.5E+02 0.0076 25.4 21.5 47 180-240 144-190 (224)
89 cd07656 F-BAR_srGAP The F-BAR 37.2 3.7E+02 0.0081 25.5 13.9 26 66-91 5-30 (241)
90 PRK11637 AmiB activator; Provi 37.0 4.5E+02 0.0097 26.8 11.7 29 173-201 103-131 (428)
91 cd07641 BAR_ASAP1 The Bin/Amph 35.6 3.9E+02 0.0084 25.3 21.1 43 50-92 11-53 (215)
92 PF15290 Syntaphilin: Golgi-lo 35.1 4.5E+02 0.0098 26.0 10.4 69 175-243 70-140 (305)
93 KOG0994|consensus 34.7 8.6E+02 0.019 29.0 20.7 26 127-152 1615-1640(1758)
94 PF04949 Transcrip_act: Transc 34.7 3.4E+02 0.0074 24.3 14.4 60 176-235 94-153 (159)
95 PF05276 SH3BP5: SH3 domain-bi 34.6 4.2E+02 0.0091 25.4 21.5 37 173-209 184-220 (239)
96 cd07685 F-BAR_Fes The F-BAR (F 32.9 4.5E+02 0.0098 25.2 14.4 61 131-200 98-158 (237)
97 cd07655 F-BAR_PACSIN The F-BAR 32.9 4.4E+02 0.0095 25.1 15.9 14 313-326 245-258 (258)
98 PF09325 Vps5: Vps5 C terminal 32.5 3.9E+02 0.0084 24.3 23.6 40 204-243 180-219 (236)
99 KOG2150|consensus 32.1 6.9E+02 0.015 27.1 15.6 68 193-268 124-191 (575)
100 cd07637 BAR_ACAP3 The Bin/Amph 31.2 4.3E+02 0.0093 24.5 22.9 167 48-243 9-183 (200)
101 cd07593 BAR_MUG137_fungi The B 30.3 4.6E+02 0.01 24.6 16.6 90 137-240 113-202 (215)
102 cd07595 BAR_RhoGAP_Rich-like T 30.1 4.9E+02 0.011 24.8 23.2 21 49-69 16-36 (244)
103 PHA03158 hypothetical protein; 29.3 43 0.00093 31.2 2.4 36 288-325 220-263 (273)
104 PF09537 DUF2383: Domain of un 28.8 1.3E+02 0.0029 24.3 5.2 48 46-98 16-63 (111)
105 cd07675 F-BAR_FNBP1L The F-BAR 28.8 5.4E+02 0.012 24.8 14.8 19 304-322 230-248 (252)
106 PRK14160 heat shock protein Gr 28.4 5.1E+02 0.011 24.4 9.6 62 172-239 60-121 (211)
107 PF00261 Tropomyosin: Tropomyo 27.8 5.1E+02 0.011 24.3 9.7 68 171-243 125-192 (237)
108 PF10552 ORF6C: ORF6C domain; 26.9 3.7E+02 0.008 22.3 8.9 51 227-279 66-116 (116)
109 KOG0810|consensus 26.6 6.4E+02 0.014 25.0 12.5 131 131-275 130-260 (297)
110 PF11285 DUF3086: Protein of u 26.5 5.4E+02 0.012 25.2 9.3 136 188-347 8-162 (283)
111 PF07926 TPR_MLP1_2: TPR/MLP1/ 26.4 4.1E+02 0.0088 22.6 14.8 101 120-227 20-120 (132)
112 PRK14145 heat shock protein Gr 26.3 3.9E+02 0.0085 24.8 8.2 64 170-239 42-105 (196)
113 KOG1003|consensus 26.3 5.5E+02 0.012 24.1 15.1 114 120-241 14-130 (205)
114 KOG3091|consensus 25.7 8.3E+02 0.018 26.0 15.6 86 116-203 353-440 (508)
115 PF15469 Sec5: Exocyst complex 25.1 1.9E+02 0.0042 25.7 5.9 50 192-241 98-149 (182)
116 PRK11637 AmiB activator; Provi 25.0 7.5E+02 0.016 25.2 15.6 6 346-351 306-311 (428)
117 COG4913 Uncharacterized protei 24.7 4.4E+02 0.0095 29.7 9.2 71 212-282 822-900 (1104)
118 PF11172 DUF2959: Protein of u 24.6 5.9E+02 0.013 23.9 12.7 45 173-221 64-108 (201)
119 PRK06800 fliH flagellar assemb 23.9 6E+02 0.013 23.7 10.5 22 301-322 132-153 (228)
120 cd07621 BAR_SNX5_6 The Bin/Amp 23.4 6.3E+02 0.014 23.8 23.8 27 217-243 174-200 (219)
121 cd07657 F-BAR_Fes_Fer The F-BA 23.1 6.5E+02 0.014 23.8 17.6 61 131-201 94-154 (237)
122 cd07646 I-BAR_IMD_IRSp53 Inver 21.9 7.1E+02 0.015 23.8 21.7 52 192-243 153-204 (232)
123 PF02520 DUF148: Domain of unk 21.8 4.5E+02 0.0097 21.5 8.8 32 251-282 78-109 (113)
124 KOG1962|consensus 21.7 4.9E+02 0.011 24.6 8.0 42 172-213 157-198 (216)
125 PRK14755 transcriptional regul 21.0 44 0.00095 20.5 0.6 7 1-7 1-7 (26)
126 PF10234 Cluap1: Clusterin-ass 21.0 6.8E+02 0.015 24.4 9.1 57 175-235 192-248 (267)
127 PRK14162 heat shock protein Gr 20.9 6.7E+02 0.015 23.2 11.1 64 170-239 36-99 (194)
128 PRK14144 heat shock protein Gr 20.2 5E+02 0.011 24.2 7.6 67 167-239 39-105 (199)
No 1
>KOG2856|consensus
Probab=100.00 E-value=3.7e-69 Score=518.42 Aligned_cols=256 Identities=58% Similarity=0.976 Sum_probs=250.0
Q ss_pred hccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhh----------------
Q psy5492 38 IASSDSFWEPGNYKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNKKWNELIEKVMR---------------- 101 (361)
Q Consensus 38 ~~f~~sFWg~~Gy~~l~krik~G~~~ckeL~~flKERA~IEeeYAK~L~kLaKK~~~~~e~g~l---------------- 101 (361)
...+++||++|+|+++++||++|.++|+||+.|++|||.||+.||++|+.||++|++.++.||.
T Consensus 4 e~~sdsFWEvGnYKrtvKRi~DG~rlc~Dl~~~~qERA~IEk~YaqqL~~wakkWr~lvekgpqyGt~e~aW~~~~teae 83 (472)
T KOG2856|consen 4 EVLSDSFWEVGNYKRTVKRIEDGHRLCNDLMNCSQERARIEKAYAQQLTDWAKKWRQLVEKGPQYGTVEKAWNAFMTEAE 83 (472)
T ss_pred cccCcccccccchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHHHHHHH
Confidence 4568899999999999999999999999999999999999999999999999999999998764
Q ss_pred ---------------------hhHhHHHHHHHhhh-hhHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy5492 102 ---------------------TCWQKDTYHKTVLH-IKERKEMEDAFKKAQKPWCKLLTKVNKTKNDYHVACKAERSASN 159 (361)
Q Consensus 102 ---------------------~aWq~~~~H~qL~~-~KE~K~~e~~~~KaqK~~~~~~~kl~KaKK~Y~~~Ckee~~a~~ 159 (361)
.+||+.++|.++++ |||+|++|++|+|+||||++.+++|+++|+.||.+|+++++|..
T Consensus 84 rlS~lH~evKd~L~nd~~e~iktwqK~a~H~~vm~G~KE~ke~ED~FrKAQKPWaK~l~evE~ak~~yh~ack~EksA~~ 163 (472)
T KOG2856|consen 84 RLSELHLEVKDNLINDDVEKIKTWQKEAYHKQVMGGFKETKEAEDGFRKAQKPWAKLLKEVEAAKKAYHAACKEEKSALT 163 (472)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhhhhHHHHhcchhhhHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999 99999999999999999999999999999999999999999999
Q ss_pred HHhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5492 160 QERNASADSSLSMDQLKKMQDRVQKAKEEVQKAKEKYELALQELNSYNPKYMEDMSVVFDKCQEMETTRLQFFKDSLFSI 239 (361)
Q Consensus 160 ~e~~a~~d~~~s~ke~eKl~~K~~K~~~~~~kak~eY~~~l~~ln~~r~~yeeeM~~~~d~~Q~lEe~RI~flK~~L~~y 239 (361)
++.++++|++++|+++.||+++++||.++++++++.|+++|..+|++++.|+++|..+|++||++|++|+.||+++|...
T Consensus 164 re~n~kaDsSvspeq~kKlqdrveK~k~evqktkekYektl~el~~yt~~YmE~MeqvFe~CQ~fE~~Rl~Ffkeil~~v 243 (472)
T KOG2856|consen 164 REQNAKADSSVSPEQLKKLQDRVEKCKQEVQKTKEKYEKTLAELNKYTPVYMEDMEQVFEQCQQFEEKRLQFFKEILLKV 243 (472)
T ss_pred HHhccccCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccccCcchhhhhhhHHhHHHHhhhcCCCchhhHHHHhhhhhHHHHhhcCchhHHHhHHHHHHHHhhcCCChhhHHH
Q psy5492 240 HKCLNISQDPTVLHIKERKEMEDAFKKAQKPWCKTVLHIKERKEMEDAFKKAQKPWCIMQHLKLICILKCCYSRLPQIYE 319 (361)
Q Consensus 240 ~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (361)
+.|||++.++ ++++||+
T Consensus 244 ~~hldl~~~~---------------------------------------------------------------~~~~ly~ 260 (472)
T KOG2856|consen 244 QRHLDLSRNS---------------------------------------------------------------SYSGLYR 260 (472)
T ss_pred HHHhhhhhhc---------------------------------------------------------------chHHHHH
Confidence 9999999887 9999999
Q ss_pred HHHHHHhhCChHhHHHHHHhcCCCCCCCCCcchhhcc
Q psy5492 320 EFYHTINNADHEKDLKWWSNNHGVNMAMNWPQFEVRL 356 (361)
Q Consensus 320 ~~~~~~~~~~~~~dl~~~~~~~g~~~~~~~p~f~~~~ 356 (361)
+|.|+|+++|.++||+||+++|||||+||||+|++|.
T Consensus 261 eleqsIr~Ad~eeDLrww~s~hG~~mamnWPqF~E~s 297 (472)
T KOG2856|consen 261 ELEQSIRAADAEEDLRWWRSNHGPGMAMNWPQFEEWS 297 (472)
T ss_pred HHHHHHhccchHHHHHHHHhcCCCccccCCchHhhcC
Confidence 9999999999999999999999999999999999885
No 2
>cd07679 F-BAR_PACSIN2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 2 (PACSIN2). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 2 or Syndapin II is expressed ubiquitously and is involved in the regulation of tubulin polymerization. It associates with Golgi membranes and forms a complex with dynamin II which is crucial in promoting vesicle formation from the trans-Golgi network. PACSIN 2 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave su
Probab=100.00 E-value=1.2e-55 Score=416.18 Aligned_cols=206 Identities=51% Similarity=0.929 Sum_probs=199.2
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhh----------------------
Q psy5492 44 FWEPGNYKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNKKWNELIEKVMR---------------------- 101 (361)
Q Consensus 44 FWg~~Gy~~l~krik~G~~~ckeL~~flKERA~IEeeYAK~L~kLaKK~~~~~e~g~l---------------------- 101 (361)
||++|||++|++||++|.++|+||++||+|||.||+.||++|++||++|.+.++.||.
T Consensus 1 Fw~~g~Y~~~vkR~~DG~~~C~dl~~~~~ERA~IE~~Yak~L~~~akkw~~~ie~gpeyGTl~~aw~~~~~Eae~~s~~H 80 (258)
T cd07679 1 FWEVGNYKRTVKRIDDGHRLCNDLMNCLHERARIEKVYAQQLTEWAKRWRQLVEKGPQYGTVEKAWCALMSEAEKVSELH 80 (258)
T ss_pred CCCCCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998886543
Q ss_pred ---------------hhHhHHHHHHHhhh-hhHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcc
Q psy5492 102 ---------------TCWQKDTYHKTVLH-IKERKEMEDAFKKAQKPWCKLLTKVNKTKNDYHVACKAERSASNQERNAS 165 (361)
Q Consensus 102 ---------------~aWq~~~~H~qL~~-~KE~K~~e~~~~KaqK~~~~~~~kl~KaKK~Y~~~Ckee~~a~~~e~~a~ 165 (361)
..||++++|+++++ ||++|+++++|+|+||||++.++++++||++||.+|++++.|..++.+++
T Consensus 81 ~~l~~~L~~e~~e~ir~wQKe~~hk~~~~~~Ke~k~~e~~f~KaQKpw~k~~kkv~~aKk~Y~~aCk~e~~A~~~~~~~~ 160 (258)
T cd07679 81 LEVKASLMNEDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKKAYHTACKEEKLATSREANSK 160 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcc
Confidence 77888889999987 99999999999999999999999999999999999999999988998999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy5492 166 ADSSLSMDQLKKMQDRVQKAKEEVQKAKEKYELALQELNSYNPKYMEDMSVVFDKCQEMETTRLQFFKDSLFSIHKCLNI 245 (361)
Q Consensus 166 ~d~~~s~ke~eKl~~K~~K~~~~~~kak~eY~~~l~~ln~~r~~yeeeM~~~~d~~Q~lEe~RI~flK~~L~~y~~~ld~ 245 (361)
+|++++|++++|+++++++|++++.+++..|+.+|+.+|.+++.|+++|..+|+.||++|++||.|||++||.+++|||+
T Consensus 161 ~d~~~~~~q~~K~~~k~~k~~~~~~k~~~~Y~~~l~~L~~~~~~y~e~m~~~fe~~Q~~E~eRi~F~K~~l~~~~~~l~i 240 (258)
T cd07679 161 ADPALNPEQLKKLQDKVEKCKQDVLKTKEKYEKSLKELDQTTPQYMENMEQVFEQCQQFEEKRLRFFREVLLEVQKHLDL 240 (258)
T ss_pred cCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCc
Q psy5492 246 SQDP 249 (361)
Q Consensus 246 ~~~~ 249 (361)
++++
T Consensus 241 ~~~~ 244 (258)
T cd07679 241 SNVA 244 (258)
T ss_pred hhhh
Confidence 9987
No 3
>cd07681 F-BAR_PACSIN3 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 3 (PACSIN3). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 3 or Syndapin III is expressed ubiquitously and regulates glucose uptake in adipocytes through its role in GLUT1 trafficking. It also modulates the subcellular localization and stimulus-specific function of the cation channel TRPV4. PACSIN 3 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to
Probab=100.00 E-value=5.6e-53 Score=399.97 Aligned_cols=206 Identities=53% Similarity=0.951 Sum_probs=199.0
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhh----h------------------
Q psy5492 44 FWEPGNYKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNKKWNELIEKVM----R------------------ 101 (361)
Q Consensus 44 FWg~~Gy~~l~krik~G~~~ckeL~~flKERA~IEeeYAK~L~kLaKK~~~~~e~g~----l------------------ 101 (361)
||++|||++|++||++|.++|+||.+||+|||.||+.||++|.+||++|.+.++.|| +
T Consensus 1 fw~~g~Y~~~vkR~~dG~~~C~el~~f~~eRA~IE~~YAk~L~~lakk~~~~~e~g~eyGTL~~sw~~~~~e~E~ia~~H 80 (258)
T cd07681 1 FWEAGNYRRTVKRIEDGYRLCNDLVSCFQERAKIEKGYAQQLSDWARKWRGIVEKGPQYGTLEKAWHAFLTAAERLSEIH 80 (258)
T ss_pred CCCCcchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhcccccChHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998887653 3
Q ss_pred ---------------hhHhHHHHHHHhhh-hhHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcc
Q psy5492 102 ---------------TCWQKDTYHKTVLH-IKERKEMEDAFKKAQKPWCKLLTKVNKTKNDYHVACKAERSASNQERNAS 165 (361)
Q Consensus 102 ---------------~aWq~~~~H~qL~~-~KE~K~~e~~~~KaqK~~~~~~~kl~KaKK~Y~~~Ckee~~a~~~e~~a~ 165 (361)
..||+.++|+++++ +||+|+++++|+++||+|.+.+++++++|++||.+|+++++|+.++.+++
T Consensus 81 ~~l~~~L~~E~~e~ir~~QKe~~hk~~~~g~ke~K~~e~~f~kaqK~w~k~~kk~~~sKk~Y~~~ck~e~~a~~~e~~~k 160 (258)
T cd07681 81 LELRENLVGEDSEKVRAWQKEAFHKQMIGGFRESKEAEEGFRKAQKPWVKKLKEVESSKKGYHAARKDERTAQTRETHAK 160 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 78888999999997 99999999999999999999999999999999999999999998888888
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy5492 166 ADSSLSMDQLKKMQDRVQKAKEEVQKAKEKYELALQELNSYNPKYMEDMSVVFDKCQEMETTRLQFFKDSLFSIHKCLNI 245 (361)
Q Consensus 166 ~d~~~s~ke~eKl~~K~~K~~~~~~kak~eY~~~l~~ln~~r~~yeeeM~~~~d~~Q~lEe~RI~flK~~L~~y~~~ld~ 245 (361)
+++++++++++|++.|++||.+++.+++.+|+.+|..++.+++.|+++|+.+|+.||++|++||.|||++|..|++|||+
T Consensus 161 ~~~~~~~~q~~K~~~kleK~~~~~~k~~~~Y~~~v~~L~~~~~~w~e~m~~~~d~~Q~~EeeRi~flK~~L~~~~~~l~~ 240 (258)
T cd07681 161 ADSTVSQEQLRKLQDRVEKCTQEAEKAKEQYEKALEELNRYNPRYMEDMEQAFEICQEAERKRLCFFKEMLLDLHQHLDL 240 (258)
T ss_pred cCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCc
Q psy5492 246 SQDP 249 (361)
Q Consensus 246 ~~~~ 249 (361)
+.++
T Consensus 241 ~~~~ 244 (258)
T cd07681 241 SSSD 244 (258)
T ss_pred hccc
Confidence 9988
No 4
>cd07680 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 1 or Syndapin I is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropatholog
Probab=100.00 E-value=1e-51 Score=392.08 Aligned_cols=206 Identities=50% Similarity=0.901 Sum_probs=195.8
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH----hhhh------------------
Q psy5492 44 FWEPGNYKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNKKWNELIE----KVMR------------------ 101 (361)
Q Consensus 44 FWg~~Gy~~l~krik~G~~~ckeL~~flKERA~IEeeYAK~L~kLaKK~~~~~e----~g~l------------------ 101 (361)
|||+|||++|++||++|.++|+||++||+|||.||++||++|++||++|.+.++ .|++
T Consensus 1 fw~~~~y~~~~kr~~~g~~~~~dl~~f~kERA~IE~~Yak~L~~Lakk~~~~~~~~~~~Gtl~~aw~~i~~etE~ia~~H 80 (258)
T cd07680 1 FWEVGNYKRTVKRIDDGHRLCNDLMNCVQERAKIEKAYGQQLTDWAKRWRQLIEKGPQYGSLERAWGAIMTEADKVSELH 80 (258)
T ss_pred CCCCCchHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999976443 2443
Q ss_pred ---------------hhHhHHHHHHHhhh-hhHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcc
Q psy5492 102 ---------------TCWQKDTYHKTVLH-IKERKEMEDAFKKAQKPWCKLLTKVNKTKNDYHVACKAERSASNQERNAS 165 (361)
Q Consensus 102 ---------------~aWq~~~~H~qL~~-~KE~K~~e~~~~KaqK~~~~~~~kl~KaKK~Y~~~Ckee~~a~~~e~~a~ 165 (361)
..||+.++|+++++ ||++|+++++|+++||+|.+.+++|++||++|+.+|++++.|..++.+++
T Consensus 81 ~~la~~L~~e~~e~~r~~qk~~~~k~~~~~~ke~K~~e~~~~KaQK~~~k~~k~v~~sKk~Ye~~Cke~~~A~~~~~~a~ 160 (258)
T cd07680 81 QEVKNNLLNEDLEKVKNWQKDAYHKQIMGGFKETKEAEDGFRKAQKPWAKKMKELEAAKKAYHLACKEEKLAMTREANSK 160 (258)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 67788888998887 99999999999999999999999999999999999999999988888888
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy5492 166 ADSSLSMDQLKKMQDRVQKAKEEVQKAKEKYELALQELNSYNPKYMEDMSVVFDKCQEMETTRLQFFKDSLFSIHKCLNI 245 (361)
Q Consensus 166 ~d~~~s~ke~eKl~~K~~K~~~~~~kak~eY~~~l~~ln~~r~~yeeeM~~~~d~~Q~lEe~RI~flK~~L~~y~~~ld~ 245 (361)
+|+++++++++|++.+++++.+++.+++++|..+|..+|..+++|+++|+.+|+.||++|++||.||+++||.+|+|||+
T Consensus 161 ~d~~~s~~q~eK~~~k~~k~~~~~~~sk~~Y~~~l~~ln~~~~~y~~~m~~vfd~~Q~~Ee~Ri~flk~~l~~~~~~l~~ 240 (258)
T cd07680 161 AEQSVTPEQQKKLQDKVDKCKQDVQKTQEKYEKVLDDVGKTTPQYMENMEQVFEQCQQFEEKRLVFLKEVLLDIKRHLNL 240 (258)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCc
Q psy5492 246 SQDP 249 (361)
Q Consensus 246 ~~~~ 249 (361)
+.++
T Consensus 241 ~~~~ 244 (258)
T cd07680 241 AESS 244 (258)
T ss_pred ccch
Confidence 9887
No 5
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=100.00 E-value=4.5e-50 Score=384.17 Aligned_cols=237 Identities=20% Similarity=0.317 Sum_probs=207.2
Q ss_pred cccCCCCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhh-hhHhH--------HH
Q psy5492 40 SSDSFWEP--GNYKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNKKWNELIEKVMR-TCWQK--------DT 108 (361)
Q Consensus 40 f~~sFWg~--~Gy~~l~krik~G~~~ckeL~~flKERA~IEeeYAK~L~kLaKK~~~~~e~g~l-~aWq~--------~~ 108 (361)
|.++|||+ .||++|++||++|+.+|+||++||+|||.||++||++|.+||++|.+..+.|++ .+|.. +.
T Consensus 2 F~~~Fwg~~~~G~~~L~~r~k~g~~~~kel~~f~keRa~iEe~Yak~L~kLak~~~~~~~~Gt~~~~~~~~~~e~e~~a~ 81 (269)
T cd07673 2 FLENFWGEKNSGFDVLYHNMKHGQISTKELSDFIRERATIEEAYSRSMTKLAKSASNYSQLGTFAPVWDVFKTSTEKLAN 81 (269)
T ss_pred hhhcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcChHHHHHHHHHHHHHHHHH
Confidence 89999998 599999999999999999999999999999999999999999999988888888 66654 36
Q ss_pred HHHHhhh-----------h-----hHHhHH---HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcccCCC
Q psy5492 109 YHKTVLH-----------I-----KERKEM---EDAFKKAQKPWCKLLTKVNKTKNDYHVACKAERSASNQERNASADSS 169 (361)
Q Consensus 109 ~H~qL~~-----------~-----KE~K~~---e~~~~KaqK~~~~~~~kl~KaKK~Y~~~Ckee~~a~~~e~~a~~d~~ 169 (361)
.|.+|+. | +.+|+. ++++.+++++|+..++.++|||++|+++|++.+.+. . .+
T Consensus 82 ~H~~la~~L~~~~~~l~~~~~~~~k~rK~~ke~~~~~~~~~~~~~~~~~~~~KaK~~Y~~~c~e~e~~~--~------~~ 153 (269)
T cd07673 82 CHLELVRKLQELIKEVQKYGEEQVKSHKKTKEEVAGTLEAVQNIQSITQALQKSKENYNAKCLEQERLK--K------EG 153 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--h------cC
Confidence 7776654 1 233443 456778899999999999999999999999865431 1 14
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCc
Q psy5492 170 LSMDQLKKMQDRVQKAKEEVQKAKEKYELALQELNSYNPKYMEDMSVVFDKCQEMETTRLQFFKDSLFSIHKCLNISQDP 249 (361)
Q Consensus 170 ~s~ke~eKl~~K~~K~~~~~~kak~eY~~~l~~ln~~r~~yeeeM~~~~d~~Q~lEe~RI~flK~~L~~y~~~ld~~~~~ 249 (361)
.++++++|++.++ .+|+++|+.+|+.+|..+++|+++|+.+|+.||++|++||.||+++||.|+++++..++
T Consensus 154 ~t~k~leK~~~k~-------~ka~~~Y~~~v~~l~~~~~~~~~~m~~~~~~~Q~~Ee~Ri~~~k~~l~~y~~~~s~~~~- 225 (269)
T cd07673 154 ATQREIEKAAVKS-------KKATESYKLYVEKYALAKADFEQKMTETAQKFQDIEETHLIRIKEIIGSYSNSVKEIHI- 225 (269)
T ss_pred CCHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 5788888876664 44788899999999999999999999999999999999999999999999998865553
Q ss_pred chhhhhhhHHhHHHHhhhcCCCchhhHHHHhhhhhHHHHhhcCchhHHHhHHHHHHHHhhcCCChhhHHHHHHHHHhhCC
Q psy5492 250 TVLHIKERKEMEDAFKKAQKPWCKTVLHIKERKEMEDAFKKAQKPWCIMQHLKLICILKCCYSRLPQIYEEFYHTINNAD 329 (361)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (361)
.++++|++|+++|++||
T Consensus 226 ---------------------------------------------------------------~~~~~~e~ir~~le~~d 242 (269)
T cd07673 226 ---------------------------------------------------------------QIGQVHEEFINNMANTT 242 (269)
T ss_pred ---------------------------------------------------------------hHHHHHHHHHHHHHhCC
Confidence 79999999999999999
Q ss_pred hHhHHHHHHhcCCCCCCCCCc-chhhc
Q psy5492 330 HEKDLKWWSNNHGVNMAMNWP-QFEVR 355 (361)
Q Consensus 330 ~~~dl~~~~~~~g~~~~~~~p-~f~~~ 355 (361)
+++||.||+++||||+.+|-| .||+|
T Consensus 243 ~~~Di~~fi~~~gTG~~~P~~~~fE~~ 269 (269)
T cd07673 243 VESLIQKFAESKGTGKERPGPIEFEEC 269 (269)
T ss_pred HHHHHHHHHHhcCCCCCCCCCCCCCCC
Confidence 999999999999999988887 99986
No 6
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=100.00 E-value=3.6e-47 Score=362.08 Aligned_cols=206 Identities=62% Similarity=1.023 Sum_probs=187.8
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH----hhhh-hhHhH--------HHHH
Q psy5492 44 FWEPGNYKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNKKWNELIE----KVMR-TCWQK--------DTYH 110 (361)
Q Consensus 44 FWg~~Gy~~l~krik~G~~~ckeL~~flKERA~IEeeYAK~L~kLaKK~~~~~e----~g~l-~aWq~--------~~~H 110 (361)
|||+|||++|++|+++|+++|+||.+||+|||.||++||++|++||++|.+..+ .|++ .+|.. +..|
T Consensus 1 FW~~~~y~~~~kr~~~G~~~~~el~~f~kERa~IE~~Yak~L~kLakk~~~~~~~~~e~gsl~~aw~~~~~e~e~~a~~H 80 (258)
T cd07655 1 FWEVGNYKRTVKRIEDGHKLCDDLMKMVQERAEIEKAYAKKLKEWAKKWRDLIEKGPEYGTLETAWKGLLSEAERLSELH 80 (258)
T ss_pred CCCCCCchhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999987543 3455 44542 2344
Q ss_pred HHh------------------------hh-hhHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcc
Q psy5492 111 KTV------------------------LH-IKERKEMEDAFKKAQKPWCKLLTKVNKTKNDYHVACKAERSASNQERNAS 165 (361)
Q Consensus 111 ~qL------------------------~~-~KE~K~~e~~~~KaqK~~~~~~~kl~KaKK~Y~~~Ckee~~a~~~e~~a~ 165 (361)
.+| +. +|++|+++++|.++|++|.+.+++|+|||++|+.+|++++.|+.+...+.
T Consensus 81 ~~l~~~L~~~v~~~i~~~~~e~~~k~~~~~~ke~K~~e~~~~kaqk~~~~~~~~l~kaKk~Y~~~cke~e~a~~~~~~~~ 160 (258)
T cd07655 81 LSIRDKLLNDVVEEVKTWQKENYHKSMMGGFKETKEAEDGFAKAQKPWAKLLKKVEKAKKAYHAACKAEKSAQKQENNAK 160 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 433 22 67789999999999999999999999999999999999999888888777
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy5492 166 ADSSLSMDQLKKMQDRVQKAKEEVQKAKEKYELALQELNSYNPKYMEDMSVVFDKCQEMETTRLQFFKDSLFSIHKCLNI 245 (361)
Q Consensus 166 ~d~~~s~ke~eKl~~K~~K~~~~~~kak~eY~~~l~~ln~~r~~yeeeM~~~~d~~Q~lEe~RI~flK~~L~~y~~~ld~ 245 (361)
+|+++++++++|++.++.++.+++.+++++|+.+|+.+|..++.|+++||.+|+.||+||++||.|||++||.|+++||+
T Consensus 161 ~d~~~~~~eleK~~~k~~k~~~~~~~~~~~Y~~~l~~~n~~~~~y~~~m~~~~~~~Q~lEe~Ri~~lk~~l~~y~~~l~~ 240 (258)
T cd07655 161 SDTSLSPDQVKKLQDKVEKCKQEVSKTKDKYEKALEDLNKYNPRYMEDMEQVFDKCQEFEEKRLDFFKEILLSYHRHLDL 240 (258)
T ss_pred cCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCc
Q psy5492 246 SQDP 249 (361)
Q Consensus 246 ~~~~ 249 (361)
+.++
T Consensus 241 ~~~~ 244 (258)
T cd07655 241 STNP 244 (258)
T ss_pred ccch
Confidence 9887
No 7
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=100.00 E-value=3.3e-45 Score=348.47 Aligned_cols=228 Identities=20% Similarity=0.329 Sum_probs=198.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhh-hhHhH--------HHHHHHhhh-h-
Q psy5492 48 GNYKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNKKWNELIEKVMR-TCWQK--------DTYHKTVLH-I- 116 (361)
Q Consensus 48 ~Gy~~l~krik~G~~~ckeL~~flKERA~IEeeYAK~L~kLaKK~~~~~e~g~l-~aWq~--------~~~H~qL~~-~- 116 (361)
+||++|+.||++|+.+|+||++||+|||.||++||++|.+||++|.+..+.|++ .+|.. +..|.+|+. +
T Consensus 5 ~G~~~L~~r~k~g~~~~~el~~f~keRa~IEe~Yak~L~kLakk~~~~~~~gt~~~~w~~i~~~~e~~a~~H~~l~~~L~ 84 (261)
T cd07648 5 NGFDVLYHNMKHGQIAVKELADFLRERATIEETYSKALNKLAKQASNSSQLGTFAPLWLVLRVSTEKLSELHLQLVQKLQ 84 (261)
T ss_pred cChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 699999999999999999999999999999999999999999999988878877 56653 367776654 1
Q ss_pred --------------hHHhH---HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcccCCCCCHHHHHHHH
Q psy5492 117 --------------KERKE---MEDAFKKAQKPWCKLLTKVNKTKNDYHVACKAERSASNQERNASADSSLSMDQLKKMQ 179 (361)
Q Consensus 117 --------------KE~K~---~e~~~~KaqK~~~~~~~kl~KaKK~Y~~~Ckee~~a~~~e~~a~~d~~~s~ke~eKl~ 179 (361)
+.+|. .+..+.+++++|++.+..++|||++|+.+|++.+.++. . +.++++++|++
T Consensus 85 ~~~~~l~~~~~~~~k~rK~~k~~~~~~~k~~~~~~~~~~~l~KaK~~Y~~~c~e~e~~~~--~------~~s~k~~eK~~ 156 (261)
T cd07648 85 ELIKDVQKYGEEQHKKHKKVKEEESGTAEAVQAIQTTTAALQKAKEAYHARCLELERLRR--E------NASPKEIEKAE 156 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--c------cCCHHHHHHHH
Confidence 11233 34456789999999999999999999999999776521 1 23789999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcchhhhhhhHH
Q psy5492 180 DRVQKAKEEVQKAKEKYELALQELNSYNPKYMEDMSVVFDKCQEMETTRLQFFKDSLFSIHKCLNISQDPTVLHIKERKE 259 (361)
Q Consensus 180 ~K~~K~~~~~~kak~eY~~~l~~ln~~r~~yeeeM~~~~d~~Q~lEe~RI~flK~~L~~y~~~ld~~~~~~~~~~~~~~~ 259 (361)
.|+++ |+++|+.+|+.+|.+++.|+++|+.+|+.||++|+.||.|||++||.|+++++..+.
