Query psy5495
Match_columns 273
No_of_seqs 277 out of 1285
Neff 4.1
Searched_HMMs 29240
Date Fri Aug 16 18:56:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5495.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5495hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v2d_Y 50S ribosomal protein L 100.0 1.3E-36 4.3E-41 247.4 12.2 102 152-254 4-110 (110)
2 3r8s_U 50S ribosomal protein L 100.0 2.1E-34 7.3E-39 231.5 10.8 95 153-250 2-102 (102)
3 2ftc_N Mitochondrial ribosomal 100.0 8.7E-34 3E-38 225.7 11.6 92 158-250 1-96 (96)
4 2zjr_R 50S ribosomal protein L 100.0 1.2E-34 4.1E-39 237.1 3.6 100 149-250 10-114 (115)
5 3bbo_W Ribosomal protein L24; 100.0 8.3E-35 2.8E-39 255.6 -3.9 106 151-257 65-175 (191)
6 1vq8_T 50S ribosomal protein L 99.9 4.3E-24 1.5E-28 176.0 5.7 91 132-230 11-111 (120)
7 3j21_U 50S ribosomal protein L 99.9 4.7E-24 1.6E-28 176.0 4.7 99 124-230 6-114 (121)
8 2zkr_t 60S ribosomal protein L 99.8 1E-21 3.5E-26 166.4 5.0 82 151-242 45-127 (145)
9 3u5e_Y L33, YL33, 60S ribosoma 99.8 5E-21 1.7E-25 159.2 4.7 96 122-225 8-113 (127)
10 4a17_S RPL26, 60S ribosomal pr 99.8 9.6E-21 3.3E-25 158.8 4.1 94 124-225 9-112 (135)
11 3iz5_Y 60S ribosomal protein L 99.8 1.2E-20 4.2E-25 160.6 4.3 92 126-225 11-112 (150)
12 2zjr_R 50S ribosomal protein L 98.5 7.2E-08 2.5E-12 78.7 3.8 58 1-58 14-88 (115)
13 2ftc_N Mitochondrial ribosomal 98.4 1.4E-07 4.9E-12 74.8 4.6 53 6-58 1-69 (96)
14 3v2d_Y 50S ribosomal protein L 98.4 2E-07 6.8E-12 75.7 4.5 57 2-58 6-79 (110)
15 3r8s_U 50S ribosomal protein L 98.3 3.8E-07 1.3E-11 73.2 3.4 57 2-58 3-76 (102)
16 3bbo_W Ribosomal protein L24; 98.3 1.9E-07 6.6E-12 82.2 1.8 58 1-58 67-141 (191)
17 1nz9_A Transcription antitermi 97.7 3.9E-05 1.3E-09 54.4 4.4 36 153-188 3-38 (58)
18 3j21_U 50S ribosomal protein L 97.5 3.6E-05 1.2E-09 63.4 2.0 53 3-58 46-107 (121)
19 2zkr_t 60S ribosomal protein L 97.4 4.9E-05 1.7E-09 64.4 2.2 59 1-63 47-115 (145)
20 1vq8_T 50S ribosomal protein L 96.9 0.00025 8.6E-09 58.3 1.7 59 3-65 43-110 (120)
21 2e6z_A Transcription elongatio 96.9 0.00041 1.4E-08 49.9 2.1 37 152-188 5-41 (59)
22 3u5e_Y L33, YL33, 60S ribosoma 96.6 0.00065 2.2E-08 56.4 1.9 55 4-62 51-114 (127)
23 3p8b_B Transcription antitermi 96.6 0.0021 7.2E-08 53.1 4.9 60 152-222 89-148 (152)
24 4a17_S RPL26, 60S ribosomal pr 96.4 0.0011 3.7E-08 55.7 2.0 52 4-58 50-110 (135)
25 3iz5_Y 60S ribosomal protein L 96.3 0.0017 5.9E-08 55.3 2.9 52 4-58 50-110 (150)
26 2jvv_A Transcription antitermi 96.3 0.0035 1.2E-07 52.9 4.8 38 151-188 124-161 (181)
27 2do3_A Transcription elongatio 96.1 0.0043 1.5E-07 46.7 3.7 39 153-192 16-54 (69)
28 2ckk_A KIN17; beta barrel, rib 95.3 0.017 5.9E-07 47.4 4.6 40 146-188 65-104 (127)
29 2xhc_A Transcription antitermi 94.1 0.047 1.6E-06 51.6 5.0 37 152-188 296-332 (352)
30 1m1h_A Transcription antitermi 93.2 0.016 5.4E-07 52.4 0.0 37 152-188 192-228 (248)
31 2joy_A 50S ribosomal protein L 88.7 0.24 8.4E-06 38.6 2.7 36 155-191 4-39 (96)
32 3izc_N 60S ribosomal protein R 87.6 0.34 1.2E-05 40.6 3.1 36 155-191 15-50 (138)
33 3j21_5 50S ribosomal protein L 86.6 0.36 1.2E-05 37.0 2.5 36 155-191 4-39 (83)
34 3iz5_N 60S ribosomal protein L 86.4 0.37 1.3E-05 40.2 2.6 36 155-191 7-42 (134)
35 4a18_N RPL27, ribosomal protei 86.2 0.74 2.5E-05 38.9 4.4 41 155-195 5-51 (144)
36 4a18_F RPL14; ribosome, eukary 85.4 0.81 2.8E-05 37.8 4.2 36 155-191 7-42 (126)
37 4a18_E RPL6; ribosome, eukaryo 80.6 2.3 7.9E-05 37.4 5.4 62 154-218 44-109 (191)
38 2e70_A Transcription elongatio 76.9 2.5 8.4E-05 31.8 3.8 30 157-188 20-49 (71)
39 3izc_G 60S ribosomal protein R 76.0 2 6.8E-05 37.4 3.5 63 153-218 32-98 (176)
40 3iz5_G 60S ribosomal protein L 68.1 2.2 7.5E-05 38.2 2.0 62 154-218 74-139 (219)
41 1qp2_A Protein (PSAE protein); 63.9 6 0.0002 29.7 3.4 38 155-192 2-45 (70)
42 2oug_A Transcriptional activat 63.7 0.0094 3.2E-07 49.2 -13.3 30 153-182 108-137 (162)
43 1nz9_A Transcription antitermi 60.1 4.6 0.00016 27.9 2.1 26 3-28 5-31 (58)
44 3iz6_D 40S ribosomal protein S 55.8 12 0.00042 34.3 4.6 39 151-189 171-212 (265)
