RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5492
(361 letters)
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons
protein 2; helix bundle, coiled-coil, endocytosis; 2.70A
{Homo sapiens}
Length = 350
Score = 165 bits (418), Expect = 4e-48
Identities = 112/271 (41%), Positives = 161/271 (59%), Gaps = 39/271 (14%)
Query: 26 GGMSHHSDENMLI-ASSDSFWEPGNYKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKS 84
GMS D+++ + SSDSFWE GNYKRT KRI+DG++LC+DL+ + ERA IEKAYA+
Sbjct: 6 SGMSVTYDDSVGVEVSSDSFWEVGNYKRTVKRIDDGHRLCSDLMNCLHERARIEKAYAQQ 65
Query: 85 LKGWNKKWNELIEKVMR-------------------------------------TCWQKD 107
L W ++W +L+EK + WQK+
Sbjct: 66 LTEWARRWRQLVEKGPQYGTVEKAWMAFMSEAERVSELHLEVKASLMNDDFEKIKNWQKE 125
Query: 108 TYHKTVLH-IKERKEMEDAFKKAQKPWCKLLTKVNKTKNDYHVACKAERSASNQERNASA 166
+HK ++ KE KE ED F+KAQKPW K L +V K +H ACK E+ A ++E N+ A
Sbjct: 126 AFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREANSKA 185
Query: 167 DSSLSMDQLKKMQDRVQKAKEEVQKAKEKYELALQELNSYNPKYMEDMSVVFDKCQEMET 226
D SL+ +QLKK+QD+++K K++V K KEKYE +L+EL+ P+YME+M VF++CQ+ E
Sbjct: 186 DPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQYMENMEQVFEQCQQFEE 245
Query: 227 TRLQFFKDSLFSIHKCLNISQDPTVLHIKER 257
RL+FF++ L + K L++S I
Sbjct: 246 KRLRFFREVLLEVQKHLDLSNVAGYKAIYHD 276
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative
splicing, coiled coil, cytoplasmic vesicle, endocytosis,
phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Length = 486
Score = 166 bits (420), Expect = 2e-47
Identities = 115/374 (30%), Positives = 179/374 (47%), Gaps = 40/374 (10%)
Query: 28 MSHHSDENMLI-ASSDSFWEPGNYKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLK 86
MS D+++ + SSDSFWE GNYKRT KRI+DG++LC+DL+ + ERA IEKAYA+ L
Sbjct: 1 MSVTYDDSVGVEVSSDSFWEVGNYKRTVKRIDDGHRLCSDLMNCLHERARIEKAYAQQLT 60
Query: 87 GWNKKWNELIEKVMRTC-------------------------------------WQKDTY 109
W ++W +L+EK + WQK+ +
Sbjct: 61 EWARRWRQLVEKGPQYGTVEKAWMAFMSEAERVSELHLEVKASLMNDDFEKIKNWQKEAF 120
Query: 110 HKTVLH-IKERKEMEDAFKKAQKPWCKLLTKVNKTKNDYHVACKAERSASNQERNASADS 168
HK ++ KE KE ED F+KAQKPW K L +V K +H ACK E+ A ++E N+ AD
Sbjct: 121 HKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREANSKADP 180
Query: 169 SLSMDQLKKMQDRVQKAKEEVQKAKEKYELALQELNSYNPKYMEDMSVVFDKCQEMETTR 228
SL+ +QLKK+QD+++K K++V K KEKYE +L+EL+ P+YME+M VF++CQ+ E R
Sbjct: 181 SLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQYMENMEQVFEQCQQFEEKR 240
Query: 229 LQFFKDSLFSIHKCLNISQDPTVLHIKER-KEMEDAFKKAQKPWCKTVLHIKERKEMEDA 287
L+FF++ L + K L++S I ++ A + H
Sbjct: 241 LRFFREVLLEVQKHLDLSNVAGYKAIYHDLEQSIRAADAVEDLRWFRANHGPGMAMNWPQ 300
Query: 288 FKKAQKPWCIMQHLKLICILKCCYSRLPQIYEEFYHTINNADHEKDLKWWSNNHGVNMAM 347
F++ + + + ++ + +
Sbjct: 301 FEEWSADLNRTLSRREKKKATDGVTLTGINQTGDQSLPSKPSSTLNVPSNPAQSAQSQSS 360
Query: 348 NWPQFEVRLSYHSP 361
P + + +
Sbjct: 361 YNPFEDEDDTGSTV 374
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons
protein 2; helix bundle, coiled-coil, endocytosis; 2.00A
{Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A
3q84_A
Length = 312
Score = 161 bits (408), Expect = 3e-47
Identities = 112/271 (41%), Positives = 161/271 (59%), Gaps = 39/271 (14%)
Query: 26 GGMSHHSDENMLI-ASSDSFWEPGNYKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKS 84
GMS D+++ + SSDSFWE GNYKRT KRI+DG++LC+DL+ + ERA IEKAYA+
Sbjct: 6 SGMSVTYDDSVGVEVSSDSFWEVGNYKRTVKRIDDGHRLCSDLMNCLHERARIEKAYAQQ 65
Query: 85 LKGWNKKWNELIEKVMR-------------------------------------TCWQKD 107
L W ++W +L+EK + WQK+
Sbjct: 66 LTEWARRWRQLVEKGPQYGTVEKAWMAFMSEAERVSELHLEVKASLMNDDFEKIKNWQKE 125
Query: 108 TYHKTVL-HIKERKEMEDAFKKAQKPWCKLLTKVNKTKNDYHVACKAERSASNQERNASA 166
+HK ++ KE KE ED F+KAQKPW K L +V K +H ACK E+ A ++E N+ A
Sbjct: 126 AFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREANSKA 185
Query: 167 DSSLSMDQLKKMQDRVQKAKEEVQKAKEKYELALQELNSYNPKYMEDMSVVFDKCQEMET 226