T Consensus 157 ~K~~k-------a~~~Y~~~v~~~~~~~~~~~~~m~~~~~~~Q~lEe~Ri~~~k~~l~~y~~~~~~~~~----------- 218 (261)
T cd07648 157 AKLKK-------AQDEYKALVEKYNNIRADFETKMTDSCKRFQEIEESHLRQMKEFLASYAEVLSENHS----------- 218 (261)
T ss_pred HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----------
Confidence 88655 567899999999999999999999999999999999999999999999999976654
Q ss_pred hHHHHhhhcCCCchhhHHHHhhhhhHHHHhhcCchhHHHhHHHHHHHHhhcCCChhhHHHHHHHHHhhCChHhHHHHHHh
Q psy5492 260 MEDAFKKAQKPWCKTVLHIKERKEMEDAFKKAQKPWCIMQHLKLICILKCCYSRLPQIYEEFYHTINNADHEKDLKWWSN 339 (361)
Q Consensus 260 ~~~~~~~~~~p~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~ 339 (361)
.++++|++|+++|++||+++||.+|++
T Consensus 219 -----------------------------------------------------~~~~~~e~~~~~~~~id~~~Di~~fv~ 245 (261)
T cd07648 219 -----------------------------------------------------AVGQVHEEFKRQVDELTVDKLLRQFVE 245 (261)
T ss_pred -----------------------------------------------------hHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 799999999999999999999999999
Q ss_pred cCCCCCCCCCc-chhh
Q psy5492 340 NHGVNMAMNWP-QFEV 354 (361)
Q Consensus 340 ~~g~~~~~~~p-~f~~ 354 (361)
++||||.+|-| +||+
T Consensus 246 ~~gtG~~~P~~~~fe~ 261 (261)
T cd07648 246 SKGTGTEKPELIEFEE 261 (261)
T ss_pred cCCCCCCCCCCCCCCC
Confidence 99999988777 8885
No 8
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=100.00 E-value=2.3e-44 Score=343.27 Aligned_cols=227 Identities=19% Similarity=0.310 Sum_probs=192.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhh-hhHhH--------HHHHHHhhh-hh
Q psy5492 48 GNYKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNKKWNELIEKVMR-TCWQK--------DTYHKTVLH-IK 117 (361)
Q Consensus 48 ~Gy~~l~krik~G~~~ckeL~~flKERA~IEeeYAK~L~kLaKK~~~~~e~g~l-~aWq~--------~~~H~qL~~-~K 117 (361)
.||++|++||++|.++|+||++||+|||.||++||++|++||+...+..+.|++ .+|.. ++.|.+|+. +.
T Consensus 5 ~G~~~l~~r~k~g~~~~kel~~flkeRa~IEe~Yak~L~klak~~~~~~e~Gtl~~~w~~~~~~~E~~a~~H~~l~~~L~ 84 (261)
T cd07674 5 AGFDVLYHNMKHGQISTKELADFVRERAAIEETYSKSMSKLSKMASNGSPLGTFAPMWEVFRVSSDKLALCHLELMRKLN 84 (261)
T ss_pred cChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 599999999999999999999999999999999999999999999888888888 66653 468887765 22
Q ss_pred -----------H----HhHH-HH---HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcccCCCCCHHHHHHH
Q psy5492 118 -----------E----RKEM-ED---AFKKAQKPWCKLLTKVNKTKNDYHVACKAERSASNQERNASADSSLSMDQLKKM 178 (361)
Q Consensus 118 -----------E----~K~~-e~---~~~KaqK~~~~~~~kl~KaKK~Y~~~Ckee~~a~~~e~~a~~d~~~s~ke~eKl 178 (361)
+ .++. +. .++ ..+.++..++.++|||++|+.+|++++.+.. ++.++++++|+
T Consensus 85 ~~~~~i~~~~~~~~k~~kk~~e~~~~~~~-~~q~~q~~~~~l~kaK~~Y~~~cke~e~a~~--------~~~s~k~leK~ 155 (261)
T cd07674 85 DLIKDINRYGDEQVKIHKKTKEEAIGTLE-AVQSLQVQSQHLQKSRENYHSKCVEQERLRR--------EGVPQKELEKA 155 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------cCCCHHHHHHH
Confidence 1 1121 21 122 2334778899999999999999999776531 25789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcchhhhhhhH
Q psy5492 179 QDRVQKAKEEVQKAKEKYELALQELNSYNPKYMEDMSVVFDKCQEMETTRLQFFKDSLFSIHKCLNISQDPTVLHIKERK 258 (361)
Q Consensus 179 ~~K~~K~~~~~~kak~eY~~~l~~ln~~r~~yeeeM~~~~d~~Q~lEe~RI~flK~~L~~y~~~ld~~~~~~~~~~~~~~ 258 (361)
..|+.+ |.++|..+++.||..++.|+++||.+|+.||++|++||.|||++||.|++++...++
T Consensus 156 ~~K~~k-------a~~~y~~~~~ky~~~~~~~~~~m~~~~~~~Q~~Ee~Ri~~lk~~L~~~~~~~~~~~~---------- 218 (261)
T cd07674 156 ELKTKK-------AAESLRGSVEKYNRARGDFEQKMLESAQKFQDIEETHLRHMKLLIKGYSHSVEDTHV---------- 218 (261)
T ss_pred HHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc----------
Confidence 987665 455799999999999999999999999999999999999999999999999833332
Q ss_pred HhHHHHhhhcCCCchhhHHHHhhhhhHHHHhhcCchhHHHhHHHHHHHHhhcCCChhhHHHHHHHHHhhCChHhHHHHHH
Q psy5492 259 EMEDAFKKAQKPWCKTVLHIKERKEMEDAFKKAQKPWCIMQHLKLICILKCCYSRLPQIYEEFYHTINNADHEKDLKWWS 338 (361)
Q Consensus 259 ~~~~~~~~~~~p~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~ 338 (361)
.++++|++|+++|++||+++||+||+
T Consensus 219 ------------------------------------------------------~~~~~~e~~~~~l~~id~~~Di~~fv 244 (261)
T cd07674 219 ------------------------------------------------------QIGQVHEEFKQNVENVGVENLIRKFA 244 (261)
T ss_pred ------------------------------------------------------hHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 68899999999999999999999999
Q ss_pred hcCCCCCCCCCc-chhh
Q psy5492 339 NNHGVNMAMNWP-QFEV 354 (361)
Q Consensus 339 ~~~g~~~~~~~p-~f~~ 354 (361)
++|||||.+|-| +||+
T Consensus 245 ~~~~tG~~~P~~~~fE~ 261 (261)
T cd07674 245 ESKGTGKERPGPVGFEE 261 (261)
T ss_pred HhCCCCCCCCCCCCCCC
Confidence 999999988888 9986
No 9
>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR
Probab=100.00 E-value=1.1e-42 Score=328.43 Aligned_cols=200 Identities=20% Similarity=0.334 Sum_probs=181.5
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhh-hhHh--------HHHHHHHhhh--
Q psy5492 47 PGNYKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNKKWNELIEKVMR-TCWQ--------KDTYHKTVLH-- 115 (361)
Q Consensus 47 ~~Gy~~l~krik~G~~~ckeL~~flKERA~IEeeYAK~L~kLaKK~~~~~e~g~l-~aWq--------~~~~H~qL~~-- 115 (361)
.+||++|++||++|.++|+||.+||+|||.||++||++|.+|+++|.+..+.|++ .+|. .+..|.+|+.
T Consensus 4 ~~G~~~l~~r~~~g~~~c~el~~f~keRa~iE~~Yak~L~kl~kk~~~~~e~gTl~~a~~~~~~e~e~~a~~H~~ia~~L 83 (242)
T cd07671 4 NTGYEILLQRLLDGRKMCKDVEELLKQRAQAEERYGKELVQIARKAGGQTEINTLKASFDQLKQQIENIGNSHIQLAGML 83 (242)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3699999999999999999999999999999999999999999999998898988 6665 3467887644
Q ss_pred ---------h----h-HHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcccCCCCCHHHHHHHHHH
Q psy5492 116 ---------I----K-ERKEMEDAFKKAQKPWCKLLTKVNKTKNDYHVACKAERSASNQERNASADSSLSMDQLKKMQDR 181 (361)
Q Consensus 116 ---------~----K-E~K~~e~~~~KaqK~~~~~~~kl~KaKK~Y~~~Ckee~~a~~~e~~a~~d~~~s~ke~eKl~~K 181 (361)
| | ++|+++++|+++|++|.+.+++|++||++|+.+|++++.|.. ..++.++++++++++|++.|
T Consensus 84 ~~~~~~l~~f~~~qke~rK~~e~~~eK~qk~~~~~~k~l~ksKk~Ye~~Cke~~~a~q--~~~k~~~~~t~keleK~~~K 161 (242)
T cd07671 84 REELKSLEEFRERQKEQRKKYEAVMERVQKSKVSLYKKTMESKKTYEQRCREADEAEQ--TFERSSSTGNPKQSEKSQNK 161 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhccCCHHHHHHHHHH
Confidence 2 2 359999999999999999999999999999999999887632 22334557899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Q psy5492 182 VQKAKEEVQKAKEKYELALQELNSYNPKYMEDMSVVFDKCQEMETTRLQFFKDSLFSIHKCLNISQD 248 (361)
Q Consensus 182 ~~K~~~~~~kak~eY~~~l~~ln~~r~~yeeeM~~~~d~~Q~lEe~RI~flK~~L~~y~~~ld~~~~ 248 (361)
+.++.+.+++++++|..+|..++.+++.|+++|..+|+.||++|++||.|||++||.|+|++++.|+
T Consensus 162 ~~k~~~~~~~a~~~Y~~~v~~l~~~~~~w~~~~~~~~~~~Q~lEeeRi~f~K~~lw~~~n~~s~~Cv 228 (242)
T cd07671 162 AKQCRDAATEAERVYKQNIEQLDKARTEWETEHILTCEVFQLQEDDRITILRNALWVHCNHFSMQCV 228 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHc
Confidence 9999999999999999999999999999999999999999999999999999999999999988876
No 10
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=100.00 E-value=1.1e-42 Score=327.59 Aligned_cols=203 Identities=21% Similarity=0.359 Sum_probs=183.6
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhh-hhHhH--------HHHHHHhh
Q psy5492 44 FWEPGNYKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNKKWNELIEKVMR-TCWQK--------DTYHKTVL 114 (361)
Q Consensus 44 FWg~~Gy~~l~krik~G~~~ckeL~~flKERA~IEeeYAK~L~kLaKK~~~~~e~g~l-~aWq~--------~~~H~qL~ 114 (361)
||+..||++|++|+++|+++|++|++||+|||.||++||++|.+|++++.+..+.|++ .+|.. +..|.+|+
T Consensus 1 ~~~~~G~~~l~~r~~~g~~~~~el~~f~keRa~iE~eYak~L~kLak~~~~~~e~gsl~~aw~~i~~e~e~~a~~H~~la 80 (239)
T cd07647 1 FTSTTGFDTLLQRLKEGKKMCKELEDFLKQRAKAEEDYGKALLKLSKSAGPGDEIGTLKSSWDSLRKETENVANAHIQLA 80 (239)
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999888888888 66664 36777664
Q ss_pred h----------------hhHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcccCCCCCHHHHHHH
Q psy5492 115 H----------------IKERKEMEDAFKKAQKPWCKLLTKVNKTKNDYHVACKAERSASNQERNASADSSLSMDQLKKM 178 (361)
Q Consensus 115 ~----------------~KE~K~~e~~~~KaqK~~~~~~~kl~KaKK~Y~~~Ckee~~a~~~e~~a~~d~~~s~ke~eKl 178 (361)
. .+++|.+++.+.++|++|++.++.|+|||++|+.+|++.+.|+.....+ ++++++++++|+
T Consensus 81 ~~L~~~v~~l~~~~~~~~~~~K~~~~~~~k~qk~~~~~~~~l~KaKk~Y~~~C~e~e~a~~~~~~~--~~~~~~ke~eK~ 158 (239)
T cd07647 81 QSLREEAEKLEEFREKQKEERKKTEDIMKRSQKNKKELYKKTMKAKKSYEQKCREKDKAEQAYEKS--SSGAQPKEAEKL 158 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCCCCHHHHHHH
Confidence 4 1245889999999999999999999999999999999988775544432 346889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Q psy5492 179 QDRVQKAKEEVQKAKEKYELALQELNSYNPKYMEDMSVVFDKCQEMETTRLQFFKDSLFSIHKCLNISQD 248 (361)
Q Consensus 179 ~~K~~K~~~~~~kak~eY~~~l~~ln~~r~~yeeeM~~~~d~~Q~lEe~RI~flK~~L~~y~~~ld~~~~ 248 (361)
+.|+.++.+++++++++|+..|+.+|.+++.|+++|+.+|+.||++|++||.|||+.||.|+++++..|+
T Consensus 159 ~~K~~k~~~~~~~a~~~Y~~~v~~l~~~~~~~~~~~~~~~~~~Q~lEe~Ri~~lk~~l~~y~n~is~~cv 228 (239)
T cd07647 159 KKKAAQCKTSAEEADSAYKSSIGCLEDARVEWESEHATACQVFQNMEEERIKFLRNALWVHCNLGSMQCV 228 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHc
Confidence 9999999999999999999999999999999999999999999999999999999999999999977765
No 11
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=100.00 E-value=4.1e-42 Score=324.17 Aligned_cols=201 Identities=19% Similarity=0.331 Sum_probs=181.1
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHhhhh-hhHh--------HHHHHHHhhh
Q psy5492 46 EPGNYKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNKKWN-ELIEKVMR-TCWQ--------KDTYHKTVLH 115 (361)
Q Consensus 46 g~~Gy~~l~krik~G~~~ckeL~~flKERA~IEeeYAK~L~kLaKK~~-~~~e~g~l-~aWq--------~~~~H~qL~~ 115 (361)
..+||++|++||++|.++|+||++||+|||.||++|||+|.+|+++|. |..+.|++ .+|. .+..|.+|+.
T Consensus 3 ~~~Gy~~l~~r~~~g~~~~~el~~f~kERA~IE~~YaK~L~kLskk~~~g~~E~GTl~~sw~~~~~E~e~~a~~H~~la~ 82 (240)
T cd07672 3 STGGYDCIIQHLNDGRKNCKEFEDFLKERASIEEKYGKELLNLSKKKPCGQTEINTLKRSLDVFKQQIDNVGQSHIQLAQ 82 (240)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458999999999999999999999999999999999999999999986 45677888 6665 3468887654
Q ss_pred -----------h----h-HHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcccCCCCCHHHHHHHH
Q psy5492 116 -----------I----K-ERKEMEDAFKKAQKPWCKLLTKVNKTKNDYHVACKAERSASNQERNASADSSLSMDQLKKMQ 179 (361)
Q Consensus 116 -----------~----K-E~K~~e~~~~KaqK~~~~~~~kl~KaKK~Y~~~Ckee~~a~~~e~~a~~d~~~s~ke~eKl~ 179 (361)
| | .+|++++++++++++|...+++|++||++|+.+|++++.|...... +++.+++++++|++
T Consensus 83 ~L~~~~~~~~~f~~~qk~~rKk~e~~~ek~~K~~~~~~k~~~ksKk~Ye~~Cke~~~a~~~~~~--~~~~~~~ke~~K~~ 160 (240)
T cd07672 83 TLRDEAKKMEDFRERQKLARKKIELIMDAIHKQRAMQFKKTMESKKNYEQKCRDKDEAEQAVNR--NANLVNVKQQEKLF 160 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccCCCCHHHHHHHH
Confidence 3 3 3488999999999999999999999999999999998877554442 35678999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Q psy5492 180 DRVQKAKEEVQKAKEKYELALQELNSYNPKYMEDMSVVFDKCQEMETTRLQFFKDSLFSIHKCLNISQD 248 (361)
Q Consensus 180 ~K~~K~~~~~~kak~eY~~~l~~ln~~r~~yeeeM~~~~d~~Q~lEe~RI~flK~~L~~y~~~ld~~~~ 248 (361)
.|++++++++++++++|+.+|..++.+++.|+++|...|+.||++|++||.|||++||.|+|+++..|+
T Consensus 161 ~Kl~K~~~~~~k~~~~Y~~~v~~l~~~~~~w~~~~~~~c~~fq~lEeeRi~f~k~~lw~~~n~~s~~Cv 229 (240)
T cd07672 161 AKLAQSKQNAEDADRLYMQNISVLDKIREDWQKEHVKACEFFEKQECERINFFRNAVWTHVNQLSQQCV 229 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHc
Confidence 999999999999999999999999999999999999999999999999999999999999999988776
No 12
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=100.00 E-value=7.3e-39 Score=300.89 Aligned_cols=195 Identities=21% Similarity=0.306 Sum_probs=175.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhh-hhHhH--------HHHHHHhhh---
Q psy5492 48 GNYKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNKKWNELIEKVMR-TCWQK--------DTYHKTVLH--- 115 (361)
Q Consensus 48 ~Gy~~l~krik~G~~~ckeL~~flKERA~IEeeYAK~L~kLaKK~~~~~e~g~l-~aWq~--------~~~H~qL~~--- 115 (361)
+||++|++||++|+.+|++|.+||+|||.||++||++|.+||++|.+..+.|++ .+|.. +..|.+++.
T Consensus 5 ~G~~~l~~r~~~g~~~~~el~~f~keRa~iE~eYak~L~kLakk~~~~~~~gsl~~a~~~i~~e~e~~a~~H~~~a~~L~ 84 (236)
T cd07651 5 AGFDVIQTRIKDSLRTLEELRSFYKERASIEEEYAKRLEKLSRKSLGGSEEGGLKNSLDTLRLETESMAKSHLKFAKQIR 84 (236)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 699999999999999999999999999999999999999999999887777887 66653 357776643
Q ss_pred --------------hhHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcccCCCCCHHHHHHHHHH
Q psy5492 116 --------------IKERKEMEDAFKKAQKPWCKLLTKVNKTKNDYHVACKAERSASNQERNASADSSLSMDQLKKMQDR 181 (361)
Q Consensus 116 --------------~KE~K~~e~~~~KaqK~~~~~~~kl~KaKK~Y~~~Ckee~~a~~~e~~a~~d~~~s~ke~eKl~~K 181 (361)
.+.+|.++..+.+++++|.+.++.|+|||++|+.+|++.+.+..+.. .+++++++|++.+
T Consensus 85 ~~v~~~l~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~c~~~e~~~~~~~------~~~~ke~eK~~~k 158 (236)
T cd07651 85 QDLEEKLAAFASSYTQKRKKIQSHMEKLLKKKQDQEKYLEKAREKYEADCSKINSYTLQSQ------LTWGKELEKNNAK 158 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHc------ccCcchHHHHHHH
Confidence 12458889999999999999999999999999999999887654322 4678999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Q psy5492 182 VQKAKEEVQKAKEKYELALQELNSYNPKYMEDMSVVFDKCQEMETTRLQFFKDSLFSIHKCLNISQD 248 (361)
Q Consensus 182 ~~K~~~~~~kak~eY~~~l~~ln~~r~~yeeeM~~~~d~~Q~lEe~RI~flK~~L~~y~~~ld~~~~ 248 (361)
++++..++++++++|+..|+.+|.+++.|+++||.+|+.||++|+.||.|||+.||.|+++++..|+
T Consensus 159 ~~k~~~~~~~~~~~Y~~~v~~~~~~~~~~~~~~~~~~~~~Q~lEe~Ri~~lk~~l~~~a~~~s~~cv 225 (236)
T cd07651 159 LNKAQSSINSSRRDYQNAVKALRELNEIWNREWKAALDDFQDLEEERIQFLKSNCWTFANNISTLCV 225 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999999999999999999977765
No 13
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo
Probab=100.00 E-value=2.4e-38 Score=298.48 Aligned_cols=197 Identities=21% Similarity=0.321 Sum_probs=174.8
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH--hhhh-hhHhH--------HHHHHH
Q psy5492 44 FWEPGNYKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNKKWNELIE--KVMR-TCWQK--------DTYHKT 112 (361)
Q Consensus 44 FWg~~Gy~~l~krik~G~~~ckeL~~flKERA~IEeeYAK~L~kLaKK~~~~~e--~g~l-~aWq~--------~~~H~q 112 (361)
|||++||++|++|+++|+++|+||++||+|||.||++|||+|++||++|....+ .|++ .+|+. +..|.+
T Consensus 1 f~~~~g~~~l~~~~~~G~~~ckel~~f~kERa~IE~~YAK~L~kLa~k~~k~~~~~~Gtl~~aw~~~~~e~e~~a~~H~~ 80 (239)
T cd07658 1 FMGQKGFEELRRYVKQGGDFCKELATVLQERAELELNYAKGLSKLSGKLSKASKSVSGTLSSAWTCVAEEMESEADIHRN 80 (239)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999854322 2777 77763 368887
Q ss_pred hhh-----------------hhHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh-------------
Q psy5492 113 VLH-----------------IKERKEMEDAFKKAQKPWCKLLTKVNKTKNDYHVACKAERSASNQER------------- 162 (361)
Q Consensus 113 L~~-----------------~KE~K~~e~~~~KaqK~~~~~~~kl~KaKK~Y~~~Ckee~~a~~~e~------------- 162 (361)
|+. .+++|.++++++++|++|.+.++.++++|++|+.+|++.+.++....
T Consensus 81 la~~L~~ev~~~l~~~~~~~~k~rK~~~~~~~k~qk~~~~~~~~~~k~kk~y~~~~kE~e~a~~~~~~~~~~~~~~~~~~ 160 (239)
T cd07658 81 LGSALTEEAIKPLRQVLDEQHKTRKPVENEVDKAAKLLTDWRSEQIKVKKKLHGLARENEKLQDQVEDNKQSCTKQKMLN 160 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHh
Confidence 754 12459999999999999999999999999999999999886654432
Q ss_pred hcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5492 163 NASADSSLSMDQLKKMQDRVQKAKEEVQKAKEKYELALQELNSYNPKYMEDMSVVFDKCQEMETTRLQFFKDSLFSIH 240 (361)
Q Consensus 163 ~a~~d~~~s~ke~eKl~~K~~K~~~~~~kak~eY~~~l~~ln~~r~~yeeeM~~~~d~~Q~lEe~RI~flK~~L~~y~ 240 (361)
.++.++.+++++++|+..++.++.+++.+++.+|..+|..++.++++|+++|..+|+.||++|++||.|||++|+.|+
T Consensus 161 ~~~k~~~~~~k~~~Kl~~k~~ka~~~~~k~e~~y~~~~~~l~~~~~~~~~~~~~~~~~~Q~~E~~rl~~~k~~l~~y~ 238 (239)
T cd07658 161 KLKKSAEVQDKEDEKLEAKRKKGEESRLKAENEYYTCCVRLERLRLEWESALRKGLNQYESLEEERLQHLKHSLSQYL 238 (239)
T ss_pred hhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 123456788999999999999999999999999999999999999999999999999999999999999999999995
No 14
>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=100.00 E-value=9.5e-37 Score=286.51 Aligned_cols=187 Identities=17% Similarity=0.236 Sum_probs=164.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhh-hhHhH--------HHHHHHhhh---
Q psy5492 48 GNYKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNKKWNELIEKVMR-TCWQK--------DTYHKTVLH--- 115 (361)
Q Consensus 48 ~Gy~~l~krik~G~~~ckeL~~flKERA~IEeeYAK~L~kLaKK~~~~~e~g~l-~aWq~--------~~~H~qL~~--- 115 (361)
+||++|++||++|.++|+||++||+|||.||++||++|.+||++..+..+.|++ .+|+. +.+|.+|+.
T Consensus 5 ~Gf~vl~~~~k~g~~~~~el~~fl~ERa~IEe~Yak~L~klak~~~~~~e~Gtl~~sw~~~~~e~E~~a~~H~~la~~L~ 84 (233)
T cd07649 5 TGFEILLQKQLKGKQMQKEMAEFIRERIKIEEEYAKNLSKLSQSSLAAQEEGTLGEAWAQVKKSLADEAEVHLKFSSKLQ 84 (233)
T ss_pred ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 699999999999999999999999999999999999999999999888888988 77764 468887754
Q ss_pred --------------hhHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcccCCCCCHHHHHHHHHH
Q psy5492 116 --------------IKERKEMEDAFKKAQKPWCKLLTKVNKTKNDYHVACKAERSASNQERNASADSSLSMDQLKKMQDR 181 (361)
Q Consensus 116 --------------~KE~K~~e~~~~KaqK~~~~~~~kl~KaKK~Y~~~Ckee~~a~~~e~~a~~d~~~s~ke~eKl~~K 181 (361)
.+.+|.++++|.+++++|.+.++++++||+.|+.+|++++.+...... .++++++++++|++.|
T Consensus 85 ~ev~~~l~~f~~~~~k~~k~~e~~~~k~~K~~~~~~~~~~kaKk~y~~~cke~e~~~~~~~~--~k~~~s~~~~~K~~~K 162 (233)
T cd07649 85 SEVEKPLLNFRENFKKDMKKLDHHIADLRKQLASRYAAVEKARKALLERQKDLEGKTQQLEI--KLSNKTEEDIKKARRK 162 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcccCCHHHHHHHHHH
Confidence 223489999999999999999999999999999999998765333322 3567899999998887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5492 182 VQKAKEEVQKAKEKYELALQELNSYNPKYMEDMSVVFDKCQEMETTRLQFFKDSLFSIHKCL 243 (361)
Q Consensus 182 ~~K~~~~~~kak~eY~~~l~~ln~~r~~yeeeM~~~~d~~Q~lEe~RI~flK~~L~~y~~~l 243 (361)
+.+ |.++|..+++.|+.++++|+++|+.+|+.||++|++||.|||++|+.|+.++
T Consensus 163 ~~K-------a~~e~~~~ve~y~~~r~~we~~m~~~~~~~Q~~Ee~Rl~~lk~~L~~y~~~~ 217 (233)
T cd07649 163 STQ-------AGDDLMRCVDLYNQAQSKWFEEMVTTSLELERLEVERIEMIRQHLCQYTQLR 217 (233)
T ss_pred HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666 5577777888888999999999999999999999999999999999999998
No 15
>cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Formin Binding Protein 17 (FBP17), also called FormiN Binding Protein 1 (FNBP1), is involved in dynamin-mediated endocytosis. It is recruited to clathrin-coated pits late in the endocytosis process and may play a role in the invagination and scission steps. FBP17 binds in vivo to tankyrase, a protein involved in telomere maintenance and mitogen activated protein kinase (MAPK) signaling. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=100.00 E-value=2.3e-35 Score=280.25 Aligned_cols=198 Identities=22% Similarity=0.352 Sum_probs=175.5
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH----hhh----hhhHhH--------H
Q psy5492 44 FWEPGNYKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNKKWNELIE----KVM----RTCWQK--------D 107 (361)
Q Consensus 44 FWg~~Gy~~l~krik~G~~~ckeL~~flKERA~IEeeYAK~L~kLaKK~~~~~e----~g~----l~aWq~--------~ 107 (361)
.| +||+.|.+|+.+|++||++|..||+|||+||++||++|++||++|.+... .+| ..+|.. +
T Consensus 3 L~--D~~~~l~k~~~~Gi~~~~~i~~f~kERa~IEkeYakkL~~L~kKy~~kk~~~~~~~~~~t~~~aw~~~l~e~~~~A 80 (253)
T cd07676 3 LW--DQFDNLEKHTQWGIEVLEKYIKFVKERTEIELSYAKQLRNLSKKYQPKKNSKEEEEYKYTSCRAFLMTLNEMNDYA 80 (253)
T ss_pred hH--HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHH
Confidence 46 49999999999999999999999999999999999999999999987652 232 256653 2
Q ss_pred HHHHHhhh----------------hh-HHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcccCCCC
Q psy5492 108 TYHKTVLH----------------IK-ERKEMEDAFKKAQKPWCKLLTKVNKTKNDYHVACKAERSASNQERNASADSSL 170 (361)
Q Consensus 108 ~~H~qL~~----------------~K-E~K~~e~~~~KaqK~~~~~~~kl~KaKK~Y~~~Ckee~~a~~~e~~a~~d~~~ 170 (361)
..|..+.. +| ++|.....+.++|++|.+.++.|++||++|+.+|++++.|+.+..++++|+++
T Consensus 81 ~~H~~~~~~L~~~v~~~l~~~~~~~k~~rK~~~~~~~k~qk~~~~~~~~lekaKk~Y~~acke~E~A~~~~~ka~~d~~~ 160 (253)
T cd07676 81 GQHEVISENLASQIIVELTRYVQELKQERKSHFHDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYFEKMDADINV 160 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccC
Confidence 45664432 23 34677777789999999999999999999999999999998888888889999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5492 171 SMDQLKKMQDRVQKAKEEVQKAKEKYELALQELNSYN-PKYMEDMSVVFDKCQEMETTRLQFFKDSLFSIHKCL 243 (361)
Q Consensus 171 s~ke~eKl~~K~~K~~~~~~kak~eY~~~l~~ln~~r-~~yeeeM~~~~d~~Q~lEe~RI~flK~~L~~y~~~l 243 (361)
++.+++|++.++.++.+.+++++++|...|+.+|+.+ ++|+++||.+|+.||+||+.||.+|+++|..|..+.
T Consensus 161 sk~~~eK~k~~~~~~~~~~e~aKn~Y~~~l~~~N~~q~~~Y~e~mp~vfd~lQ~lee~Ri~~l~e~l~~~~~~e 234 (253)
T cd07676 161 TKADVEKARQQAQIRHQMAEDSKAEYSSYLQKFNKEQHEHYYTHIPNIFQKIQEMEERRIGRVGESMKTYAEVD 234 (253)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999977 799999999999999999999999999999997666
No 16
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=100.00 E-value=6.5e-33 Score=261.86 Aligned_cols=198 Identities=23% Similarity=0.374 Sum_probs=175.3
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-----hhhh-hhHhH--------HHH
Q psy5492 44 FWEPGNYKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNKKWNELIE-----KVMR-TCWQK--------DTY 109 (361)
Q Consensus 44 FWg~~Gy~~l~krik~G~~~ckeL~~flKERA~IEeeYAK~L~kLaKK~~~~~e-----~g~l-~aWq~--------~~~ 109 (361)
+|+ ||+.|.+|+.+|+++|++|..||++||+||++||++|.+|+++|.+... .+++ .+|.. +..
T Consensus 3 L~d--~~~~l~~~~~~g~~~~~~l~~f~keRa~iE~eYak~L~kLa~k~~~~~~~~~~~~~s~~~aw~~i~~e~~~~a~~ 80 (251)
T cd07653 3 LWD--QFDNLEKHTQKGIDFLERYGKFVKERAAIEQEYAKKLRKLVKKYLPKKKEEDEYSFSSVKAFRSILNEVNDIAGQ 80 (251)
T ss_pred chh--hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccccHHHHHHHHHHHHHHHHHH
Confidence 685 9999999999999999999999999999999999999999999986542 2233 66654 357
Q ss_pred HHHhhh------------h-----hHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcccCCCCCH
Q psy5492 110 HKTVLH------------I-----KERKEMEDAFKKAQKPWCKLLTKVNKTKNDYHVACKAERSASNQERNASADSSLSM 172 (361)
Q Consensus 110 H~qL~~------------~-----KE~K~~e~~~~KaqK~~~~~~~kl~KaKK~Y~~~Ckee~~a~~~e~~a~~d~~~s~ 172 (361)
|.+++. | +.+|.+.+.+.+++++|.+.+..++|+|++|+.+|++.+.|..+...+..++..++
T Consensus 81 H~~~a~~l~~~v~~~l~~~~~~~~~~rK~~~~~~~kl~~~~~~~~~~l~kskk~Y~~~~ke~~~a~~k~~~~~~~~~~s~ 160 (251)
T cd07653 81 HELIAENLNSNVCKELKTLISELRQERKKHLSEGSKLQQKLESSIKQLEKSKKAYEKAFKEAEKAKQKYEKADADMNLTK 160 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccch
Confidence 776643 1 23588999999999999999999999999999999998877666666666777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5492 173 DQLKKMQDRVQKAKEEVQKAKEKYELALQELNSY-NPKYMEDMSVVFDKCQEMETTRLQFFKDSLFSIHKCL 243 (361)
Q Consensus 173 ke~eKl~~K~~K~~~~~~kak~eY~~~l~~ln~~-r~~yeeeM~~~~d~~Q~lEe~RI~flK~~L~~y~~~l 243 (361)
++++|++.++.++.+++.+|+++|..+|..+|.. +.+|.++||.+|+.||++|+.||.+|+++|+.|+++.