45 1zuy_A Myosin-5 isoform; SH3 d 50.8 14 0.00047 24.4 3.2 17 151-167 16-32 (58)
46 2g6f_X RHO guanine nucleotide 47.1 11 0.00037 25.3 2.2 16 151-166 19-34 (59)
47 2ew3_A SH3-containing GRB2-lik 46.6 11 0.00037 26.5 2.2 15 152-166 19-33 (68)
48 1zuu_A BZZ1 protein; SH3 domai 45.2 19 0.00065 23.8 3.2 17 152-168 17-33 (58)
49 1uti_A GRB2-related adaptor pr 44.5 13 0.00043 24.7 2.2 16 151-166 16-31 (58)
50 3kbg_A 30S ribosomal protein S 44.3 19 0.00064 32.0 3.9 38 151-188 135-176 (213)
51 2jz2_A SSL0352 protein; SH3-li 44.0 28 0.00094 25.8 4.1 40 155-194 2-43 (66)
52 1k4u_S Phagocyte NADPH oxidase 43.3 16 0.00055 24.6 2.6 15 152-166 21-35 (62)
53 2xzm_W 40S ribosomal protein S 43.3 32 0.0011 31.4 5.3 39 151-189 173-214 (260)
54 2vwf_A Growth factor receptor- 42.9 14 0.00047 24.5 2.2 15 152-166 18-32 (58)
55 3j20_E 30S ribosomal protein S 42.9 14 0.00048 33.4 2.9 39 151-189 175-217 (243)
56 2nwm_A Vinexin; cell adhesion; 42.2 14 0.00047 25.7 2.2 16 152-167 17-32 (65)
57 1ruw_A Myosin-3 isoform, MYO3; 41.4 22 0.00076 24.4 3.2 16 151-166 18-33 (69)
58 2x3w_D Syndapin I, protein kin 41.4 20 0.0007 23.8 2.9 15 152-166 19-33 (60)
59 2xmf_A Myosin 1E SH3; motor pr 41.3 15 0.00051 24.6 2.2 16 151-166 20-35 (60)
60 2ak5_A RHO guanine nucleotide 41.3 15 0.00051 24.9 2.2 15 152-166 22-36 (64)
61 2bzy_A CRK-like protein, CRKL 41.3 15 0.0005 25.3 2.2 16 151-166 18-33 (67)
62 2gnc_A SLIT-ROBO RHO GTPase-ac 41.2 15 0.00051 24.7 2.2 15 152-166 22-36 (60)
63 2e6z_A Transcription elongatio 40.7 7.5 0.00026 27.4 0.6 26 3-28 8-34 (59)
64 2ege_A Uncharacterized protein 40.7 16 0.00054 25.9 2.4 15 151-165 29-43 (75)
65 2a28_A BZZ1 protein; SH3 domai 40.5 28 0.00094 22.7 3.4 17 151-167 15-31 (54)
66 2iim_A Proto-oncogene tyrosine 40.5 20 0.00067 24.1 2.7 16 151-166 21-36 (62)
67 3u5c_E RP5, S7, YS6, 40S ribos 40.1 12 0.00041 34.2 2.0 38 151-188 171-211 (261)
68 1w70_A Neutrophil cytosol fact 40.0 16 0.00055 24.5 2.2 16 152-167 20-35 (60)
69 3c0c_A Endophilin-A2; endocyto 39.8 16 0.00054 25.6 2.2 15 152-166 29-43 (73)
70 2yuo_A CIP85, RUN and TBC1 dom 39.2 16 0.00055 25.8 2.2 14 152-165 23-36 (78)
71 1x2k_A OSTF1, osteoclast stimu 39.2 19 0.00064 24.8 2.5 16 151-166 22-37 (68)
72 1sem_A SEM-5; SRC-homology 3 ( 39.2 28 0.00096 22.9 3.3 16 151-166 17-32 (58)
73 1uj0_A Signal transducing adap 39.1 17 0.00058 24.6 2.2 15 152-166 21-35 (62)
74 2dl3_A Sorbin and SH3 domain-c 38.3 21 0.00073 24.3 2.7 15 152-166 23-37 (68)
75 2dl8_A SLIT-ROBO RHO GTPase-ac 38.2 17 0.00059 25.3 2.2 14 152-165 25-38 (72)
76 1csk_A C-SRC SH3 domain; phosp 38.1 22 0.00074 24.6 2.7 15 151-165 26-40 (71)
77 2eyx_A V-CRK sarcoma virus CT1 38.1 14 0.00047 25.6 1.6 15 152-166 24-38 (67)
78 1zx6_A YPR154WP; SH3 domain, p 38.0 18 0.00062 24.0 2.2 15 152-166 18-32 (58)
79 1zlm_A Osteoclast stimulating 37.1 19 0.00066 23.9 2.2 16 151-166 18-33 (58)
80 1j3t_A Intersectin 2; beta bar 37.0 18 0.00061 25.4 2.1 15 152-166 26-40 (74)
81 3eg3_A Proto-oncogene tyrosine 36.7 19 0.00067 24.0 2.2 14 152-165 21-34 (63)
82 1jo8_A ABP1P, actin binding pr 36.6 33 0.0011 22.6 3.4 16 151-166 15-30 (58)
83 2epd_A RHO GTPase-activating p 36.3 19 0.00066 25.4 2.2 15 152-166 26-40 (76)
84 1k1z_A VAV; SH3, proto-oncogen 35.3 33 0.0011 24.1 3.4 16 151-166 33-48 (78)
85 2ysq_A RHO guanine nucleotide 35.1 24 0.00083 25.1 2.6 15 152-166 26-40 (81)
86 1gcq_C VAV proto-oncogene; SH3 34.9 35 0.0012 23.4 3.4 15 152-166 26-40 (70)
87 1w1f_A Tyrosine-protein kinase 34.7 22 0.00075 24.0 2.2 15 152-166 23-37 (65)
88 2d8h_A SH3YL1 protein; SH3 dom 34.5 35 0.0012 24.1 3.4 16 152-167 33-48 (80)
89 2ydl_A SH3 domain-containing k 34.4 22 0.00074 25.0 2.2 16 151-166 17-32 (69)
90 1uhf_A Intersectin 2; beta bar 34.1 27 0.00092 24.2 2.7 15 151-165 23-37 (69)
91 2jt4_A Cytoskeleton assembly c 33.9 35 0.0012 23.3 3.3 15 152-166 22-36 (71)
92 2j6f_A CD2-associated protein; 33.9 23 0.00078 23.9 2.2 15 152-166 17-31 (62)
93 2lcs_A NAP1-binding protein 2; 32.9 29 0.00098 24.5 2.7 15 152-166 21-35 (73)