D SL+ +QLKK+QD+++K K++V K KEKYE +L+EL+ P+YME+M VF++CQ+ E
Sbjct: 186 DPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQYMENMEQVFEQCQQFEE 245
Query: 227 TRLQFFKDSLFSIHKCLNISQDPTVLHIKER 257
RL+FF++ L + K L++S I
Sbjct: 246 KRLRFFREVLLEVQKHLDLSNVAGYKAIYHD 276
>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse,
BAR domain, endocytosis; 2.60A {Mus musculus} PDB:
3qe6_A
Length = 320
Score = 153 bits (387), Expect = 5e-44
Identities = 100/264 (37%), Positives = 142/264 (53%), Gaps = 38/264 (14%)
Query: 32 SDENMLIASSDSFWEPGNYKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNKK 91
++ SFWE GNY+RT +R+EDG++LC DL++ QERA IEKAYA+ L W +K
Sbjct: 4 EEDAGGEVLGGSFWEAGNYRRTVQRVEDGHRLCGDLVSCFQERARIEKAYAQQLADWARK 63
Query: 92 WNELIEKVMR-------------------------------------TCWQKDTYHKTVL 114
W +EK + WQ+ +H+ VL
Sbjct: 64 WRGAVEKGPQYGTLEKAWHAFFTAAERLSELHLEVREKLHGPDSERVRTWQRGAFHRPVL 123
Query: 115 -HIKERKEMEDAFKKAQKPWCKLLTKVNKTKNDYHVACKAERSASNQERNASADSSLSMD 173
+ + ED F+KAQKPW K L +V +K YH A K E++A +E +A ADSS+S +
Sbjct: 124 GGFRASRAAEDGFRKAQKPWLKRLKEVEASKKSYHTARKDEKTAQTRESHAKADSSMSQE 183
Query: 174 QLKKMQDRVQKAKEEVQKAKEKYELALQELNSYNPKYMEDMSVVFDKCQEMETTRLQFFK 233
QL+K+Q+RV + +E +K K +YE L ELN Y P+YMEDM F+ CQ E RL FFK
Sbjct: 184 QLRKLQERVGRCTKEAEKMKTQYEQTLAELNRYTPRYMEDMEQAFESCQAAERQRLLFFK 243
Query: 234 DSLFSIHKCLNISQDPTVLHIKER 257
D L ++H+ L++S +
Sbjct: 244 DVLLTLHQHLDLSSSDKFHELHRD 267
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N
protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis;
2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Length = 337
Score = 151 bits (383), Expect = 3e-43
Identities = 106/264 (40%), Positives = 153/264 (57%), Gaps = 38/264 (14%)
Query: 32 SDENMLIASSDSFWEPGNYKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNKK 91
S + +DSFWE GNYKRT KRI+DG++LCNDL++ +QERA IEKAYA+ L W K+
Sbjct: 4 SYDEASEEITDSFWEVGNYKRTVKRIDDGHRLCNDLMSCVQERAKIEKAYAQQLTDWAKR 63
Query: 92 WNELIEKVMR-------------------------------------TCWQKDTYHKTVL 114
W +LIEK + WQKD YHK ++
Sbjct: 64 WRQLIEKGPQYGSLERAWGAMMTEADKVSELHQEVKNSLLNEDLEKVKNWQKDAYHKQIM 123
Query: 115 H-IKERKEMEDAFKKAQKPWCKLLTKVNKTKNDYHVACKAERSASNQERNASADSSLSMD 173
KE KE ED F+KAQKPW K + ++ K YH+ACK ER A +E N+ + S++ +
Sbjct: 124 GGFKETKEAEDGFRKAQKPWAKKMKELEAAKKAYHLACKEERLAMTREMNSKTEQSVTPE 183
Query: 174 QLKKMQDRVQKAKEEVQKAKEKYELALQELNSYNPKYMEDMSVVFDKCQEMETTRLQFFK 233
Q KK+ D+V K +++VQK +EKYE L+++ P+YME M VF++CQ+ E RL F K
Sbjct: 184 QQKKLVDKVDKCRQDVQKTQEKYEKVLEDVGKTTPQYMEGMEQVFEQCQQFEEKRLVFLK 243
Query: 234 DSLFSIHKCLNISQDPTVLHIKER 257
+ L I + LN++++ + +H+
Sbjct: 244 EVLLDIKRHLNLAENSSYMHVYRE 267
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A
{Drosophila melanogaster}
Length = 290
Score = 148 bits (375), Expect = 2e-42
Identities = 147/254 (57%), Positives = 174/254 (68%), Gaps = 37/254 (14%)
Query: 41 SDSFWEPGNYKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNKKWNELIEK-- 98
SDSFWEPGNYKRTTKRIEDGYKLCNDL LIQERADIEK YAKSL+ W+KKW ELIEK
Sbjct: 1 SDSFWEPGNYKRTTKRIEDGYKLCNDLQQLIQERADIEKGYAKSLRTWSKKWGELIEKGP 60
Query: 99 ---VMRTCW--------------------------------QKDTYHKTVLHIKERKEME 123
W QK+ YH T++ IKERK++E
Sbjct: 61 EYGTTEAAWKGVLTESERISDVHMKIKDNLCNDVNSQIKTWQKENYHHTLMQIKERKDLE 120
Query: 124 DAFKKAQKPWCKLLTKVNKTKNDYHVACKAERSASNQERNASADSSLSMDQLKKMQDRVQ 183
D FKKAQKPW KLL KV K K DYH ACK ERSA+NQERNA+ADSSLS DQ+KKM DRVQ
Sbjct: 121 DLFKKAQKPWAKLLAKVEKAKADYHSACKTERSATNQERNANADSSLSPDQVKKMHDRVQ 180
Query: 184 KAKEEVQKAKEKYELALQELNSYNPKYMEDMSVVFDKCQEMETTRLQFFKDSLFSIHKCL 243
K K++VQK +EKYE A+ E+ YN Y+EDM+ VF+KCQ E TRLQFFK+ LF++H CL
Sbjct: 181 KTKDQVQKCREKYEQAIAEITKYNSVYIEDMTSVFEKCQTFEKTRLQFFKEILFNVHSCL 240
Query: 244 NISQDPTVLHIKER 257
++++ ++ I E
Sbjct: 241 DLTKVQSLPQIYEE 254
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics,
NPPSFA, national project on structural and functional
analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Length = 301
Score = 119 bits (299), Expect = 2e-31
Identities = 37/228 (16%), Positives = 77/228 (33%), Gaps = 34/228 (14%)
Query: 43 SFWEPGNYKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNKKWNELIEKV--- 99
S G ++ + + G L + + ++ER ++E+AYAK L+ KK+
Sbjct: 2 SSGSSGQFEVLERHTQWGLDLLDRYVKFVKERTEVEQAYAKQLRSLVKKYLPKRPAKDDP 61
Query: 100 -----MRTCWQ-------------------------KDTYHKTVLHIKERKEMEDAFKKA 129
+ + + + +ERK ++A
Sbjct: 62 ESKFSQQQSFVQILQEVNDFAGQRELVAENLSVRVCLELTKYSQEMKQERKMHFQEGRRA 121
Query: 130 QKPWCKLLTKVNKTKNDYHVACKAERSASNQERNASADSSLSMDQLKKMQDRVQKAKEEV 189
Q+ ++ +K + C+ A+ D + + ++K + +
Sbjct: 122 QQQLENGFKQLENSKRKFERDCREAEKAAQTAERLDQDINATKADVEKAKQQAHLRSHMA 181
Query: 190 QKAKEKYELALQELNSYNPK-YMEDMSVVFDKCQEMETTRLQFFKDSL 236
+++K +Y LQ N Y M +FDK Q+M+ R
Sbjct: 182 EESKNEYAAQLQRFNRDQAHFYFSQMPQIFDKLQDMDERRATRLGAGY 229
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA,
national project on structural and functional analyses;
2.61A {Homo sapiens} SCOP: a.238.1.4
Length = 305
Score = 114 bits (287), Expect = 1e-29
Identities = 42/230 (18%), Positives = 81/230 (35%), Gaps = 36/230 (15%)
Query: 41 SDSFWEPGNYKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNKKWNELIEKV- 99
W+ + K + G + I ++ER +IE +YAK L+ +KK+
Sbjct: 9 GTELWD--QFDNLEKHTQWGIDILEKYIKFVKERTEIELSYAKQLRNLSKKYQPKKNSKE 66
Query: 100 -------MRTCWQK----------------DTYHKTVL---------HIKERKEMEDAFK 127
+ + ++ +ERK +
Sbjct: 67 EEEYKYTSCKAFISNLNEMNDYAGQHEVISENMASQIIVDLARYVQELKQERKSNFHDGR 126
Query: 128 KAQKPWCKLLTKVNKTKNDYHVACKAERSASNQERNASADSSLSMDQLKKMQDRVQKAKE 187
KAQ+ ++ +K + CK A AD +++ ++K + + Q +
Sbjct: 127 KAQQHIETCWKQLESSKRRFERDCKEADRAQQYFEKMDADINVTKADVEKARQQAQIRHQ 186
Query: 188 EVQKAKEKYELALQELNSYNPK-YMEDMSVVFDKCQEMETTRLQFFKDSL 236
+ +K Y LQ+ N + Y + +F K QEME R+ +S+
Sbjct: 187 MAEDSKADYSSILQKFNHEQHEYYHTHIPNIFQKIQEMEERRIVRMGESM 236
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural
genomics consortium, BCR, CR associated substrate,
transferase; 2.18A {Homo sapiens}
Length = 406
Score = 102 bits (254), Expect = 2e-24
Identities = 30/241 (12%), Positives = 78/241 (32%), Gaps = 38/241 (15%)
Query: 41 SDSFWEPGNYKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNKKW------NE 94
S P + + E +L + + +R ++ YA L + +
Sbjct: 5 SSELCSPQGHGVLQQMQEAELRLLEGMRKWMAQRVKSDREYAGLLHHMSLQDSGGQSRAI 64
Query: 95 LIEKVMRTCWQK----------------DTYHKTVL---------HIKERKEMEDAFKKA 129
+ + W + + + L + RK + +++
Sbjct: 65 SPDSPISQSWAEITSQTEGLSRLLRQHAEDLNSGPLSKLSLLIRERQQLRKTYSEQWQQL 124
Query: 130 QKPWCKLLTK-VNKTKNDYHVACKAERSASNQERNASADSSLSMDQLKKMQDRVQKAKEE 188
Q+ K ++ + K K+ Y + A + + AS D K +D+ ++ +
Sbjct: 125 QQELTKTHSQDIEKLKSQYRALARDSAQAKRKYQEASKDK-----DRDKAKDKYVRSLWK 179
Query: 189 VQKAKEKYELALQELNSYNPKY-MEDMSVVFDKCQEMETTRLQFFKDSLFSIHKCLNISQ 247
+ +Y L ++ ++ + + + Q++ K+ L + ++ Q
Sbjct: 180 LFAHHNRYVLGVRAAQLHHQHHHQLLLPGLLRSLQDLHEEMACILKEILQEYLEISSLVQ 239
Query: 248 D 248
D
Sbjct: 240 D 240
>3g9g_A Suppressor of yeast profilin deletion; SYP1, BAR domain, FCH,
adaptor, endocytosis, phosphoprotein; 2.40A
{Saccharomyces cerevisiae}
Length = 287
Score = 90.2 bits (223), Expect = 8e-21
Identities = 21/182 (11%), Positives = 66/182 (36%), Gaps = 5/182 (2%)
Query: 55 KRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNKKWNELIEKVMRTCWQKDTYHKTVL 114
R+ L D L +E A++++ YA+ L+ + ++ + + + +
Sbjct: 50 IRLSQVKLLNKDFYLLFKELANLKRNYAQQLRKIIAENEDITKILNAQMIESNVLTPQ-- 107
Query: 115 HIKERKEMEDAFKKAQKPWCKLLTKVNKTKNDYHVACKAERSASNQERNASADSSLSMDQ 174
+ ++ + + W ++ ++ +E S +++ S +
Sbjct: 108 --EMSAFRFNSLGELRNVWDTVIEELKSDLKSSTEYYNTLDQQVVRELKESVENNTSWRE 165
Query: 175 LKKMQDRVQKAKEEVQKAKEKYELALQELNSYNPKYMEDMSVVFDKCQEMETTRLQFFKD 234
K + ++ K ++ + E L ++ + +F+ + ++ RL K+
Sbjct: 166 SKDLHSKLSKNAASIEHYSKNNE-NSSHLEEARRQWDQQSPYLFELFETIDYNRLDTLKN 224
Query: 235 SL 236
+
Sbjct: 225 CM 226