T Consensus 161 ~~~eK~~~k~~k~~~~~~~a~~~Y~~~l~~~N~~~~~~y~~~~p~~~~~~q~le~~ri~~~k~~l~~~~~~~ 232 (251)
T cd07653 161 ADVEKAKANANLKTQAAEEAKNEYAAQLQKFNKEQRQHYSTDLPQIFDKLQELDEKRINRTVELLLQAAEIE 232 (251)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999996 5699999999999999999999999999999998877
No 17
>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=100.00 E-value=1.3e-32 Score=260.34 Aligned_cols=197 Identities=18% Similarity=0.311 Sum_probs=169.3
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh------hhh-hhHhHH--------H
Q psy5492 44 FWEPGNYKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNKKWNELIEK------VMR-TCWQKD--------T 108 (361)
Q Consensus 44 FWg~~Gy~~l~krik~G~~~ckeL~~flKERA~IEeeYAK~L~kLaKK~~~~~e~------g~l-~aWq~~--------~ 108 (361)
.| +||+.|.+|+.+|+.||+++..||+|||+||.+||++|++|+|+|.+.... ++. .+|... .
T Consensus 3 L~--Dqf~~~~k~~~~Gi~~l~~~~~F~keRa~IE~eYakkL~~L~Kky~~KK~~~~e~p~~t~~~s~~~~L~~~~~~a~ 80 (252)
T cd07675 3 LW--DQFDNLDKHTQWGIDFLERYAKFVKERLEIEQNYAKQLRNLVKKYCPKRSSKDEEPRFTSCLSFYNILNELNDYAG 80 (252)
T ss_pred hH--HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccccHHHHHHHHHHHHHHHHH
Confidence 46 499999999999999999999999999999999999999999999764321 111 444321 1
Q ss_pred HHHHh---------------hh-hh-HHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcccCCCCC
Q psy5492 109 YHKTV---------------LH-IK-ERKEMEDAFKKAQKPWCKLLTKVNKTKNDYHVACKAERSASNQERNASADSSLS 171 (361)
Q Consensus 109 ~H~qL---------------~~-~K-E~K~~e~~~~KaqK~~~~~~~kl~KaKK~Y~~~Ckee~~a~~~e~~a~~d~~~s 171 (361)
.|..+ +. ++ ++|.......++|++|.+.++.|++||++|+.+|++++.|+.+..+|..|++++
T Consensus 81 q~e~~a~~l~~~v~~~l~~~~~~l~~~rk~~~~~~~klqk~l~~~~~~leksKk~Y~~acke~E~A~~k~~ka~~d~~~t 160 (252)
T cd07675 81 QREVVAEEMGHRVYGELMRYSHDLKGERKMHLQEGRKAQQYLDMCWKQMDNSKKKFERECREAEKAQQSYERLDNDTNAT 160 (252)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccC
Confidence 22211 11 44 456666777899999999999999999999999999999988888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5492 172 MDQLKKMQDRVQKAKEEVQKAKEKYELALQELNSYNP-KYMEDMSVVFDKCQEMETTRLQFFKDSLFSIHKC 242 (361)
Q Consensus 172 ~ke~eKl~~K~~K~~~~~~kak~eY~~~l~~ln~~r~-~yeeeM~~~~d~~Q~lEe~RI~flK~~L~~y~~~ 242 (361)
+.+++|++.++..+.+.+++++++|...|+.+|+.++ +|+++||.+|+.||+||+.||.+|+++|..++..
T Consensus 161 k~~~eK~k~~~~~~~q~~e~aKn~Y~~~L~~~N~~q~k~Y~e~mP~vfd~lQ~leE~Ri~~l~e~~~~~~~~ 232 (252)
T cd07675 161 KSDVEKAKQQLNLRTHMADESKNEYAAQLQNFNGEQHKHFYIVIPQIYKQLQEMDERRTVKLSECYRGFADS 232 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999887 5999999999999999999999999999888543
No 18
>cd07650 F-BAR_Syp1p_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of yeast Syp1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Syp1p is associated with septins, a family of GTP-binding proteins that serve as elements of septin filaments, which are required for cell morphogenesis and division. Syp1p regulates cell-cycle dependent septin cytoskeletal dynamics in yeast. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCH domain Only (FCHO) proteins and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=99.97 E-value=2.2e-28 Score=229.34 Aligned_cols=210 Identities=15% Similarity=0.200 Sum_probs=156.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhHHhhhh-hhHhH--------HHHHHHhhh-h
Q psy5492 49 NYKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNKKWN--ELIEKVMR-TCWQK--------DTYHKTVLH-I 116 (361)
Q Consensus 49 Gy~~l~krik~G~~~ckeL~~flKERA~IEeeYAK~L~kLaKK~~--~~~e~g~l-~aWq~--------~~~H~qL~~-~ 116 (361)
..++|..||++|..+|+||.+||+|||.||++||++|++|+++|. +..+.|++ .+|.. +..|.+|++ +
T Consensus 6 a~~~l~~Rl~~~~~~~~el~~~~kERa~IE~~Yak~L~kLakk~~~~~~~e~g~~~~~w~~i~~e~e~~a~~H~~la~~l 85 (228)
T cd07650 6 ATEILRIRLSQIKLVNTELADWLQERRRLERQYVQGLRKLARRNEPLNKSLLGVFQNPWLTIESETEFIAASHGELAQRI 85 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999999999999999999999999999999995 56677877 66664 368888876 4
Q ss_pred hH-HhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5492 117 KE-RKEMEDAFKKAQKPWCKLLTKVNKTKNDYHVACKAERSASNQERNASADSSLSMDQLKKMQDRVQKAKEEVQKAKEK 195 (361)
Q Consensus 117 KE-~K~~e~~~~KaqK~~~~~~~kl~KaKK~Y~~~Ckee~~a~~~e~~a~~d~~~s~ke~eKl~~K~~K~~~~~~kak~e 195 (361)
+. .......|...++..... ..+ + ......+.. .-.++...|+..+..++......++
T Consensus 86 ~~~ve~~l~~~~~~~~~~~~l-~~~---q----~l~~~~k~~-----------~e~~k~~~Kl~kk~~k~~~~~~~~~-- 144 (228)
T cd07650 86 ETDVEEPLRDFATSTEFMNTL-DDD---Q----NLSNLAKEL-----------DESQKKWDKLKKKHSKASSKAVSAA-- 144 (228)
T ss_pred HHHHHHHHHHHHhcCHHHHHh-HHH---H----HHHHHHHHH-----------HHHHHHHHHHHHHhhhHHHHHHHHH--
Confidence 42 111112232222211111 111 0 000000000 0133555677777666655444332
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcchhhhhhhHHhHHHHhhhcCCCchhh
Q psy5492 196 YELALQELNSYNPKYMEDMSVVFDKCQEMETTRLQFFKDSLFSIHKCLNISQDPTVLHIKERKEMEDAFKKAQKPWCKTV 275 (361)
Q Consensus 196 Y~~~l~~ln~~r~~yeeeM~~~~d~~Q~lEe~RI~flK~~L~~y~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 275 (361)
+..++.++..|+.+||.+|+.||++|++||.|||++||.|+++++..+.
T Consensus 145 ----~~~l~~~~~~We~~~~~~~e~fQ~leeeRl~~lk~~l~~y~~~~sd~~~--------------------------- 193 (228)
T cd07650 145 ----VSDLEEARQQWDSQAPFLFELLQAIDEERLNHLKDVLLQFQTHESDYAL--------------------------- 193 (228)
T ss_pred ----HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHH---------------------------
Confidence 8999999999999999999999999999999999999999999965543
Q ss_pred HHHHhhhhhHHHHhhcCchhHHHhHHHHHHHHhhcCCChhhHHHHHHHHHhhCChHhHHHHHHhcCCCCCCC
Q psy5492 276 LHIKERKEMEDAFKKAQKPWCIMQHLKLICILKCCYSRLPQIYEEFYHTINNADHEKDLKWWSNNHGVNMAM 347 (361)
Q Consensus 276 ~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~g~~~~~ 347 (361)
+.++.||+++++|++||+++||..|++..|+|.+.
T Consensus 194 -------------------------------------~~~~~~E~~~~~l~~~~~e~dI~~F~~~~~~g~~~ 228 (228)
T cd07650 194 -------------------------------------RTTESAEECMNQLLEFDTEDEIQRFARKASAGRFA 228 (228)
T ss_pred -------------------------------------HhhHHHHHHHHHHhCCChHHHHHHHHHHccCCCCC
Confidence 78999999999999999999999999999999863
No 19
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=99.96 E-value=9.9e-27 Score=219.28 Aligned_cols=203 Identities=16% Similarity=0.218 Sum_probs=172.2
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-H---hhhh--hhHhHH--------HH
Q psy5492 44 FWEPGNYKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNKKWNELI-E---KVMR--TCWQKD--------TY 109 (361)
Q Consensus 44 FWg~~Gy~~l~krik~G~~~ckeL~~flKERA~IEeeYAK~L~kLaKK~~~~~-e---~g~l--~aWq~~--------~~ 109 (361)
+||+.|-+.|+++.+.|++|+++|..|+++||+||.+||+.|.+|++++.... + .|+. .+|+.. ..
T Consensus 1 ~~~~~~h~~l~~~~~~ei~lLe~i~~F~reRa~iE~EYA~~L~~L~kq~~k~~~~~~~~~s~~~~sW~~iL~ete~~A~~ 80 (237)
T cd07657 1 LQGQSGHEALLKRQDAELRLLETMKKYMAKRAKSDREYASTLGSLANQGLKIEAGDDLQGSPISKSWKEIMDSTDQLSKL 80 (237)
T ss_pred CCCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcCCCcccCCcChHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999974321 1 1222 678743 23
Q ss_pred HHHhhh----------------hh-HHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcccCCCCCH
Q psy5492 110 HKTVLH----------------IK-ERKEMEDAFKKAQKPWCKLLTKVNKTKNDYHVACKAERSASNQERNASADSSLSM 172 (361)
Q Consensus 110 H~qL~~----------------~K-E~K~~e~~~~KaqK~~~~~~~kl~KaKK~Y~~~Ckee~~a~~~e~~a~~d~~~s~ 172 (361)
|..++. .+ .+|.+.+...++++.+...+..|+|+|+.|+..|++.+.|+.+...+..+...+.
T Consensus 81 ~~~~ae~l~~~i~~~l~~l~~~~~~~rK~~~~~~~kl~~el~~~~~el~k~Kk~Y~~~~~e~e~Ar~k~e~a~~~~~~~~ 160 (237)
T cd07657 81 IKQHAEALESGTLDKLTLLIKDKRKAKKAYQEERQQIDEQYKKLTDEVEKLKSEYQKLLEDYKAAKSKFEEAVVKGGRGG 160 (237)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccch
Confidence 333321 11 3477777778999999999999999999999999998888776655555556788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy5492 173 DQLKKMQDRVQKAKEEVQKAKEKYELALQELNSYN-PKYMEDMSVVFDKCQEMETTRLQFFKDSLFSIHKCLNIS 246 (361)
Q Consensus 173 ke~eKl~~K~~K~~~~~~kak~eY~~~l~~ln~~r-~~yeeeM~~~~d~~Q~lEe~RI~flK~~L~~y~~~ld~~ 246 (361)
.+++|++.++.++..++.+|+++|..+|+.+|... .+|.++||.+++.+|+|+|.||..++++|..|+..-|+.
T Consensus 161 ~~~eKak~k~~~~~~k~~~akNeY~l~l~~aN~~q~~yY~~~lP~ll~~lQ~l~E~ri~~~k~~l~~~~~~~~~~ 235 (237)
T cd07657 161 RKLDKARDKYQKACRKLHLCHNDYVLALLEAQEHEEDYRTLLLPGLLNSLQSLQEEFITQWKKILQEYLRYSDLT 235 (237)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 99999999999999999999999999999999955 589999999999999999999999999999998877654
No 20
>KOG2398|consensus
Probab=99.94 E-value=2.7e-25 Score=232.46 Aligned_cols=228 Identities=25% Similarity=0.376 Sum_probs=179.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhh-hhHh--------HHHHHHHhhh-----hhHH-hHH
Q psy5492 58 EDGYKLCNDLIALIQERADIEKAYAKSLKGWNKKWNELIEKVMR-TCWQ--------KDTYHKTVLH-----IKER-KEM 122 (361)
Q Consensus 58 k~G~~~ckeL~~flKERA~IEeeYAK~L~kLaKK~~~~~e~g~l-~aWq--------~~~~H~qL~~-----~KE~-K~~ 122 (361)
++|...|++|..|++|||.||++|++.|.+++++..+..+.|++ ..|+ .+..|.+|+. +|+. |..
T Consensus 2 ~~g~~~~~~l~~F~~eRa~iE~~y~k~~~~l~~k~~~~~~~gs~~~~~~~~r~~~~~ma~~h~~l~~~l~~~i~~~~k~~ 81 (611)
T KOG2398|consen 2 KTGLRSTKELADFVRERASIEEDYAKRMGKLAAKAKSYTENGSFAESWLVMRTSTEAMAKSHLELSRELQDLIKDVAKYY 81 (611)
T ss_pred CcccchhhhHHHHHHHHHhhhHHHHHHHHHHhhccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999988888866 4443 4578998876 2221 222
Q ss_pred HHHHHHHhhH-------HHHHHHHHHHHHHHHHHHHHHHHHH-hHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy5492 123 EDAFKKAQKP-------WCKLLTKVNKTKNDYHVACKAERSA-SNQERNASADSSLSMDQLKKMQDRVQKAKEEVQKAKE 194 (361)
Q Consensus 123 e~~~~KaqK~-------~~~~~~kl~KaKK~Y~~~Ckee~~a-~~~e~~a~~d~~~s~ke~eKl~~K~~K~~~~~~kak~ 194 (361)
++.. +.++. .....+-..+++..|+..|.....+ +.++. ...+...|-+.++.|++..+.+++.
T Consensus 82 ~~~~-k~~k~~~~~~v~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~e~-------e~~~~~~k~~~~~~k~~~~i~~~~~ 153 (611)
T KOG2398|consen 82 AEQL-KTRKKSKEEGVEKLKQDQSKKKAKDTYEVLCAKSNYLHRCQEK-------ESLKEKEKRKKELAKAELKIKEARE 153 (611)
T ss_pred HHHH-HHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh-------hhcccccchhhHHHHHHHHHHHHHH
Confidence 2211 11111 1122233334677888888774422 22221 1223333446777889999999999
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcchhhhhhhHHhHHHHhhhcCCCchh
Q psy5492 195 KYELALQELNSYNPKYMEDMSVVFDKCQEMETTRLQFFKDSLFSIHKCLNISQDPTVLHIKERKEMEDAFKKAQKPWCKT 274 (361)
Q Consensus 195 eY~~~l~~ln~~r~~yeeeM~~~~d~~Q~lEe~RI~flK~~L~~y~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 274 (361)
+|+..+..++.++.+|+++|..+|..||++|+.|+.|||+.||.|.+.+..+++
T Consensus 154 ~y~~~~~~~~~vr~~w~~~~~~~c~~fQ~~Ee~rl~~lk~~l~~~~~~is~~~~-------------------------- 207 (611)
T KOG2398|consen 154 EYRSLVAKLEKVRKDWEQEMTDLCLKFQEIEESRLSFLKEELWLFANQISESCV-------------------------- 207 (611)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------------------------
Confidence 999999999999999999999999999999999999999999999999977765
Q ss_pred hHHHHhhhhhHHHHhhcCchhHHHhHHHHHHHHhhcCCChhhHHHHHHHHHhhCChHhHHHHHHhcCCCCCCCCCc-chh
Q psy5492 275 VLHIKERKEMEDAFKKAQKPWCIMQHLKLICILKCCYSRLPQIYEEFYHTINNADHEKDLKWWSNNHGVNMAMNWP-QFE 353 (361)
Q Consensus 275 ~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~g~~~~~~~p-~f~ 353 (361)
.++|+||+|+++|++|.++.||..|+.++|||...+-| .|+
T Consensus 208 --------------------------------------~~~q~~E~~k~~le~~sv~~~i~~fv~~k~TGte~P~~i~~e 249 (611)
T KOG2398|consen 208 --------------------------------------KIDQVMEEFKLTLESCSVDEDITKFVEAKGTGTEKPEPIEFE 249 (611)
T ss_pred --------------------------------------chhHHHHHHHHhhccCCHHHHHHHHhhccCCCCCCCCCCCcc
Confidence 79999999999999999999999999999999988887 899
Q ss_pred hccc
Q psy5492 354 VRLS 357 (361)
Q Consensus 354 ~~~~ 357 (361)
.|.+
T Consensus 250 ~~~~ 253 (611)
T KOG2398|consen 250 NYYS 253 (611)
T ss_pred cccc
Confidence 8876
No 21
>cd07686 F-BAR_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fer (Fes related) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fer (Fes related) is a cytoplasmic (or nonreceptor) tyrosine kinase expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membran
Probab=99.93 E-value=9.2e-24 Score=198.13 Aligned_cols=194 Identities=18% Similarity=0.219 Sum_probs=155.9
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH----hhhh--hhHhHH--------HHHHH
Q psy5492 47 PGNYKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNKKWNELIE----KVMR--TCWQKD--------TYHKT 112 (361)
Q Consensus 47 ~~Gy~~l~krik~G~~~ckeL~~flKERA~IEeeYAK~L~kLaKK~~~~~e----~g~l--~aWq~~--------~~H~q 112 (361)
++|++.|.++...|++++++|..|+++||+||++||+.|.+|++++..... ..+. .+|+.. ..|..
T Consensus 4 ~~~~e~l~k~q~~ei~lLE~i~~f~~eRakiEkEYA~~L~~L~kq~~kk~~~~~~~~s~v~~sW~~vl~qte~iA~~~~~ 83 (234)
T cd07686 4 RNSHEALLKLQDWELRLLETVKKFMALRVKSDKEYASTLQNLCNQVDKESTSQLDYVSNVSKSWLHMVQQTEQLSKIMKT 83 (234)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999999999999999743211 1122 588753 23333
Q ss_pred hhh------------h-hH----HhHHHHHH-HHHhhHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHhhcccCCCCCHH
Q psy5492 113 VLH------------I-KE----RKEMEDAF-KKAQKPWCK-LLTKVNKTKNDYHVACKAERSASNQERNASADSSLSMD 173 (361)
Q Consensus 113 L~~------------~-KE----~K~~e~~~-~KaqK~~~~-~~~kl~KaKK~Y~~~Ckee~~a~~~e~~a~~d~~~s~k 173 (361)
++. + ++ +|.+ .++ .++++.+.. .+..|.|+|+.|++.|++.++|+.+...+ ....+
T Consensus 84 ~aE~l~~~i~~~l~~l~~~~~~~~k~~-~~~~~kl~~e~~~~~~~~l~K~K~~Y~~~~~~~e~ar~K~~~a----~~~gk 158 (234)
T cd07686 84 HAEELNSGPLHRLTMMIKDKQQVKKSY-IGVHQQIEAEMYKVTKTELEKLKCSYRQLTKEVNSAKEKYKDA----VAKGK 158 (234)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh----hhccc
Confidence 322 1 22 2444 444 678888875 78999999999999999988886554322 11224
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy5492 174 QLKKMQDRVQKAKEEVQKAKEKYELALQELNSYNP-KYMEDMSVVFDKCQEMETTRLQFFKDSLFSIHKCLNI 245 (361)
Q Consensus 174 e~eKl~~K~~K~~~~~~kak~eY~~~l~~ln~~r~-~yeeeM~~~~d~~Q~lEe~RI~flK~~L~~y~~~ld~ 245 (361)
..+|++.++.++..+++.++|+|..+|..+|..++ +|.+++|.+++.+|+++|.|+..++++|..|+.+.|+
T Consensus 159 ~~~Ka~~k~~~~~~km~~~kN~Yll~i~~aN~~k~~Yy~~~lP~lLd~lQ~l~E~rv~~ln~i~~e~~~~~~~ 231 (234)
T cd07686 159 ETEKARERYDKATMKLHMLHNQYVLAVKGAQLHQHQYYDFTLPLLLDSLQKMQEEMIKALKGILDEYSQITSL 231 (234)
T ss_pred chHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999999999999999776 8999999999999999999999999999999987754
No 22
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=99.91 E-value=2.7e-22 Score=188.90 Aligned_cols=192 Identities=11% Similarity=0.102 Sum_probs=148.7
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-----hhhh-hhHhHH--------HHHHH
Q psy5492 47 PGNYKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNKKWNELIE-----KVMR-TCWQKD--------TYHKT 112 (361)
Q Consensus 47 ~~Gy~~l~krik~G~~~ckeL~~flKERA~IEeeYAK~L~kLaKK~~~~~e-----~g~l-~aWq~~--------~~H~q 112 (361)
..||++|+.|+++|+.+|+||++||++||.||++||++|.+||+++.+... .|++ .+|... ..|.+
T Consensus 4 d~G~~~Ll~rlK~~~~~~ke~~~FlkkRa~iEeeYak~L~KLak~~~~~~~~~~~~~gs~~~a~~~il~~~e~lA~~h~~ 83 (234)
T cd07652 4 DVGLSTLLDRLKQSIASAKEFATFLKKRAAIEEEHARGLKKLARTTLDTYKRPDHKQGSFSNAYHSSLEFHEKLADNGLR 83 (234)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 369999999999999999999999999999999999999999999987542 4555 677643 34554
Q ss_pred hhh---------------h-hHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcc-cCCCCCHHHH
Q psy5492 113 VLH---------------I-KERKEMEDAFKKAQKPWCKLLTKVNKTKNDYHVACKAERSASNQERNAS-ADSSLSMDQL 175 (361)
Q Consensus 113 L~~---------------~-KE~K~~e~~~~KaqK~~~~~~~kl~KaKK~Y~~~Ckee~~a~~~e~~a~-~d~~~s~ke~ 175 (361)
++. + +.+|.+.+...++++.+...+..++|||..|+++|++.+.+.......+ .....+++..
T Consensus 84 ~a~~L~~~~~eL~~l~~~~e~~RK~~ke~~~k~~k~~~~a~~~leKAK~~Y~~~c~e~Ekar~~~~~~~~~~~~k~~~~~ 163 (234)
T cd07652 84 FAKALNEMSDELSSLAKTVEKSRKSIKETGKRAEKKVQDAEAAAEKAKARYDSLADDLERVKTGDPGKKLKFGLKGNKSA 163 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccccchhhH
Confidence 433 1 2347777777789999999999999999999999999765533211111 0111112222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5492 176 KKMQDRVQKAKEEVQKAKEKYELALQELNSYNP-KYMEDMSVVFDKCQEMETTRLQFFKDSLFSIHK 241 (361)
Q Consensus 176 eKl~~K~~K~~~~~~kak~eY~~~l~~ln~~r~-~yeeeM~~~~d~~Q~lEe~RI~flK~~L~~y~~ 241 (361)
.+.++ .+...+..|+++|...|+.+|..+. .|...+|.++..+|+|..++..-|+.-+..|+.
T Consensus 164 ~~~Ee---~~~~K~~~A~~~Y~~~v~~~n~~q~e~~~~~~p~i~~~lq~li~e~d~~l~~~~~~~~~ 227 (234)
T cd07652 164 AQHED---ELLRKVQAADQDYASKVNAAQALRQELLSRHRPEAVKDLFDLILEIDAALRLQYQKYAL 227 (234)
T ss_pred HHhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHhh
Confidence 22222 4666778899999999999999876 567899999999999999999999999999963
No 23
>cd07610 FCH_F-BAR The Extended FES-CIP4 Homology (FCH) or F-BAR (FCH and Bin/Amphiphysin/Rvs) domain, a dimerization module that binds and bends membranes. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. F-BAR domain containing proteins, also known as Pombe Cdc15 homology (PCH) family proteins, include Fes and Fer tyrosine kinases, PACSINs/Syndapins, FCHO, PSTPIP, CIP4-like proteins and srGAPs. Many members also contain an SH3 domain and play roles in endocytosis. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. These tubules have diameters larger than those observed with N-BARs. The F-BAR domains of some members such as NOSTRIN and Rgd1 are important for the subcellular localization of the protein.
Probab=99.91 E-value=1.6e-22 Score=182.66 Aligned_cols=162 Identities=28% Similarity=0.351 Sum_probs=124.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhh--hh-hhHhHH--------HHHHHhhh-h
Q psy5492 49 NYKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNKKWNELIEKV--MR-TCWQKD--------TYHKTVLH-I 116 (361)
Q Consensus 49 Gy~~l~krik~G~~~ckeL~~flKERA~IEeeYAK~L~kLaKK~~~~~e~g--~l-~aWq~~--------~~H~qL~~-~ 116 (361)
||++|.+|+++|+.+|++|.+||++||+||++||++|.+||+++.+..+.| ++ .+|... ..|.+++. +
T Consensus 1 g~~~l~~~~~~g~~~~~e~~~f~keRa~iE~eYak~L~kLak~~~~~~~~~~~t~~~~w~~~~~e~~~~a~~h~~~a~~l 80 (191)
T cd07610 1 GFELLEKRTELGLDLLKDLREFLKKRAAIEEEYAKNLQKLAKKFSKKPESGKTSLGTSWNSLREETESAATVHEELSEKL 80 (191)
T ss_pred CchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999998766555 55 677643 56766664 2
Q ss_pred h-HHhHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy5492 117 K-ERKEMEDAFKKAQKP-WCKLLTKVNKTKNDYHVACKAERSASNQERNASADSSLSMDQLKKMQDRVQKAKEEVQKAKE 194 (361)
Q Consensus 117 K-E~K~~e~~~~KaqK~-~~~~~~kl~KaKK~Y~~~Ckee~~a~~~e~~a~~d~~~s~ke~eKl~~K~~K~~~~~~kak~ 194 (361)
. ...+....+...++. ..+....+.++.+.|...+.... + ++++
T Consensus 81 ~~~i~~~~~~~~~~~~~~rk~~~~~~~~~~k~~~~~~~~~~----------------------------k------k~~~ 126 (191)
T cd07610 81 SQLIREPLEKVKEDKEQARKKELAEGEKLKKKLQELWAKLA----------------------------K------KADE 126 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------H------hhHH
Confidence 2 111111222222222 23334455555555554443211 1 6889
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy5492 195 KYELALQELNSYNPKYMEDMSVVFDKCQEMETTRLQFFKDSLFSIHKCLN 244 (361)
Q Consensus 195 eY~~~l~~ln~~r~~yeeeM~~~~d~~Q~lEe~RI~flK~~L~~y~~~ld 244 (361)
+|...|+++|..+..|+.+|...|..+|++|+.|+.+|+++|+.|++++.
T Consensus 127 ~y~~~~~~~~~~~~~~~~~~~~~~~~~q~~~e~r~~~~~~~l~~~~~~~~ 176 (191)
T cd07610 127 EYREQVEKLNPAQSEYEEEKLNKIQAEQEREEERLEILKDNLKNYINAIK 176 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999993
No 24
>cd07654 F-BAR_FCHSD The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains proteins (FCHSD). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of FCH and double SH3 domain (FCHSD) proteins, so named as they contain an N-terminal F-BAR domain and two SH3 domains at the C-terminus. Vertebrates harbor two subfamily members, FCHSD1 and FCHSD2, which have been characterized only in silico. Their biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=99.86 E-value=1.2e-19 Score=173.54 Aligned_cols=192 Identities=17% Similarity=0.246 Sum_probs=149.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH--h---------hhhhhHhHH--------HH
Q psy5492 49 NYKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNKKWNELIE--K---------VMRTCWQKD--------TY 109 (361)
Q Consensus 49 Gy~~l~krik~G~~~ckeL~~flKERA~IEeeYAK~L~kLaKK~~~~~e--~---------g~l~aWq~~--------~~ 109 (361)
+|+.|-.|+..|++|++||..|+++||+||.+||++|.+|++++.+... . .++.+|+.. ..
T Consensus 6 q~~~L~~~~~~~i~lLedi~~F~reRa~IE~EYa~~L~kLakky~~Kk~~~~~~~~~~~~~s~~~~W~~~L~qt~~~A~~ 85 (264)
T cd07654 6 QLSKLQAKHQTECDLLEDIRTYSQKKAAIEREYGQALQKLASQFLKREWPGSGELKPEDDRSGYTVWGAWLEGLDAVAQS 85 (264)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCccccccccchHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999999999999999999999999999976431 1 123677643 23
Q ss_pred HHHhhh------------hh-----HHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhh-----cccC
Q psy5492 110 HKTVLH------------IK-----ERKEMEDAFKKAQKPWCKLLTKVNKTKNDYHVACKAERSASNQERN-----ASAD 167 (361)
Q Consensus 110 H~qL~~------------~K-----E~K~~e~~~~KaqK~~~~~~~kl~KaKK~Y~~~Ckee~~a~~~e~~-----a~~d 167 (361)
|..++. ++ .+|...+...++|..+.+.+..|.++|+.|+.+|++...+..+... .+++
T Consensus 86 ~~~~ae~l~~~i~~~l~~l~~~~~~~~Kk~~e~~~~lq~el~~~~~eL~ksKK~Y~~~~~~~~~ar~K~~~a~~~~~k~~ 165 (264)
T cd07654 86 RQNRCEAYRRYISEPAKTGRSAKEQQLKKCTEQLQRAQAEVQQTVRELSKSRKTYFEREQVAHLAREKAADVQAREARSD 165 (264)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 333322 12 3477777778999999999999999999999999986555433322 1122
Q ss_pred CCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5492 168 SSL------SMDQLKKMQDRVQKAKEEVQKAKEKYELALQELNSYN-PKYMEDMSVVFDKCQEMETTRLQFFKDSLFSIH 240 (361)
Q Consensus 168 ~~~------s~ke~eKl~~K~~K~~~~~~kak~eY~~~l~~ln~~r-~~yeeeM~~~~d~~Q~lEe~RI~flK~~L~~y~ 240 (361)
.++ ..|..+|++.+...+...+.+|+++|..+|..+|... .+|.+++|.+++. |+..|+..|++.|..|+
T Consensus 166 ~~~~~sk~~~eK~~~K~~~k~~~~~~k~~~akNeYll~L~~aN~~q~kYY~~dLP~lld~---ld~~~~~~l~~~l~~~~ 242 (264)
T cd07654 166 LSIFQSRTSLQKASVKLSARKAECSSKATAARNDYLLNLAATNAHQDRYYQTDLPAIIKA---LDGELYDHLKDFLISLS 242 (264)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH---HhccHHHHHHHHHHHHH
Confidence 232 2455566677777778888999999999999999955 5999999999885 99999999999999997
Q ss_pred HHh
Q psy5492 241 KCL 243 (361)
Q Consensus 241 ~~l 243 (361)
..-
T Consensus 243 ~~e 245 (264)
T cd07654 243 HTE 245 (264)
T ss_pred HHH
Confidence 554
No 25
>cd07656 F-BAR_srGAP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs, all of which are expressed during embryonic and early development in the nervous system but with different localization and timing. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=99.84 E-value=1.4e-19 Score=171.21 Aligned_cols=174 Identities=21% Similarity=0.318 Sum_probs=138.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh-----------hhhhhHhHH--------H
Q psy5492 48 GNYKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNKKWNELIEK-----------VMRTCWQKD--------T 108 (361)
Q Consensus 48 ~Gy~~l~krik~G~~~ckeL~~flKERA~IEeeYAK~L~kLaKK~~~~~e~-----------g~l~aWq~~--------~ 108 (361)
++|+.|-.|+..|++++++|.+|+++||+||.+||+.|.+|++++.+.... .|..+|... .
T Consensus 5 dQ~~~L~~~te~~i~lLed~~~F~r~RaeIE~EYs~~L~kL~k~~~~K~~~~~~~~~~~~~~s~~~~W~~lL~qt~~~a~ 84 (241)
T cd07656 5 EQLKCLDLRTEAQVQLLADLQDYFRRRAEIELEYSRSLEKLADRFSSKHKNEKSKREDWSLLSPVNCWNTLLVQTKQESR 84 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccCcCCHHHHHHHHHHHHHHHHH
Confidence 389999999999999999999999999999999999999999998654211 123778754 2
Q ss_pred HHHHhhh-------------h----hHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcccCCC--
Q psy5492 109 YHKTVLH-------------I----KERKEMEDAFKKAQKPWCKLLTKVNKTKNDYHVACKAERSASNQERNASADSS-- 169 (361)
Q Consensus 109 ~H~qL~~-------------~----KE~K~~e~~~~KaqK~~~~~~~kl~KaKK~Y~~~Ckee~~a~~~e~~a~~d~~-- 169 (361)
.|..++. . +.+|...+...++|..+...+..|.++|++|+..|.+...|..+...+..+..