94 2dl4_A Protein STAC; SH3 domai 32.4 29 0.001 23.8 2.6 15 151-165 22-36 (68)
95 2k9g_A SH3 domain-containing k 32.2 25 0.00084 24.4 2.2 15 152-166 25-39 (73)
96 2ega_A SH3 and PX domain-conta 31.9 24 0.00082 24.3 2.1 15 152-166 24-38 (70)
97 2dlp_A KIAA1783 protein; SH3 d 31.9 24 0.00083 25.4 2.2 14 152-165 24-37 (85)
98 2ebp_A SAM and SH3 domain-cont 31.7 30 0.001 24.4 2.6 16 151-166 26-41 (73)
99 1jb0_E Photosystem 1 reaction 31.5 50 0.0017 25.0 3.8 34 155-188 1-39 (75)
100 1yn8_A NBP2, NAP1-binding prot 31.2 27 0.00093 23.0 2.2 14 152-165 17-30 (59)
101 1cka_A C-CRK N-terminal SH3 do 31.2 45 0.0016 21.8 3.3 15 152-166 17-31 (57)
102 2fei_A CD2-associated protein; 31.0 20 0.00069 24.9 1.5 14 152-165 17-30 (65)
103 2dl7_A KIAA0769 protein; SH3 d 31.0 27 0.00091 24.3 2.2 16 151-166 23-38 (73)
104 1i07_A Epidermal growth factor 30.7 27 0.00093 23.3 2.1 15 152-166 17-31 (60)
105 2fpf_A C-JUN-amino-terminal ki 30.4 34 0.0012 23.6 2.7 15 152-166 22-36 (71)
106 1uhc_A KIAA1010 protein; beta 30.4 45 0.0015 23.5 3.4 16 152-167 29-44 (79)
107 2dil_A Proline-serine-threonin 30.3 28 0.00096 23.9 2.2 15 152-166 24-38 (69)
108 2l0a_A STAM-1, signal transduc 30.1 27 0.00091 25.0 2.1 14 152-165 33-46 (72)
109 2dmo_A Neutrophil cytosol fact 30.0 25 0.00085 24.2 1.9 15 152-166 23-37 (68)
110 2vkn_A Protein SSU81; membrane 30.0 40 0.0014 23.2 3.0 14 152-165 23-36 (70)
111 1nm7_A Peroxisomal membrane pr 30.0 36 0.0012 24.2 2.8 16 152-167 24-39 (69)
112 2oi3_A Tyrosine-protein kinase 29.7 28 0.00095 24.9 2.2 15 152-166 41-55 (86)
113 1oot_A Hypothetical 40.4 kDa p 29.5 51 0.0017 21.8 3.4 17 151-167 18-34 (60)
114 2v1r_A Peroxisomal membrane pr 29.1 37 0.0013 23.9 2.7 16 152-167 31-46 (80)
115 1ujy_A RHO guanine nucleotide 28.9 21 0.00073 25.0 1.4 15 152-166 26-40 (76)
116 1b07_A Protein (proto-oncogene 28.6 51 0.0017 22.6 3.3 15 152-166 19-33 (65)
117 2dbm_A SH3-containing GRB2-lik 28.6 21 0.00071 24.9 1.3 15 152-166 23-37 (73)
118 2da9_A SH3-domain kinase bindi 28.4 30 0.001 23.8 2.1 16 151-166 22-37 (70)
119 2zzd_A Thiocyanate hydrolase s 28.4 43 0.0015 27.5 3.3 28 152-179 34-71 (126)
120 2dbk_A CRK-like protein; struc 28.3 37 0.0013 24.6 2.7 16 152-167 34-49 (88)
121 1wxt_A Hypothetical protein FL 28.1 40 0.0014 23.1 2.7 14 152-165 23-36 (68)
122 1x69_A Cortactin isoform A; SH 28.0 31 0.0011 24.4 2.1 15 152-166 33-47 (79)
123 2b86_A Cytoplasmic protein NCK 27.8 31 0.0011 24.2 2.1 15 151-165 19-33 (67)
124 1jqq_A PEX13P, peroxisomal mem 27.7 39 0.0013 24.5 2.7 16 152-167 31-46 (92)
125 1at0_A 17-hedgehog; developmen 27.3 87 0.003 25.1 5.0 30 150-179 87-117 (145)
126 1u5s_A Cytoplasmic protein NCK 27.3 40 0.0014 23.1 2.6 15 152-166 22-36 (71)
127 3izc_a 60S ribosomal protein R 26.9 4.5 0.00015 33.8 -2.9 39 155-193 5-49 (136)
128 2jte_A CD2-associated protein; 26.7 60 0.0021 21.7 3.4 15 152-166 22-36 (64)
129 2csi_A RIM-BP2, RIM binding pr 26.4 51 0.0018 23.1 3.1 16 151-166 29-44 (76)
130 1gbq_A GRB2; complex (signal t 26.0 40 0.0014 23.6 2.4 16 152-167 25-40 (74)
131 2enm_A Sorting nexin-9; SH3-li 25.9 60 0.0021 22.6 3.4 15 152-166 26-40 (77)
132 2dl5_A KIAA0769 protein; SH3 d 25.9 48 0.0016 23.4 2.8 17 152-168 29-45 (78)
133 1x6g_A Megakaryocyte-associate 25.8 61 0.0021 23.1 3.4 15 152-166 33-47 (81)
134 1ugv_A KIAA0621, olygophrenin- 25.3 22 0.00075 24.8 0.9 15 151-165 25-39 (72)
135 2csq_A RIM-BP2, RIM binding pr 25.2 59 0.002 24.0 3.4 14 152-165 41-54 (97)
136 2v1q_A SLA1, cytoskeleton asse 25.0 69 0.0024 21.0 3.4 15 152-166 18-32 (60)
137 3h0h_A Proto-oncogene tyrosine 24.9 65 0.0022 22.0 3.4 17 151-167 30-46 (73)
138 1d7q_A Translation initiation 24.9 70 0.0024 26.7 4.0 42 132-182 56-97 (143)
139 2o9s_A Ponsin; SH3 domain, sig 24.7 51 0.0018 22.3 2.7 15 152-166 22-36 (67)
140 3tee_A Flagella basal BODY P-r 24.7 46 0.0016 28.9 3.0 37 152-189 138-186 (219)
141 2dgy_A MGC11102 protein; EIF-1 24.7 61 0.0021 25.7 3.5 41 132-181 40-81 (111)
142 1tg0_A BBC1 protein, myosin ta 24.6 33 0.0011 23.5 1.7 15 152-166 23-37 (68)