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC
domain, vesicle trafficking, membrane curvature,
endocytosis, exocytosis, F-BAR domain; 2.30A {Homo
sapiens}
Length = 276
Score = 81.3 bits (200), Expect = 8e-18
Identities = 49/320 (15%), Positives = 108/320 (33%), Gaps = 62/320 (19%)
Query: 41 SDSFWEPGN--YKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNKKWNELIEK 98
++FW N + ++ G +L ++ERA IE+AY++S+ K + +
Sbjct: 9 VENFWGEKNSGFDVLYHNMKHGQISTKELADFVRERATIEEAYSRSMTKLAKSASNYSQL 68
Query: 99 V-MRTCWQK---DTYHKTVLHIKERKEMEDAFKKAQKPWCKLLTKVNKTKNDYHVACKAE 154
W T H+ +++++ K+ QK + + KTK +
Sbjct: 69 GTFAPVWDVFKTSTEKLANCHLDLVRKLQELIKEVQKYGEEQVKSHKKTKEE-------- 120
Query: 155 RSASNQERNASADSSLSMDQLKKMQDRVQKAKEEVQKAKEKYELALQELNSYNPKYMEDM 214
+ + +Q + +QK+KE Y E +
Sbjct: 121 -----------------VAGTLEAVQTIQSITQALQKSKENYNAKCVEQERLKKEGATQR 163
Query: 215 SVVFDKCQEMETTRLQFFKDSLFSIHKCLNISQDPTVLHIKERKEMEDAFKKAQKPWCKT 274
+ + + D+ + +++ ++M + +K Q
Sbjct: 164 EIEKAAVKSKKA------TDTYKLYVEKYALAKA------DFEQKMTETAQKFQDIEETH 211
Query: 275 VLHIKERKEMEDAFKKAQKPWCIMQHLKLICILKCCYSRLPQIYEEFYHTINNADHEKDL 334
++HIKE L +K + ++ Q++EEF + + N E +
Sbjct: 212 LIHIKE------------------IIGSLSNAIKEIHLQIGQVHEEFINNMANTTVESLI 253
Query: 335 KWWSNNHGVNMAM-NWPQFE 353
+ ++ + G +FE
Sbjct: 254 QKFAESKGTGKERPGLIEFE 273
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC,
protein binding; 2.40A {Homo sapiens}
Length = 279
Score = 52.9 bits (126), Expect = 5e-08
Identities = 32/246 (13%), Positives = 77/246 (31%), Gaps = 31/246 (12%)
Query: 55 KRIEDGYKLCNDLIALIQERADIEKAYAKSLK----------------GWNKKWNELIEK 98
+ + + +L+A ++RA E +AKS + +E
Sbjct: 21 EYAKTWSRYAKELLAWTEKRASYELEFAKSTMKIAEAGKVSIQQQSHMPLQYIYTLFLEH 80
Query: 99 VMRTCWQKDTYHKTVL-------------HIKERKEMEDAFKKAQKPWCKLLTKVNKTKN 145
+ K RKE ++ + K QK + + + + +
Sbjct: 81 DLSLGTLAMETVAQQKRDYYQPLAAKRTEIEKWRKEFKEQWMKEQKRMNEAVQALRRAQL 140
Query: 146 DYHVACKAERSASNQERNASADSSLSMD--QLKKMQDRVQKAKEEVQKAKEKYELALQEL 203
Y + R+ S SA + Q ++ + ++A+ + Q+A+ Y+ ++E
Sbjct: 141 QYVQRSEDLRARSQGSPEDSAPQASPGPSKQQERRRRSREEAQAKAQEAEALYQACVREA 200
Query: 204 NSYNPKYMEDMSVVFDKCQEMETTRLQFFKDSLFSIHKCLNISQDPTVLHIKERKEMEDA 263
N+ + +++ + + S+ + E
Sbjct: 201 NARQQDLEIAKQRIVSHVRKLVFQGDEVLRRVTLSLFGLRGAQAERGPRAFAALAECCAP 260
Query: 264 FKKAQK 269
F+ Q+
Sbjct: 261 FEPGQR 266
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 52.5 bits (125), Expect = 1e-07
Identities = 51/341 (14%), Positives = 101/341 (29%), Gaps = 71/341 (20%)
Query: 44 FW-EPGNYKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNKKWNELIEKVMRT 102
FW N +E KL + R+D + + L+
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL------ 238
Query: 103 CWQKDTYHKTVL----HIKERKEMEDAFKKAQKPWCK-LLTKVNKTKNDYHVACKAERSA 157
K ++ L +++ K +AF + CK LLT K D+ A +
Sbjct: 239 ---KSKPYENCLLVLLNVQNAKAW-NAFNLS----CKILLTTRFKQVTDFLSAATTTHIS 290
Query: 158 SNQERNA-SADSSLSMDQLKKMQDRVQKAKEEVQK----------AKEKYELA-LQELNS 205
+ + D S+ LK + R Q EV + LA
Sbjct: 291 LDHHSMTLTPDEVKSL-LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH 349
Query: 206 YNPKYMEDMSVVFDKCQEMETTRLQFFKDSLFSIHKCLNISQDPTVLHI----KERKEME 261
N + + E R F + S+F +I +L + + ++
Sbjct: 350 VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP--PSAHIP--TILLSLIWFDVIKSDVM 405
Query: 262 DAFKK------AQKPWCKTV-----LHIKERKEMEDAFKKAQKPWCIMQHLKLICILKCC 310
K +K ++ ++++ + ++E+ + + I+ H +
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRS---IVDHYNIPKTF-DS 461
Query: 311 YSRLPQ-----IYEEF-YHTINNADHEK---------DLKW 336
+P Y +H N E+ D ++
Sbjct: 462 DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRF 502
Score = 43.7 bits (102), Expect = 8e-05
Identities = 39/291 (13%), Positives = 85/291 (29%), Gaps = 91/291 (31%)
Query: 37 LIASSDS-------FWEPGNYKRTTKRIE--------DGYKLCNDLIALIQERADIEKAY 81
+IA S W+ N + T IE Y+ D +++ A I
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL 391
