RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5492
(361 letters)
>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 288
Score = 87.2 bits (215), Expect = 4e-20
Identities = 42/221 (19%), Positives = 77/221 (34%), Gaps = 34/221 (15%)
Query: 50 YKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNKKWNELIEKV--------MR 101
+ K + G + I ++ER +IE +YAK L+ +KK+
Sbjct: 11 FDNLEKHTQWGIDILEKYIKFVKERTEIELSYAKQLRNLSKKYQPKKNSKEEEEYKYTSC 70
Query: 102 TCWQ-------------------------KDTYHKTVLHIKERKEMEDAFKKAQKPWCKL 136
+ D +ERK +KAQ+
Sbjct: 71 KAFISNLNEMNDYAGQHEVISENMASQIIVDLARYVQELKQERKSNFHDGRKAQQHIETC 130
Query: 137 LTKVNKTKNDYHVACKAERSASNQERNASADSSLSMDQLKKMQDRVQKAKEEVQKAKEKY 196
++ +K + CK A AD +++ ++K + + Q + + +K Y
Sbjct: 131 WKQLESSKRRFERDCKEADRAQQYFEKMDADINVTKADVEKARQQAQIRHQMAEDSKADY 190
Query: 197 ELALQELNSYNPKYME-DMSVVFDKCQEMETTRLQFFKDSL 236
LQ+ N +Y + +F K QEME R+ +S+
Sbjct: 191 SSILQKFNHEQHEYYHTHIPNIFQKIQEMEERRIVRMGESM 231
>d2efka1 a.238.1.4 (A:10-288) CDC42-interacting protein 4, CIP4
{Human (Homo sapiens) [TaxId: 9606]}
Length = 279
Score = 80.7 bits (198), Expect = 7e-18
Identities = 37/224 (16%), Positives = 83/224 (37%), Gaps = 34/224 (15%)
Query: 50 YKRTTKRIEDGYKLCNDLIALIQERADIEKAYAKSLKGWNKK------------------ 91
++ + + G L + + ++ER ++E+AYAK L+ KK
Sbjct: 2 FEVLERHTQWGLDLLDRYVKFVKERTEVEQAYAKQLRSLVKKYLPKRPAKDDPESKFSQQ 61
Query: 92 --WNELIEKVMRTCWQKDTYHKTVL-------------HIKERKEMEDAFKKAQKPWCKL 136
+ +++++V Q++ + + +ERK ++AQ+
Sbjct: 62 QSFVQILQEVNDFAGQRELVAENLSVRVCLELTKYSQEMKQERKMHFQEGRRAQQQLENG 121
Query: 137 LTKVNKTKNDYHVACKAERSASNQERNASADSSLSMDQLKKMQDRVQKAKEEVQKAKEKY 196
++ +K + C+ A+ D + + ++K + + +++K +Y
Sbjct: 122 FKQLENSKRKFERDCREAEKAAQTAERLDQDINATKADVEKAKQQAHLRSHMAEESKNEY 181
Query: 197 ELALQELNSY-NPKYMEDMSVVFDKCQEMETTRLQFFKDSLFSI 239
LQ N Y M +FDK Q+M+ R +
Sbjct: 182 AAQLQRFNRDQAHFYFSQMPQIFDKLQDMDERRATRLGAGYGLL 225
>d1is1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Vibrio
parahaemolyticus [TaxId: 670]}
Length = 185
Score = 29.5 bits (66), Expect = 0.44
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 8/69 (11%)
Query: 135 KLLTKVNKTKNDYHVACKAERSASNQE-RNASADSSLSMDQLKKMQDRVQKAK------- 186
L+ V VA + R +N + + D +S D+ +K Q+ +QK
Sbjct: 112 DLVKIVRGEAEGGRVAVRNIRRDANNDLKALLKDKEISEDEDRKAQEEIQKLTDVAVKKI 171
Query: 187 EEVQKAKEK 195
+EV AKEK
Sbjct: 172 DEVLAAKEK 180
>d1eh1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermus
thermophilus [TaxId: 274]}
Length = 185
Score = 29.1 bits (65), Expect = 0.57
Identities = 13/69 (18%), Positives = 31/69 (44%), Gaps = 8/69 (11%)
Query: 135 KLLTKVNKTKNDYHVACKAERSASNQE-RNASADSSLSMDQLKKMQDRVQKAK------- 186
L+ V + + VA + R + + + + + LS D+ K+ + +QK
Sbjct: 113 DLVRAVRQYAEEGRVAIRNIRREALDKLKKLAKELHLSEDETKRAEAEIQKITDEFIAKA 172
Query: 187 EEVQKAKEK 195
+++ + KE+
Sbjct: 173 DQLAEKKEQ 181
>d1dd5a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermotoga
maritima [TaxId: 2336]}
Length = 184
Score = 26.9 bits (59), Expect = 2.7