143 2rf0_A Mitogen-activated prote 24.6 48 0.0016 24.5 2.7 15 152-166 45-59 (89)
144 3rnj_A Brain-specific angiogen 24.4 55 0.0019 22.2 2.9 15 152-166 24-38 (67)
145 2k2m_A EPS8-like protein 1; al 24.4 61 0.0021 22.2 3.1 14 152-165 24-37 (68)
146 2yuq_A Tyrosine-protein kinase 24.0 53 0.0018 23.6 2.8 15 152-166 35-49 (85)
147 3p8b_B Transcription antitermi 23.9 35 0.0012 27.5 2.0 28 3-30 92-120 (152)
148 3iz5_a 60S ribosomal protein L 23.8 4.7 0.00016 33.7 -3.3 39 155-193 5-49 (136)
149 1wxb_A Epidermal growth factor 23.8 53 0.0018 22.4 2.7 15 151-165 22-36 (68)
150 2yup_A Vinexin; sorbin and SH3 23.5 41 0.0014 24.5 2.1 15 152-166 33-47 (90)
151 2ekh_A SH3 and PX domain-conta 23.4 43 0.0015 23.8 2.2 15 151-165 23-37 (80)
152 2kxc_A Brain-specific angiogen 23.3 35 0.0012 23.2 1.6 16 151-166 22-37 (67)
153 1wyx_A CRK-associated substrat 23.1 65 0.0022 21.9 3.0 16 152-167 19-34 (69)
154 2ct4_A CDC42-interacting prote 22.6 76 0.0026 21.6 3.3 15 152-166 23-37 (70)
155 1wx6_A Cytoplasmic protein NCK 22.6 73 0.0025 23.0 3.4 15 152-166 33-47 (91)
156 2ct3_A Vinexin; SH3 domian, st 22.4 59 0.002 22.1 2.7 15 152-166 23-37 (70)
157 1wi7_A SH3-domain kinase bindi 22.2 36 0.0012 23.2 1.5 14 152-165 23-36 (68)
158 3qyh_B CO-type nitrIle hydrata 22.0 58 0.002 28.8 3.1 28 152-179 128-165 (219)
159 1ugp_B NitrIle hydratase beta 22.0 62 0.0021 28.7 3.4 28 152-179 136-173 (226)
160 2bz8_A SH3-domain kinase bindi 21.4 60 0.0021 21.3 2.5 16 152-167 17-32 (58)
161 2i0n_A Class VII unconventiona 21.1 58 0.002 23.1 2.5 17 152-168 26-42 (80)
162 3hht_B NitrIle hydratase beta 21.1 61 0.0021 28.9 3.1 28 152-179 139-176 (229)
163 2jw4_A Cytoplasmic protein NCK 20.7 83 0.0028 21.7 3.2 15 151-165 22-36 (72)
164 2yun_A Nostrin; nitric oxide s 20.7 86 0.0029 22.0 3.3 15 152-166 23-37 (79)
165 4a17_P RPL21, 60S ribosomal pr 20.5 69 0.0024 27.2 3.1 35 148-182 25-71 (157)
166 2cuc_A SH3 domain containing r 20.4 70 0.0024 21.7 2.7 15 152-166 23-37 (70)
167 3i5r_A Phosphatidylinositol 3- 20.3 82 0.0028 22.3 3.2 15 151-165 20-34 (83)
168 2ed1_A 130 kDa phosphatidylino 20.3 41 0.0014 23.6 1.5 14 152-165 26-39 (76)
169 1x6b_A RHO guanine exchange fa 20.1 44 0.0015 23.6 1.7 15 151-165 32-46 (79)
170 2m0y_A Dedicator of cytokinesi 20.1 71 0.0024 21.9 2.7 15 152-166 27-41 (74)
No 1
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ...
Probab=100.00 E-value=1.3e-36 Score=247.37 Aligned_cols=102 Identities=30% Similarity=0.424 Sum_probs=96.1
Q ss_pred ccceecCCeEEEeecCCCCceeEEEEEEccCCEEEEcCeeeEEeecCCC-----CceEEEeeecccCCCeeeeCCCCCCc
Q psy5495 152 DWSIFKGDRVEILVGKDKGKQGYVIQIFQEINSVIVEGLNTYLKKMGDS-----QFIIKQEAPLLVTNEVALVDPSDRMG 226 (273)
Q Consensus 152 ~w~I~kGD~V~VI~GkDKGK~GkV~~V~r~~n~ViVEGvN~~~k~v~~~-----Ggii~~EaPIhvtSNV~LVdP~~~Kp 226 (273)
.|+|++||+|+||+|+||||+|+|++|++++|+|+|||+|++++|++++ |||+++|+|||+ |||+|+||++++|
T Consensus 4 k~~IkkGD~V~Vi~GkdKGk~GkV~~V~~~~~~ViVEGvN~~kkh~kp~~~~~~Ggi~~~E~PIh~-SNV~lv~p~~~k~ 82 (110)
T 3v2d_Y 4 KMHVKKGDTVLVASGKYKGRVGKVKEVLPKKYAVIVEGVNIVKKAVRVSPKYPQGGFIEKEAPLHA-SKVRPICPACGKP 82 (110)
T ss_dssp CCSCCTTSEEEECSSTTTTCEEEEEEEEGGGTEEEETTSSEEEEECCSSSSSTTCCEEEEECCEEG-GGEEEBCTTTCSB
T ss_pred ccccCCCCEEEEeEcCCCCeEeEEEEEECCCCEEEEeCEEEEEEEeCCCccCCCCCEEEEECCcCH-HHeEEEcCcCCCc
Confidence 6899999999999999999999999999999999999999999998743 999999999999 9999999999999
Q ss_pred eeEEEEEecCCcEEEEEccCCcccCCCC
Q psy5495 227 CQVEWRYTEAGDRVRVSKRSGRIIPIPM 254 (273)
Q Consensus 227 trV~~r~~edGkKVRvskksG~iIP~P~ 254 (273)
|||+|++++||+|||||++||++|+.|+
T Consensus 83 tRvg~~~~edG~kvRv~kk~g~~i~~~~ 110 (110)
T 3v2d_Y 83 TRVRKKFLENGKKIRVCAKCGGALDTEE 110 (110)
T ss_dssp CCEEEEECSSCCEEEEESSSCCBCC---
T ss_pred cEEEEEECCCCcEEEEEecCCCccCCCC
Confidence 9999999999999999999999998764
No 2
>3r8s_U 50S ribosomal protein L24; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2j28_U* 3fik_U 3j19_U 2wwq_U 3oat_U* 3oas_U* 3ofd_U 3ofc_U 3ofr_U* 3ofz_U* 3og0_U 3ofq_U 3r8t_U 3i1n_U 1vs8_U 1vs6_U 1vt2_U 3i1p_U 3i1r_U 3i1t_U ...