Query: 82 AKSLKGWNKKWNELIEKVMRTC---------WQKDTYHKTVLHIKERKEMEDAFKKAQKP 132
+ W + V+ ++ T ++++ + ++E+ + +
Sbjct: 392 LSLI--WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRS- 448
Query: 133 WCKLLTKVNKTK----ND---------------YHVACKAERSASNQE------------ 161
++ N K +D +H+ E
Sbjct: 449 ---IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLK-NIEHPERMTLFRMVFLDFRFLE 504
Query: 162 ---RNASADSSLSMDQLKKMQDRVQKAKEEVQKAKEKYELALQELNSYNPKYMEDMSVVF 218
R+ S + S L +Q ++ K + KYE + + + PK E++
Sbjct: 505 QKIRHDSTAWNASGSILNTLQQ-LKFYKPYICDNDPKYERLVNAILDFLPKIEENL---- 559
Query: 219 DKCQEMETTRLQFFKDSLFSIHKCLNISQDPTVLHIKERKEMEDAFKKAQK 269
K ++ + L ++ E+A K+ Q+
Sbjct: 560 -------------------ICSKYTDLLR--IALMAEDEAIFEEAHKQVQR 589
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 35.6 bits (82), Expect = 0.028
Identities = 31/208 (14%), Positives = 71/208 (34%), Gaps = 25/208 (12%)
Query: 48 GNYKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNKKWNELIEKVMRTCWQKD 107
K ++ + N L +Q ++ + K EL E + + +
Sbjct: 878 AELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIE 937
Query: 108 TYHKTVLHIKERK---------------EMEDAFKKAQKPWCKLLTKVNKTKNDYHVACK 152
+ ++ K E E A +K Q K+ K ++D +
Sbjct: 938 EEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMED 997
Query: 153 A-----ERSASNQERNASADSSLS-----MDQLKKMQDRVQKAKEEVQKAKEKYELALQE 202
+ +ER + ++L+ L K++++ + E++ +K E + QE
Sbjct: 998 QNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQE 1057
Query: 203 LNSYNPKYMEDMSVVFDKCQEMETTRLQ 230
L K + S + ++ E++ +
Sbjct: 1058 LEKIKRKLEGESSDLHEQIAELQAQIAE 1085
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 33.6 bits (76), Expect = 0.051
Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 22/74 (29%)
Query: 55 KRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNKKWNELIEKVMRTCWQKDTYHKTVL 114
KR+++ D + + E+ EKA K L+ WN++ +E +EK
Sbjct: 96 KRLQE-----LDAASKVMEQEWREKA-KKDLEEWNQRQSEQVEK---------------- 133
Query: 115 HIKERKEMEDAFKK 128
+ + + AF +
Sbjct: 134 NKINNRIADKAFYQ 147
Score = 30.5 bits (68), Expect = 0.65
Identities = 14/87 (16%), Positives = 35/87 (40%), Gaps = 17/87 (19%)
Query: 180 DRVQKAKEEVQKAKEKYELALQELNSYNPKYMEDMSVVFDKCQEMETTRLQFFKDSLFSI 239
DR+ + E ++K +E+ LQEL++ + ++ K ++E ++ + +
Sbjct: 78 DRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKK--DLE----EWNQRQSEQV 131
Query: 240 HKCLNISQDPTVLHIKERKEMEDAFKK 266
K + + + AF +
Sbjct: 132 EK-----------NKINNRIADKAFYQ 147
Score = 27.8 bits (61), Expect = 4.0
Identities = 10/53 (18%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
Query: 153 AERSASNQERNASADSSLSMDQLKKMQDRVQKAKEEVQKAKEKYELALQELNS 205
A QE A L + ++ ++V+K K + A + + Q+ ++
Sbjct: 103 AASKVMEQEWREKAKKDLE-EWNQRQSEQVEKNKINNRIADKAF---YQQPDA 151
Score = 27.8 bits (61), Expect = 4.7
Identities = 14/97 (14%), Positives = 35/97 (36%), Gaps = 19/97 (19%)
Query: 74 RADIEKAYAKSLKGWNKKWNELIEKVMRTCWQKDTYHKTVLHIKERKEMEDAFKKAQKPW 133
+AD +S++ W ++ + +++ D K +E + KK + W
Sbjct: 76 QADRLTQEPESIRKWREEQRKRLQE-------LDAASK-----VMEQEWREKAKKDLEEW 123
Query: 134 CKLLTKVNKTKNDYHVACKAERSASNQERNASADSSL 170
+ ++ KN K +++ D+ +
Sbjct: 124 NQRQSE-QVEKN------KINNRIADKAFYQQPDADI 153
>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT;
1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*
Length = 314
Score = 31.8 bits (73), Expect = 0.28
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 162 RNASADSSLSMDQLKKMQDRVQKAKEEVQKAKEK 195
+ DQL + R+Q+A EV KAK
Sbjct: 186 SQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAG 219
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma
factor, transcription regulation; 2.60A {Escherichia
coli} SCOP: a.177.1.1
Length = 339
Score = 31.8 bits (72), Expect = 0.36
Identities = 17/164 (10%), Positives = 55/164 (33%), Gaps = 19/164 (11%)
Query: 51 KRTTKRIEDGYKLCNDLIALIQERADIEKAYAK----------SLKGWNKKWNELIEKVM 100
+ ++ + I+ + + + K+++ L+ +