T Consensus 85 ~h~~lse~l~~~i~~~l~~l~~d~~~~~Kk~~e~~~~lq~el~~~~~eL~k~kK~Y~~~~~ea~~A~~K~~~ae~~~~k~ 164 (241)
T cd07656 85 DHSTLSDIYSNNLVQRLGQMSEDLQRISKKCREIGSQLHDELLRVLNELQTAMKTYHTYHAESKSAERKLKEAEKQEEKQ 164 (241)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3443322 1 23477777778999999999999999999999999996655443322222111
Q ss_pred ---------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHH
Q psy5492 170 ---------------LSMDQLKKMQDRVQKAKEEVQKAKEKYELALQELNS-YNPKYMEDMSVVFDKC 221 (361)
Q Consensus 170 ---------------~s~ke~eKl~~K~~K~~~~~~kak~eY~~~l~~ln~-~r~~yeeeM~~~~d~~ 221 (361)
.+.++++|.+.++..+...+.+|+++|..+|..+|. ...+|.+++|.+++-|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~eK~k~k~~~~~~k~~~akNeYll~l~~aN~~~~~yy~~~lp~lld~l 232 (241)
T cd07656 165 EQSPEKKLERSRSSKKIEKEVEKRQAKYSEAKLKCTKARNEYLLNLAAANATIHKYFVQDLSDLIDCM 232 (241)
T ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 134788999999999999999999999999999999 4558999999998865
No 26
>cd07678 F-BAR_FCHSD1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains 1 (FCHSD1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH and double SH3 domains 1 (FCHSD1) contains an N-terminal F-BAR domain and two SH3 domains at the C-terminus. It has been characterized only in silico, and its biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=99.83 E-value=2.7e-18 Score=163.71 Aligned_cols=192 Identities=17% Similarity=0.247 Sum_probs=147.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH---------hhhh----hhHhHHH----HHH
Q psy5492 49 NYKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNKKWNELIE---------KVMR----TCWQKDT----YHK 111 (361)
Q Consensus 49 Gy~~l~krik~G~~~ckeL~~flKERA~IEeeYAK~L~kLaKK~~~~~e---------~g~l----~aWq~~~----~H~ 111 (361)
+++.|-.|+..|+++++||.+|+++||+||.+||+.|.+|++++.+... .++. .+|...+ -|.
T Consensus 6 Q~~~L~~~~~~~~~~le~~~~f~k~R~~iE~eYa~~L~~L~k~~~~k~~~~~~~e~~~~~~~~s~~~~~~e~~~~a~Q~~ 85 (263)
T cd07678 6 QLSILQTKQQRDAELLEDIRSYSKQRAAIEREYGQALQRLASQFLKRDWHRGGNETEMDRSVRTVWGAWREGTAATGQGR 85 (263)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCchhhhhccccchHHHHHHHHHHHHHHHH
Confidence 6889999999999999999999999999999999999999999976441 0111 4444321 111
Q ss_pred --------Hhhh-----h-----hHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh-------hccc
Q psy5492 112 --------TVLH-----I-----KERKEMEDAFKKAQKPWCKLLTKVNKTKNDYHVACKAERSASNQER-------NASA 166 (361)
Q Consensus 112 --------qL~~-----~-----KE~K~~e~~~~KaqK~~~~~~~kl~KaKK~Y~~~Ckee~~a~~~e~-------~a~~ 166 (361)
+++. . .++|+..+...++|..+.+.++.|+++||.|+..|++...|..+.. .+..
T Consensus 86 ~~~~~~~~~~~~e~~~~~r~~ke~~~KK~~e~~~~lQ~eL~~~~keL~ksKK~Y~~~~~ea~~A~~K~~e~e~k~~K~~~ 165 (263)
T cd07678 86 VTRLEAYRRLRDEAGKTGRSAKEQVLKKSTEQLQKAQAELLETVKELSKSKKLYGQLERVSEVAKEKAADVEARLNKSDH 165 (263)
T ss_pred HHHHHHHHhhhhhHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 1111 1 2457777788899999999999999999999999999776644433 2222
Q ss_pred CCCCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5492 167 DSSLSMDQLKKMQDRV----QKAKEEVQKAKEKYELALQELNS-YNPKYMEDMSVVFDKCQEMETTRLQFFKDSLFSIHK 241 (361)
Q Consensus 167 d~~~s~ke~eKl~~K~----~K~~~~~~kak~eY~~~l~~ln~-~r~~yeeeM~~~~d~~Q~lEe~RI~flK~~L~~y~~ 241 (361)
+...+..+++|...|. ....+.+.+|+++|..+|..+|. +..+|..++|.+++.| +..|+..+++.|..++.
T Consensus 166 ~~~~sk~~~eK~~~K~~~~~~~~~~k~~~arNeYll~L~aaNa~q~~YY~~dLP~lld~l---D~~~~~~~~e~l~~~~~ 242 (263)
T cd07678 166 GIFHSKASLQKLSAKFSAQSAEYSQQLQAARNEYLLNLVAANAHLDHYYQEELPAIMKAL---DGDLYERLRDPLTSLSH 242 (263)
T ss_pred hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---HhhHHHHHHHHHHHHHH
Confidence 3334556667654443 55668889999999999999999 5569999999998877 88999999999999975
Q ss_pred Hh
Q psy5492 242 CL 243 (361)
Q Consensus 242 ~l 243 (361)
.-
T Consensus 243 ~e 244 (263)
T cd07678 243 TE 244 (263)
T ss_pred HH
Confidence 54
No 27
>cd07685 F-BAR_Fes The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), is a cytoplasmic (or nonreceptor) tyrosine kinase whose gene was first isolated from tumor-causing retroviruses. It is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells, and plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. Fes kinase has also been implicated as a tumor suppressor in colorectal cancer. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane def
Probab=99.78 E-value=7.8e-17 Score=149.98 Aligned_cols=197 Identities=13% Similarity=0.231 Sum_probs=157.8
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh--------h-hh-hhHhHH------
Q psy5492 44 FWEPGNYKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNKKWNELIEK--------V-MR-TCWQKD------ 107 (361)
Q Consensus 44 FWg~~Gy~~l~krik~G~~~ckeL~~flKERA~IEeeYAK~L~kLaKK~~~~~e~--------g-~l-~aWq~~------ 107 (361)
||.+.|-+.|+++-+...++++-+-.|+-.||.-.++||..|..++..-.+.... + +. .+|...
T Consensus 1 l~~~~~h~all~~qd~ElrllE~mk~~m~~raK~d~eya~~L~~~~~q~~k~~~~~~~~~~~~~s~i~~sW~~il~QTE~ 80 (237)
T cd07685 1 LWCPQGHAALLRLQDSELRLMEVMKKWMSQRAKSDREYSGMLHHMSAQVEKLDRSQHGALSMLSSPISQSWAVLVSQTET 80 (237)
T ss_pred CCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccccchhhhcccCChHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999999884321111 1 22 788754
Q ss_pred --HHHHHhhh-------------hhHH----hHHHHHHHHHhhHHHHHH-HHHHHHHHHHHHHHHHHHHHhHHHhhcccC
Q psy5492 108 --TYHKTVLH-------------IKER----KEMEDAFKKAQKPWCKLL-TKVNKTKNDYHVACKAERSASNQERNASAD 167 (361)
Q Consensus 108 --~~H~qL~~-------------~KE~----K~~e~~~~KaqK~~~~~~-~kl~KaKK~Y~~~Ckee~~a~~~e~~a~~d 167 (361)
..|.+++. +++. |.+......+...+.+.+ ..|+|+|+.|++.|++.++|+.+...
T Consensus 81 isk~~~~~Aeeln~~~~~kLs~L~~~k~~~rK~~~~~~q~i~~e~~~~t~~eveK~Kk~Y~~~c~~~e~AR~K~ek---- 156 (237)
T cd07685 81 LSQVLRKHAEDLNAGPLSKLSLLIRDKQQLRKTFSEQWQLLKQEYTKTTQQDIEKLKSQYRSLAKDSAQAKRKYQE---- 156 (237)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----
Confidence 23443322 2222 334444444455555555 68999999999999999888665543
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy5492 168 SSLSMDQLKKMQDRVQKAKEEVQKAKEKYELALQELNSYNP-KYMEDMSVVFDKCQEMETTRLQFFKDSLFSIHKCLNI 245 (361)
Q Consensus 168 ~~~s~ke~eKl~~K~~K~~~~~~kak~eY~~~l~~ln~~r~-~yeeeM~~~~d~~Q~lEe~RI~flK~~L~~y~~~ld~ 245 (361)
+.+.+..+|+.+|..++......++|+|...|..+|+.++ +|.+++|.+++.+|++.|.|+.+++++|..|+.+.|+
T Consensus 157 -as~~K~~~K~~EKy~~m~~KL~~~hN~YlL~I~~An~~kdkyy~q~lP~LLd~lQ~lnE~~v~~Ln~il~ey~~~t~~ 234 (237)
T cd07685 157 -ASKDKDRDKAKEKYVKSLWKLYALHNEYVLAVRAAQLHHQHHYQRILPGLLESLQSLHEEMVLILKEILQEYFEISSL 234 (237)
T ss_pred -cccchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466899999999999888889999999999999999887 8899999999999999999999999999999987754
No 28
>cd07677 F-BAR_FCHSD2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains 2 (FCHSD2). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH and double SH3 domains 2 (FCHSD2) contains an N-terminal F-BAR domain and two SH3 domains at the C-terminus. It has been characterized only in silico, and its biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=99.71 E-value=1.6e-15 Score=143.77 Aligned_cols=179 Identities=15% Similarity=0.208 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh-------h--h-------------hhhHhHH--------H
Q psy5492 59 DGYKLCNDLIALIQERADIEKAYAKSLKGWNKKWNELIEK-------V--M-------------RTCWQKD--------T 108 (361)
Q Consensus 59 ~G~~~ckeL~~flKERA~IEeeYAK~L~kLaKK~~~~~e~-------g--~-------------l~aWq~~--------~ 108 (361)
.-..|+.||..|++|||+||++||++|.+|+++|...... | | +.+|+.. .
T Consensus 5 ~e~~~LqDiqqFyreRs~IEkEYS~kL~kL~kky~~Kk~k~ss~lsvgd~p~~tpgsle~~~S~~~~W~~~L~~Te~~A~ 84 (260)
T cd07677 5 EQMTKLQAKHQAECKLLEDEREFSQKIAAIESEYAQKEQKLASQYLKSDWRGMKADERADYRSMYTVWKSFLEGTMQVAQ 84 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCccCCCCcchhhhhHHHHHHHHHHHHHHHHH
Confidence 4568999999999999999999999999999999864311 1 1 1678754 2
Q ss_pred HHHHhhh------------hh---H--HhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh-hcccCCC-
Q psy5492 109 YHKTVLH------------IK---E--RKEMEDAFKKAQKPWCKLLTKVNKTKNDYHVACKAERSASNQER-NASADSS- 169 (361)
Q Consensus 109 ~H~qL~~------------~K---E--~K~~e~~~~KaqK~~~~~~~kl~KaKK~Y~~~Ckee~~a~~~e~-~a~~d~~- 169 (361)
.|..+++ +| + +|...+.+.++|+.+...+.+|.|+||.|+..|+..+.++.+.. .+++..+
T Consensus 85 ~~~~~ae~l~~~~a~~~k~~r~~ke~~~Kk~~e~~~~lq~El~~~~~EL~KaKK~Y~~~cq~~e~~ReK~~~e~K~~~s~ 164 (260)
T cd07677 85 SRINICENYKNLISEPARTVRLYKEQQLKRCVDQLTKIQAELQETVKDLAKGKKKYFETEQMAHAVREKADIEAKSKLSL 164 (260)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccccc
Confidence 2333322 12 1 26666777889999999999999999999999998665544332 1121111
Q ss_pred -----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5492 170 -----LSMDQLKKMQDRVQKAKEEVQKAKEKYELALQELNSYNP-KYMEDMSVVFDKCQEMETTRLQFFKDSLFSIH 240 (361)
Q Consensus 170 -----~s~ke~eKl~~K~~K~~~~~~kak~eY~~~l~~ln~~r~-~yeeeM~~~~d~~Q~lEe~RI~flK~~L~~y~ 240 (361)
...|...|+..|...+.....+|+|+|..+|+.+|+..+ +|.+|+|++.+-| +-.=-..+++.|..++
T Consensus 165 ~qs~~slqK~~~K~~~k~~e~n~k~~~ARNeYLl~L~aaNa~~~kYY~~DLp~l~~~~---d~~~~~~~~~~l~~~~ 238 (260)
T cd07677 165 FQSRISLQKASVKLKARRSECNSKATHARNDYLLTLAAANAHQDRYYQTDLVNIMKAL---DGNVYDHLKDYLMAFS 238 (260)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhccHHHHHHHh---cchHHHHHHHHHHHHh
Confidence 224555566666666666666999999999999999555 8999999998844 3344445566665553
No 29
>KOG3565|consensus
Probab=99.70 E-value=9.7e-16 Score=161.69 Aligned_cols=236 Identities=17% Similarity=0.144 Sum_probs=168.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhh---------------------hhHhH
Q psy5492 48 GNYKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNKKWNELIEKVMR---------------------TCWQK 106 (361)
Q Consensus 48 ~Gy~~l~krik~G~~~ckeL~~flKERA~IEeeYAK~L~kLaKK~~~~~e~g~l---------------------~aWq~ 106 (361)
+-|++|.+++.+|+++|+++++|++|||.+|+.|+++|..|++++......|.. .+|..
T Consensus 14 d~~~~~~~~~q~gL~~le~~~~~~~era~~ek~y~~~l~~l~~k~~~q~~~~d~v~~~~~~q~~~~~~lq~~~~i~~r~e 93 (640)
T KOG3565|consen 14 DAFKATEQSTQNGLDWLERIVQFLKERADKEKEYEEKLRSLCKKFEFQSKSGDEVAESVSGQPLFSELLQRAQQIATRLE 93 (640)
T ss_pred hHHHHHHHHHhhhHHHHHHHHHHhcchhHHHHHHHHHHHHhhhHhhcCCcccchHHHHhccCcchhHHHHHHHHHHHHHH
Confidence 489999999999999999999999999999999999999999965433222210 34433
Q ss_pred HH--------HHHHhhh-----hhH-HhHHHHHHHHHh---------hHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHh
Q psy5492 107 DT--------YHKTVLH-----IKE-RKEMEDAFKKAQ---------KPWCKLLTKVNKTKNDYHVACKA-ERSASNQER 162 (361)
Q Consensus 107 ~~--------~H~qL~~-----~KE-~K~~e~~~~Kaq---------K~~~~~~~kl~KaKK~Y~~~Cke-e~~a~~~e~ 162 (361)
.. -|..+.. ++. ++..+.....+. ....+.+..++++++.|+.+|.. .+.+...
T Consensus 94 ~l~~e~~~v~~~~~~t~k~~~~l~~~~~~~~s~~~~~~~~~~~~~~~ne~~~~~~~~~k~~~~~~ea~~~~~k~d~~l-- 171 (640)
T KOG3565|consen 94 ILKIEDEEVKKSLEATLKTSLDLVAQRKQLESDLFQARNTELLKSTVNEHEDSYYQLEKRRKDQEEAEQFFHKMDENL-- 171 (640)
T ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHhhhhh--
Confidence 21 1222211 221 133333332222 33444567778888888888877 3333221
Q ss_pred hcccCCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5492 163 NASADSSLSMDQLKKMQDRVQKAKEEVQK-AKEKYELALQELNSYNP-KYMEDMSVVFDKCQEMETTRLQFFKDSLFSIH 240 (361)
Q Consensus 163 ~a~~d~~~s~ke~eKl~~K~~K~~~~~~k-ak~eY~~~l~~ln~~r~-~yeeeM~~~~d~~Q~lEe~RI~flK~~L~~y~ 240 (361)
..+.-+++ .+.++...+..+.. .++.|...+.+.|..+. +|.+.+|.+++.+|.+++.|+..++.+|...+
T Consensus 172 ------~~s~~e~e-~~~~~~~~~~~m~e~~~~~~~~~~~k~n~~q~~~~~q~iP~i~d~~~~l~~~~~l~~~~i~~k~s 244 (640)
T KOG3565|consen 172 ------EGSRLELE-KARKLALLREEMLEGSKQDYLSLLRKFNHVQKQYYFQFIPLIVDSLQRLEERRGLRLEGILRKVS 244 (640)
T ss_pred ------hhhhhHHH-HHHHHHHHHHHHHhhhhHHHHHHHHHhcCccccCCcccccHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 22333333 33444555555544 45666789999999665 99999999999999999999999999999887
Q ss_pred HHh-ccccCcchhhhhhhHHhHHHHhhhcCCCchhhHHHHh----hhhhHHHHhhcCchhHH
Q psy5492 241 KCL-NISQDPTVLHIKERKEMEDAFKKAQKPWCKTVLHIKE----RKEMEDAFKKAQKPWCI 297 (361)
Q Consensus 241 ~~l-d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~k~----~~~~~~~~~~~~~~~~~ 297 (361)
..- ++ ++.+...+.-+-..+.++.|.++++||||+ +.+|+||.+++++.|+-
T Consensus 245 ~~e~~v-----~~~~~k~~~g~~~~~~~~~~~~dSa~vlk~~~~~le~P~~f~~e~~~~~~~ 301 (640)
T KOG3565|consen 245 GSESSV-----NDIISKCERGMRLAVGLNDPDLDSAGVLKLYFRGLEEPADFPFEDFGQPHD 301 (640)
T ss_pred HHHHHH-----HHHHHHHHhhhHhhhhccCcchhHHHHHHHHHccCCCcccCccccccchhh
Confidence 655 22 344556666688889999999999999999 99999999999999984
No 30
>cd07683 F-BAR_srGAP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs. srGAP1, also called Rho GTPase-Activating Protein 13 (ARHGAP13), is a Cdc42- and RhoA-specific GAP and is expressed later in the development of CNS (central nervous system) tissues. It is an important downstream signaling molecule of Robo1. srGAP1 contains an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-cha
Probab=99.56 E-value=1.1e-12 Score=123.56 Aligned_cols=170 Identities=25% Similarity=0.348 Sum_probs=114.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH---------hh-----hhhhHhHH-------
Q psy5492 49 NYKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNKKWNELIE---------KV-----MRTCWQKD------- 107 (361)
Q Consensus 49 Gy~~l~krik~G~~~ckeL~~flKERA~IEeeYAK~L~kLaKK~~~~~e---------~g-----~l~aWq~~------- 107 (361)
+.+.|-.+++--..|+.||.+||++||+||.+||++|.+||+++..... .| |...|+..
T Consensus 6 Qlkcld~~~e~~~~lLqDlqdF~RrRAeIE~EYS~~L~KLa~~f~~K~~s~~~~~~~~~~s~~~S~~~~W~~lL~qT~~~ 85 (253)
T cd07683 6 QQKCLEQQTEMRVQLLQDLQDFFRKKAEIESEYSRNLEKLAERFMAKTRSTKDHQQYKKDQNLLSPVNCWYLLLNQVRRE 85 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCCCcchhhHHHHHHHHHHHHHHH
Confidence 5677888999999999999999999999999999999999999986542 12 22788754
Q ss_pred -HHHHHhhh--------------------hhHHhHHHHHHHHHhhHHHHHHHHHH---HHHHHHHHHHHHHH----HHhH
Q psy5492 108 -TYHKTVLH--------------------IKERKEMEDAFKKAQKPWCKLLTKVN---KTKNDYHVACKAER----SASN 159 (361)
Q Consensus 108 -~~H~qL~~--------------------~KE~K~~e~~~~KaqK~~~~~~~kl~---KaKK~Y~~~Ckee~----~a~~ 159 (361)
.-|..|+. +|..|++ .-..|..+.+...+|. |....|+..|..++ .|..
T Consensus 86 sk~h~~LSd~y~~~~~~r~~~~~ed~~ri~kkskEi---~~~~~eeLlkV~~EL~t~mKtY~~y~~e~~~ae~Klk~ae~ 162 (253)
T cd07683 86 SKDHATLSDIYLNNVIMRFMQISEDSTRMFKKSKEI---AFQLHEDLMKVLNELYTVMKTYHMYHTESISAESKLKEAEK 162 (253)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444432 2222333 2255555555555544 44455554444322 2221
Q ss_pred H-Hhhc-c-cCCC----------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHH
Q psy5492 160 Q-ERNA-S-ADSS----------------LSMDQLKKMQDRVQKAKEEVQKAKEKYELALQELNS-YNPKYMEDMSVVFD 219 (361)
Q Consensus 160 ~-e~~a-~-~d~~----------------~s~ke~eKl~~K~~K~~~~~~kak~eY~~~l~~ln~-~r~~yeeeM~~~~d 219 (361)
+ +... + +++. ..++..+|.++|...+.....+|+|+|..+|..+|. ++.+|.++++.+.+
T Consensus 163 q~ek~~~ks~~~~~~~~~~~~~~r~~~~kk~~k~~eKrqaK~~e~klK~tkARNEYLL~L~AaNA~~~~Yy~~Dl~dLid 242 (253)
T cd07683 163 QEEKQIGRSGDPVFHIRLEDRHQRRSSVKKIEKMKEKRQAKYSENKLKSIKARNEYLLTLEATNASVFKYYIHDLSDLID 242 (253)
T ss_pred HHHHHhccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 1 1110 1 1110 114567778888999999999999999999999999 77799999988876
Q ss_pred HH
Q psy5492 220 KC 221 (361)
Q Consensus 220 ~~ 221 (361)
-|
T Consensus 243 c~ 244 (253)
T cd07683 243 CC 244 (253)
T ss_pred HH
Confidence 43
No 31
>cd07684 F-BAR_srGAP3 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Protein 3. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs. srGAP3, also called MEGAP (MEntal disorder associated GTPase-Activating Protein), is a Rho GAP with activity towards Rac1 and Cdc42. It impacts cell migration by regulating actin and microtubule cytoskeletal dynamics. The association between srGAP3 haploinsufficiency and mental retardation is under debate. srGAP3 contains an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers wit
Probab=99.52 E-value=3.8e-12 Score=119.73 Aligned_cols=170 Identities=25% Similarity=0.370 Sum_probs=113.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh-------h------hhhhHhHH--------
Q psy5492 49 NYKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNKKWNELIEK-------V------MRTCWQKD-------- 107 (361)
Q Consensus 49 Gy~~l~krik~G~~~ckeL~~flKERA~IEeeYAK~L~kLaKK~~~~~e~-------g------~l~aWq~~-------- 107 (361)
+.+.|-.+++.-+.|+.||.+|||+||+||.+||++|.+||+++...... | |+..|+..
T Consensus 6 Qlkcld~~~e~~i~~LqDLqdFyRrRAeIE~EYS~~L~KLA~~f~~K~~~~~~~~s~~d~~~~Sp~~~W~~lL~QT~~is 85 (253)
T cd07684 6 QFKCLEQQSESRLQLLQDLQEFFRRKAEIELEYSRSLEKLAERFSSKIRTSREHQFKKDQQLLSPVNCWYLVLEQTRRES 85 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCccCHHHHHHHHHHHHHHHH
Confidence 56778889999999999999999999999999999999999999765321 1 23788754
Q ss_pred HHHHHhhh--------------------hhHHhHHHHHHHHHhhHHHHHHHH---HHHHHHHHHHHHHHHH----HHhHH
Q psy5492 108 TYHKTVLH--------------------IKERKEMEDAFKKAQKPWCKLLTK---VNKTKNDYHVACKAER----SASNQ 160 (361)
Q Consensus 108 ~~H~qL~~--------------------~KE~K~~e~~~~KaqK~~~~~~~k---l~KaKK~Y~~~Ckee~----~a~~~ 160 (361)
.-|..|+. +|..|++ .-..|..+.+...+ ++|....|+..|..++ .|..+
T Consensus 86 kdh~~LSd~y~~~~~~rl~~~~ed~~Ri~kkskEi---~~~~~eeLlkV~~EL~t~mKTY~~y~~e~~~ae~KL~eaE~q 162 (253)
T cd07684 86 RDHATLNDIFNNNVIVRLSQISEDVIRLFKKSKEI---GLQMHEELLKVTNELYTVMKTYHMYHAESISAESKLKEAEKQ 162 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34444422 2222333 22355555555444 4555555555555422 11111
Q ss_pred Hhhc--cc-CC--------CCC---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHH
Q psy5492 161 ERNA--SA-DS--------SLS---------MDQLKKMQDRVQKAKEEVQKAKEKYELALQELNS-YNPKYMEDMSVVFD 219 (361)
Q Consensus 161 e~~a--~~-d~--------~~s---------~ke~eKl~~K~~K~~~~~~kak~eY~~~l~~ln~-~r~~yeeeM~~~~d 219 (361)
+... ++ +. +.. .+.++|.++|...+.....+|+|+|..+|..+|. +..+|..+++.+.+
T Consensus 163 ~~k~~~k~~~~~~~~~r~e~~~~~rss~kK~~r~~eKrqaK~~e~klK~~~arNeYll~l~a~Na~~~~yy~~dl~~l~~ 242 (253)
T cd07684 163 EEKQFNKSGDISSNLLRHEERPQRRSSVKKIEKMKEKRQAKYSENKLKCTKARNDYLLNLAATNAAVSKYYIHDVSDLID 242 (253)
T ss_pred HHHHhccccchhhhhccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 1110 11 10 001 2445788889999999999999999999999999 77789999888776
Q ss_pred HH
Q psy5492 220 KC 221 (361)
Q Consensus 220 ~~ 221 (361)
-|
T Consensus 243 c~ 244 (253)
T cd07684 243 CC 244 (253)
T ss_pred HH
Confidence 43
No 32
>cd07682 F-BAR_srGAP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs. srGAP2 is expressed in zones of neuronal differentiation. It plays a role in the regeneration of neurons and axons. srGAP2 contains an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=99.50 E-value=2.5e-12 Score=121.18 Aligned_cols=172 Identities=23% Similarity=0.308 Sum_probs=117.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh-------h------hhhhHhHH--------
Q psy5492 49 NYKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNKKWNELIEK-------V------MRTCWQKD-------- 107 (361)
Q Consensus 49 Gy~~l~krik~G~~~ckeL~~flKERA~IEeeYAK~L~kLaKK~~~~~e~-------g------~l~aWq~~-------- 107 (361)
+.+-|-.+++--+.|+.||.+||++||+||.+||++|.+||+++...... | |+..|+..
T Consensus 6 Qlkcld~q~e~~i~lLqDLqdFyRrRAeIE~EYS~~L~KLA~~f~~K~~~~~~~~s~~d~~~~Sp~~~W~~lL~QT~~~S 85 (263)
T cd07682 6 QLKCLDQQCELRVQLLQDLQDFFRKKAEIEMDYSRNLEKLAERFLAKTRSTKDQQFKKDQNVLSPVNCWNLLLNQVKRES 85 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCccCHHHHHHHHHHHHHHHH
Confidence 56778889999999999999999999999999999999999999875421 1 23788754
Q ss_pred HHHHHhhh-h----------------hHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH---HHHHH----HHhHH-Hh
Q psy5492 108 TYHKTVLH-I----------------KERKEMEDAFKKAQKPWCKLLTKVNKTKNDYHVA---CKAER----SASNQ-ER 162 (361)
Q Consensus 108 ~~H~qL~~-~----------------KE~K~~e~~~~KaqK~~~~~~~kl~KaKK~Y~~~---Ckee~----~a~~~-e~ 162 (361)
.-|..|+. + |-.|+.-+..-..|..+.+...+|..+.|+||.- |..++ .|..+ +.
T Consensus 86 kdh~~LSd~y~~~~~~rl~~~~ed~~Ri~KksKEi~~q~~eeLlkV~~ELqt~mktYh~y~~e~~~ae~Klk~aE~q~ek 165 (263)
T cd07682 86 RDHATLSDIYLNNIIPRFVQISEDSGRLFKKSKEVGLQLQEDLMKVLNELYTVMKTYHMYNADSISAQSKLKEAEKQEEK 165 (263)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444432 1 1112222223347888888899999999999852 33211 11111 11
Q ss_pred h----cc---------cCCCC----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhHHH
Q psy5492 163 N----AS---------ADSSL----------------SMDQLKKMQDRVQKAKEEVQKAKEKYELALQELNS-YNPKYME 212 (361)
Q Consensus 163 ~----a~---------~d~~~----------------s~ke~eKl~~K~~K~~~~~~kak~eY~~~l~~ln~-~r~~yee 212 (361)
. +. .++.. ..+.++|=++|+........+|+|+|..+|..+|. ++.+|.+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rrs~~kk~~r~~ekrq~Ky~e~kLK~~KARNeYlL~L~a~Na~~~kYy~~ 245 (263)
T cd07682 166 QMSRSVRQEDRQTPRSPDSTTNIRIEEKHVRRSSVKKIEKMKEKRQAKYTENKLKAIKARNEYLLALEATNASVFKYYIH 245 (263)
T ss_pred HhcccccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence 0 00 01111 12334566777777888999999999999999999 7779998
Q ss_pred HHHHHHHH
Q psy5492 213 DMSVVFDK 220 (361)
Q Consensus 213 eM~~~~d~ 220 (361)
+++.+.|=
T Consensus 246 dlsdLiDC 253 (263)
T cd07682 246 DLSDLIDC 253 (263)
T ss_pred hhHHHHHH
Confidence 88877653
No 33
>PF00611 FCH: Fes/CIP4, and EFC/F-BAR homology domain; InterPro: IPR001060 The FCH domain is a short conserved region of around 60 amino acids first described as a region of homology between FER and CIP4 proteins []. Many proteins containing an FCH domain are involved in the regulation of cytoskeletal rearrangements, vesicular transport and endocytosis. In the CIP4 protein the FCH domain binds to microtubules []. The FCH domain is always found N-terminally and is followed by a coiled-coil region. Proteins containing an FCH domain can be divided in 3 classes []: A subfamily of protein kinases usually associated with an SH2 domain: Fps/fes (Fujimani poultry sarcoma/feline sarcoma) proto-oncogenes. They are non-receptor protein-tyrosine kinases preferentially expressed in myeloid lineage. The viral oncogene has an unregulated kinase activity which abrogates the need for cytokines and influences differentiation of haematopoietic progenitor cells. Fes related protein (fer). It is an ubiquitously expressed homologue of Fes. Adaptor proteins usually associated with a C-terminal SH3 domain: Schizosaccharomyces pombe CDC15 protein. It mediates cytoskeletal rearrangements required for cytokinesis. It is essential for viability. CD2 cytoplasmic domain binding protein. Mammalian Cdc42-interacting protein 4 (CIP4). It may act as a link between Cdc42 signaling and regulation of the actin cytoskeleton. Mammalian PACSIN proteins. A family of cytoplasmic phosphoproteins playing a role in vesicle formation and transport. A subfamily of Rho-GAP proteins: Mammalian RhoGAP4 proteins. They may down-regulate Rho-like GTPases in hematopoietic cells. Yeast hypothetical protein YBR260C. Caenorhabditis elegans hypothetical protein ZK669.1. ; PDB: 2EFK_A 2EFL_A 2X3W_A 2X3X_C 2X3V_C 3I2W_A 3ABH_B 3Q0K_B 3HAJ_A 3ACO_B ....
Probab=99.50 E-value=1.4e-13 Score=109.85 Aligned_cols=65 Identities=32% Similarity=0.591 Sum_probs=56.9
Q ss_pred cCCCCCc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh----hhh-hhHhH
Q psy5492 42 DSFWEPG--NYKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNKKWNELIEK----VMR-TCWQK 106 (361)
Q Consensus 42 ~sFWg~~--Gy~~l~krik~G~~~ckeL~~flKERA~IEeeYAK~L~kLaKK~~~~~e~----g~l-~aWq~ 106 (361)
++||++. ||++|.+|+++|+.+|++|.+||+|||.||++||++|.+|++++.+.... +++ .+|..
T Consensus 1 ~~F~~~~~~g~~~l~~~~~~~~~~~~~l~~~~keRa~lE~~Yak~L~kl~~~~~~~~~~~~~~~t~~~~~~~ 72 (91)
T PF00611_consen 1 MSFWSDLWDGFEVLFKRLKQGIKLLEELASFFKERASLEEEYAKSLQKLAKKFKKKMKSSQEYGTLKNAWDS 72 (91)
T ss_dssp TCTTSTTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS-HHHHHHHHH
T ss_pred CCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccHHHHHHHH
Confidence 5899995 99999999999999999999999999999999999999999999865432 444 66654
No 34
>smart00055 FCH Fes/CIP4 homology domain. Alignment extended from original report. Highly alpha-helical. Also known as the RAEYL motif or the S. pombe Cdc15 N-terminal domain.
Probab=99.47 E-value=1.2e-13 Score=110.10 Aligned_cols=66 Identities=32% Similarity=0.502 Sum_probs=56.1
Q ss_pred cCCCCCc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hHHhhhh-hhHhHH
Q psy5492 42 DSFWEPG--NYKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNKKWNE----LIEKVMR-TCWQKD 107 (361)
Q Consensus 42 ~sFWg~~--Gy~~l~krik~G~~~ckeL~~flKERA~IEeeYAK~L~kLaKK~~~----~~e~g~l-~aWq~~ 107 (361)
++||++. ||++|..|+++|+.+|+||..|+++||+||++||++|.+|++++.. ..+.|++ .+|...