Probab=100.00 E-value=2.1e-34 Score=231.50 Aligned_cols=95 Identities=35% Similarity=0.490 Sum_probs=90.6
Q ss_pred cceecCCeEEEeecCCCCceeEEEEEEccCCEEEEcCeeeEEeecCC------CCceEEEeeecccCCCeeeeCCCCCCc
Q psy5495 153 WSIFKGDRVEILVGKDKGKQGYVIQIFQEINSVIVEGLNTYLKKMGD------SQFIIKQEAPLLVTNEVALVDPSDRMG 226 (273)
Q Consensus 153 w~I~kGD~V~VI~GkDKGK~GkV~~V~r~~n~ViVEGvN~~~k~v~~------~Ggii~~EaPIhvtSNV~LVdP~~~Kp 226 (273)
.+|++||+|+||+|+||||+|+|++|+++ |+|+|||+|++++|.++ .|||+++|+|||+ |||||+||+|++|
T Consensus 2 ~~IkkGD~V~Vi~GkdKGk~GkV~~V~~~-~~ViVeGvN~~kkh~kp~~~~~~~Ggi~~~E~PIh~-SNV~lv~p~~~k~ 79 (102)
T 3r8s_U 2 AKIRRDDEVIVLTGKDKGKRGKVKNVLSS-GKVIVEGINLVKKHQKPVPALNQPGGIVEKEAAIQV-SNVAIFNAATGKA 79 (102)
T ss_dssp CSSCSSCEEEECSSSSTTCEEEEEEEETT-TEEEETTCSEEEEEECCCSSSSCSCEEEEEECCEEG-GGEEEEETTTTEE
T ss_pred CCccCCCEEEEeEcCCCCeeeEEEEEEeC-CEEEEeCeEEEEeccccCcccCCCCCEEEEECCcCH-HHEEEEcCcCCCc
Confidence 47999999999999999999999999999 99999999999999853 2999999999999 9999999999999
Q ss_pred eeEEEEEecCCcEEEEEccCCccc
Q psy5495 227 CQVEWRYTEAGDRVRVSKRSGRII 250 (273)
Q Consensus 227 trV~~r~~edGkKVRvskksG~iI 250 (273)
|||+|+ ++||+|+|||++||++|
T Consensus 80 trvg~~-~edG~kvRv~k~~g~~i 102 (102)
T 3r8s_U 80 DRVGFR-FEDGKKVRFFKSNSETI 102 (102)
T ss_dssp ECEEEE-EETTEEEEEETTTTEEC
T ss_pred eEEEEE-eCCCeEEEEEeecCcCC
Confidence 999999 79999999999999986
No 3
>2ftc_N Mitochondrial ribosomal protein L24; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_N
Probab=100.00 E-value=8.7e-34 Score=225.73 Aligned_cols=92 Identities=59% Similarity=0.912 Sum_probs=89.5
Q ss_pred CCeEEEeecCCCCceeEEEEEEccCCEEEEcCeeeEEeecCCC----CceEEEeeecccCCCeeeeCCCCCCceeEEEEE
Q psy5495 158 GDRVEILVGKDKGKQGYVIQIFQEINSVIVEGLNTYLKKMGDS----QFIIKQEAPLLVTNEVALVDPSDRMGCQVEWRY 233 (273)
Q Consensus 158 GD~V~VI~GkDKGK~GkV~~V~r~~n~ViVEGvN~~~k~v~~~----Ggii~~EaPIhvtSNV~LVdP~~~KptrV~~r~ 233 (273)
||+|+||+|+||||+|+|++|++++++|+|||+|++++|++++ |+++++|+|||+ |||||+||++++||||+|++
T Consensus 1 GD~V~Vi~GkdKGk~GkV~~V~~~~~~ViVeGvN~~kkh~kp~~~~~Ggiv~~e~pIh~-SNV~lv~p~~~k~tRvg~~~ 79 (96)
T 2ftc_N 1 GDTVEILEGKDAGKQGKVVQVIRQRNWVVVGGLNTHYRYIGKTMDYRGTMIPSEAPLLH-RQVKLVDPMDRKPTEIEWRF 79 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEECCCCEEEEeCCEEEEEEcCCCCCCCCCEEEEecCcCH-HHEEEEeCcCCCceEEEEEE
Confidence 8999999999999999999999999999999999999999875 999999999999 99999999999999999999
Q ss_pred ecCCcEEEEEccCCccc
Q psy5495 234 TEAGDRVRVSKRSGRII 250 (273)
Q Consensus 234 ~edGkKVRvskksG~iI 250 (273)
++||+|+|+|++||++|
T Consensus 80 ~~dg~kvR~~kk~g~~i 96 (96)
T 2ftc_N 80 TEAGERVRVSTRSGRII 96 (96)
T ss_pred ccCCcEEEEEeccCCCC
Confidence 99999999999999986
No 4
>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V
Probab=100.00 E-value=1.2e-34 Score=237.13 Aligned_cols=100 Identities=34% Similarity=0.440 Sum_probs=94.5
Q ss_pred cCcccceecCCeEEEeecCCCCceeEEEEEEccCCEEEEcCeeeEEeecCCC-----CceEEEeeecccCCCeeeeCCCC
Q psy5495 149 PIKDWSIFKGDRVEILVGKDKGKQGYVIQIFQEINSVIVEGLNTYLKKMGDS-----QFIIKQEAPLLVTNEVALVDPSD 223 (273)
Q Consensus 149 Pi~~w~I~kGD~V~VI~GkDKGK~GkV~~V~r~~n~ViVEGvN~~~k~v~~~-----Ggii~~EaPIhvtSNV~LVdP~~ 223 (273)
-++.|+|++||+|+||+|+||||+|+|++|++++|+|+|||+|++++|++++ |||+++|+|||+ |||+|+||+|
T Consensus 10 ~~rkm~IkkGD~V~Vi~GkdKGk~GkV~~V~~~~~~V~VEGvN~~kkh~kp~~~~~~Ggiv~~e~PIh~-SNV~lv~p~~ 88 (115)
T 2zjr_R 10 HNDKLHFKKGDTVIVLSGKHKGQTGKVLLALPRDQKVVVEGVNVITKNVKPSMTNPQGGQEQRELALHA-SKVALVDPET 88 (115)
T ss_dssp TTSCCSSCTTSEEECCSSSSTTCEEEEEEEETTTTEEEESSSCBCCCCCCTTSSSCCCCCCCBCCCBCS-SSEECBSSSS
T ss_pred cceeCcccCCCEEEEeEcCCCCcEEEEEEEECCCCEEEEeCcEeEEEecCCCcCCCCCCEEEEEcccCH-HHEEEEeccC
Confidence 3467999999999999999999999999999999999999999999998753 999999999999 9999999999
Q ss_pred CCceeEEEEEecCCcEEEEEccCCccc
Q psy5495 224 RMGCQVEWRYTEAGDRVRVSKRSGRII 250 (273)
Q Consensus 224 ~KptrV~~r~~edGkKVRvskksG~iI 250 (273)
++||||+|++ +||+|+|+|++||++|
T Consensus 89 ~k~tRvg~~~-~dG~kvR~~kk~g~~i 114 (115)
T 2zjr_R 89 GKATRVRKQI-VDGKKVRVAVASGKTI 114 (115)
T ss_dssp BCCCCCCCCC-SCTTSCCCCSSSCCC-
T ss_pred CCceEEEEEE-cCCCEEEEEeecCCCc
Confidence 9999999999 8999999999999988
No 5
>3bbo_W Ribosomal protein L24; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=99.97 E-value=8.3e-35 Score=255.56 Aligned_cols=106 Identities=26% Similarity=0.354 Sum_probs=99.3
Q ss_pred cccceecCCeEEEeecCCCCceeEEEEEEccCCEEEEcCeeeEEeecCCC-----CceEEEeeecccCCCeeeeCCCCCC
Q psy5495 151 KDWSIFKGDRVEILVGKDKGKQGYVIQIFQEINSVIVEGLNTYLKKMGDS-----QFIIKQEAPLLVTNEVALVDPSDRM 225 (273)
Q Consensus 151 ~~w~I~kGD~V~VI~GkDKGK~GkV~~V~r~~n~ViVEGvN~~~k~v~~~-----Ggii~~EaPIhvtSNV~LVdP~~~K 225 (273)
..|+|++||+|+||+|+||||+|+|++|++++|+|+|||+|++++|++++ |+|+++|+|||+ |||+|+||+|++
T Consensus 65 ~kmkIkKGD~V~VIaGkDKGK~GkVl~V~~k~~rViVEGVN~vkKH~Kp~~~~~~GgIv~kEaPIhi-SNV~Lvdp~~gk 143 (191)
T 3bbo_W 65 HKRHVKVGDTVKVISGGEKGKIGEISKIHKHNSTVIIKDLNFKTKHVKSKEEGEQGQIIKIEAAIHS-SNVMLILKEQEV 143 (191)
T ss_dssp TSCCSCCSSCEEECSSSSTTCCCSCCCCCSSSCCCCCSSCCCCCCBCCSCCSSSCCBSSCCCCCCCG-GGEEECSSSSCC
T ss_pred ccCeeecCCEEEEeecCCCCceEEEEEEECCCCEEEEeCCEEEEEecCCcccCCCCCEEEEecCcCH-HHeEEEeccCCC
Confidence 37899999999999999999999999999999999999999999999863 999999999999 999999999999
Q ss_pred ceeEEEEEecCCcEEEEEccCCcccCCCCCcc
Q psy5495 226 GCQVEWRYTEAGDRVRVSKRSGRIIPIPMAAY 257 (273)
Q Consensus 226 ptrV~~r~~edGkKVRvskksG~iIP~P~~a~ 257 (273)
+|||+|++++||+|||||++||++|++|+.-+
T Consensus 144 ptRVg~k~~edGkKVRv~KksGe~I~~p~~~~ 175 (191)
T 3bbo_W 144 ADRVGHKILEDVRKVRYLIKTGEIVDTPDRWK 175 (191)
T ss_dssp CCCCCCCSSSCCCCCSSSCCSSSCCCCCC---
T ss_pred ceEEEEEEccCCcEEEEEecCCCCcCChhHHH
Confidence 99999999889999999999999999997643
No 6
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...