Sbjct: 106 ELAREKFAELRAQYVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMR 165
Query: 101 RTCWQKDTYHKTVLHIKE------RKEMEDAFKK--AQKPWCKLLTKVNKTKNDYHVACK 152
+ T + ++ + +K F W +NK ++
Sbjct: 166 VMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVS 225
Query: 153 AE-RSASNQERNASADSSLSMDQLKKMQDRVQKAKEEVQKAKEK 195
E A + + ++ L+++Q+K + R+ + + ++AK++
Sbjct: 226 EEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKE 269
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 30.8 bits (70), Expect = 0.76
Identities = 20/153 (13%), Positives = 55/153 (35%), Gaps = 12/153 (7%)
Query: 51 KRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNKKWNELIEKVMRTCWQKDTYH 110
+ + + L N ++ L ++ + K ++ L+EK+ T
Sbjct: 914 RSVERYKKLHIGLENKIMQLQRKIDEQNK-----------EYKSLLEKMNNLEITYSTET 962
Query: 111 KTV-LHIKERKEMEDAFKKAQKPWCKLLTKVNKTKNDYHVACKAERSASNQERNASADSS 169
+ + ++ + E+ K A L ++ K + + H +++ ++
Sbjct: 963 EKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETE 1022
Query: 170 LSMDQLKKMQDRVQKAKEEVQKAKEKYELALQE 202
+ +LK+ ++ KEE+ + + E
Sbjct: 1023 QLVSELKEQNTLLKTEKEELNRRIHDQAKEITE 1055
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils,
endocytosis/exocytosis, protein complex,
endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A
2rnd_A
Length = 251
Score = 29.8 bits (66), Expect = 1.1
Identities = 23/174 (13%), Positives = 49/174 (28%), Gaps = 5/174 (2%)
Query: 50 YKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNKKWNELIEKVMRTCWQKDTY 109
+++ + L ++ KA ++ K N+ E+ E W
Sbjct: 54 FEQCVQNFNKQLTEGTRLQKDLRTYLASVKAMHEASKKLNECLQEVYEP----DWPGRDE 109
Query: 110 HKTVLHIKERKEMEDAFKKAQKPWCKLLTKVNKTKNDYHVACKAERSASNQERNASADSS 169
+ + D +K + D +A
Sbjct: 110 ANKIAENND-LLWMDYHQKLVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYE 168
Query: 170 LSMDQLKKMQDRVQKAKEEVQKAKEKYELALQELNSYNPKYMEDMSVVFDKCQE 223
KK + ++ KA+EE+ KA++ +E +L P + +
Sbjct: 169 SLQTAKKKDEAKIAKAEEELIKAQKVFEEMNVDLQEELPSLWNSRVGFYVNTFQ 222
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.4 bits (68), Expect = 1.2
Identities = 12/91 (13%), Positives = 30/91 (32%), Gaps = 22/91 (24%)
Query: 174 QLKKM-QDRVQK---AKEEVQKA----KEKYELALQELNSYNPK--------------YM 211
Q + M D + A++ +A K+ Y ++ ++ NP
Sbjct: 1627 QEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRE 1686
Query: 212 EDMSVVFDKCQEMETTRLQFFKDSLFSIHKC 242
+++F+ + + + FK+
Sbjct: 1687 NYSAMIFETIVDGKLKTEKIFKEINEHSTSY 1717
>3h4z_A Maltose-binding periplasmic protein fused with Al DERP7; MBP
fusion, AHA1/BPI domain-like, super roll, sugar T
transport, allergen; HET: GLC; 2.35A {Escherichia coli}
Length = 568
Score = 29.9 bits (67), Expect = 1.4
Identities = 13/70 (18%), Positives = 31/70 (44%)
Query: 152 KAERSASNQERNASADSSLSMDQLKKMQDRVQKAKEEVQKAKEKYELALQELNSYNPKYM 211
A +A++ + A + + K EE+ KA ++ A+++ +++P +
Sbjct: 345 TAVINAASGRQTVDAALAAAQTNAAADPIHYDKITEEINKAVDEAVAAIEKSETFDPMKV 404
Query: 212 EDMSVVFDKC 221
D S F++
Sbjct: 405 PDHSDKFERH 414
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 1.5
Identities = 8/32 (25%), Positives = 17/32 (53%), Gaps = 7/32 (21%)
Query: 51 KRTTKRIEDGYKL-CND---LIALIQERADIE 78
K+ K+++ KL +D +A+ +A +E
Sbjct: 19 KQALKKLQASLKLYADDSAPALAI---KATME 47
Score = 26.8 bits (58), Expect = 6.8
Identities = 7/28 (25%), Positives = 14/28 (50%), Gaps = 5/28 (17%)
Query: 174 QLKKMQDRVQKAKEEVQKAKEKYELALQ 201
LKK+Q ++ ++ A LA++
Sbjct: 21 ALKKLQASLKLYADDSAPA-----LAIK 43
>3f42_A Protein HP0035; helicobacter pylori unknown-function, structural
genomics, P protein structure initiative; HET: MSE;
1.78A {Helicobacter pylori}
Length = 99
Score = 28.0 bits (63), Expect = 1.7
Identities = 3/20 (15%), Positives = 8/20 (40%)
Query: 172 MDQLKKMQDRVQKAKEEVQK 191
L M+ + +E+ +
Sbjct: 9 GGLLDGMKKEFSQLEEKNKD 28
>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome,
NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A