Identities = 11/69 (15%), Positives = 30/69 (43%), Gaps = 8/69 (11%)
Query: 135 KLLTKVNKTKNDYHVACKAERSASNQE-RNASADSSLSMDQLKKMQDRVQKAK------- 186
K + K + + +A + R ++ + + + D K++++ +QK
Sbjct: 111 KWVKKAKEIVEEGKIAIRNIRREILKKIKEDQKEGLIPEDDAKRLENEIQKLTDEFIEKL 170
Query: 187 EEVQKAKEK 195
+EV + K++
Sbjct: 171 DEVFEIKKE 179
>d3erja1 c.131.1.1 (A:2-117) Hypothetical protein AF2095
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 116
Score = 26.3 bits (58), Expect = 2.8
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 100 MRTCWQKDTYHKTVLHIKERKEMEDAFKKAQK 131
+R W + K VL +K +E+ KA+
Sbjct: 38 LRRKWLDEGQKKVVLKVKSLEELLGIKHKAES 69
>d1j8ba_ d.222.1.1 (A:) Hypothetical protein HI0442 {Haemophilus
influenzae [TaxId: 727]}
Length = 92
Score = 25.4 bits (56), Expect = 4.0
Identities = 8/20 (40%), Positives = 16/20 (80%)
Query: 172 MDQLKKMQDRVQKAKEEVQK 191
M Q ++MQ+++QK +EE+ +
Sbjct: 5 MKQAQQMQEKMQKMQEEIAQ 24
>d1jmma_ b.30.6.1 (A:) V-region of surface antigen I/II (SA I/II,
PAC) {Streptococcus mutans [TaxId: 1309]}
Length = 377
Score = 26.5 bits (58), Expect = 5.1
Identities = 4/25 (16%), Positives = 9/25 (36%)
Query: 183 QKAKEEVQKAKEKYELALQELNSYN 207
+ + + + AL EL +
Sbjct: 8 PVKLKAYEDEQASIKAALAELEKHK 32
>d1ek8a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Escherichia
coli [TaxId: 562]}
Length = 185
Score = 26.1 bits (57), Expect = 5.9
Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 8/64 (12%)
Query: 140 VNKTKNDYHVACKAERSASNQE-RNASADSSLSMDQLKKMQDRVQKAK-------EEVQK 191
V VA + R +N + + D +S D ++ QD VQK E
Sbjct: 117 VRGEAEQARVAVRNVRRDANDKVKALLKDKEISEDDDRRSQDDVQKLTDAAIKKIEAALA 176
Query: 192 AKEK 195
KE
Sbjct: 177 DKEA 180
>d1ygpa_ c.87.1.4 (A:) Glycogen phosphorylase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 876
Score = 26.1 bits (57), Expect = 7.4
Identities = 6/33 (18%), Positives = 14/33 (42%)
Query: 59 DGYKLCNDLIALIQERADIEKAYAKSLKGWNKK 91
D Y + +D + + +++ + W KK
Sbjct: 813 DYYLVSDDFESYLATHELVDQEFHNQRSEWLKK 845
>d1wrda1 a.7.8.1 (A:215-307) Target of Myb protein 1, TOM1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 24.3 bits (53), Expect = 9.7
Identities = 7/53 (13%), Positives = 19/53 (35%), Gaps = 5/53 (9%)
Query: 180 DRVQKAKEEVQKAKEKYELALQELNSYNPKYMED-----MSVVFDKCQEMETT 227
+++ K + E++ + + L P E + + C+ M+
Sbjct: 1 EQIGKLRSELEMVSGNVRVMSEMLTELVPTQAEPADLELLQELNRTCRAMQQR 53
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.130 0.399
Gapped
Lambda K H
0.267 0.0658 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,356,292
Number of extensions: 62434
Number of successful extensions: 323
Number of sequences better than 10.0: 1
Number of HSP's gapped: 312
Number of HSP's successfully gapped: 69
Length of query: 361
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 275
Effective length of database: 1,226,816
Effective search space: 337374400
Effective search space used: 337374400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.3 bits)