T Consensus 1 ~~f~~~~~~g~~~L~~~~~~~~~~~~~~~~f~~~Ra~iE~eYak~L~kL~~~~~~~~~~~~~~~s~~~aw~~~ 73 (87)
T smart00055 1 MGFWSELDDGFEALLSRLKNGLRLLEDLKKFIRERAKIEEEYAKKLQKLSKKLRAVRDTESEYGSLSKSWEVL 73 (87)
T ss_pred CCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcchhHHHHHHHH
Confidence 4799985 9999999999999999999999999999999999999999997542 2333455 777654
No 35
>KOG4429|consensus
Probab=98.60 E-value=1.8e-06 Score=83.06 Aligned_cols=153 Identities=19% Similarity=0.227 Sum_probs=121.4
Q ss_pred HhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5492 119 RKEMEDAFKKAQKPWCKLLTKVNKTKNDYHVACKA-ERSASNQERNASADSSLSMDQLKKMQDRVQKAKEEVQKAKEKYE 197 (361)
Q Consensus 119 ~K~~e~~~~KaqK~~~~~~~kl~KaKK~Y~~~Cke-e~~a~~~e~~a~~d~~~s~ke~eKl~~K~~K~~~~~~kak~eY~ 197 (361)
+|.+++.+++--..+.+......|+|+...-..+. +...+..+ .+ ....++++..|+..++.|....+.+.++.|-
T Consensus 34 ~kaaDNeVEkean~lidk~deqiKaKkkLmV~aKkheaL~kl~e-Sa--eqe~aekEkrKfa~klkKskdklekedddY~ 110 (421)
T KOG4429|consen 34 IKAADNEVEKEANKLIDKKDEQIKAKKKLMVLAKKHEALEKLEE-SA--EQEKAEKEKRKFALKLKKSKDKLEKEDDDYV 110 (421)
T ss_pred HHhhhhHHHHHHHHHhhhhhHHHHHHhhhhhhhhhHHHHHHHHH-HH--HHhhcchHHHHHHHHhhhhHHHHhhhhhhHH
Confidence 35555556655555566667777888776665543 33333322 11 2256788999999999999999999999999
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcchhhhhhhHHhHHHHhhhcCCCchhhHH
Q psy5492 198 LALQELNSYNPKYMEDMSVVFDKCQEMETTRLQFFKDSLFSIHKCLNISQDPTVLHIKERKEMEDAFKKAQKPWCKTVLH 277 (361)
Q Consensus 198 ~~l~~ln~~r~~yeeeM~~~~d~~Q~lEe~RI~flK~~L~~y~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 277 (361)
........+|..|+..+..+.+.+.++|.+||.++.+.|..|..++.+-. +
T Consensus 111 qknmag~kqRlk~ENtLekc~eSi~elEkeRia~~cnaL~qYkqhIelfG-~---------------------------- 161 (421)
T KOG4429|consen 111 QKNMAGEKQRLKTENTLEKCVESIEELEKERIAHCCNALGQYKQHIELFG-P---------------------------- 161 (421)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-c----------------------------
Confidence 99999999999999999999999999999999999999999999996543 2
Q ss_pred HHhhhhhHHHHhhcCchhHHHhHHHHHHHHhhcCCChhhHHHHHHHHHhhCChHhHHHHHH
Q psy5492 278 IKERKEMEDAFKKAQKPWCIMQHLKLICILKCCYSRLPQIYEEFYHTINNADHEKDLKWWS 338 (361)
Q Consensus 278 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~ 338 (361)
.+.|+|+...-.|+.+|.++|....-
T Consensus 162 -----------------------------------nLrqc~eq~hcaiekad~ekd~daim 187 (421)
T KOG4429|consen 162 -----------------------------------NLRQCFEQHHCAIEKADDEKDEDAIM 187 (421)
T ss_pred -----------------------------------hHHHHHHHhhhhHhhhcccccHHHHH
Confidence 68888999999999999998877653
No 36
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=97.16 E-value=0.14 Score=44.53 Aligned_cols=47 Identities=15% Similarity=0.201 Sum_probs=42.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy5492 49 NYKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNKKWNEL 95 (361)
Q Consensus 49 Gy~~l~krik~G~~~ckeL~~flKERA~IEeeYAK~L~kLaKK~~~~ 95 (361)
.|+.+-++++.-++.++.+.+...+.......+++.|.+++....+.
T Consensus 1 ~~~~~~~~~~kl~k~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 47 (194)
T cd07307 1 KLDELEKLLKKLIKDTKKLLDSLKELPAAAEKLSEALQELGKELPDL 47 (194)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc
Confidence 36778888999999999999999999999999999999999987654
No 37
>PF06730 FAM92: FAM92 protein; InterPro: IPR009602 This family consists of several eukaryotic sequences of around 270 residues in length. Members of this family are found in mouse, human and Drosophila melanogaster. The function of this family is unknown.
Probab=96.02 E-value=1.4 Score=41.58 Aligned_cols=26 Identities=12% Similarity=0.156 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5492 217 VFDKCQEMETTRLQFFKDSLFSIHKC 242 (361)
Q Consensus 217 ~~d~~Q~lEe~RI~flK~~L~~y~~~ 242 (361)
+-+..-.+|..||.-||.+|..|..+
T Consensus 165 Lee~i~~FEkqKl~DlK~i~sdFv~i 190 (219)
T PF06730_consen 165 LEETIDNFEKQKLKDLKKIFSDFVTI 190 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677889999999999988543
No 38
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=95.81 E-value=1.7 Score=40.75 Aligned_cols=35 Identities=6% Similarity=0.007 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5492 209 KYMEDMSVVFDKCQEMETTRLQFFKDSLFSIHKCL 243 (361)
Q Consensus 209 ~yeeeM~~~~d~~Q~lEe~RI~flK~~L~~y~~~l 243 (361)
+|..--..+-+.+..+|..|+..||.+|..|....
T Consensus 150 d~~r~s~~l~ee~~rFe~~k~~d~K~~l~~fv~~~ 184 (211)
T cd07598 150 DANRSTKELEEQMDNFEKQKIRDIKTIFSDFVLIE 184 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445556777889999999999999997666
No 39
>cd07634 BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domain of Rho GTPase activating protein 10-like. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This group is composed of uncharacterized proteins called Rho GTPase activating protein (GAP) 10-like. GAP10-like may be a GAP with activity towards RhoA and Cdc42. Similar to GRAF and GRAF2, it contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of the related proteins GRAF and OPHN1, directly interact with their Rho GAP domains and inhibit theiractivity. The autoinhibited proteins are capable of binding membranes and tubulating liposomes, showing that the membrane-tubulation and GAP-inhibitory functions of the BAR domain
Probab=93.37 E-value=7 Score=36.63 Aligned_cols=166 Identities=16% Similarity=0.166 Sum_probs=92.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh-------hhhhhH-----hHHHHHHHhhhhh
Q psy5492 50 YKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNKKWNELIEK-------VMRTCW-----QKDTYHKTVLHIK 117 (361)
Q Consensus 50 y~~l~krik~G~~~ckeL~~flKERA~IEeeYAK~L~kLaKK~~~~~e~-------g~l~aW-----q~~~~H~qL~~~K 117 (361)
-+.+-+-|+.=++.|+.+++-.++=......|+.+|..+.....+.... +++..+ ...++|..|++
T Consensus 11 l~~t~~~ik~liK~c~~li~A~k~~~~a~~~Fa~sL~~f~~~~igd~~tDde~~i~~~l~~Fs~~l~el~~~~~~L~~-- 88 (207)
T cd07634 11 LERTNKFIKELIKDGSLLIGALRNLSMAVQKFSQSLQDFQFECIGDAETDDEISIAQSLKEFARLLIAVEEERRRLIQ-- 88 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 4678888999999999999999999999999999999998766543211 011000 11234444432
Q ss_pred HHhHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5492 118 ERKEMEDAF-KKAQKPWCKLLTKVNKTKNDYHVACKAERSASNQERNASADSSLSMDQLKKMQDRVQKAKEEVQKAKEKY 196 (361)
Q Consensus 118 E~K~~e~~~-~KaqK~~~~~~~kl~KaKK~Y~~~Ckee~~a~~~e~~a~~d~~~s~ke~eKl~~K~~K~~~~~~kak~eY 196 (361)
.++..+ ..++.=+..-++.+..+||.|+....+-.++..+.-+... ...+-++ ..+..++
T Consensus 89 ---~~~~~l~~pL~~f~k~dl~~vKe~kK~FDK~se~y~~aleK~l~l~~--~kk~~~~-------~ea~~~l------- 149 (207)
T cd07634 89 ---NANDVLIAPLEKFRKEQIGAAKDGKKKFDKESEKYYSILEKHLNLSA--KKKESHL-------QRADTQI------- 149 (207)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHccchhHHHhHHHHHHHHHHhccc--cCCccHH-------HHHHHHH-------
Confidence 010000 0111112233455667788888877776655443322111 1111111 2233333
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh
Q psy5492 197 ELALQELNSYNPKYMEDMSVVFDKCQEMET-TRLQFFKDSLFSIHKCL 243 (361)
Q Consensus 197 ~~~l~~ln~~r~~yeeeM~~~~d~~Q~lEe-~RI~flK~~L~~y~~~l 243 (361)
...|..|...+-..+-++|.+++ +|..|+..++.-++.++
T Consensus 150 -------~~~R~~F~~~~ldYv~~i~~vq~kKkfefle~ll~~~~A~~ 190 (207)
T cd07634 150 -------DREHQNFYEASLEYVFKIQEVQEKKKFEFVEPLLAFLQGLF 190 (207)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555556666554 56777777666665555
No 40
>KOG2856|consensus
Probab=92.73 E-value=1.4 Score=44.48 Aligned_cols=27 Identities=48% Similarity=0.735 Sum_probs=21.8
Q ss_pred CchhhHH--HHhhhhhHHHHhhcCchhHH
Q psy5492 271 WCKTVLH--IKERKEMEDAFKKAQKPWCI 297 (361)
Q Consensus 271 ~~~~~~~--~k~~~~~~~~~~~~~~~~~~ 297 (361)
.+-+.|| +|+++|.||-|.|||+||.-
T Consensus 111 a~H~~vm~G~KE~ke~ED~FrKAQKPWaK 139 (472)
T KOG2856|consen 111 AYHKQVMGGFKETKEAEDGFRKAQKPWAK 139 (472)
T ss_pred hhHHHHhcchhhhHHHHHHHHhhcchHHH
Confidence 3444444 89999999999999999974
No 41
>cd07636 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion kinase. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase (GRAF), also called Rho GTPase activating protein 26 (ARHGAP26), is a GAP with activity towards RhoA and Cdc42 and is only weakly active towards Rac1. It influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase (FAK), which is a critical component of integrin signaling. GRAF contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of GRAF directly interacts with its Rho GAP domain and inhibits its activity. Autoinhibited GRAF is capable o
Probab=92.48 E-value=9.4 Score=35.78 Aligned_cols=109 Identities=13% Similarity=0.130 Sum_probs=69.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh-------hhh----hhHh-HHHHHHHhhh
Q psy5492 48 GNYKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNKKWNELIEK-------VMR----TCWQ-KDTYHKTVLH 115 (361)
Q Consensus 48 ~Gy~~l~krik~G~~~ckeL~~flKERA~IEeeYAK~L~kLaKK~~~~~e~-------g~l----~aWq-~~~~H~qL~~ 115 (361)
.+-+.|.++++.=++.|+.+++-.++=......++.+|..+.....|.... +++ .+-+ ..++|.-|+.
T Consensus 9 ~~le~~~k~ik~liK~~k~~i~A~k~~~~a~~~Fa~sL~~f~~~~~gd~~~dDe~~I~~~L~kF~~~L~ei~~~r~~L~~ 88 (207)
T cd07636 9 AELDKTNKFIKELIKDGKSLIAALKNLSSAKRKFADSLNEFKFQCIGDAETDDEICIARSLQEFAAVLRNLEDERTRMIE 88 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999999999999665432211 222 1111 1244444432
Q ss_pred hhHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy5492 116 IKERKEMEDAFKKAQKPWCKLLTKVNKTKNDYHVACKAERSASNQ 160 (361)
Q Consensus 116 ~KE~K~~e~~~~KaqK~~~~~~~kl~KaKK~Y~~~Ckee~~a~~~ 160 (361)
.-...+.. .+++=+..-.+.+..+||.|+....+.+++..+
T Consensus 89 -qa~~~l~~---~L~~F~kedi~~~Ke~kK~FdK~se~~~~al~k 129 (207)
T cd07636 89 -NASEVLIT---PLEKFRKEQIGAAKEAKKKYDKETEKYCAVLEK 129 (207)
T ss_pred -HHHHHHHH---HHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHHH
Confidence 00011111 122223344567788899999888777766433
No 42
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=92.27 E-value=9.7 Score=35.46 Aligned_cols=167 Identities=11% Similarity=0.077 Sum_probs=92.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhh-hh----hhHhH-HHHHHHhhhhhHHhH
Q psy5492 48 GNYKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNKKWNELIEKV-MR----TCWQK-DTYHKTVLHIKERKE 121 (361)
Q Consensus 48 ~Gy~~l~krik~G~~~ckeL~~flKERA~IEeeYAK~L~kLaKK~~~~~e~g-~l----~aWq~-~~~H~qL~~~KE~K~ 121 (361)
+..+.|-.+++.=++.|+.+++..+.=..-+..|+.+|..+..-..+....| ++ .+-+. .++|..|++ .
T Consensus 9 ~~~~~le~~l~kl~K~~k~~~~agk~~~~a~~~F~~~L~~f~~~~~~D~~i~~~l~kFs~~l~ei~~~~~~Ll~-----~ 83 (200)
T cd07639 9 AEVSELETRLEKLVKLGSGMLEGGRHYCAASRAFVDGLCDLAHHGPKDPMMAECLEKFSDGLNHILDSHAELLE-----A 83 (200)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHH-----H
Confidence 4567889999999999999999999999999999999999977443322222 22 11222 245554432 0
Q ss_pred HHHHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5492 122 MEDAF-KKAQKPWCKLLTKVNKTKNDYHVACKAERSASNQERNASADSSLSMDQLKKMQDRVQKAKEEVQKAKEKYELAL 200 (361)
Q Consensus 122 ~e~~~-~KaqK~~~~~~~kl~KaKK~Y~~~Ckee~~a~~~e~~a~~d~~~s~ke~eKl~~K~~K~~~~~~kak~eY~~~l 200 (361)
++..+ ..+++=...-++.+..+||.|+....+.+.+..+ +++.. -.-+.+ ++.+..
T Consensus 84 ~~~~l~~~L~~F~k~dl~~vKe~kK~FdK~s~~~d~al~K--~~~~~-k~k~~e-------~~Ea~~------------- 140 (200)
T cd07639 84 TQFSFKQQLQLLVKEDLRGFRDARKEFERGAESLEAALQH--NAETP-RRKAQE-------VEEAAA------------- 140 (200)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhhHhhcchhHHHHHHH--Hhhcc-ccchHH-------HHHHHH-------------
Confidence 11111 1112222233455677888888877776655332 22210 001111 122222
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh
Q psy5492 201 QELNSYNPKYMEDMSVVFDKCQEMET-TRLQFFKDSLFSIHKCL 243 (361)
Q Consensus 201 ~~ln~~r~~yeeeM~~~~d~~Q~lEe-~RI~flK~~L~~y~~~l 243 (361)
.+...|..|...+-..+-+++.++. +|..|+..++.-++.++
T Consensus 141 -~l~~~R~~F~~~~ldYV~~in~iq~kKkfefle~ll~~m~a~~ 183 (200)
T cd07639 141 -ALLGARATFRDRALDYALQINVIEDKKKFDILEFMLQLMEAQA 183 (200)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2344455555555566666666655 45556665555444444
No 43
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo
Probab=91.59 E-value=5.2 Score=37.92 Aligned_cols=53 Identities=11% Similarity=0.024 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5492 191 KAKEKYELALQELNSYNPKYMEDMSVVFDKCQEMETTRLQFFKDSLFSIHKCL 243 (361)
Q Consensus 191 kak~eY~~~l~~ln~~r~~yeeeM~~~~d~~Q~lEe~RI~flK~~L~~y~~~l 243 (361)
+..+.+...+.++......|..+.+.++..++....+++..|++++-.|..+-
T Consensus 171 k~~~Kl~~k~~ka~~~~~k~e~~y~~~~~~l~~~~~~~~~~~~~~~~~~Q~~E 223 (239)
T cd07658 171 KEDEKLEAKRKKGEESRLKAENEYYTCCVRLERLRLEWESALRKGLNQYESLE 223 (239)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567888888899999999999999999999999999999999999997555
No 44
>cd07635 BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase 2 (GRAF2), also called Rho GTPase activating protein 10 (ARHGAP10) or PS-GAP, is a GAP with activity towards Cdc42 and RhoA which regulates caspase-activated p21-activated protein kinase-2 (PAK-2p34). GRAF2 interacts with PAK-2p34, leading to its stabilization and decrease of cell death. It is highly expressed in skeletal muscle and also interacts with PKNbeta, which is a target of Rho. GRAF2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of the related prote
Probab=91.19 E-value=13 Score=34.80 Aligned_cols=113 Identities=16% Similarity=0.183 Sum_probs=72.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhh----hhHh-HHHHHHHhhhhhHH--hH
Q psy5492 49 NYKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNKKWNELIEKVMR----TCWQ-KDTYHKTVLHIKER--KE 121 (361)
Q Consensus 49 Gy~~l~krik~G~~~ckeL~~flKERA~IEeeYAK~L~kLaKK~~~~~e~g~l----~aWq-~~~~H~qL~~~KE~--K~ 121 (361)
.-+.+.+-++.=++.|+.+++-.++=......++.+|..+.....|.....+. .+-+ -+++|..|...++. ..
T Consensus 10 ~le~~~k~i~kLiK~c~~~i~a~k~~~~a~~~Fa~~L~~f~~~~~gd~~~dde~~i~~sl~ef~~~~~el~d~r~~L~~~ 89 (207)
T cd07635 10 ELERTNRFIKELLKDGKNLIAATKSLSAAQRKFAHSLRDFKFEFIGDAETDDERCIDASLQEFSNFLKNLEEQREIMALN 89 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999766442221111 1111 12344444432321 12
Q ss_pred HHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy5492 122 MEDAFK-KAQKPWCKLLTKVNKTKNDYHVACKAERSASNQE 161 (361)
Q Consensus 122 ~e~~~~-KaqK~~~~~~~kl~KaKK~Y~~~Ckee~~a~~~e 161 (361)
++..+. .+++=+..-+..+..+||.|+....+-++|..+.
T Consensus 90 ~~~~l~~pL~~F~kedl~~~Ke~KK~FdK~se~~~~Al~K~ 130 (207)
T cd07635 90 VTETLIKPLERFRKEQLGAVKEEKKKFDKETEKNYSLLEKH 130 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 222221 2222233446678889999999888877775543
No 45
>PF06456 Arfaptin: Arfaptin-like domain; InterPro: IPR010504 Arfaptin interacts with ARF1, a small GTPase involved in vesicle budding at the Golgi complex and immature secretory granules. The structure of arfaptin shows that upon binding to a small GTPase, arfaptin forms a an elongated, crescent-shaped dimer of three-helix coiled-coils []. The N-terminal region of ICA69 is similar to arfaptin [].; PDB: 1I4D_B 1I4L_B 1I49_B 1I4T_A 4DCN_D.
Probab=90.23 E-value=17 Score=34.47 Aligned_cols=165 Identities=15% Similarity=0.141 Sum_probs=89.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhHHhhhhhhHh-HHHHHHHhhh----h-hHHhH
Q psy5492 50 YKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNK--KWNELIEKVMRTCWQ-KDTYHKTVLH----I-KERKE 121 (361)
Q Consensus 50 y~~l~krik~G~~~ckeL~~flKERA~IEeeYAK~L~kLaK--K~~~~~e~g~l~aWq-~~~~H~qL~~----~-KE~K~ 121 (361)
|+.+-..-.+=.+.++.+..-+..-+..+.+.|.-|..++. +... .| .... -+..|..+.. + ...+.
T Consensus 42 l~~~~~~y~~L~~~~~~~~~~l~~l~q~q~~lg~~f~~~~~~e~~~~---l~--~~f~~~~~~~~~~~~~~~~L~~~l~~ 116 (229)
T PF06456_consen 42 LRDTQRTYRGLLKHARAYQNRLQALSQTQKELGDFFAELGVREKSPA---LG--EEFSANGEAQRSLAKQGETLLKALKR 116 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-CC---GH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHH---HH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555555666666667777777777777666 2111 01 0111 1123333322 1 11112
Q ss_pred HHHHH----HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5492 122 MEDAF----KKAQKPWCKLLTKVNKTKNDYHVACKAERSASNQERNASADSSLSMDQLKKMQDRVQKAKEEVQKAKEKYE 197 (361)
Q Consensus 122 ~e~~~----~KaqK~~~~~~~kl~KaKK~Y~~~Ckee~~a~~~e~~a~~d~~~s~ke~eKl~~K~~K~~~~~~kak~eY~ 197 (361)
+..++ .++-..-....+..+.+|-.|...|...+.....+ +|.. ..... +.+..+.....+++
T Consensus 117 ~~~~l~Tf~~kaI~DT~~Tik~ye~aR~EY~ay~~~lke~~~e~-----~~~~-~~~~~----~~r~~q~~~~~~k~--- 183 (229)
T PF06456_consen 117 FLSDLNTFRNKAIPDTLLTIKKYEDARFEYDAYRLWLKEMSDEL-----DPDT-AKQEP----KFRVAQGNYQEAKE--- 183 (229)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--T-----STSS-TTCHH----HHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-----Cchh-hcccc----hHHHHHHHHHHHHH---
Confidence 21222 23333334557788899999999999866543222 1111 11122 22233333333443
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5492 198 LALQELNSYNPKYMEDMSVVFDKCQEMETTRLQFFKDSLFSIHKCL 243 (361)
Q Consensus 198 ~~l~~ln~~r~~yeeeM~~~~d~~Q~lEe~RI~flK~~L~~y~~~l 243 (361)
.|..-=..++.+++-+++.|+..|...|..|++.+
T Consensus 184 -----------rf~kLr~Dv~~Kl~LL~~~rv~~~~~qL~~~~~al 218 (229)
T PF06456_consen 184 -----------RFDKLRSDVLVKLDLLDENRVNVMSHQLVLFQNAL 218 (229)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 44444457899999999999999999999999888
No 46
>cd07679 F-BAR_PACSIN2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 2 (PACSIN2). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 2 or Syndapin II is expressed ubiquitously and is involved in the regulation of tubulin polymerization. It associates with Golgi membranes and forms a complex with dynamin II which is crucial in promoting vesicle formation from the trans-Golgi network. PACSIN 2 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave su
Probab=90.23 E-value=1.4 Score=42.47 Aligned_cols=24 Identities=54% Similarity=0.888 Sum_probs=20.4
Q ss_pred hhHH--HHhhhhhHHHHhhcCchhHH
Q psy5492 274 TVLH--IKERKEMEDAFKKAQKPWCI 297 (361)
Q Consensus 274 ~~~~--~k~~~~~~~~~~~~~~~~~~ 297 (361)
..|| +|++++++|.|.|+|+||--
T Consensus 105 k~~~~~~Ke~k~~e~~f~KaQKpw~k 130 (258)
T cd07679 105 KQMMGGFKETKEAEDGFRKAQKPWAK 130 (258)
T ss_pred HHHHhhhHHHhHHHHHHHHHhhhHHH
Confidence 3444 89999999999999999963
No 47
>cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. The plant protein SCARFACE (SFC), also called VAscular Network 3 (VAN3), is a plant ACAP (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein), an Arf GTPase Activating Protein (GAP) that plays a role in the trafficking of auxin efflux regulators from the plasma membrane to the endosome. It is required for the normal vein patterning in leaves. SCF contains an N-terminal BAR domain, followed by a Pleckstrin Homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=89.68 E-value=17 Score=33.78 Aligned_cols=167 Identities=14% Similarity=0.189 Sum_probs=89.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh---h-hh----hhHh-HHHHHHHhhhhhHH
Q psy5492 49 NYKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNKKWNELIEK---V-MR----TCWQ-KDTYHKTVLHIKER 119 (361)
Q Consensus 49 Gy~~l~krik~G~~~ckeL~~flKERA~IEeeYAK~L~kLaKK~~~~~e~---g-~l----~aWq-~~~~H~qL~~~KE~ 119 (361)
.-+.|-.|+..=++.|+.+.+-.++=..-+..++..|..+.....+..-. | ++ .+-+ ..++|..|..
T Consensus 9 ~~~~l~~~~~Kl~K~~~~~~~a~~~~~~a~~~Fa~~L~~f~~~~dD~~~~a~gg~~l~kF~~~l~ei~~~~~~L~~---- 84 (202)
T cd07606 9 SADELRDRSLKLYKGCRKYRDALGEAYDGDSAFAESLEEFGGGHDDPISVAVGGPVMTKFTSALREIGSYKEVLRS---- 84 (202)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHhccchHHHHHHHHHHHHHHHHHHHHH----
Confidence 34677788888899999999999999999999999999996321111111 1 22 1111 2245555542
Q ss_pred hHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5492 120 KEMEDAF-KKAQKPWCKLLTKVNKTKNDYHVACKAERSASNQERNASADSSLSMDQLKKMQDRVQKAKEEVQKAKEKYEL 198 (361)
Q Consensus 120 K~~e~~~-~KaqK~~~~~~~kl~KaKK~Y~~~Ckee~~a~~~e~~a~~d~~~s~ke~eKl~~K~~K~~~~~~kak~eY~~ 198 (361)
.++..+ ..+++=...-++.+..+||.|+....+-+++..+...... ..-+.+++ .+..++
T Consensus 85 -q~~~~l~~pL~~F~k~Dl~~vKe~kK~FdK~s~~yd~al~K~~~l~k--~~k~~~~~-------ea~~~l--------- 145 (202)
T cd07606 85 -QVEHMLNDRLAQFADTDLQEVKDARRRFDKASLDYEQARSKFLSLTK--DAKPEILA-------AAEEDL--------- 145 (202)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--cCchHHHH-------HHHHHH---------
Confidence 111111 1112222234556777888888887776666444322110 11111222 223333
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh
Q psy5492 199 ALQELNSYNPKYMEDMSVVFDKCQEMET-TRLQFFKDSLFSIHKCL 243 (361)
Q Consensus 199 ~l~~ln~~r~~yeeeM~~~~d~~Q~lEe-~RI~flK~~L~~y~~~l 243 (361)
...|..|...+-..+-+++.++. +|..||..++.-++.++
T Consensus 146 -----~~~R~~F~~~~ldyv~~ln~~q~kKk~e~le~ll~~m~A~~ 186 (202)
T cd07606 146 -----GTTRSAFETARFDLMNRLHAADARKRVEFLERLSGSMDAHL 186 (202)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555555555543 56667766666555554
No 48
>cd07590 BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 3 (Bin3) is widely expressed in many tissues except in the brain. It plays roles in regulating filamentous actin localization and in cell division. In humans, the Bin3 gene is located in chromosome 8p21.3, a region that is implicated in cancer suppression. Homozygous inactivation of the Bin3 gene in mice led to the development of cataracts and an increased likelihood of lymphomas during aging, suggesting a role for Bin3 in lens development and cancer suppression. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=87.55 E-value=26 Score=33.18 Aligned_cols=48 Identities=15% Similarity=0.391 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5492 179 QDRVQKAKEEVQKAKEKYELALQELNSYNPKYMEDMSVVFDKCQEMETTRLQFFKDSLFSIH 240 (361)
Q Consensus 179 ~~K~~K~~~~~~kak~eY~~~l~~ln~~r~~yeeeM~~~~d~~Q~lEe~RI~flK~~L~~y~ 240 (361)
..|+.+++.+.+.|++.|...-. .-.+++|..++ .|+.|+...|..+.
T Consensus 144 ~~KL~kae~el~~Ak~~ye~~N~-------~L~~ELP~l~~-------~r~~f~~p~Fqsl~ 191 (225)
T cd07590 144 LAKLEQAEKALAAARADFEKQNI-------KLLEELPKFYN-------GRTDYFQPCFEALI 191 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhHHHHH-------HccHHHHHHHHHHH
Confidence 35667788888999998854444 44555555555 56666655555443
No 49
>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to oligophrenin1 (OPHN1). Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. Some members contain a C-terminal SH3 domain. Vertebrates harbor at least three Rho GAPs in this subfamily including OPHN1, GTPase Regulator Associated with Focal adhesion kinase (GRAF), GRAF2, and an uncharacterized protein called GAP10-like. OPHN1, GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. In addition, OPHN1 is active towards Rac. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of OPHN1
Probab=87.45 E-value=25 Score=32.92 Aligned_cols=107 Identities=14% Similarity=0.207 Sum_probs=68.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH--H----h-hhh----hhHh-HHHHHHHhhhh
Q psy5492 49 NYKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNKKWNELI--E----K-VMR----TCWQ-KDTYHKTVLHI 116 (361)
Q Consensus 49 Gy~~l~krik~G~~~ckeL~~flKERA~IEeeYAK~L~kLaKK~~~~~--e----~-g~l----~aWq-~~~~H~qL~~~ 116 (361)
..+.|-++++.=++.|+.+++-.++=......++.+|..+.-...|.. + . +++ .+-+ ..++|.-|+.
T Consensus 10 ele~l~~~ikkLiK~ck~~i~a~k~~~~a~~~F~~~L~~f~~~~~g~~~tDDe~~i~~~L~kF~~~l~ei~~~r~~L~~- 88 (207)
T cd07602 10 ELERTNKAIKELIKECKNLISATKNLSKAQRSFAQTLQNFKFECIGETQTDDEIEIAESLKEFGRLIETVEDERDRMLE- 88 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 567889999999999999999999999999999999999997664422 1 1 222 1111 2244544432
Q ss_pred hHHhHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy5492 117 KERKEMEDAF-KKAQKPWCKLLTKVNKTKNDYHVACKAERSASNQ 160 (361)
Q Consensus 117 KE~K~~e~~~-~KaqK~~~~~~~kl~KaKK~Y~~~Ckee~~a~~~ 160 (361)
.++..+ ..+++=...-+..+..+||.|+....+-+++..+
T Consensus 89 ----q~~~~l~~pL~~F~k~dl~~~ke~kk~FdK~se~~~~al~k 129 (207)
T cd07602 89 ----NAEEQLIEPLEKFRKEQIGGAKEEKKKFDKETEKFCSSLEK 129 (207)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 1111222234567788899999888776666443
No 50
>cd07681 F-BAR_PACSIN3 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 3 (PACSIN3). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 3 or Syndapin III is expressed ubiquitously and regulates glucose uptake in adipocytes through its role in GLUT1 trafficking. It also modulates the subcellular localization and stimulus-specific function of the cation channel TRPV4. PACSIN 3 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to
Probab=85.95 E-value=5.1 Score=38.71 Aligned_cols=27 Identities=48% Similarity=0.902 Sum_probs=21.7
Q ss_pred hhHH--HHhhhhhHHHHhhcCchhHHHhHHH
Q psy5492 274 TVLH--IKERKEMEDAFKKAQKPWCIMQHLK 302 (361)
Q Consensus 274 ~~~~--~k~~~~~~~~~~~~~~~~~~~~~~~ 302 (361)
..|+ +|+||+++|.|.|+|+|| ++.++
T Consensus 105 k~~~~g~ke~K~~e~~f~kaqK~w--~k~~k 133 (258)
T cd07681 105 KQMIGGFRESKEAEEGFRKAQKPW--VKKLK 133 (258)
T ss_pred HHHhhhhHHHHHHHHHHHHHHhHH--HHHHH
Confidence 4455 799999999999999999 44444
No 51
>cd07633 BAR_OPHN1 The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin-1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Oligophrenin-1 (OPHN1) is a GTPase activating protein (GAP) with activity towards RhoA, Rac, and Cdc42, that is expressed in developing spinal cord and in adult brain areas with high plasticity. It plays a role in regulating the actin cystoskeleton as well as morphology changes in axons and dendrites, and may also function in modulating neuronal connectivity. Mutations in the OPHN1 gene causes X-linked mental retardation associated with cerebellar hypoplasia, lateral ventricle enlargement and epilepsy. OPHN1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=85.20 E-value=33 Score=32.15 Aligned_cols=107 Identities=13% Similarity=0.107 Sum_probs=66.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh-------hhhhhH-----hHHHHHHHhhhh
Q psy5492 49 NYKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNKKWNELIEK-------VMRTCW-----QKDTYHKTVLHI 116 (361)
Q Consensus 49 Gy~~l~krik~G~~~ckeL~~flKERA~IEeeYAK~L~kLaKK~~~~~e~-------g~l~aW-----q~~~~H~qL~~~ 116 (361)
-.+.|-++++.=++.|+.|++-.|.=+..=+.+|.+|..+.-...|.... +++.-+ ...++|..|++
T Consensus 10 ele~~~~~IkkliK~~~~li~a~K~~s~A~r~Fa~~L~df~f~~igd~~tdde~~I~~sL~~F~~~L~~ie~~r~~l~d- 88 (207)
T cd07633 10 ELERTNKFIKDVIKDGNALISAIKEYSSAVQKFSQTLQSFQFDFIGDTLTDDEINIAESFKEFAELLQEVEEERMMMVQ- 88 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 35678889999999999999999999999999999999988876553321 122111 12244544433
Q ss_pred hHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy5492 117 KERKEMEDAFKKAQKPWCKLLTKVNKTKNDYHVACKAERSASN 159 (361)
Q Consensus 117 KE~K~~e~~~~KaqK~~~~~~~kl~KaKK~Y~~~Ckee~~a~~ 159 (361)
.-...+.. .+++=+....+.+...||.|+....+..++..