{Citrullus lanatus} PDB: 1sev_A
Length = 326
Score = 29.1 bits (66), Expect = 1.9
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 169 SLSMDQLKKMQDRVQKAKEEVQKAKEK 195
S + +++ + DR+Q EV +AK
Sbjct: 201 SFTQEEISYLTDRIQNGGTEVVEAKAG 227
>1j8b_A YBAB; hypothetical protein, structural genomics, structure function
project, S2F, unknown function; HET: MSE; 1.75A
{Haemophilus influenzae RD} SCOP: d.222.1.1 PDB: 1pug_A
Length = 112
Score = 27.6 bits (62), Expect = 2.7
Identities = 8/20 (40%), Positives = 16/20 (80%)
Query: 172 MDQLKKMQDRVQKAKEEVQK 191
M Q ++MQ+++QK +EE+ +
Sbjct: 14 MKQAQQMQEKMQKMQEEIAQ 33
>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD,
oxidoreductase, tricarboxylic acid cycle; 1.45A
{Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A*
1ib6_A* 1ie3_A* 4e0b_A*
Length = 312
Score = 28.7 bits (65), Expect = 2.9
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 169 SLSMDQLKKMQDRVQKAKEEVQKAKEK 195
S + ++ + R+Q A EV +AK
Sbjct: 193 SFTEQEVADLTKRIQNAGTEVVEAKAG 219
>4a3a_A Amphiphysin; structural genomics, invagination, knobs-IN-holes,
curvature membrane, structural genomics consortium;
1.78A {Homo sapiens} PDB: 4atm_A 3sog_A
Length = 243
Score = 28.2 bits (62), Expect = 4.1
Identities = 28/188 (14%), Positives = 56/188 (29%), Gaps = 6/188 (3%)
Query: 50 YKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNKKWNELIEKVMRTCWQKDTY 109
++ + + L ++ K ++ + K E + +V W
Sbjct: 40 FEEYVQNFKRQEAEGTRLQRELRGYLAAIKGMQEA----SMKLTESLHEVYEPDWYGRED 95
Query: 110 HKTVLHIKERKEMEDAFKKAQKPWCKLLTKVNKTKNDYHVACKAERSASNQERNASADSS 169
K V + ED +K L D +A
Sbjct: 96 VKMVGEKCD-VLWEDFHQKLVDGSLLTLDTYLGQFPDIKNRIAKRSRKLVDYDSARHHLE 154
Query: 170 LSMDQLKKMQDRVQKAKEEVQKAKEKYELALQELNSYNPKYMEDMSVVFDKC-QEMETTR 228
+K + R+ KA+EE QKA++ +E +L P + + + +
Sbjct: 155 ALQSSKRKDESRISKAEEEFQKAQKVFEEFNVDLQEELPSLWSRRVGFYVNTFKNVSSLE 214
Query: 229 LQFFKDSL 236
+F K+
Sbjct: 215 AKFHKEIA 222
>3h74_A Pyridoxal kinase; PSI-II, structural genomics, prote structure
initiative, NEW YORK SGX research center for STRU
genomics, nysgxrc; 1.30A {Lactobacillus plantarum} PDB:
3hyo_A* 3ibq_A*
Length = 282
Score = 28.3 bits (64), Expect = 4.3
Identities = 10/52 (19%), Positives = 17/52 (32%), Gaps = 6/52 (11%)
Query: 7 REIDGALHSLSCEGAQAVL-GGMSHHSDE--NMLIASSDSFWEPGNYKRTTK 55
I AL + GA AV+ +D+ + + G +R
Sbjct: 160 EVILPALQAQLKTGAHAVITDV--QRADQIGCAWLDEAGHVQYCG-ARRLPG 208
>1dd5_A Ribosome recycling factor; three-helix bundle, beta-alpha-beta
sandwich; 2.55A {Thermotoga maritima} SCOP: d.67.3.1
PDB: 1t1m_C
Length = 185
Score = 27.5 bits (62), Expect = 5.6
Identities = 9/48 (18%), Positives = 22/48 (45%), Gaps = 7/48 (14%)
Query: 155 RSASNQERNASADSSLSMDQLKKMQDRVQK------AK-EEVQKAKEK 195
R + + + + D K++++ +QK K +EV + K++
Sbjct: 133 REILKKIKEDQKEGLIPEDDAKRLENEIQKLTDEFIEKLDEVFEIKKE 180
>2ap3_A Conserved hypothetical protein; structural genomics, tetra helix,
PSI, protein structure INI midwest center for structural
genomics; 1.60A {Staphylococcus aureus subsp} SCOP:
a.24.27.1
Length = 199
Score = 27.5 bits (60), Expect = 6.0
Identities = 22/102 (21%), Positives = 46/102 (45%), Gaps = 2/102 (1%)
Query: 96 IEKVMRTCWQKDTYHKTVLHIKERKEMEDAFKKAQKPWCKLLTKVNKTKNDYHVACKAER 155
I++ T K + + + K+ E+ K K +L K K D + A R
Sbjct: 5 IQRPTSTTTDKKEIKAYLKQVDKIKDDEEPIKTVGKKIAELDEKKKKLTEDVNSKDTAVR 64
Query: 156 SASNQERNASADSSLSMDQLKKMQDRVQKAKEEVQKAKEKYE 197
+ ++ +AD L + +K +D ++K++++ +KAK +
Sbjct: 65 GKAVKDLIKNADDRLK--EFEKEEDAIKKSEQDFKKAKSHVD 104
>1ge9_A Ribosome recycling factor; three-helix bundle; NMR {Aquifex
aeolicus} SCOP: d.67.3.1
Length = 184
Score = 27.1 bits (61), Expect = 7.6
Identities = 9/39 (23%), Positives = 21/39 (53%), Gaps = 7/39 (17%)
Query: 162 RNASADSSLSMDQLKKMQ----DRVQKAKEEVQKAKEKY 196
RN ++ + +++++ D ++A E +QK +KY
Sbjct: 131 RNVRREA---KEMIEELEGISEDEKKRALERLQKLTDKY 166
>1is1_A Ribosome recycling factor; translation; 2.20A {Vibrio