Probab=99.89 E-value=4.3e-24 Score=176.04 Aligned_cols=91 Identities=22% Similarity=0.235 Sum_probs=82.7
Q ss_pred hhcCCCccccCCCCCcccCc----------ccceecCCeEEEeecCCCCceeEEEEEEccCCEEEEcCeeeEEeecCCCC
Q psy5495 132 LARNRPWEKNKKKIPIEPIK----------DWSIFKGDRVEILVGKDKGKQGYVIQIFQEINSVIVEGLNTYLKKMGDSQ 201 (273)
Q Consensus 132 ~~~n~p~~~r~~kv~vePi~----------~w~I~kGD~V~VI~GkDKGK~GkV~~V~r~~n~ViVEGvN~~~k~v~~~G 201 (273)
...|.|...|+ +...+|++ .|+|++||+|+||+|+|||++|+|++|++++++|+|||+|+ ++ ++|
T Consensus 11 ~~~~Ap~h~rr-k~msa~LskeLr~ky~vr~~~IkkGD~V~Vi~G~dKGk~GkV~~V~~k~~~V~VEgvn~-kK---~~G 85 (120)
T 1vq8_T 11 SQRRAPLHERH-KQVRATLSADLREEYGQRNVRVNAGDTVEVLRGDFAGEEGEVINVDLDKAVIHVEDVTL-EK---TDG 85 (120)
T ss_dssp HHHTCCGGGSG-GGGEEEECHHHHHHHTCSEEECCTTCEEEECSSTTTTCEEEEEEEETTTTEEEETTCEE-EC---SSS
T ss_pred HhhcCCcchhh-heeeCcCCHHHHHhhccccccccCCCEEEEEecCCCCCEEEEEEEECCCCEEEEeCeEe-Ec---CCC
Confidence 34588888888 88888874 79999999999999999999999999999999999999999 55 457
Q ss_pred ceEEEeeecccCCCeeeeCCCCCCceeEE
Q psy5495 202 FIIKQEAPLLVTNEVALVDPSDRMGCQVE 230 (273)
Q Consensus 202 gii~~EaPIhvtSNV~LVdP~~~KptrV~ 230 (273)
+ ++|+|||+ |||+|+||.+++++|++
T Consensus 86 g--~~e~pIh~-SNV~i~~~~~~k~~Rv~ 111 (120)
T 1vq8_T 86 E--EVPRPLDT-SNVRVTDLDLEDEKREA 111 (120)
T ss_dssp C--EEECCBCG-GGEEEEECCCCCHHHHH
T ss_pred C--EEEeeech-HHEEEEeccCCCchhhe
Confidence 7 89999999 99999999999999886
No 7
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.89 E-value=4.7e-24 Score=176.00 Aligned_cols=99 Identities=19% Similarity=0.283 Sum_probs=87.0
Q ss_pred CCCCChhhhhcCCCccccCCCCCcccCc----------ccceecCCeEEEeecCCCCceeEEEEEEccCCEEEEcCeeeE
Q psy5495 124 DRPWEVPFLARNRPWEKNKKKIPIEPIK----------DWSIFKGDRVEILVGKDKGKQGYVIQIFQEINSVIVEGLNTY 193 (273)
Q Consensus 124 ~rPwt~~~~~~n~p~~~r~~kv~vePi~----------~w~I~kGD~V~VI~GkDKGK~GkV~~V~r~~n~ViVEGvN~~ 193 (273)
+-|-.+.-...|.|...|+ ++..+|++ +|+|++||+|+||+|+||||+|+|++|++++++|+|||+|++
T Consensus 6 ~~~rK~Rk~~f~Ap~h~r~-k~msa~LSkeLR~ky~~r~~~IkkGD~V~Vi~GkdKGk~GkV~~V~~k~~~V~VEgvn~~ 84 (121)
T 3j21_U 6 KQPRKQRKFLYNAPLHVRQ-KLMSAPLSRELREKYKVRNLPVRVGDKVRIMRGDYKGHEGKVVEVDLKRYRIYVEGATLR 84 (121)
T ss_dssp CCHHHHHHHHHHCCTTGGG-GGSEEEBCHHHHHHTCCSEEECCSSSEEEECSSSCSSEEEEEEEEETTTTEEEETTCEEE
T ss_pred CCchhhHHHhhcCCcchhh-hhhcCcCCHHHHHHhCCcccccccCCEEEEeecCCCCcEeEEEEEEecCCEEEEeCeEEE
Confidence 3444444555788999999 99999986 499999999999999999999999999999999999999998
Q ss_pred EeecCCCCceEEEeeecccCCCeeeeCCCCCCceeEE
Q psy5495 194 LKKMGDSQFIIKQEAPLLVTNEVALVDPSDRMGCQVE 230 (273)
Q Consensus 194 ~k~v~~~Ggii~~EaPIhvtSNV~LVdP~~~KptrV~ 230 (273)
++ +| .+.|+|||+ |||+|+||++++++|++
T Consensus 85 k~----~G--~~~e~pIh~-SNV~l~~~~~~d~~R~~ 114 (121)
T 3j21_U 85 KT----NG--TEVFYPIHP-SNVMIIELNLEDEKRKK 114 (121)
T ss_dssp CS----SS--CEEECCBCG-GGEEEEECCCCCHHHHH
T ss_pred ec----CC--cEEEcccCH-HHeEEEcCccCCcHHHH
Confidence 75 35 389999999 99999999999998875
No 8
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=99.84 E-value=1e-21 Score=166.41 Aligned_cols=82 Identities=18% Similarity=0.275 Sum_probs=66.7
Q ss_pred cccceecCCeEEEeecCCCCce-eEEEEEEccCCEEEEcCeeeEEeecCCCCceEEEeeecccCCCeeeeCCCCCCceeE