T Consensus 89 ~aq~s~~~---~L~~F~Kedi~~~Ke~KK~FdK~se~~~~aL~ 128 (207)
T cd07633 89 NASDLLIK---PLENFRKEQIGFTKERKKKFEKDSEKFYSLLD 128 (207)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Confidence 00001111 11222334456677788899887766666643
No 52
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family. In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.
Probab=84.06 E-value=36 Score=31.64 Aligned_cols=50 Identities=18% Similarity=0.136 Sum_probs=40.3
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccc
Q psy5492 197 ELALQELNSYNPKYMEDMSVVFDKCQEMETTRLQFFKDSLFSIHKCL-NIS 246 (361)
Q Consensus 197 ~~~l~~ln~~r~~yeeeM~~~~d~~Q~lEe~RI~flK~~L~~y~~~l-d~~ 246 (361)
...++.++.-...+++-....+...-..|+.|..||-+.+..+..+. ++.
T Consensus 144 ~~~~~~v~~~~~ele~~~~~~~r~al~EERrRyc~lv~~~~~~~~~~~~~~ 194 (219)
T PF08397_consen 144 KEALQDVTERQSELEEFEKQSLREALLEERRRYCFLVEKHCSVVKSELAFH 194 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33467777777788888888899999999999999998888887777 444
No 53
>cd00011 BAR_Arfaptin_like The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin-like proteins, a dimerization module that binds and bends membranes. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization, lipid binding and curvature sensing module present in Arfaptins, PICK1, ICA69, and similar proteins. Arfaptins are ubiquitously expressed proteins implicated in mediating cross-talk between Rac, a member of the Rho family GTPases, and Arf (ADP-ribosylation factor) small GTPases. Arfaptins bind to GTP-bound Arf1, Arf5, and Arf6, with strongest binding to GTP-Arf1. Arfaptins also binds to Rac-GTP and Rac-GDP with similar affinities. The Arfs are thought to bind to the same surface as Rac, and their binding is mutually exclusive. Protein Interacting with C Kinase 1 (PICK1) plays a key role in the trafficking of AMPA receptors, which are critical for regulating synaptic strength and may be important in cellular processes involved in learning and memory. Is
Probab=83.54 E-value=39 Score=31.60 Aligned_cols=155 Identities=12% Similarity=0.096 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHh-HHHHHHHhhhh-----hHHhHHHHHH----HHHh
Q psy5492 61 YKLCNDLIALIQERADIEKAYAKSLKGWNKKWNELIEKVMRTCWQ-KDTYHKTVLHI-----KERKEMEDAF----KKAQ 130 (361)
Q Consensus 61 ~~~ckeL~~flKERA~IEeeYAK~L~kLaKK~~~~~e~g~l~aWq-~~~~H~qL~~~-----KE~K~~e~~~----~Kaq 130 (361)
.+..+.+...+.+=+.-|.++|.-|..++.+-.... |.. .. -+..|+.+... ...+.+...+ .++-
T Consensus 22 l~~~~~~~~~~~~l~q~q~~lG~~f~~l~~~~~~~a--~~~--f~~~~~a~r~~~k~g~~ll~~l~~~~~~l~T~~~kai 97 (203)
T cd00011 22 LQLGRALTAHLYSLSQTQHALGDAFADLSQKDPELA--GEE--FGYNAEAQKLLCKNGETLLGAVNFFVSSINTLVTKAI 97 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHH--HHH--HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhc
Confidence 444455555555556666666666666665422111 110 00 11344444321 1112222222 2333
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q psy5492 131 KPWCKLLTKVNKTKNDYHVACKAERSASNQERNASADSSLSMDQLKKMQDRVQKAKEEVQKAKEKYELALQELNSYNPKY 210 (361)
Q Consensus 131 K~~~~~~~kl~KaKK~Y~~~Ckee~~a~~~e~~a~~d~~~s~ke~eKl~~K~~K~~~~~~kak~eY~~~l~~ln~~r~~y 210 (361)
..=.-..+..+.||=.|...|...+...... ++. +.... .+|+.........+..|
T Consensus 98 ~DT~lTI~~ye~aR~EY~a~~l~~ke~~~e~-----~~~-~~~~~------------------~k~r~~q~~~~~~k~kf 153 (203)
T cd00011 98 EDTLLTVKQYEAARLEYDAYRLDLKELSLEP-----RDD-TAGTR------------------GRLRSAQATFQEHRDKF 153 (203)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHhcccC-----Ccc-cccch------------------HHHHHHHHHHHHHHHHH
Confidence 3333456788999999999999866442211 111 11111 12333333444444445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5492 211 MEDMSVVFDKCQEMETTRLQFFKDSLFSIHKCL 243 (361)
Q Consensus 211 eeeM~~~~d~~Q~lEe~RI~flK~~L~~y~~~l 243 (361)
..-=..++.+++-+|+.|+..|...|..|++.+
T Consensus 154 ~kLr~Dv~~Kl~lL~~~r~~~l~~qL~~~~~al 186 (203)
T cd00011 154 EKLRGDVAIKLKFLEENKIKVMHKQLLLFHNTV 186 (203)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 555567899999999999999999999999988
No 54
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=83.13 E-value=39 Score=31.34 Aligned_cols=40 Identities=13% Similarity=0.213 Sum_probs=30.4
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5492 204 NSYNPKYMEDMSVVFDKCQEMETTRLQFFKDSLFSIHKCL 243 (361)
Q Consensus 204 n~~r~~yeeeM~~~~d~~Q~lEe~RI~flK~~L~~y~~~l 243 (361)
..++..|+.=-..+-..+..++..|+.-|+.+|..|....
T Consensus 160 ~~a~~~~e~is~~~k~El~rF~~~r~~dfk~~l~~~~e~~ 199 (216)
T cd07627 160 SELKKEFEEVSELIKSELERFERERVEDFRNSVEIYLESA 199 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555556667889999999999999999998666
No 55
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=82.29 E-value=42 Score=31.09 Aligned_cols=167 Identities=13% Similarity=0.175 Sum_probs=94.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhh-hh----hhHh-HHHHHHHhhhhhHHhH
Q psy5492 48 GNYKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNKKWNELIEKV-MR----TCWQ-KDTYHKTVLHIKERKE 121 (361)
Q Consensus 48 ~Gy~~l~krik~G~~~ckeL~~flKERA~IEeeYAK~L~kLaKK~~~~~e~g-~l----~aWq-~~~~H~qL~~~KE~K~ 121 (361)
...+.|-.+++.=++.|+.+.+..+.=..-+..|+..|..+.....+....+ ++ .+-+ ..++|..|+. .
T Consensus 9 ~~~~~l~~~l~kl~K~~~~~~~ag~~~~~a~~~F~~~L~~~~~~~~~d~~i~~~l~kF~~~l~el~~~~~~L~~-----q 83 (200)
T cd07603 9 ADVSELETRLEKLLKLCNGMVDSGKTYVNANSLFVNSLNDLSDYFRDDSLVQNCLNKFIQALQEMNNFHTILLD-----Q 83 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHH-----H
Confidence 3568889999999999999999999999999999999999998654332222 22 1111 1134444432 1
Q ss_pred HHHHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5492 122 MEDAF-KKAQKPWCKLLTKVNKTKNDYHVACKAERSASNQERNASADSSLSMDQLKKMQDRVQKAKEEVQKAKEKYELAL 200 (361)
Q Consensus 122 ~e~~~-~KaqK~~~~~~~kl~KaKK~Y~~~Ckee~~a~~~e~~a~~d~~~s~ke~eKl~~K~~K~~~~~~kak~eY~~~l 200 (361)
++..+ ..++.=+..-+..+..+|+.|+..-.+-+++..+.- . ++ + .| ...++.+...
T Consensus 84 ~~~~i~~pL~~F~k~dL~~vKE~kk~Fdk~s~~yd~al~k~~--~----~~-K--~K-~~~~~Ea~~~------------ 141 (200)
T cd07603 84 AQRTVSTQLQNFVKEDIKKVKESKKHFEKISDDLDNALVKNA--Q----AP-R--SK-PQEAEEATNI------------ 141 (200)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh--c----cC-C--CC-HHHHHHHHHH------------
Confidence 11111 011111223345566778888877777666644432 1 11 0 01 1122222223
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh
Q psy5492 201 QELNSYNPKYMEDMSVVFDKCQEMET-TRLQFFKDSLFSIHKCL 243 (361)
Q Consensus 201 ~~ln~~r~~yeeeM~~~~d~~Q~lEe-~RI~flK~~L~~y~~~l 243 (361)
+...|..|...+-..+-.++.++. +|..||..+|.-++.++
T Consensus 142 --L~~~Rk~f~~~sldyv~~in~iq~kKk~e~le~ll~~~~A~~ 183 (200)
T cd07603 142 --LTATRSCFRHTALDYVLQINVLQAKKRHEILSTLLSYMHAQF 183 (200)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555566666666554 56667776665555555
No 56
>cd07680 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 1 or Syndapin I is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropatholog
Probab=81.87 E-value=6.3 Score=38.07 Aligned_cols=20 Identities=65% Similarity=1.064 Sum_probs=18.4
Q ss_pred HHhhhhhHHHHhhcCchhHH
Q psy5492 278 IKERKEMEDAFKKAQKPWCI 297 (361)
Q Consensus 278 ~k~~~~~~~~~~~~~~~~~~ 297 (361)
+|+|++.++.|.|+|+||--
T Consensus 111 ~ke~K~~e~~~~KaQK~~~k 130 (258)
T cd07680 111 FKETKEAEDGFRKAQKPWAK 130 (258)
T ss_pred hHHHHHHHHHHHHHHhHHHH
Confidence 68999999999999999964
No 57
>smart00721 BAR BAR domain.
Probab=76.91 E-value=60 Score=29.68 Aligned_cols=60 Identities=22% Similarity=0.297 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5492 135 KLLTKVNKTKNDYHVACKAERSASNQERNASADSSLSMDQLKKMQDRVQKAKEEVQKAKEKYELAL 200 (361)
Q Consensus 135 ~~~~kl~KaKK~Y~~~Ckee~~a~~~e~~a~~d~~~s~ke~eKl~~K~~K~~~~~~kak~eY~~~l 200 (361)
..+..+.++++.++.+..+.+.++.+..++......+++ + ++.+++.+++.|++.|...-
T Consensus 131 ~~~~~~~~~~kk~~~~~lDyD~~~~kl~~~~~~~~~~~~-----~-kl~~~e~el~~ak~~fe~~~ 190 (239)
T smart00721 131 GEFKEIKKARKKLERKLLDYDSARHKLKKAKKSKEKKKD-----E-KLAKAEEELRKAKQEFEESN 190 (239)
T ss_pred HHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCChh-----h-hhhhHHHHHHHHHHHHHHHH
Confidence 445555666666666666555444333222111111111 2 45557777777777775543
No 58
>cd07660 BAR_Arfaptin The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Arfaptins are ubiquitously expressed proteins implicated in mediating cross-talk between Rac, a member of the Rho family GTPases, and Arf (ADP-ribosylation factor) small GTPases. Arfaptins bind to GTP-bound Arf1, Arf5, and Arf6, with strongest binding to GTP-Arf1. Arfaptins also bind to Rac-GTP and Rac-GDP with similar affinities. The Arfs are thought to bind to the same surface as Rac, and their binding is mutually exclusive. Mammals contain at least two isoforms of Arfaptin. Arfaptin 1 has been shown to inhibit the activation of Arf-dependent phospholipase D (PLD) and the secretion of matrix metalloproteinase-9 (MMP-9), an enzyme implicated in cancer invasiveness and metastasis. Arfaptin 2 regulates the aggregation of the protein huntingtin, which is im
Probab=76.67 E-value=66 Score=30.06 Aligned_cols=83 Identities=13% Similarity=0.209 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q psy5492 135 KLLTKVNKTKNDYHVACKAERSASNQERNASADSSLSMDQLKKMQDRVQKAKEEVQKAKEKYELALQELNSYNPKYMEDM 214 (361)
Q Consensus 135 ~~~~kl~KaKK~Y~~~Ckee~~a~~~e~~a~~d~~~s~ke~eKl~~K~~K~~~~~~kak~eY~~~l~~ln~~r~~yeeeM 214 (361)
...+..+.||=.|+..|.+.+... .+ .-+.+.+.|++ .++.....+++. |+.-=
T Consensus 101 lTI~~ye~aR~EYdayr~D~ee~~-------~~-~~~~~~l~r~~----~~q~~~~~~k~k--------------f~KLR 154 (201)
T cd07660 101 MTVKQYESARIEYDAYRNDLEALN-------LG-PRDAATSARLE----EAQRRFQAHKDK--------------YEKLR 154 (201)
T ss_pred HHHHHHHhhhHhHHHHhccHHHcc-------cC-CCccchHhhHH----HHHHHHHHHHHH--------------HHHHH
Confidence 456777889999999987643221 11 11223333332 233333444444 44444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5492 215 SVVFDKCQEMETTRLQFFKDSLFSIHKCL 243 (361)
Q Consensus 215 ~~~~d~~Q~lEe~RI~flK~~L~~y~~~l 243 (361)
..||.++.-+|+.|+..|..-|..+++.+
T Consensus 155 ~DV~~Kl~lLeenrv~vm~~QL~~f~~a~ 183 (201)
T cd07660 155 NDVSVKLKFLEENKVKVMHKQLLLFHNAI 183 (201)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999888
No 59
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=74.83 E-value=69 Score=29.40 Aligned_cols=44 Identities=18% Similarity=0.203 Sum_probs=34.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5492 48 GNYKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNKK 91 (361)
Q Consensus 48 ~Gy~~l~krik~G~~~ckeL~~flKERA~IEeeYAK~L~kLaKK 91 (361)
+-.+.+-.+++.-.+.+..|..=-++=+..-.+||..+..|+.-
T Consensus 31 ~~~~~le~~Lk~l~~~~~~l~~~~~~l~~~~~e~~~~~~~la~~ 74 (236)
T PF09325_consen 31 DYVDKLEEQLKKLYKSLERLVKRRQELASALAEFGSSFSQLAKS 74 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 46778888888878878777777777777778888888888754
No 60
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=70.63 E-value=93 Score=29.06 Aligned_cols=42 Identities=14% Similarity=0.073 Sum_probs=32.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5492 49 NYKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNK 90 (361)
Q Consensus 49 Gy~~l~krik~G~~~ckeL~~flKERA~IEeeYAK~L~kLaK 90 (361)
-.+.|-.+++.-...++-|..--++=|..=.++|+.+..|+.
T Consensus 20 ~i~~Le~~Lk~l~~~~e~lv~~r~ela~~~~~f~~s~~~L~~ 61 (224)
T cd07623 20 QIENLDQQLRKLHASVESLVNHRKELALNTGSFAKSAAMLSN 61 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456677777777777777777777777788888888888886
No 61
>cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP2 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2), also called centaurin beta-2, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=70.05 E-value=95 Score=28.92 Aligned_cols=106 Identities=12% Similarity=0.190 Sum_probs=65.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhh--hh----hhHh-HHHHHHHhhhhhHHhH
Q psy5492 49 NYKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNKKWNELIEKV--MR----TCWQ-KDTYHKTVLHIKERKE 121 (361)
Q Consensus 49 Gy~~l~krik~G~~~ckeL~~flKERA~IEeeYAK~L~kLaKK~~~~~e~g--~l----~aWq-~~~~H~qL~~~KE~K~ 121 (361)
..+.|-.|++.=.+.|+.+.+--++=+.....++.+|..+.+ +++..+.+ ++ .+-+ ..++|.-|+. .
T Consensus 10 d~~~Le~~l~Kl~K~~~~~~dag~~~~~a~~~F~~~l~d~~~-~~~~De~i~~~l~kF~~~l~ei~~~~~~L~~-----q 83 (200)
T cd07638 10 DVAELELKLDKLVKLCIGMIDAGKAFCQANKQFMNGIRDLAQ-YSSKDAVIETSLTKFSDTLQEMINYHTILFD-----Q 83 (200)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-hCCcchhhHHHHHHHHHHHHHHHHHHHHHHH-----H
Confidence 567788889999999999999998888999999999999866 32222221 22 1111 2245554432 1
Q ss_pred HHHHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy5492 122 MEDAF-KKAQKPWCKLLTKVNKTKNDYHVACKAERSASNQ 160 (361)
Q Consensus 122 ~e~~~-~KaqK~~~~~~~kl~KaKK~Y~~~Ckee~~a~~~ 160 (361)
++..+ ..+++=...-+..+..+||.|+....+..++..+
T Consensus 84 ~~~~l~~~L~~F~k~dl~~vke~kk~FdK~s~~~~~aL~K 123 (200)
T cd07638 84 AQRSIKAQLQTFVKEDLRKFKDAKKQFDKVSEEKENALVK 123 (200)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHH
Confidence 11111 1222222334567788899999988776666433
No 62
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=67.00 E-value=1.2e+02 Score=28.87 Aligned_cols=52 Identities=13% Similarity=0.170 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5492 192 AKEKYELALQELNSYNPKYMEDMSVVFDKCQEMETTRLQFFKDSLFSIHKCL 243 (361)
Q Consensus 192 ak~eY~~~l~~ln~~r~~yeeeM~~~~d~~Q~lEe~RI~flK~~L~~y~~~l 243 (361)
++.++...-.....++..|+.=-..+=..+..++.+|+.-|+++|..|....
T Consensus 164 ~~~ev~~~e~~~~~a~~~fe~Is~~~k~El~rFe~er~~dfk~~l~~fles~ 215 (234)
T cd07664 164 AKDEIKEWEAKVQQGERDFEQISKTIRKEVGRFEKERVKDFKTVIIKYLESL 215 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444445555566655556667888899999999999999997655
No 63
>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes. Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me
Probab=63.76 E-value=1.3e+02 Score=28.36 Aligned_cols=47 Identities=26% Similarity=0.198 Sum_probs=37.2
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5492 197 ELALQELNSYNPKYMEDMSVVFDKCQEMETTRLQFFKDSLFSIHKCL 243 (361)
Q Consensus 197 ~~~l~~ln~~r~~yeeeM~~~~d~~Q~lEe~RI~flK~~L~~y~~~l 243 (361)
..+++.+|.-...+++-....+...=-.|+.|..||-+.+..+....
T Consensus 155 ~~~~e~v~~k~~ele~~~~~~lr~al~EERrRyc~lv~~~c~v~~~e 201 (223)
T cd07605 155 DQALEELNDKQKELEAFVSQGLRDALLEERRRYCFLVDKHCSVAKHE 201 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777777777888888888899999999988887776655
No 64
>cd07618 BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 1 (Rich1) is also called Neuron-associated developmentally-regulated protein (Nadrin) or Rho GTPase activating protein 17 (ARHGAP17). It is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. It may be a component of a sorting mechanism in the recycling of tight junction transmembrane proteins. Rich1 contains an N-terminal BAR domain followed by a Rho GAP domain and a C-terminal proline-rich domain. It interacts with the BAR domain proteins endophilin and amphiphysin through its proline-rich region. The BAR domain of Rich1 forms oligomers and can bind membranes and induce membrane tubulation.
Probab=63.10 E-value=1.5e+02 Score=28.58 Aligned_cols=21 Identities=5% Similarity=0.213 Sum_probs=16.1
Q ss_pred chHHHHHHHHHHHHHHHHHHH
Q psy5492 49 NYKRTTKRIEDGYKLCNDLIA 69 (361)
Q Consensus 49 Gy~~l~krik~G~~~ckeL~~ 69 (361)
.|..+.+|++.-..++.+|..
T Consensus 16 ~~~~le~r~D~~k~~~~~i~k 36 (246)
T cd07618 16 DLLQIERRLDTVRSVSHNVHK 36 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 688888888888877766653
No 65
>cd07601 BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains, and are localized to cytoplasmic membranes. Vertebrates contain two APPL proteins, APPL1 and APPL2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=59.59 E-value=1.6e+02 Score=27.78 Aligned_cols=168 Identities=10% Similarity=0.078 Sum_probs=95.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhHHh---hhh----hhH-hHHHHHHHhhhhhH
Q psy5492 49 NYKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNKK--WNELIEK---VMR----TCW-QKDTYHKTVLHIKE 118 (361)
Q Consensus 49 Gy~~l~krik~G~~~ckeL~~flKERA~IEeeYAK~L~kLaKK--~~~~~e~---g~l----~aW-q~~~~H~qL~~~KE 118 (361)
.-..|-.+++.=++.|+.+.+..++=......++++|..+.+. ..+..+. .++ .+- ...++|..|+.
T Consensus 10 d~~~L~~~~~kL~K~c~~~~~a~~~~~~A~~~F~~~L~ef~~~~f~~~~dDe~~~~~l~kFs~~l~El~~~~~~L~~--- 86 (215)
T cd07601 10 DALQLSSYMNQLLQACKRVYDAQNELKSATQALSKKLGEYEKQKFELGRDDEILVSTLKQFSKVVDELSTMHSTLSS--- 86 (215)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 4567889999999999999999999999999999999999876 2221111 122 111 12245554432
Q ss_pred HhHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5492 119 RKEMEDAF-KKAQKPWCKLLTKVNKTKNDYHVACKAERSASNQERNASADSSLSMDQLKKMQDRVQKAKEEVQKAKEKYE 197 (361)
Q Consensus 119 ~K~~e~~~-~KaqK~~~~~~~kl~KaKK~Y~~~Ckee~~a~~~e~~a~~d~~~s~ke~eKl~~K~~K~~~~~~kak~eY~ 197 (361)
.++..+ ..+++=...-++.+..+||.|+....+-++|..+...... . +..++.. .
T Consensus 87 --q~~~~l~~pL~~F~k~Dl~~vKe~kK~FdK~s~~~d~al~K~~~l~k--~---k~~~~~~---~-------------- 142 (215)
T cd07601 87 --QLADTVLHPISQFMESDLAEIMTLKELFKAASNDHDGVLSKYSRLSK--K---RENTKVK---I-------------- 142 (215)
T ss_pred --HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHhhCCc--C---CCchHHH---H--------------
Confidence 111111 1122222234556778889998887777766444322111 0 1111110 0
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHh
Q psy5492 198 LALQELNSYNPKYMEDMSVVFDKCQEME-TTRLQFFKDSLFSIHKCL 243 (361)
Q Consensus 198 ~~l~~ln~~r~~yeeeM~~~~d~~Q~lE-e~RI~flK~~L~~y~~~l 243 (361)
.+-+.+...|..|.+.+-..+-+++.++ .+|+.||..++.-++.++
T Consensus 143 Ea~~~l~~~R~~F~~~~ldYv~~ln~iq~kKk~e~Le~ll~~m~A~~ 189 (215)
T cd07601 143 EVNDEVYACRKKQHQTAMNYYCALNLLQYKKTTALLEPMIGYLQAQI 189 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222334445555555556666666664 466777776666555555
No 66
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=56.97 E-value=1.8e+02 Score=27.69 Aligned_cols=52 Identities=15% Similarity=0.206 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5492 192 AKEKYELALQELNSYNPKYMEDMSVVFDKCQEMETTRLQFFKDSLFSIHKCL 243 (361)
Q Consensus 192 ak~eY~~~l~~ln~~r~~yeeeM~~~~d~~Q~lEe~RI~flK~~L~~y~~~l 243 (361)
++.++...-..+...+..|++=-..+-..+..+|++|+.-||+++..|....
T Consensus 164 a~~Ev~e~e~k~~~a~~~fe~is~~ik~El~rFe~er~~Dfk~~v~~fles~ 215 (234)
T cd07665 164 AKDEIAEWESRVTQYERDFERISATVRKEVIRFEKEKSKDFKNHIIKYLETL 215 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444544455556666677776677778899999999999999999998666
No 67
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=55.96 E-value=1.5e+02 Score=26.40 Aligned_cols=59 Identities=12% Similarity=0.309 Sum_probs=37.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5492 170 LSMDQLKKMQDRVQKAKEEVQKAKEKYELALQELNSYNPKYMEDMSVVFDKCQEMETTRLQFFKDSLFSIHKC 242 (361)
Q Consensus 170 ~s~ke~eKl~~K~~K~~~~~~kak~eY~~~l~~ln~~r~~yeeeM~~~~d~~Q~lEe~RI~flK~~L~~y~~~ 242 (361)
..+..+++++.++..++..+..++..|...-. .+...+..++..|...|+.+|..|...
T Consensus 142 ~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i~~--------------~~~~El~~f~~~~~~dlk~~l~~~~~~ 200 (218)
T cd07596 142 IKPAKVEELEEELEEAESALEEARKRYEEISE--------------RLKEELKRFHEERARDLKAALKEFARL 200 (218)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777888877777777777777654433 334455555566666666666666543
No 68
>KOG3771|consensus
Probab=55.70 E-value=45 Score=34.85 Aligned_cols=61 Identities=25% Similarity=0.290 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5492 179 QDRVQKAKEEVQKAKEKYELALQELNSYNP-KYMEDMSVVFDKCQEMETTRLQFFKDSLFSI 239 (361)
Q Consensus 179 ~~K~~K~~~~~~kak~eY~~~l~~ln~~r~-~yeeeM~~~~d~~Q~lEe~RI~flK~~L~~y 239 (361)
..++.|++.+.++|++.|...-++|-..-+ -|-....-.-..||.+=--++.|.+++-.-|
T Consensus 156 ~~k~~KAeeEl~~Aq~~fE~lN~~L~eELP~L~~sRv~f~vp~Fqsl~~~q~vf~~Emskl~ 217 (460)
T KOG3771|consen 156 EAKLAKAEEELEKAQQVFEELNNELLEELPALYSSRVGFFVPTFQSLFNLQLVFHKEMSKLY 217 (460)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHH
Confidence 345556888888899998766666644333 4555555555556666666666666553333
No 69
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=54.26 E-value=3e+02 Score=29.30 Aligned_cols=36 Identities=17% Similarity=0.272 Sum_probs=24.7
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5492 120 KEMEDAFKKAQKPWCKLLTKVNKTKNDYHVACKAER 155 (361)
Q Consensus 120 K~~e~~~~KaqK~~~~~~~kl~KaKK~Y~~~Ckee~ 155 (361)
.+.+..+....+.-.........++..|...|++..
T Consensus 134 ~k~~q~~~d~~kk~~e~~~~~~~~~~~~~~~c~~lG 169 (507)
T PF05600_consen 134 AKCQQQLEDLDKKEEELQRSAAEARERYKKACKQLG 169 (507)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 444455555556666667777888899999998743
No 70
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=54.22 E-value=1.6e+02 Score=26.13 Aligned_cols=24 Identities=4% Similarity=0.135 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q psy5492 50 YKRTTKRIEDGYKLCNDLIALIQE 73 (361)
Q Consensus 50 y~~l~krik~G~~~ckeL~~flKE 73 (361)
|+.+.++++.-...+..|..-++.
T Consensus 28 f~~~~~~~~~~~~~~~~l~~~~~~ 51 (229)
T PF03114_consen 28 FEELEEKFKQLEESIKKLQKSLKK 51 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556655555555555544433
No 71
>PF10550 Toxin_36: Conantokin-G mollusc-toxin; InterPro: IPR005918 The conantokins are a family of neuroactive peptides found in the venoms of fish-hunting cone snails. They possess a relatively high number of residues (4-5) of the non-standard amino acid gamma-carboxyglutamic acid (Gla), which is generated by the post-translational modification of glutamate (Glu) residues. Conantokins are the only naturally produced peptides known to be N-methyl-D-aspartate (NMDA) receptor antagonists and show therapeutic promise in treating conditions associated with NMDA receptor dysfunction. In animal models they have exhibited anticonvulsant and anti-Parkinsonian properties and have provided neuroprotection within therapeutically acceptable times following transient focal brain ischemia [, , , ]. Upon binding of Ca2+ to Gla, conantokin undergoes a conformational transition from a distorted curvilinear 3(10) helix to a linear alpha-helix. The binding of Ca2+ to conantokin leads to the exposure of a hydrophobic region on the opposite face of the helix []. Conantokins share relatively few sequence elements, which include include sequence identity at the first four residues, homologous positioning of the two most C-terminal Gla residues, and an Arg preceding the most C-terminal Gla []. The conantokin family is currently known to include: Conotoxin G from Conus geographus (Geography cone) (Nubecula geographus). Conantokin-L from Conus lynceus (Lynceus cone). Conantokin-R from Conus radiatus (Rayed cone). Conantokin-T from Conus tulipa (Fish-hunting cone snail) (Tulip cone). ; PDB: 1ONT_A.
Probab=53.74 E-value=15 Score=19.89 Aligned_cols=13 Identities=23% Similarity=0.187 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHH
Q psy5492 78 EKAYAKSLKGWNK 90 (361)
Q Consensus 78 EeeYAK~L~kLaK 90 (361)
|++|+|.+..|++
T Consensus 2 eee~~km~~~lar 14 (15)
T PF10550_consen 2 EEEVAKMAAELAR 14 (15)
T ss_dssp HHHHHHHHHHH-H
T ss_pred hHHHHHHHHHHhc
Confidence 7899999998876
No 72
>cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. This subfamily is composed of different isoforms of amphiphysin and Bridging integrator 2 (Bin2). Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of th
Probab=50.40 E-value=2.2e+02 Score=26.67 Aligned_cols=49 Identities=37% Similarity=0.684 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5492 179 QDRVQKAKEEVQKAKEKYELALQELNSYNPKYMEDMSVVFDKCQEMETTRLQFFKDSLFSIHK 241 (361)
Q Consensus 179 ~~K~~K~~~~~~kak~eY~~~l~~ln~~r~~yeeeM~~~~d~~Q~lEe~RI~flK~~L~~y~~ 241 (361)
..|+.+++.+.+.|++.|. .++..-.+++|..++ .|+.|+...|..+.+
T Consensus 138 e~KL~kae~el~~Ak~~Ye-------~lN~~L~~ELP~L~~-------~ri~f~~p~F~sl~~ 186 (211)
T cd07588 138 DQKLTKAEEELQQAKKVYE-------ELNTELHEELPALYD-------SRIAFYVDTLQSIFA 186 (211)
T ss_pred HhhHHHHHHHHHHHHHHHH-------HHHHHHHHHhHHHHH-------HhhHHHHHHHHHHHH
Confidence 4455667888888888884 445555666666666 566666665555543
No 73
>cd07659 BAR_PICK1 The Bin/Amphiphysin/Rvs (BAR) domain of Protein Interacting with C Kinase 1. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Protein Interacting with C Kinase 1 (PICK1), also called Protein kinase C-alpha-binding protein, is highly expressed in brain and testes. PICK1 plays a key role in the trafficking of AMPA receptors, which are critical for regulating synaptic strength and may be important in cellular processes involved in learning and memory. PICK1 is also critical in the early stages of spermiogenesis. Mice deficient in PICK1 are infertile and show characteristics of the human disease globozoospermia such as round-headed sperm, reduced sperm count, and severely impaired sperm motility. PICK1 may also be involved in the neuropathogenesis of schizophrenia. PICK1 contains an N-terminal PDZ domain and a C-terminal BAR domain. BAR domains form dimers th
Probab=50.38 E-value=2.3e+02 Score=26.82 Aligned_cols=94 Identities=15% Similarity=0.189 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q psy5492 135 KLLTKVNKTKNDYHVACKAERSASNQERNASADSSLSMDQLKKMQDRVQKAKEEVQKAKEKYELALQELNSYNPKYMEDM 214 (361)
Q Consensus 135 ~~~~kl~KaKK~Y~~~Ckee~~a~~~e~~a~~d~~~s~ke~eKl~~K~~K~~~~~~kak~eY~~~l~~ln~~r~~yeeeM 214 (361)
-..++.+.||=.|.+-|.+.+.....+... ... +..--.++.+.-+|+-.+......|..|..-=
T Consensus 103 lTikkY~~ar~EY~ayc~kvkEmd~ee~~~-----~~~----------~e~l~rvetgnyeyrl~lRcrq~~r~kf~kLR 167 (215)
T cd07659 103 LTIKKYADVKFEYLSYCLKVKEMDDEEYSY-----AAL----------DEPLYRVETGNYEYRLILRCRQEARARFAKLR 167 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccc-----ccc----------cCcHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 345677888999999998854332211110 000 00112244567899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5492 215 SVVFDKCQEMETTRLQFFKDSLFSIHKCL 243 (361)
Q Consensus 215 ~~~~d~~Q~lEe~RI~flK~~L~~y~~~l 243 (361)
..+..+++-+|+.++..|-..|+.+++.+
T Consensus 168 ~DV~vKlelLe~k~vk~i~~QL~~f~~ai 196 (215)
T cd07659 168 QDVLEKLELLDQKHVQDIVFQLQRFVSAL 196 (215)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998888
No 74
>KOG0804|consensus
Probab=50.32 E-value=3.3e+02 Score=28.69 Aligned_cols=57 Identities=16% Similarity=0.382 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5492 139 KVNKTKNDYHVACKAERSASNQERNASADSSLSMDQLKKMQDRVQKAKEEVQKAKEK 195 (361)
Q Consensus 139 kl~KaKK~Y~~~Ckee~~a~~~e~~a~~d~~~s~ke~eKl~~K~~K~~~~~~kak~e 195 (361)
+++..|..|..+-.+.+..........+......+.+.+++.|+++++.+.+.-++.