parahaemolyticus} SCOP: d.67.3.1 PDB: 3r8n_Y
Length = 185
Score = 27.1 bits (61), Expect = 7.9
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 7/48 (14%)
Query: 155 RSASNQERNASADSSLSMDQLKKMQDRVQK------AK-EEVQKAKEK 195
R A+N + D +S D+ +K Q+ +QK K +EV AKEK
Sbjct: 133 RDANNDLKALLKDKEISEDEDRKAQEEIQKLTDVAVKKIDEVLAAKEK 180
>1ise_A Ribosome recycling factor; translation; 2.20A {Escherichia coli}
SCOP: d.67.3.1 PDB: 1ek8_A* 1zn0_A 1zn1_A 2rdo_8
Length = 185
Score = 26.7 bits (60), Expect = 8.1
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 7/48 (14%)
Query: 155 RSASNQERNASADSSLSMDQLKKMQDRVQK------AK-EEVQKAKEK 195
R A+++ + D +S D ++ QD VQK K E KE
Sbjct: 133 RDANDKVKALLKDKEISEDDDRRSQDDVQKLTDAAIKKIEAALADKEA 180
>3dqg_A Heat shock 70 kDa protein F; structural genomics, APC90008.12,
HSP70 protein, peptide-BIN domain, PSI-2, protein
structure initiative; 1.72A {Caenorhabditis elegans}
Length = 151
Score = 26.5 bits (59), Expect = 8.4
Identities = 13/51 (25%), Positives = 23/51 (45%)
Query: 148 HVACKAERSASNQERNASADSSLSMDQLKKMQDRVQKAKEEVQKAKEKYEL 198
+V+ + + Q+ + LS DQ++ M +K E K KE E+
Sbjct: 96 NVSARDRGTGKEQQIVIQSSGGLSKDQIENMIKEAEKNAAEDAKRKELVEV 146
>1ybx_A Conserved hypothetical protein; ST genomics, PSI, protein structure
initiative, southeast COLL for structural genomics,
secsg; HET: MSE; 1.80A {Clostridium thermocellum}
Length = 143
Score = 26.7 bits (59), Expect = 8.4
Identities = 6/20 (30%), Positives = 15/20 (75%)
Query: 172 MDQLKKMQDRVQKAKEEVQK 191
+ Q +KMQ +++ +EE+++
Sbjct: 47 VKQAQKMQRDMERVQEELKE 66
>1wqg_A Ribosome recycling factor; translation factor, triple-helix bundle,
protein synthesis, translation; 2.15A {Mycobacterium
tuberculosis} SCOP: d.67.3.1 PDB: 1wqf_A 1wqh_A
Length = 185
Score = 26.7 bits (60), Expect = 8.8
Identities = 8/48 (16%), Positives = 18/48 (37%), Gaps = 7/48 (14%)
Query: 155 RSASNQERNASADSSLSMDQLKKMQDRVQK------AK-EEVQKAKEK 195
R A + + D++ + + + K + +E+ K KE
Sbjct: 133 RKAMEELHRIRKEGEAGEDEVGRAEKDLDKTTHQYVTQIDELVKHKEG 180
>1eh1_A Ribosome recycling factor; translation, hinge variability; 2.60A
{Thermus thermophilus} SCOP: d.67.3.1 PDB: 2qbe_6 2qbg_6
2qbi_6* 2qbk_6* 2v46_Y* 2v48_Y* 2z4l_6* 2z4n_6* 3j0d_J
3j0e_G
Length = 185
Score = 26.7 bits (60), Expect = 9.0
Identities = 12/48 (25%), Positives = 26/48 (54%), Gaps = 7/48 (14%)
Query: 155 RSASNQERNASADSSLSMDQLKKMQDRVQK------AK-EEVQKAKEK 195
R A ++ + + + LS D+ K+ + +QK AK +++ + KE+
Sbjct: 134 REALDKLKKLAKELHLSEDETKRAEAEIQKITDEFIAKADQLAEKKEQ 181
>3lhp_S 4E10_D0_1ISEA_004_N (T93); epitope-scaffold, immune system; 2.70A
{Artificial gene} PDB: 1y69_8
Length = 123
Score = 26.4 bits (59), Expect = 9.2
Identities = 9/48 (18%), Positives = 16/48 (33%), Gaps = 7/48 (14%)
Query: 155 RSASNQERNASADSSLSMDQLKKMQDRVQK------AK-EEVQKAKEK 195
R A+++ D ++ + + VQK K E E
Sbjct: 71 RDANDKAAALGKDKEINWFDISQSLWDVQKLTDAAIKKIEAALADMEA 118
>2i5g_A Amidohydrolase; NYSGXRC, NYSGXRC-9311A, PSI2, structural
genomics, protein structure initiative; 2.60A
{Pseudomonas aeruginosa}
Length = 325
Score = 26.9 bits (60), Expect = 9.3
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 43 SFWEPGNYKRTTKRIEDGYKLCN---DLIALIQERADIEKAYAK 83
+ ++ T I KL DL+ ++ ADI KA +
Sbjct: 40 TVSVWEGFQATVNNITASNKLIRDNSDLVIPVRSTADIRKAKEQ 83
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.130 0.399
Gapped
Lambda K H
0.267 0.0765 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,359,717
Number of extensions: 301414
Number of successful extensions: 1247
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1146
Number of HSP's successfully gapped: 129
Length of query: 361
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 266
Effective length of database: 4,049,298
Effective search space: 1077113268
Effective search space used: 1077113268
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.0 bits)