Q psy5495 151 KDWSIFKGDRVEILVGKDKGKQ-GYVIQIFQEINSVIVEGLNTYLKKMGDSQFIIKQEAPLLVTNEVALVDPSDRMGCQV 229 (273)
Q Consensus 151 ~~w~I~kGD~V~VI~GkDKGK~-GkV~~V~r~~n~ViVEGvN~~~k~v~~~Ggii~~EaPIhvtSNV~LVdP~~~KptrV 229 (273)
+.|+|++||+|+||+|+|||++ |+|++|++++++|+|||||+. +++| ++.|+|||+ |||+|+||.++++++
T Consensus 45 r~~~IkkGD~V~Vi~GkdKGk~~GkV~~V~~k~~~V~VEgvn~~----Kp~G--~~~e~PIh~-SNV~lv~~~~~k~~k- 116 (145)
T 2zkr_t 45 RSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQRE----KANG--TTVHVGIHP-SKVVITRLKLDKDRK- 116 (145)
T ss_dssp -CCBCCTTCEEEECSSTTTTCCSEEEEEEETTTTEEEETTCEEE----CSSC--CEEECCBCG-GGEEECC-CCCHHHH-
T ss_pred cccccCCCCEEEEeecCCCCcceeEEEEEECCCCEEEEeeeEeE----cCCC--ceEEeccCH-HHEEEEcCcCCchHH-
Confidence 5799999999999999999999 999999999999999999993 3456 899999999 999999999999986
Q ss_pred EEEEecCCcEEEE
Q psy5495 230 EWRYTEAGDRVRV 242 (273)
Q Consensus 230 ~~r~~edGkKVRv 242 (273)
..++...+.|.
T Consensus 117 --~~le~k~~~r~ 127 (145)
T 2zkr_t 117 --KILERKAKSRQ 127 (145)
T ss_dssp --HHHHC------
T ss_pred --HHhhcccccch
Confidence 33454444443
No 9
>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L 2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 4b6a_Y 1s1i_U 3izc_Y 3izs_Y 3jyw_U
Probab=99.82 E-value=5e-21 Score=159.19 Aligned_cols=96 Identities=13% Similarity=0.146 Sum_probs=81.9
Q ss_pred CCCCCCChhhhhcCCCccccCCCCCcccCc----------ccceecCCeEEEeecCCCCceeEEEEEEccCCEEEEcCee
Q psy5495 122 STDRPWEVPFLARNRPWEKNKKKIPIEPIK----------DWSIFKGDRVEILVGKDKGKQGYVIQIFQEINSVIVEGLN 191 (273)
Q Consensus 122 ~~~rPwt~~~~~~n~p~~~r~~kv~vePi~----------~w~I~kGD~V~VI~GkDKGK~GkV~~V~r~~n~ViVEGvN 191 (273)
-++-|-.+.-...|.|...|+ +..-+|++ .++|++||+|+||+|+|||++|+|++|++++++|+|||||
T Consensus 8 vss~~rKqRK~~f~Ap~h~r~-k~msa~LSkeLr~ky~vrs~~IkkgD~V~Vi~GkdKGk~GkV~~V~~kk~~V~VEgVn 86 (127)
T 3u5e_Y 8 VSSDRRKARKAYFTAPSSQRR-VLLSAPLSKELRAQYGIKALPIRRDDEVLVVRGSKKGQEGKISSVYRLKFAVQVDKVT 86 (127)
T ss_dssp CCCCHHHHHHHHHTCCHHHHH-HHTEEEBCHHHHHHHTCCEEECCTTCEEEECSSTTTTCEEEEEEEEGGGTEEEEETCE
T ss_pred cCCCchhhHHHhhcCCcchhh-hheeCcCCHHHHHHhCcCcccccCCCEEEEeecCCCCccceEEEEECCCCEEEEeCeE
Confidence 344455555566788888888 77777875 6999999999999999999999999999999999999999
Q ss_pred eEEeecCCCCceEEEeeecccCCCeeeeCCCCCC
Q psy5495 192 TYLKKMGDSQFIIKQEAPLLVTNEVALVDPSDRM 225 (273)
Q Consensus 192 ~~~k~v~~~Ggii~~EaPIhvtSNV~LVdP~~~K 225 (273)
+.+. +|+ +.|+|||+ |||+|+||++++
T Consensus 87 ~~K~----~G~--~~e~pIh~-SNV~i~~~~~dk 113 (127)
T 3u5e_Y 87 KEKV----NGA--SVPINLHP-SKLVITKLHLDK 113 (127)
T ss_dssp EECS----SSC--EEECCBCG-GGEEEEECCCCH
T ss_pred EECC----CCc--EEEcccch-HHEEEEccccCc
Confidence 9853 464 78999999 999999999864
No 10
>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_S 4a1c_S 4a1e_S
Probab=99.80 E-value=9.6e-21 Score=158.84 Aligned_cols=94 Identities=18% Similarity=0.180 Sum_probs=79.6
Q ss_pred CCCCChhhhhcCCCccccCCCCCcccCc----------ccceecCCeEEEeecCCCCceeEEEEEEccCCEEEEcCeeeE
Q psy5495 124 DRPWEVPFLARNRPWEKNKKKIPIEPIK----------DWSIFKGDRVEILVGKDKGKQGYVIQIFQEINSVIVEGLNTY 193 (273)
Q Consensus 124 ~rPwt~~~~~~n~p~~~r~~kv~vePi~----------~w~I~kGD~V~VI~GkDKGK~GkV~~V~r~~n~ViVEGvN~~ 193 (273)
+-|-.+.-...|.|...|+ +..-.|++ .++|++||+|+||+|+|||++|+|++|++++++|+|||||+.