T Consensus 348 qlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~ 404 (493)
T KOG0804|consen 348 QLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREE 404 (493)
T ss_pred HHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666555443211111110000223455667777877777776655533
No 75
>KOG0250|consensus
Probab=50.16 E-value=4.7e+02 Score=30.44 Aligned_cols=123 Identities=15% Similarity=0.154 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q psy5492 135 KLLTKVNKTKNDYHVACKAERSASNQERNASADSSLSMDQLKKMQDRVQKAKEEVQKAKEKYELALQELNSYNPKYMEDM 214 (361)
Q Consensus 135 ~~~~kl~KaKK~Y~~~Ckee~~a~~~e~~a~~d~~~s~ke~eKl~~K~~K~~~~~~kak~eY~~~l~~ln~~r~~yeeeM 214 (361)
..-..+.+.|+.++..|+...-+..+. ......++.+++.+++..+.++++.+..-....+++|.++..+...
T Consensus 362 ~~~n~i~~~k~~~d~l~k~I~~~~~~~------~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~- 434 (1074)
T KOG0250|consen 362 EIENSIRKLKKEVDRLEKQIADLEKQT------NNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEE- 434 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 334445555666666655533221111 1234567788888888888888888775444444444444333211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccc------cCcchhhhhhhHHhHHHHhhhc
Q psy5492 215 SVVFDKCQEMETTRLQFFKDSLFSIHKCL-NIS------QDPTVLHIKERKEMEDAFKKAQ 268 (361)
Q Consensus 215 ~~~~d~~Q~lEe~RI~flK~~L~~y~~~l-d~~------~~~~~~~~~~~~~~~~~~~~~~ 268 (361)
=+..-. .+.+|..++..+..+..+| ++. ...++...-.-|++|+.-.++|
T Consensus 435 ---~ee~~~-i~~~i~~l~k~i~~~~~~l~~lk~~k~dkvs~FG~~m~~lL~~I~r~~~~f 491 (1074)
T KOG0250|consen 435 ---EEEKEH-IEGEILQLRKKIENISEELKDLKKTKTDKVSAFGPNMPQLLRAIERRKRRF 491 (1074)
T ss_pred ---HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcchhhHHHHHHHHHHHhcC
Confidence 111111 1233444444444444444 221 1236677778888999888883
No 76
>cd07661 BAR_ICA69 The Bin/Amphiphysin/Rvs (BAR) domain of Islet Cell Autoantigen 69-kDa. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Islet cell autoantigen 69-kDa (ICA69) is a diabetes-associated autoantigen that is highly expressed in brain and beta cells. It is involved in membrane trafficking at the Golgi complex in neurosecretory cells. It is coexpressed with Protein Interacting with C Kinase 1 (PICK1), also a the BAR domain containing protein, in many tissues at different developmental stages. In neurons, ICA69 colocalizes with PICK1 in cell bodies and dendrites but is absent in synapses where PICK1 is enriched. ICA69 contains an N-terminal BAR domain and a conserved C-terminal domain of unknown function. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. ICA69 associate
Probab=49.78 E-value=2.2e+02 Score=26.62 Aligned_cols=168 Identities=18% Similarity=0.206 Sum_probs=89.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhh-hhHhHHHHH--HHhhhhhH-----HhH
Q psy5492 50 YKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNKKWNELIEKVMR-TCWQKDTYH--KTVLHIKE-----RKE 121 (361)
Q Consensus 50 y~~l~krik~G~~~ckeL~~flKERA~IEeeYAK~L~kLaKK~~~~~e~g~l-~aWq~~~~H--~qL~~~KE-----~K~ 121 (361)
|..+-..-.+=.+..+.+...|..=+.-|.+-|+-|..++.+-.... |.+ .+=++..++ .++.+.|. .-+
T Consensus 11 frsvq~t~~~Llk~i~~yq~~l~~lsq~e~~LG~fl~e~~~~d~t~a--g~~m~~t~KaL~~sg~qrl~~r~pl~~f~~~ 88 (204)
T cd07661 11 FRSVQDTCLELLKIIDNYQERLCILSQEENVLGKFLKEQGKIDKTTA--GKMMAATGKALSFSSQQRLALRVPLLRLYQE 88 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhh--ccHHHHHHHHHHHhHHHHHHHHhhHHHHHHH
Confidence 34444444444555555556666666777777777777765532111 222 111111111 12211110 011
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5492 122 MEDAFKKAQKPWCKLLTKVNKTKNDYHVACKAERSASNQERNASADSSLSMDQLKKMQDRVQKAKEEVQKAKEKYELALQ 201 (361)
Q Consensus 122 ~e~~~~KaqK~~~~~~~kl~KaKK~Y~~~Ckee~~a~~~e~~a~~d~~~s~ke~eKl~~K~~K~~~~~~kak~eY~~~l~ 201 (361)
++--..++-..-....+.++.||-.|...-...+.... ..||. +.+.++| .++++..+..+++.|.
T Consensus 89 v~Tf~~rai~Dtl~Ti~~~E~aR~EY~a~~~~mk~~s~-----eldP~-~~~~l~k----fr~aQ~qvr~~K~kfd---- 154 (204)
T cd07661 89 VETFRERAIADTLQTIQRMEKCRTEYRAALLWMKSVSQ-----ELDPD-TYKQLEK----FRKAQAQVRSAKERFD---- 154 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhh-----hcCCc-cchhHHH----HHHHHHHHHHHHHHHH----
Confidence 11101122222234456678888888887766543211 12332 2344444 3446666666666663
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5492 202 ELNSYNPKYMEDMSVVFDKCQEMETTRLQFFKDSLFSIHKCL 243 (361)
Q Consensus 202 ~ln~~r~~yeeeM~~~~d~~Q~lEe~RI~flK~~L~~y~~~l 243 (361)
.-=-.+|.++--+++.|...|...|+.|++.|
T Consensus 155 ----------kLk~Dv~qKvdlL~asR~n~ls~~L~~yqnal 186 (204)
T cd07661 155 ----------KLKMDVCQKVDLLGASRCNLLSHALVTYQNTL 186 (204)
T ss_pred ----------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22336788999999999999999999999988
No 77
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=48.46 E-value=1.7e+02 Score=24.86 Aligned_cols=87 Identities=23% Similarity=0.300 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q psy5492 135 KLLTKVNKTKNDYHVACKAERSASNQERNASADSSLSMDQLKKMQDRVQKAKEEVQKAKEKYELALQELNSYNPKYMEDM 214 (361)
Q Consensus 135 ~~~~kl~KaKK~Y~~~Ckee~~a~~~e~~a~~d~~~s~ke~eKl~~K~~K~~~~~~kak~eY~~~l~~ln~~r~~yeeeM 214 (361)
..++.+.++++.|+.+..+.+.+..+......... ...++..++.++..+++.| +..-
T Consensus 91 ~~~~~~~~~~k~~~~~~~~yd~~~~k~~~~~~~~~--------~~~~l~~~~~~~~~ar~~y--------------~~~~ 148 (194)
T cd07307 91 KDLKEIKKRRKKLDKARLDYDAAREKLKKLRKKKK--------DSSKLAEAEEELQEAKEKY--------------EELR 148 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC--------ChhHHHHHHHHHHHHHHHH--------------HHHH
Confidence 44566777777777777776555433321110000 1222333444444444444 3333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5492 215 SVVFDKCQEMETTRLQFFKDSLFSIHKCL 243 (361)
Q Consensus 215 ~~~~d~~Q~lEe~RI~flK~~L~~y~~~l 243 (361)
..+...++.+...|...+...|..|..+.
T Consensus 149 ~~~~~~l~~~~~~~~~~~~~~L~~~~~~q 177 (194)
T cd07307 149 EELIEDLNKLEEKRKELFLSLLLSFIEAQ 177 (194)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 44455555555666667777777776654
No 78
>cd07619 BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 2 (Rich2) is a Rho GTPase activating protein that interacts with CD317, a lipid raft-associated integral membrane protein. It plays a role in actin cytoskeleton organization and the maintenance of microvilli in polarized epithelial cells. Rich2 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=47.33 E-value=2.7e+02 Score=26.85 Aligned_cols=21 Identities=14% Similarity=0.123 Sum_probs=15.6
Q ss_pred chHHHHHHHHHHHHHHHHHHH
Q psy5492 49 NYKRTTKRIEDGYKLCNDLIA 69 (361)
Q Consensus 49 Gy~~l~krik~G~~~ckeL~~ 69 (361)
.|..+.+|++--..++.+|..
T Consensus 16 ~~~~le~r~D~~k~~~~~i~k 36 (248)
T cd07619 16 DLLQVEKRLELVKQVSHSTHK 36 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 678888888887777766543
No 79
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=47.01 E-value=3.9e+02 Score=28.58 Aligned_cols=25 Identities=16% Similarity=0.372 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHhh
Q psy5492 75 ADIEKAYAKSLKGWNKKWNELIEKV 99 (361)
Q Consensus 75 A~IEeeYAK~L~kLaKK~~~~~e~g 99 (361)
..+...|=.+|..|..-|....+.|
T Consensus 222 ~~~~~~~P~ql~el~~gy~~m~~~g 246 (569)
T PRK04778 222 KELQTELPDQLQELKAGYRELVEEG 246 (569)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHcC
Confidence 5677888889999998888777766
No 80
>cd07686 F-BAR_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fer (Fes related) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fer (Fes related) is a cytoplasmic (or nonreceptor) tyrosine kinase expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membran
Probab=45.71 E-value=2.8e+02 Score=26.49 Aligned_cols=25 Identities=28% Similarity=0.527 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHH
Q psy5492 190 QKAKEKYELALQELNSYNPKYMEDM 214 (361)
Q Consensus 190 ~kak~eY~~~l~~ln~~r~~yeeeM 214 (361)
.+++..|..+..++|..++.|.-.+
T Consensus 161 ~Ka~~k~~~~~~km~~~kN~Yll~i 185 (234)
T cd07686 161 EKARERYDKATMKLHMLHNQYVLAV 185 (234)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 4555556666666666666665443
No 81
>PF04782 DUF632: Protein of unknown function (DUF632); InterPro: IPR006867 This conserved region contains a leucine zipper-like domain. The proteins are found only in plants and their functions are unknown.
Probab=42.92 E-value=3.5e+02 Score=26.91 Aligned_cols=79 Identities=13% Similarity=0.201 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q psy5492 135 KLLTKVNKTKNDYHVACKAERSASNQERNASADSSLSMDQLKKMQDRVQKAKEEVQKAKEKYELALQELNSYNPKYMEDM 214 (361)
Q Consensus 135 ~~~~kl~KaKK~Y~~~Ckee~~a~~~e~~a~~d~~~s~ke~eKl~~K~~K~~~~~~kak~eY~~~l~~ln~~r~~yeeeM 214 (361)
.-.+.-++.|..|+..|...+... .+ +.....++|.+.-+++....+..+-..-...-..++++|+ ++-.
T Consensus 99 ~EVKa~E~~r~~yeKK~~~Lr~~d--~k------g~~~~kidkTra~v~~L~tri~Vaiq~v~siS~~I~kLRD--eEL~ 168 (312)
T PF04782_consen 99 DEVKAEEKLRIEYEKKCKQLRKQD--AK------GADSSKIDKTRASVKDLHTRIRVAIQSVDSISKRIEKLRD--EELY 168 (312)
T ss_pred HHHHccHHHHHHHHHHHHHHHHHH--hC------CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence 334566888999999998765431 11 3445566777777777666666666665555666666666 2445
Q ss_pred HHHHHHHHH
Q psy5492 215 SVVFDKCQE 223 (361)
Q Consensus 215 ~~~~d~~Q~ 223 (361)
|++.+.+|-
T Consensus 169 PQL~eLi~G 177 (312)
T PF04782_consen 169 PQLVELIQG 177 (312)
T ss_pred HHHHHHHHH
Confidence 666665555
No 82
>KOG1451|consensus
Probab=42.87 E-value=4.9e+02 Score=28.55 Aligned_cols=44 Identities=20% Similarity=0.314 Sum_probs=35.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5492 49 NYKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNKKW 92 (361)
Q Consensus 49 Gy~~l~krik~G~~~ckeL~~flKERA~IEeeYAK~L~kLaKK~ 92 (361)
..+.+.+.|+.-++-|++|+..+|.=+..-..+|+.|+..-=..
T Consensus 28 el~~tnkfik~~ikdg~~li~a~knls~a~~kfa~tl~~f~f~~ 71 (812)
T KOG1451|consen 28 ELDRTNKFIKELIKDGKELISALKNLSSAVRKFAQTLQEFKFEC 71 (812)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhheeee
Confidence 56777888888899999999999988888888888887764333
No 83
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=42.53 E-value=2.7e+02 Score=25.53 Aligned_cols=39 Identities=21% Similarity=0.417 Sum_probs=24.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q psy5492 170 LSMDQLKKMQDRVQKAKEEVQKAKEKYELALQELNSYNPKYMEDMSVVFD 219 (361)
Q Consensus 170 ~s~ke~eKl~~K~~K~~~~~~kak~eY~~~l~~ln~~r~~yeeeM~~~~d 219 (361)
.+.++. .++.+++.+++.|++.| +.+...-.+++|..++
T Consensus 143 ~~~kd~----~kl~kae~~l~~a~~~y-------~~lN~~Lk~eLP~l~~ 181 (216)
T cd07599 143 LSLKDE----KQLAKLERKLEEAKEEY-------EALNELLKSELPKLLA 181 (216)
T ss_pred CChhHH----HHHHHHHHHHHHHHHHH-------HHHHHHHHHHhHHHHH
Confidence 455554 34455777777788777 4445555667777766
No 84
>KOG4403|consensus
Probab=41.68 E-value=4.4e+02 Score=27.70 Aligned_cols=61 Identities=15% Similarity=0.258 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy5492 172 MDQLKKMQDRVQKAKEEVQKA-------------KEKYELALQELNSYNPKYMEDMSVVFDKCQEMETTRLQFF 232 (361)
Q Consensus 172 ~ke~eKl~~K~~K~~~~~~ka-------------k~eY~~~l~~ln~~r~~yeeeM~~~~d~~Q~lEe~RI~fl 232 (361)
.++++-++..+++++.+.+.- +-.|+.-+.-+|..|+.=+..|..+-+.+..+-.+|-..|
T Consensus 308 rkelE~lR~~L~kAEkele~nS~wsaP~aLQ~wLq~T~E~E~q~~~kkrqnaekql~~Ake~~eklkKKrssv~ 381 (575)
T KOG4403|consen 308 RKELEQLRVALEKAEKELEANSSWSAPLALQKWLQLTHEVEVQYYNKKRQNAEKQLKEAKEMAEKLKKKRSSVF 381 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhcchh
Confidence 356677777777766665432 3345555666666677667777777766666666665444
No 85
>cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ASAPs (ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) with similarity to ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins) in that they contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and ankyrin (ANK) repeats. However, ASAPs contain an additional C-terminal SH3 domain. ASAPs function in regulating cell growth, migration, and invasion. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3. ASAP1 and ASAP2 shows GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but is able to mediate
Probab=39.20 E-value=3.3e+02 Score=25.52 Aligned_cols=41 Identities=12% Similarity=0.024 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5492 54 TKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNKKWNE 94 (361)
Q Consensus 54 ~krik~G~~~ckeL~~flKERA~IEeeYAK~L~kLaKK~~~ 94 (361)
-.++..-.+.|+.+.+-.+.=.+-+..|+..|.+|...+.+
T Consensus 15 ~~~l~Kl~K~~k~~~~~g~~~~~~~~~F~~aL~~~g~~~~~ 55 (215)
T cd07604 15 RVGLQKLKKAVKAIHNSGLAHVENELQFAEALEKLGSKALS 55 (215)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccC
Confidence 34444447888888888888888999999999999977643
No 86
>KOG3771|consensus
Probab=38.86 E-value=4.9e+02 Score=27.41 Aligned_cols=58 Identities=26% Similarity=0.490 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5492 176 KKMQDRVQKAKEEVQKAKEKYELALQELNSYNPKYMEDMSVVFDKCQEMETTRLQFFKDSLFSIH 240 (361)
Q Consensus 176 eKl~~K~~K~~~~~~kak~eY~~~l~~ln~~r~~yeeeM~~~~d~~Q~lEe~RI~flK~~L~~y~ 240 (361)
+|++.+.++-..+..+|+++...+-+.+..++..-.++||.+++ .||.|+...|.++.
T Consensus 146 ~kvq~~k~kd~~k~~KAeeEl~~Aq~~fE~lN~~L~eELP~L~~-------sRv~f~vp~Fqsl~ 203 (460)
T KOG3771|consen 146 EKLQAKKKKDEAKLAKAEEELEKAQQVFEELNNELLEELPALYS-------SRVGFFVPTFQSLF 203 (460)
T ss_pred HHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhhhhhcchHHHHH
Confidence 34444444555555556666666666665566666666666665 56666666665554
No 87
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=37.97 E-value=4.1e+02 Score=28.59 Aligned_cols=108 Identities=19% Similarity=0.222 Sum_probs=60.2
Q ss_pred hHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5492 117 KERKEMEDAFKKAQKPWCKLLTKVNKTKNDYHVACKAERSASNQERNASADSSLSMDQLKKMQDRVQKAKEEVQKAKEKY 196 (361)
Q Consensus 117 KE~K~~e~~~~KaqK~~~~~~~kl~KaKK~Y~~~Ckee~~a~~~e~~a~~d~~~s~ke~eKl~~K~~K~~~~~~kak~eY 196 (361)
++.++++..++..+..|...++.|.. |..+...-+..+.. ... .--++.++.+....+++...+++..++.+
T Consensus 164 ~~~~~~~~~~k~~~~~w~~~~~~Lp~-~~~~~~yk~~v~~i--~~~-----~ik~p~~i~~~~~e~d~lk~e~~~~~~~i 235 (555)
T TIGR03545 164 ETAEEIEKSLKAMQQKWKKRKKDLPN-KQDLEEYKKRLEAI--KKK-----DIKNPLELQKIKEEFDKLKKEGKADKQKI 235 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC-chhHHHHHHHHHHH--Hhc-----cCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466667777777788888887762 43333322221111 111 13467788888777777777776666666
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5492 197 ELALQELNSYNPKYMEDMSVVFDKCQEMETTRLQFFKDSLFSI 239 (361)
Q Consensus 197 ~~~l~~ln~~r~~yeeeM~~~~d~~Q~lEe~RI~flK~~L~~y 239 (361)
+..-++++. +-..+-..+.+++...-.-++.+...|
T Consensus 236 ~~~~~~l~~-------~~~~~~~~~~~lk~ap~~D~~~L~~~~ 271 (555)
T TIGR03545 236 KSAKNDLQN-------DKKQLKADLAELKKAPQNDLKRLENKY 271 (555)
T ss_pred HHHHHHHHH-------hHHHHHHHHHHHHhccHhHHHHHHHHh
Confidence 555444444 444444555555555545555444444
No 88
>cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 161 (Rvs161p) and Schizosaccharomyces pombe Hob3 (homolog of Bin3). S. cerevisiae Rvs161p plays a role in regulating cell polarity, actin cytoskeleton polarization, vesicle trafficking, endocytosis, bud formation, and the mating response. It forms a heterodimer with another BAR domain protein Rvs167p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. S. pombe Hob3 is important in regulating filamentous actin localization an
Probab=37.65 E-value=3.5e+02 Score=25.37 Aligned_cols=47 Identities=21% Similarity=0.458 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5492 180 DRVQKAKEEVQKAKEKYELALQELNSYNPKYMEDMSVVFDKCQEMETTRLQFFKDSLFSIH 240 (361)
Q Consensus 180 ~K~~K~~~~~~kak~eY~~~l~~ln~~r~~yeeeM~~~~d~~Q~lEe~RI~flK~~L~~y~ 240 (361)
.++.+++.+++.|++.| +.+...-.+++|..++ .|+.|+-..+..+.
T Consensus 144 ~kL~kae~el~~a~~~Y-------e~lN~~Lk~ELP~l~~-------~r~~~l~~~f~s~~ 190 (224)
T cd07591 144 TKLPRAEKELDEAKEVY-------ETLNDQLKTELPQLVD-------LRIPYLDPSFEAFV 190 (224)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHhHHHHH-------HHHHHHHHHHHHHH
Confidence 55667777888888888 4445555667777666 56666666555543
No 89
>cd07656 F-BAR_srGAP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs, all of which are expressed during embryonic and early development in the nervous system but with different localization and timing. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=37.19 E-value=3.7e+02 Score=25.54 Aligned_cols=26 Identities=8% Similarity=0.268 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5492 66 DLIALIQERADIEKAYAKSLKGWNKK 91 (361)
Q Consensus 66 eL~~flKERA~IEeeYAK~L~kLaKK 91 (361)
|=.++|..|...|-..-..|+++.++
T Consensus 5 dQ~~~L~~~te~~i~lLed~~~F~r~ 30 (241)
T cd07656 5 EQLKCLDLRTEAQVQLLADLQDYFRR 30 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777888887777777777765
No 90
>PRK11637 AmiB activator; Provisional
Probab=36.99 E-value=4.5e+02 Score=26.84 Aligned_cols=29 Identities=10% Similarity=0.242 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5492 173 DQLKKMQDRVQKAKEEVQKAKEKYELALQ 201 (361)
Q Consensus 173 ke~eKl~~K~~K~~~~~~kak~eY~~~l~ 201 (361)
.++.+++..+...+.++...+..+...+.
T Consensus 103 ~ei~~l~~eI~~~q~~l~~~~~~l~~rlr 131 (428)
T PRK11637 103 KQIDELNASIAKLEQQQAAQERLLAAQLD 131 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443333
No 91
>cd07641 BAR_ASAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP1 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1) is also known as DDEF1 (Development and Differentiation Enhancing Factor 1), AMAP1, centaurin beta-4, or PAG2. ASAP1 is an Arf GTPase activating protein (GAP) with activity towards Arf1 and Arf5 but not Arf6 However, it has been shown to bind GTP-Arf6 stably without GAP activity. It has been implicated in cell growth, migration, and survival, as well as in tumor invasion and malignancy. It binds paxillin and cortactin, two components of invadopodia which are essential for tumor invasiveness. It also binds focal adhesion kinase (FAK) and the SH2/SH3 adaptor CrkL. ASAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Ar
Probab=35.58 E-value=3.9e+02 Score=25.29 Aligned_cols=43 Identities=14% Similarity=0.243 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5492 50 YKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNKKW 92 (361)
Q Consensus 50 y~~l~krik~G~~~ckeL~~flKERA~IEeeYAK~L~kLaKK~ 92 (361)
-+.+-.++..-.++|+-+.+=-+.=.+-++.|+..|.+|....
T Consensus 11 l~~~e~~L~Kl~K~~kam~~SG~~yv~n~~~f~~~l~~Lg~~~ 53 (215)
T cd07641 11 LDQDRTALQKVKKSVKAIYNSGQDHVQNEENYAQALDKFGSNF 53 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444455555689999999999999999999999999999988
No 92
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=35.10 E-value=4.5e+02 Score=25.99 Aligned_cols=69 Identities=7% Similarity=0.275 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHh
Q psy5492 175 LKKMQDRVQKAKEEVQKAKEKYELALQELNSYNPKYMEDMSVVFDKCQEMETTR--LQFFKDSLFSIHKCL 243 (361)
Q Consensus 175 ~eKl~~K~~K~~~~~~kak~eY~~~l~~ln~~r~~yeeeM~~~~d~~Q~lEe~R--I~flK~~L~~y~~~l 243 (361)
+..|+.|+......+..-+.+-...=.+|-+++.+|.++=-.=.+.-=.|-|.| |..||+++-...+.|
T Consensus 70 iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrssL 140 (305)
T PF15290_consen 70 IRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSL 140 (305)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 446666666666666655556555666777888888865333333333455555 567777777776666
No 93
>KOG0994|consensus
Probab=34.73 E-value=8.6e+02 Score=29.04 Aligned_cols=26 Identities=15% Similarity=0.143 Sum_probs=14.9
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy5492 127 KKAQKPWCKLLTKVNKTKNDYHVACK 152 (361)
Q Consensus 127 ~KaqK~~~~~~~kl~KaKK~Y~~~Ck 152 (361)
..+.+.+.+....+++.|.+|-+--.
T Consensus 1615 ~~a~q~~~eL~~~~e~lk~~~~qns~ 1640 (1758)
T KOG0994|consen 1615 TSATQQLGELETRMEELKHKAAQNSA 1640 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 34445555666666666666655433
No 94
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=34.67 E-value=3.4e+02 Score=24.33 Aligned_cols=60 Identities=17% Similarity=0.285 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5492 176 KKMQDRVQKAKEEVQKAKEKYELALQELNSYNPKYMEDMSVVFDKCQEMETTRLQFFKDS 235 (361)
Q Consensus 176 eKl~~K~~K~~~~~~kak~eY~~~l~~ln~~r~~yeeeM~~~~d~~Q~lEe~RI~flK~~ 235 (361)
+.+...+.-+.+...+.+.+|+.+++.+|.-...=-.-.....+.+++-|..|+.-|-+.
T Consensus 94 D~vNreLkpl~~~cqKKEkEykealea~nEknkeK~~Lv~~L~eLv~eSE~~rmKKLEEL 153 (159)
T PF04949_consen 94 DSVNRELKPLGQSCQKKEKEYKEALEAFNEKNKEKAQLVTRLMELVSESERLRMKKLEEL 153 (159)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444566678889999999999999888777777777888888888888777653
No 95
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=34.64 E-value=4.2e+02 Score=25.39 Aligned_cols=37 Identities=27% Similarity=0.526 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy5492 173 DQLKKMQDRVQKAKEEVQKAKEKYELALQELNSYNPK 209 (361)
Q Consensus 173 ke~eKl~~K~~K~~~~~~kak~eY~~~l~~ln~~r~~ 209 (361)
.+++....++..++..+..++..|..++..|+.+.+.
T Consensus 184 ~~l~~~k~~v~~Le~~v~~aK~~Y~~ALrnLE~ISee 220 (239)
T PF05276_consen 184 QQLEEQKEKVEELEAKVKQAKSRYSEALRNLEQISEE 220 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667788888889999999999999888876653
No 96
>cd07685 F-BAR_Fes The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), is a cytoplasmic (or nonreceptor) tyrosine kinase whose gene was first isolated from tumor-causing retroviruses. It is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells, and plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. Fes kinase has also been implicated as a tumor suppressor in colorectal cancer. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane def
Probab=32.89 E-value=4.5e+02 Score=25.24 Aligned_cols=61 Identities=11% Similarity=0.227 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5492 131 KPWCKLLTKVNKTKNDYHVACKAERSASNQERNASADSSLSMDQLKKMQDRVQKAKEEVQKAKEKYELAL 200 (361)
Q Consensus 131 K~~~~~~~kl~KaKK~Y~~~Ckee~~a~~~e~~a~~d~~~s~ke~eKl~~K~~K~~~~~~kak~eY~~~l 200 (361)
..+.....+...+||.|-..-+.....-. ..+..+++|++..++++-+.++.|++.|..+.
T Consensus 98 ~kLs~L~~~k~~~rK~~~~~~q~i~~e~~---------~~t~~eveK~Kk~Y~~~c~~~e~AR~K~ekas 158 (237)
T cd07685 98 SKLSLLIRDKQQLRKTFSEQWQLLKQEYT---------KTTQQDIEKLKSQYRSLAKDSAQAKRKYQEAS 158 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44555666677777777765544221111 12233455555555555555554444444433
No 97
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=32.87 E-value=4.4e+02 Score=25.08 Aligned_cols=14 Identities=29% Similarity=0.503 Sum_probs=11.1
Q ss_pred ChhhHHHHHHHHHh
Q psy5492 313 RLPQIYEEFYHTIN 326 (361)
Q Consensus 313 ~~~~~~~~~~~~~~ 326 (361)
++..||.++.++|.
T Consensus 245 ~~~~~~~~~~~~~~ 258 (258)
T cd07655 245 SFKAIYRDLQQTII 258 (258)
T ss_pred hHHHHHHHHHhhcC
Confidence 67788999888873
No 98
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=32.47 E-value=3.9e+02 Score=24.35 Aligned_cols=40 Identities=13% Similarity=0.138 Sum_probs=29.6
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5492 204 NSYNPKYMEDMSVVFDKCQEMETTRLQFFKDSLFSIHKCL 243 (361)
Q Consensus 204 n~~r~~yeeeM~~~~d~~Q~lEe~RI~flK~~L~~y~~~l 243 (361)
+.++..|+.=-..+-..++.++..|..-|+.+|..|....
T Consensus 180 ~~~~~~~~~is~~~k~E~~rf~~~k~~d~k~~l~~~~~~~ 219 (236)
T PF09325_consen 180 EQAKDEFEEISENIKKELERFEKEKVKDFKSMLEEYAESQ 219 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555556777888899999999999999997655
No 99
>KOG2150|consensus
Probab=32.11 E-value=6.9e+02 Score=27.09 Aligned_cols=68 Identities=7% Similarity=-0.023 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcchhhhhhhHHhHHHHhhhc
Q psy5492 193 KEKYELALQELNSYNPKYMEDMSVVFDKCQEMETTRLQFFKDSLFSIHKCLNISQDPTVLHIKERKEMEDAFKKAQ 268 (361)
Q Consensus 193 k~eY~~~l~~ln~~r~~yeeeM~~~~d~~Q~lEe~RI~flK~~L~~y~~~ld~~~~~~~~~~~~~~~~~~~~~~~~ 268 (361)
..=...+|..||++-+.|+. +-++.+++.-+-++.+|.-+|....|-- -..+.+++-++.|+-.|.-|
T Consensus 124 ~~wi~~~ideLe~q~d~~ea---~~~e~~~erh~~H~~~lEliLr~L~N~E-----~~pe~v~~vqDdi~yyVe~n 191 (575)
T KOG2150|consen 124 MDWISNQIDELERQVDSFEA---EELERFIERHRWHQQKLELILRLLDNDE-----LDPEAVNKVQDDITYYVESN 191 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhccc-----cCHHHHhhhhHHHHHHHHhc
Confidence 34455678888888888887 5567788888888888887777664322 13344556666666666544
No 100
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=31.22 E-value=4.3e+02 Score=24.47 Aligned_cols=167 Identities=11% Similarity=0.125 Sum_probs=79.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh-hhh----hhHh-HHHHHHHhhhhhHHhH
Q psy5492 48 GNYKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNKKWNELIEK-VMR----TCWQ-KDTYHKTVLHIKERKE 121 (361)
Q Consensus 48 ~Gy~~l~krik~G~~~ckeL~~flKERA~IEeeYAK~L~kLaKK~~~~~e~-g~l----~aWq-~~~~H~qL~~~KE~K~ 121 (361)
+..+.|-.+++.-.+.|+.+++.-+.=..-=+.++..|..+..-..|.... +++ .+-+ ..++|..|+. .
T Consensus 9 ~~~~~le~~l~kl~K~~~~~~d~g~~~~~a~~~F~~~l~d~~~~~~gd~~i~~~L~kF~~~l~ei~~~~~~l~~-----q 83 (200)
T cd07637 9 TDVVEIEAKLDKLVKLCSGMIEAGKAYATTNKLFVSGIRDLSQQCKKDEMISECLDKFGDSLQEMVNYHMILFD-----Q 83 (200)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHH-----H
Confidence 456777888888888888888775544444555555555555544322111 122 1111 1134444431 1
Q ss_pred HHHHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5492 122 MEDAF-KKAQKPWCKLLTKVNKTKNDYHVACKAERSASNQERNASADSSLSMDQLKKMQDRVQKAKEEVQKAKEKYELAL 200 (361)
Q Consensus 122 ~e~~~-~KaqK~~~~~~~kl~KaKK~Y~~~Ckee~~a~~~e~~a~~d~~~s~ke~eKl~~K~~K~~~~~~kak~eY~~~l 200 (361)
++..+ ..+++=+..-+..+..+|+.|+..-.+-+.+..+. +... ..-|-++ +.+..
T Consensus 84 ~e~~l~~pL~~F~k~dL~~~KE~rK~Fdk~se~yd~al~k~--~~~k-~kk~~~l-------~Ea~~------------- 140 (200)
T cd07637 84 AQRSVRQQLHSFVKEDVRKFKETKKQFDKVREDLEIALVKN--AQAP-RHKPHEV-------EEATS------------- 140 (200)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH--hhcC-CCChHHH-------HHHHH-------------
Confidence 11111 11111122334455667777777766655554432 2110 1111111 12223
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh
Q psy5492 201 QELNSYNPKYMEDMSVVFDKCQEMET-TRLQFFKDSLFSIHKCL 243 (361)
Q Consensus 201 ~~ln~~r~~yeeeM~~~~d~~Q~lEe-~RI~flK~~L~~y~~~l 243 (361)
.+...|..|.+..-..+-+++.++. +|..||..+|.-++.++
T Consensus 141 -~L~~~Rk~f~~asLdyv~~ln~iq~kKk~e~le~ll~~~~a~~ 183 (200)
T cd07637 141 -TLTITRKCFRHLALDYVLQINVLQAKKKFEILDSMLSFMHAQY 183 (200)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455455555555666666554 56666666555555444
No 101
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=30.33 E-value=4.6e+02 Score=24.58 Aligned_cols=90 Identities=16% Similarity=0.258 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q psy5492 137 LTKVNKTKNDYHVACKAERSASNQERNASADSSLSMDQLKKMQDRVQKAKEEVQKAKEKYELALQELNSYNPKYMEDMSV 216 (361)
Q Consensus 137 ~~kl~KaKK~Y~~~Ckee~~a~~~e~~a~~d~~~s~ke~eKl~~K~~K~~~~~~kak~eY~~~l~~ln~~r~~yeeeM~~ 216 (361)
++.+.++||.-+.+.-+.+.+.++...++... .....++..|+++|..+.+.+-..-....+.-++
T Consensus 113 ~k~i~k~RKkLe~rRLdyD~~ksk~~kak~~~--------------~~~eeElr~Ae~kfees~E~a~~~M~~i~~~e~e 178 (215)
T cd07593 113 MKEYHSARKKLESRRLAYDAALTKSQKAKKED--------------SRLEEELRRAKAKYEESSEDVEARMVAIKESEAD 178 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChH
Confidence 34455556655555555555544444332110 1245566667777766666665444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy5492 217 VFDKCQEMETTRLQFFKDSLFSIH 240 (361)
Q Consensus 217 ~~d~~Q~lEe~RI~flK~~L~~y~ 240 (361)
-...|.+|=+.-+.+.+...-.+.
T Consensus 179 ~~~~L~~lv~AQl~Yh~q~~e~L~ 202 (215)
T cd07593 179 QYRDLTDLLDAELDYHQQSLDVLR 202 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555444443
No 102
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=30.06 E-value=4.9e+02 Score=24.80 Aligned_cols=21 Identities=19% Similarity=0.357 Sum_probs=17.6
Q ss_pred chHHHHHHHHHHHHHHHHHHH
Q psy5492 49 NYKRTTKRIEDGYKLCNDLIA 69 (361)
Q Consensus 49 Gy~~l~krik~G~~~ckeL~~ 69 (361)
.|..+-++++.-.+++..+..
T Consensus 16 ~~~~lE~~~d~~k~~~~~~~k 36 (244)
T cd07595 16 ELLQIEKRVEAVKDACQNIHK 36 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 688899999888888888866
No 103
>PHA03158 hypothetical protein; Provisional
Probab=29.35 E-value=43 Score=31.24 Aligned_cols=36 Identities=33% Similarity=0.720 Sum_probs=22.4
Q ss_pred HhhcCchhHHHhHHHHHHHH--------hhcCCChhhHHHHHHHHH
Q psy5492 288 FKKAQKPWCIMQHLKLICIL--------KCCYSRLPQIYEEFYHTI 325 (361)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~ 325 (361)
++.+.|||||.-.-+-+.++ ||| .-..--.++...|
T Consensus 220 l~Rs~pPWCv~t~~EK~~~~kQllka~kkc~--~~s~~~~~leeei 263 (273)
T PHA03158 220 IKRSGPPWCIKTAKEKAAILKQLLKAAKKCC--KNSEHEKELEEEI 263 (273)
T ss_pred HhccCCCcEeecHHHhHHHHHHHHHHHHHHh--cchHHHHHHHHHH
Confidence 57889999997665555543 688 4444334444443
No 104
>PF09537 DUF2383: Domain of unknown function (DUF2383); InterPro: IPR019052 This entry represents a functionally uncharacterised ferritin like domain.; PDB: 3FSE_B.
Probab=28.79 E-value=1.3e+02 Score=24.30 Aligned_cols=48 Identities=23% Similarity=0.260 Sum_probs=35.6
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh
Q psy5492 46 EPGNYKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNKKWNELIEK 98 (361)
Q Consensus 46 g~~Gy~~l~krik~G~~~ckeL~~flKERA~IEeeYAK~L~kLaKK~~~~~e~ 98 (361)
+..||+....++++ .+|..+|.+++..-..++..|+......++..+.
T Consensus 16 ~~~~Y~~a~~~~~~-----~~lk~~f~~~~~~~~~~~~~L~~~i~~~Gg~p~~ 63 (111)
T PF09537_consen 16 GIEGYEKAAEKAED-----PELKSLFQEFAQERQQHAEELQAEIQELGGEPEE 63 (111)
T ss_dssp HHHHHHHHHHH--S-----HHHHHHHHHHHHHHHHHHHHHHHHHHHTT--H--
T ss_pred HHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCc
Confidence 44578888888775 5788999999999999999999999998765543
No 105
>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=28.77 E-value=5.4e+02 Score=24.82 Aligned_cols=19 Identities=5% Similarity=-0.076 Sum_probs=9.0
Q ss_pred HHHHhhcCCChhhHHHHHH
Q psy5492 304 ICILKCCYSRLPQIYEEFY 322 (361)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~ 322 (361)
..|-++|.|.+...++.|.
T Consensus 230 ~~~E~~v~~~i~~cl~~~~ 248 (252)
T cd07675 230 ADSERKVIPIISKCLEGMV 248 (252)
T ss_pred HHHHHHHhHHHHHHHHHHH
Confidence 3444455555555454443
No 106
>PRK14160 heat shock protein GrpE; Provisional
Probab=28.39 E-value=5.1e+02 Score=24.39 Aligned_cols=62 Identities=15% Similarity=0.297 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5492 172 MDQLKKMQDRVQKAKEEVQKAKEKYELALQELNSYNPKYMEDMSVVFDKCQEMETTRLQFFKDSLFSI 239 (361)
Q Consensus 172 ~ke~eKl~~K~~K~~~~~~kak~eY~~~l~~ln~~r~~yeeeM~~~~d~~Q~lEe~RI~flK~~L~~y 239 (361)
.+++..++.++.++..++...++.|......+..+|.+...+...+.. ...-.|++++|..+
T Consensus 60 ~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~------~a~e~~~~~LLpVl 121 (211)
T PRK14160 60 KDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAKEKEGIYS------DACEDVLKELLPVL 121 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHhhHH
Confidence 356677788888888888888999999999998888888877766543 23445666666555
No 107
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=27.78 E-value=5.1e+02 Score=24.25 Aligned_cols=68 Identities=12% Similarity=0.201 Sum_probs=35.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5492 171 SMDQLKKMQDRVQKAKEEVQKAKEKYELALQELNSYNPKYMEDMSVVFDKCQEMETTRLQFFKDSLFSIHKCL 243 (361)
Q Consensus 171 s~ke~eKl~~K~~K~~~~~~kak~eY~~~l~~ln~~r~~yeeeM~~~~d~~Q~lEe~RI~flK~~L~~y~~~l 243 (361)
...+++.+..+++.+...+...+.+....-+.+ ..++............+| .+|.+|..-|..+-.-.
T Consensus 125 ~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~l----k~lE~~~~~~~~re~~~e-~~i~~L~~~lkeaE~Ra 192 (237)
T PF00261_consen 125 LEQELERAEERAEAAESKIKELEEELKSVGNNL----KSLEASEEKASEREDEYE-EKIRDLEEKLKEAENRA 192 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHH----HHhhhhhhhhhHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 345556666666665555555555443332222 233334444444444444 67777777776665444
No 108
>PF10552 ORF6C: ORF6C domain; InterPro: IPR018878 This entry represents the carboxy-terminal domain from ORF6 (Q9B012 from SWISSPROT), an antirepressor protein from Lactococcus phage bIL285 [].
Probab=26.91 E-value=3.7e+02 Score=22.35 Aligned_cols=51 Identities=14% Similarity=0.143 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHhccccCcchhhhhhhHHhHHHHhhhcCCCchhhHHHH
Q psy5492 227 TRLQFFKDSLFSIHKCLNISQDPTVLHIKERKEMEDAFKKAQKPWCKTVLHIK 279 (361)
Q Consensus 227 ~RI~flK~~L~~y~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~k 279 (361)
.|-..++++...+..++++.... +=.....+.+-.++..-.|...|.|-|+
T Consensus 66 ~~~k~f~~i~~~lk~~F~V~sY~--~I~~kdfd~A~~~I~~W~p~~~l~~~I~ 116 (116)
T PF10552_consen 66 FRRKLFSDIYRDLKRHFGVPSYK--DIPRKDFDEALEFINNWEPSTALKMEIK 116 (116)
T ss_pred HhHHHHHHHHHHHHHHhCCchHH--hhhHHHHHHHHHHHHHcCCCHHHHHhhC
Confidence 46667778888888888775432 2233448888899999999999988775
No 109
>KOG0810|consensus
Probab=26.56 E-value=6.4e+02 Score=24.95 Aligned_cols=131 Identities=11% Similarity=0.151 Sum_probs=61.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q psy5492 131 KPWCKLLTKVNKTKNDYHVACKAERSASNQERNASADSSLSMDQLKKMQDRVQKAKEEVQKAKEKYELALQELNSYNPKY 210 (361)
Q Consensus 131 K~~~~~~~kl~KaKK~Y~~~Ckee~~a~~~e~~a~~d~~~s~ke~eKl~~K~~K~~~~~~kak~eY~~~l~~ln~~r~~y 210 (361)
+.+...+.....+..+|-..|++--.++ ...... ...+.++++++-+- -. ...--...+.... ....=
T Consensus 130 kkf~~~M~~f~~~~~~~r~~~k~~i~Rq--l~i~~~-~~~~de~ie~~ie~-g~-------~~~f~~~~i~~~~-~~~~~ 197 (297)
T KOG0810|consen 130 KKLKELMNEFNRTQSKYREEYKERIQRQ--LFIVGG-EETTDEEIEEMIES-GG-------SEVFTQKAIQDRG-QAKQT 197 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhCC-CcCChHHHHHHHHC-CC-------hHHHHHHHHHHhh-hhHHH
Confidence 5566666777778888888888732222 111111 14566777766442 11 1111111111011 11111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcchhhhhhhHHhHHHHhhhcCCCchhh
Q psy5492 211 MEDMSVVFDKCQEMETTRLQFFKDSLFSIHKCLNISQDPTVLHIKERKEMEDAFKKAQKPWCKTV 275 (361)
Q Consensus 211 eeeM~~~~d~~Q~lEe~RI~flK~~L~~y~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 275 (361)
..++..=.+.+..+| .=|.-|-++|..++-.+.-+ .+.+|.|..-..-+-.+|.+-.-.+.+|
T Consensus 198 l~Eiq~Rh~~ik~LE-ksi~ELhqlFlDMa~LVe~Q-gEmvd~IE~nV~~A~~~V~~g~~~~~kA 260 (297)
T KOG0810|consen 198 LAEIQERHDEIKKLE-KSIRELHQLFLDMAVLVESQ-GEMVDRIENNVENAVDYVEQGVDHLKKA 260 (297)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122333333444444 33444555555554444222 1345666666555566666666667776
No 110
>PF11285 DUF3086: Protein of unknown function (DUF3086); InterPro: IPR021437 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=26.48 E-value=5.4e+02 Score=25.19 Aligned_cols=136 Identities=19% Similarity=0.336 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH---HhccccCcchhhhh---h-
Q psy5492 188 EVQKAKEKYELALQELNSYNPKYMEDMSVVFDKCQEMETTRLQFFKDSLFS----IHK---CLNISQDPTVLHIK---E- 256 (361)
Q Consensus 188 ~~~kak~eY~~~l~~ln~~r~~yeeeM~~~~d~~Q~lEe~RI~flK~~L~~----y~~---~ld~~~~~~~~~~~---~- 256 (361)
+++.-+......|+++++-+.+-+++|...|.---+-=--|+.=||+.|.. .+. .|++...+.+.... +
T Consensus 8 eL~qrk~~Lq~eIe~LerR~~ri~~EmrtsFaG~Sq~lA~RVqGFkdYLvGsLQDLa~saEqLeLv~~~~~~~psp~~~~ 87 (283)
T PF11285_consen 8 ELEQRKQALQIEIEQLERRRERIEKEMRTSFAGQSQDLAIRVQGFKDYLVGSLQDLAQSAEQLELVPQPVVVQPSPLDEP 87 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCCCCcCCCCCccccc
Confidence 344456677788889999899999999988754433334788877776542 222 22222111000000 0
Q ss_pred -hHHhHHHHhhhcCCCchhhHHHHh----hhhhHHHHhhc---CchhHHHhHHHHHHHHhhcCCChhhHHHHHHHHHhhC
Q psy5492 257 -RKEMEDAFKKAQKPWCKTVLHIKE----RKEMEDAFKKA---QKPWCIMQHLKLICILKCCYSRLPQIYEEFYHTINNA 328 (361)
Q Consensus 257 -~~~~~~~~~~~~~p~~~~~~~~k~----~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (361)
.............|....--|... |.-.+-|-..| .||| .+|+|++.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~F~~~~~~Ir~~l~qyr~~PDyYg~PW------------------------qLRRtfe~~ 143 (283)
T PF11285_consen 88 APPPQANAAKNPPTPQFAAQTFQPDERQIRRLLDQYRTQPDYYGPPW------------------------QLRRTFEPI 143 (283)
T ss_pred ccCcccccccCCCCCcchhhhcchHHHHHHHHHHHHhhCCCccCChH------------------------HHHhcccHH
Confidence 000000011223444444445444 33333444443 3566 479999999
Q ss_pred ChHhHHHHHHhcCCCCCCC
Q psy5492 329 DHEKDLKWWSNNHGVNMAM 347 (361)
Q Consensus 329 ~~~~dl~~~~~~~g~~~~~ 347 (361)
+++.-=+||-|.-|-|.-+
T Consensus 144 hae~v~~WFF~qGGRGA~~ 162 (283)
T PF11285_consen 144 HAERVEDWFFNQGGRGAQR 162 (283)
T ss_pred HHHHHHHHHhccCCCcccc
Confidence 9999999999999988643
No 111
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=26.38 E-value=4.1e+02 Score=22.62 Aligned_cols=101 Identities=10% Similarity=0.206 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5492 120 KEMEDAFKKAQKPWCKLLTKVNKTKNDYHVACKAERSASNQERNASADSSLSMDQLKKMQDRVQKAKEEVQKAKEKYELA 199 (361)
Q Consensus 120 K~~e~~~~KaqK~~~~~~~kl~KaKK~Y~~~Ckee~~a~~~e~~a~~d~~~s~ke~eKl~~K~~K~~~~~~kak~eY~~~ 199 (361)
..+...+..++..+......+..|..+|+.--..--.......... .+...++..+......+..++......
T Consensus 20 ~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr-------~e~~~~~~~~~~l~~~~~~a~~~l~~~ 92 (132)
T PF07926_consen 20 EDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLR-------EELQELQQEINELKAEAESAKAELEES 92 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q psy5492 200 LQELNSYNPKYMEDMSVVFDKCQEMETT 227 (361)
Q Consensus 200 l~~ln~~r~~yeeeM~~~~d~~Q~lEe~ 227 (361)
-...+..+..+..++..+-.++.++...
T Consensus 93 e~sw~~qk~~le~e~~~~~~r~~dL~~Q 120 (132)
T PF07926_consen 93 EASWEEQKEQLEKELSELEQRIEDLNEQ 120 (132)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHH
No 112
>PRK14145 heat shock protein GrpE; Provisional
Probab=26.33 E-value=3.9e+02 Score=24.84 Aligned_cols=64 Identities=14% Similarity=0.237 Sum_probs=48.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5492 170 LSMDQLKKMQDRVQKAKEEVQKAKEKYELALQELNSYNPKYMEDMSVVFDKCQEMETTRLQFFKDSLFSI 239 (361)
Q Consensus 170 ~s~ke~eKl~~K~~K~~~~~~kak~eY~~~l~~ln~~r~~yeeeM~~~~d~~Q~lEe~RI~flK~~L~~y 239 (361)
.++.++..++.++.+++.++...++.|.....++..++.+...+...+... ..-.|++++|..+
T Consensus 42 ~~~~e~~~l~~~l~~le~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~------a~e~~~~~LLpV~ 105 (196)
T PRK14145 42 QTVDEIEELKQKLQQKEVEAQEYLDIAQRLKAEFENYRKRTEKEKSEMVEY------GKEQVILELLPVM 105 (196)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHhHH
Confidence 456778889999999999999999999999999999998888776655432 3344556555544
No 113
>KOG1003|consensus
Probab=26.26 E-value=5.5e+02 Score=24.08 Aligned_cols=114 Identities=17% Similarity=0.260 Sum_probs=73.9
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5492 120 KEMEDAFKKAQKPWCKLLTKVNKTKNDYHVACKAERSASNQERNASADSSLSMDQLKKMQDRVQKAKEEVQKAKEKYELA 199 (361)
Q Consensus 120 K~~e~~~~KaqK~~~~~~~kl~KaKK~Y~~~Ckee~~a~~~e~~a~~d~~~s~ke~eKl~~K~~K~~~~~~kak~eY~~~ 199 (361)
--++..+.++|-.+.....++..+-+.-...|+..+.-.++. .-....++++...+..++.-+..|+..|...
T Consensus 14 ~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~-------~kdEE~~e~~e~qLkEAk~iaE~adrK~eEV 86 (205)
T KOG1003|consen 14 QLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRA-------QKLEEKMEAQEAQLKEAKHIAEKADRKYEEV 86 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHH-------HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777888888888888877777777666654321111 1123456677777888888899999999999
Q ss_pred HHHHHhhhhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5492 200 LQELNSYNPKYMED---MSVVFDKCQEMETTRLQFFKDSLFSIHK 241 (361)
Q Consensus 200 l~~ln~~r~~yeee---M~~~~d~~Q~lEe~RI~flK~~L~~y~~ 241 (361)
+-++--+-.+++.. ....-..|.+++++ +..+.+.|.++..
T Consensus 87 arkL~iiE~dLE~~eeraE~~Es~~~eLeEe-~~~~~~nlk~l~~ 130 (205)
T KOG1003|consen 87 ARKLVIIEGELERAEERAEAAESQSEELEED-LRILDSNLKSLSA 130 (205)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-HHHhHhHHHHHHH
Confidence 88887766666633 34445555555543 4455666655543
No 114
>KOG3091|consensus
Probab=25.75 E-value=8.3e+02 Score=26.03 Aligned_cols=86 Identities=16% Similarity=0.222 Sum_probs=52.7
Q ss_pred hhHH-hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy5492 116 IKER-KEMEDAFKKAQKPWCKLLTKVNKTKNDYHVACKA-ERSASNQERNASADSSLSMDQLKKMQDRVQKAKEEVQKAK 193 (361)
Q Consensus 116 ~KE~-K~~e~~~~KaqK~~~~~~~kl~KaKK~Y~~~Cke-e~~a~~~e~~a~~d~~~s~ke~eKl~~K~~K~~~~~~kak 193 (361)
+|++ +.+.+.+..+||.-.+...+++++|.+--..... .+.....+-..+....+.+.| ++|..|++-....++.-
T Consensus 353 ~r~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikqeilr~~G~~L~~~E-E~Lr~Kldtll~~ln~P- 430 (508)
T KOG3091|consen 353 HRIRINAIGERVTELQKHHADAVAKIEEAKNRHVELSHRILRVMIKQEILRKRGYALTPDE-EELRAKLDTLLAQLNAP- 430 (508)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccH-HHHHHHHHHHHHHhcCh-
Confidence 3433 6677777788887778888899988877665554 443333332222222344333 56778888777777644
Q ss_pred HHHHHHHHHH
Q psy5492 194 EKYELALQEL 203 (361)
Q Consensus 194 ~eY~~~l~~l 203 (361)
++....|..+
T Consensus 431 nq~k~Rl~~L 440 (508)
T KOG3091|consen 431 NQLKARLDEL 440 (508)
T ss_pred HHHHHHHHHH
Confidence 6666556555
No 115
>PF15469 Sec5: Exocyst complex component Sec5
Probab=25.10 E-value=1.9e+02 Score=25.70 Aligned_cols=50 Identities=16% Similarity=0.242 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHhhhhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5492 192 AKEKYELALQELNSYNPKYMED--MSVVFDKCQEMETTRLQFFKDSLFSIHK 241 (361)
Q Consensus 192 ak~eY~~~l~~ln~~r~~yeee--M~~~~d~~Q~lEe~RI~flK~~L~~y~~ 241 (361)
.+++|...|..|.+++..|... -..++.....-=+..+.-++..||.--.
T Consensus 98 ~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~v~~eve~ii~~~r~~l~~~L~ 149 (182)
T PF15469_consen 98 KKGDYDQAINDYKKAKSLFEKYKQQVPVFQKVWSEVEKIIEEFREKLWEKLL 149 (182)
T ss_pred HcCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4689999999999999999988 7788888887777888888888876533
No 116
>PRK11637 AmiB activator; Provisional
Probab=24.97 E-value=7.5e+02 Score=25.21 Aligned_cols=6 Identities=33% Similarity=0.905 Sum_probs=4.1
Q ss_pred CCCCcc
Q psy5492 346 AMNWPQ 351 (361)
Q Consensus 346 ~~~~p~ 351 (361)
.+.||.
T Consensus 306 ~~~~Pv 311 (428)
T PRK11637 306 QAFWPV 311 (428)
T ss_pred CCccCC
Confidence 468884
No 117
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.66 E-value=4.4e+02 Score=29.70 Aligned_cols=71 Identities=18% Similarity=0.119 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------cCcchhhhhhhHHhHHHHhhhcCCCchhhHHHHhhh
Q psy5492 212 EDMSVVFDKCQEMETTRLQFFKDSLFSIHKCLNIS--------QDPTVLHIKERKEMEDAFKKAQKPWCKTVLHIKERK 282 (361)
Q Consensus 212 eeM~~~~d~~Q~lEe~RI~flK~~L~~y~~~ld~~--------~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~k~~~ 282 (361)
..+|+....+|++-++++--+-.-+..|-|..+.. -+.....|.+|...|+....|-.=.=|+-+||--+|
T Consensus 822 ~~ipey~~rL~~L~~D~Lpef~arF~~llN~~S~~~v~q~~~~L~~er~~IeERIe~IN~SL~~vdfn~gRylhIdi~k 900 (1104)
T COG4913 822 DDIPEYLARLQTLTEDALPEFLARFQELLNRSSDDGVTQLLSHLDHERALIEERIEAINDSLRRVDFNSGRYLHIDIAK 900 (1104)
T ss_pred hHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCceEEeeccc
Confidence 56899999999999999875544444444333111 122455788999999999888777777777766565
No 118
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=24.59 E-value=5.9e+02 Score=23.87 Aligned_cols=45 Identities=7% Similarity=0.257 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q psy5492 173 DQLKKMQDRVQKAKEEVQKAKEKYELALQELNSYNPKYMEDMSVVFDKC 221 (361)
Q Consensus 173 ke~eKl~~K~~K~~~~~~kak~eY~~~l~~ln~~r~~yeeeM~~~~d~~ 221 (361)
+.-.++...++.+...+.... ..|..+..+-.-++.+|..-++..
T Consensus 64 ~~Y~~ln~~ye~s~~~A~~V~----~RI~~vE~Va~ALF~EWe~EL~~Y 108 (201)
T PF11172_consen 64 DKYNALNDEYESSEDAAEEVS----DRIDAVEDVADALFDEWEQELDQY 108 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555444444 445555554444444444444443
No 119
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=23.89 E-value=6e+02 Score=23.72 Aligned_cols=22 Identities=27% Similarity=0.458 Sum_probs=15.0
Q ss_pred HHHHHHHhhcCCChhhHHHHHH
Q psy5492 301 LKLICILKCCYSRLPQIYEEFY 322 (361)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~ 322 (361)
|+.+-||..+...+|-.++.+.
T Consensus 132 l~vlPiLt~viQ~LP~sFeKL~ 153 (228)
T PRK06800 132 LDVLPILTGIVQTLPTSFEKLN 153 (228)
T ss_pred HHHHHHHHHHHHHcchhHHHhh
Confidence 5666677777667777777664
No 120
>cd07621 BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 5 and 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Members of this subfamily include SNX5, SNX6, the mammalian SNX32, and similar proteins. SNX5 and SNX6 may be components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. The function of SNX32 is still unknown. BAR domain
Probab=23.44 E-value=6.3e+02 Score=23.83 Aligned_cols=27 Identities=15% Similarity=0.272 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5492 217 VFDKCQEMETTRLQFFKDSLFSIHKCL 243 (361)
Q Consensus 217 ~~d~~Q~lEe~RI~flK~~L~~y~~~l 243 (361)
+=..+..++..|+.-||..|..|+...
T Consensus 174 ~k~El~rF~~~Rv~~fk~~lve~aE~~ 200 (219)
T cd07621 174 AKQELLDFKTRRVAAFRKNLVELAELE 200 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788999999999999999997544
No 121
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=23.07 E-value=6.5e+02 Score=23.81 Aligned_cols=61 Identities=23% Similarity=0.275 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5492 131 KPWCKLLTKVNKTKNDYHVACKAERSASNQERNASADSSLSMDQLKKMQDRVQKAKEEVQKAKEKYELALQ 201 (361)
Q Consensus 131 K~~~~~~~kl~KaKK~Y~~~Ckee~~a~~~e~~a~~d~~~s~ke~eKl~~K~~K~~~~~~kak~eY~~~l~ 201 (361)
.++.....++...+|.|..-....... . ..+-.+++|...+.++.-++++.|+..|..+..
T Consensus 94 ~~l~~l~~~~~~~rK~~~~~~~kl~~e--l--------~~~~~el~k~Kk~Y~~~~~e~e~Ar~k~e~a~~ 154 (237)
T cd07657 94 DKLTLLIKDKRKAKKAYQEERQQIDEQ--Y--------KKLTDEVEKLKSEYQKLLEDYKAAKSKFEEAVV 154 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--H--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455566666666665433321100 0 011244455555555555555555555544444
No 122
>cd07646 I-BAR_IMD_IRSp53 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Insulin Receptor tyrosine kinase Substrate p53. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. IRSp53 (Insulin Receptor tyrosine kinase Substrate p53) is also known as BAIAP2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2). It is a scaffolding protein that takes part in many signaling pathways including Cdc42-induced filopodia formation, Rac-mediated lamellipodia extension, and spine morphogenesis. IRSp53 exists as multiple splicing variants that differ mainly at the C-termini. One variant (T-form) is expressed exclusively in human breast cancer cells. The gene encoding IRSp53 is a putative susceptibility gene for Gilles de la Tourette syndrome. IRSp53 contains an N-terminal IMD, a CRIB (Cdc42 and Rac interactive binding motif), an SH3 domain, and a WASP
Probab=21.90 E-value=7.1e+02 Score=23.85 Aligned_cols=52 Identities=12% Similarity=0.091 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5492 192 AKEKYELALQELNSYNPKYMEDMSVVFDKCQEMETTRLQFFKDSLFSIHKCL 243 (361)
Q Consensus 192 ak~eY~~~l~~ln~~r~~yeeeM~~~~d~~Q~lEe~RI~flK~~L~~y~~~l 243 (361)
-...+.+.|+.++.-+.+.+.=....|..--.-|+.|..||-+--..+++++
T Consensus 153 y~~ke~q~~~~~~~~q~ele~f~~~~~k~Al~EErRRycflvdk~C~~~~~~ 204 (232)
T cd07646 153 YSDKELQYIEAISNKQGELENYVSDGYKTALTEERRRYCFLVEKQCAVAKNS 204 (232)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556677777777777777777888888889999999988776666655
No 123
>PF02520 DUF148: Domain of unknown function DUF148; InterPro: IPR003677 This entry represents the domain DUF148, which has no known function.
Probab=21.83 E-value=4.5e+02 Score=21.51 Aligned_cols=32 Identities=22% Similarity=0.286 Sum_probs=27.8
Q ss_pred hhhhhhhHHhHHHHhhhcCCCchhhHHHHhhh
Q psy5492 251 VLHIKERKEMEDAFKKAQKPWCKTVLHIKERK 282 (361)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~k~~~ 282 (361)
+....++...|+.+..+..|-++|-.||.+..
T Consensus 78 ~lT~~q~~~~I~~l~~~~~~e~~~l~~i~~~~ 109 (113)
T PF02520_consen 78 SLTRQQQQEAIDALRKQYPEEVDTLFFIRKEI 109 (113)
T ss_pred ccCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 45578899999999999999999999998743
No 124
>KOG1962|consensus
Probab=21.72 E-value=4.9e+02 Score=24.63 Aligned_cols=42 Identities=17% Similarity=0.316 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q psy5492 172 MDQLKKMQDRVQKAKEEVQKAKEKYELALQELNSYNPKYMED 213 (361)
Q Consensus 172 ~ke~eKl~~K~~K~~~~~~kak~eY~~~l~~ln~~r~~yeee 213 (361)
..++.|++.++++...+.+++++++.....+.....++|..-
T Consensus 157 ~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrL 198 (216)
T KOG1962|consen 157 KADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRL 198 (216)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHH
Confidence 345667777777777777777777776666666666666543
No 125
>PRK14755 transcriptional regulatory protein PufK; Provisional
Probab=21.04 E-value=44 Score=20.49 Aligned_cols=7 Identities=57% Similarity=1.255 Sum_probs=4.8
Q ss_pred CCCCccc
Q psy5492 1 MLPFRNR 7 (361)
Q Consensus 1 ~~~~~~~ 7 (361)
|+|+||-
T Consensus 1 mvpyrnp 7 (26)
T PRK14755 1 MVPYRNP 7 (26)
T ss_pred CCCccCc
Confidence 6777773
No 126
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=21.01 E-value=6.8e+02 Score=24.42 Aligned_cols=57 Identities=19% Similarity=0.451 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5492 175 LKKMQDRVQKAKEEVQKAKEKYELALQELNSYNPKYMEDMSVVFDKCQEMETTRLQFFKDS 235 (361)
Q Consensus 175 ~eKl~~K~~K~~~~~~kak~eY~~~l~~ln~~r~~yeeeM~~~~d~~Q~lEe~RI~flK~~ 235 (361)
..-|..|+++...+.+.++.. +..+..+||-|+++-..+-..+|.+=+.=+..+++.
T Consensus 192 e~~Le~KIekkk~ELER~qKR----L~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~kfRNl 248 (267)
T PF10234_consen 192 EANLEAKIEKKKQELERNQKR----LQSLQSVRPAFMDEYEKLEEELQKLYEIYVEKFRNL 248 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 345678888888888877655 578889999999999888888888877777666643
No 127
>PRK14162 heat shock protein GrpE; Provisional
Probab=20.90 E-value=6.7e+02 Score=23.20 Aligned_cols=64 Identities=13% Similarity=0.266 Sum_probs=46.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5492 170 LSMDQLKKMQDRVQKAKEEVQKAKEKYELALQELNSYNPKYMEDMSVVFDKCQEMETTRLQFFKDSLFSI 239 (361)
Q Consensus 170 ~s~ke~eKl~~K~~K~~~~~~kak~eY~~~l~~ln~~r~~yeeeM~~~~d~~Q~lEe~RI~flK~~L~~y 239 (361)
-++.++..++.++..++.++...++.|.....++..++.+...+...+-.. ..-.|++++|..+
T Consensus 36 ~~~~e~~~l~~~l~~l~~e~~elkd~~lR~~AEfeN~rkR~~kE~e~~~~~------a~~~~~~~LLpV~ 99 (194)
T PRK14162 36 EKQNPVEDLEKEIADLKAKNKDLEDKYLRSQAEIQNMQNRYAKERAQLIKY------ESQSLAKDVLPAM 99 (194)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhhHH
Confidence 345677778888888888899999999999999999998888776665443 2334555555444
No 128
>PRK14144 heat shock protein GrpE; Provisional
Probab=20.22 E-value=5e+02 Score=24.23 Aligned_cols=67 Identities=13% Similarity=0.182 Sum_probs=49.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5492 167 DSSLSMDQLKKMQDRVQKAKEEVQKAKEKYELALQELNSYNPKYMEDMSVVFDKCQEMETTRLQFFKDSLFSI 239 (361)
Q Consensus 167 d~~~s~ke~eKl~~K~~K~~~~~~kak~eY~~~l~~ln~~r~~yeeeM~~~~d~~Q~lEe~RI~flK~~L~~y 239 (361)
.+++...+...+..++..++.++...++.|.....++..+|.+...+...+-+ ...-.|++++|..+
T Consensus 39 ~~~~~~~~~~~l~~~i~~le~e~~elkdk~lR~~AefeN~RKR~~kE~e~~~~------~a~~~~~~~LLpV~ 105 (199)
T PRK14144 39 EPALGHPSYTALEEQLTLAEQKAHENWEKSVRALAELENVRRRMEREVANAHK------YGVEKLISALLPVV 105 (199)
T ss_pred cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHhhHH
Confidence 34566677788888888999999999999999999999998888877665543 23344555555544
Done!