T Consensus 9 s~~rKqRK~~f~Ap~h~rr-k~msa~LSkeLr~ky~vRs~~IkkgD~V~Vi~GkdKGk~GkV~~V~~kk~~V~VEgVn~~ 87 (135)
T 4a17_S 9 SARRKQRKAHFASPSHLRQ-TLMSAHLSKDLRSKYNVRSMPVRKDDEVLIVRGKFKGNKGKVTQVYRKKWAIHVEKISKN 87 (135)
T ss_dssp CCHHHHHHHHHTCCHHHHH-HHSEEEECHHHHHHHTCSEEECCTTCEEEECSSTTTTCEEEEEEEETTTTEEEETTCCEE
T ss_pred CCchhhHHHhhcCCcchhh-heeeCcCCHHHHHHhCCCcccccCCCEEEEeecCCCCceeeEEEEEcCCCEEEEeCeEEE
Confidence 3344444455688888887 77777764 789999999999999999999999999999999999999998
Q ss_pred EeecCCCCceEEEeeecccCCCeeeeCCCCCC
Q psy5495 194 LKKMGDSQFIIKQEAPLLVTNEVALVDPSDRM 225 (273)
Q Consensus 194 ~k~v~~~Ggii~~EaPIhvtSNV~LVdP~~~K 225 (273)
+. +|+ +.|+|||+ |||+|+||++++
T Consensus 88 K~----~G~--~~e~pIh~-SNV~i~~~k~dk 112 (135)
T 4a17_S 88 KL----NGA--PYQIPLSA-SQLVLTKLKLDK 112 (135)
T ss_dssp ET----TTE--EECCCBCG-GGEEEEECCCCH
T ss_pred cC----CCC--EEEcccch-HHEEEEcccCCc
Confidence 63 463 88999999 999999999865
No 11
>3iz5_Y 60S ribosomal protein L26 (L24P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Y
Probab=99.80 E-value=1.2e-20 Score=160.56 Aligned_cols=92 Identities=15% Similarity=0.161 Sum_probs=77.6
Q ss_pred CCChhhhhcCCCccccCCCCCcccCc----------ccceecCCeEEEeecCCCCceeEEEEEEccCCEEEEcCeeeEEe
Q psy5495 126 PWEVPFLARNRPWEKNKKKIPIEPIK----------DWSIFKGDRVEILVGKDKGKQGYVIQIFQEINSVIVEGLNTYLK 195 (273)
Q Consensus 126 Pwt~~~~~~n~p~~~r~~kv~vePi~----------~w~I~kGD~V~VI~GkDKGK~GkV~~V~r~~n~ViVEGvN~~~k 195 (273)
|-.+.-...|.|...|+ ++.-.|++ .++|++||+|+||+|+|||++|+|++|++++++|+|||||+.+.
T Consensus 11 ~rKqRK~~f~Ap~h~Rr-k~msa~LSkELR~ky~vRs~~IkKGD~V~Vi~GkdKGk~GkVl~V~~kk~~V~VEGVN~~K~ 89 (150)
T 3iz5_Y 11 RRKCRKAHFTAPSSVRR-VLMSAALSTELRHKYNVRSIPIRKDDEVQVVRGSYKGREGKVVQVYRRRWVIHVERITREKV 89 (150)
T ss_dssp HHHHHHHHHHCCHHHHH-HTTEEEECHHHHTTTTCSEEECCSSSEEEECSSTTTTCEEEEEEEETTTTEEEETTCEEECT
T ss_pred chHHHHHhhcCCcchhh-hheeCcCCHHHHHHhCCcccccCCCCEEEEeecCCCCccceEEEEEcCCCEEEEeCcEEEeC
Confidence 33334444577777777 77777764 68999999999999999999999999999999999999999874
Q ss_pred ecCCCCceEEEeeecccCCCeeeeCCCCCC
Q psy5495 196 KMGDSQFIIKQEAPLLVTNEVALVDPSDRM 225 (273)
Q Consensus 196 ~v~~~Ggii~~EaPIhvtSNV~LVdP~~~K 225 (273)
+|. +.|+|||+ |||+|+||++++
T Consensus 90 ----~G~--~~eapIh~-SNV~i~~~k~dk 112 (150)
T 3iz5_Y 90 ----NGS--TVNVGIHP-SKVVVTKLKLDK 112 (150)
T ss_dssp ----TSC--EEECCBCG-GGEEEEECCCCS
T ss_pred ----CCC--EEecccch-HHEEEEcccCCh
Confidence 464 78999999 999999999875
No 12
>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V
Probab=98.48 E-value=7.2e-08 Score=78.73 Aligned_cols=58 Identities=19% Similarity=0.166 Sum_probs=46.7
Q ss_pred CCceecce-EEEeecCCCccceEEEE------------eceee-ccc-cccccceeeecccchhcc--ccccccc
Q psy5495 1 MSWYCGGG-FLLIGNNKGRTGVFGIF------------NNTYN-MYL-EFEYPKIVNEYERKYATG--CFSDIEN 58 (273)
Q Consensus 1 ~~~~~gd~-~~l~g~d~gkqg~v~~~------------n~~~~-~~~-~~~~~~~~~~~e~pl~~~--~l~d~e~ 58 (273)
|..++||+ +||+|+|+||+|+|++| |...+ +.. .....|.++..|+||-+. +|+|...
T Consensus 14 m~IkkGD~V~Vi~GkdKGk~GkV~~V~~~~~~V~VEGvN~~kkh~kp~~~~~~Ggiv~~e~PIh~SNV~lv~p~~ 88 (115)
T 2zjr_R 14 LHFKKGDTVIVLSGKHKGQTGKVLLALPRDQKVVVEGVNVITKNVKPSMTNPQGGQEQRELALHASKVALVDPET 88 (115)
T ss_dssp CSSCTTSEEECCSSSSTTCEEEEEEEETTTTEEEESSSCBCCCCCCTTSSSCCCCCCCBCCCBCSSSEECBSSSS
T ss_pred CcccCCCEEEEeEcCCCCcEEEEEEEECCCCEEEEeCcEeEEEecCCCcCCCCCCEEEEEcccCHHHEEEEeccC
Confidence 56789999 99999999999999999 55544 322 235679999999999885 8988554
No 13
>2ftc_N Mitochondrial ribosomal protein L24; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_N
Probab=98.44 E-value=1.4e-07 Score=74.83 Aligned_cols=53 Identities=19% Similarity=0.246 Sum_probs=44.6
Q ss_pred cce-EEEeecCCCccceEEEE------------eceee-ccccccccceeeecccchhcc--ccccccc
Q psy5495 6 GGG-FLLIGNNKGRTGVFGIF------------NNTYN-MYLEFEYPKIVNEYERKYATG--CFSDIEN 58 (273)
Q Consensus 6 gd~-~~l~g~d~gkqg~v~~~------------n~~~~-~~~~~~~~~~~~~~e~pl~~~--~l~d~e~ 58 (273)
||+ +||+|+|+||+|+|.+| |...+ +..+....|.++..||||-+. +|+|...
T Consensus 1 GD~V~Vi~GkdKGk~GkV~~V~~~~~~ViVeGvN~~kkh~kp~~~~~Ggiv~~e~pIh~SNV~lv~p~~ 69 (96)
T 2ftc_N 1 GDTVEILEGKDAGKQGKVVQVIRQRNWVVVGGLNTHYRYIGKTMDYRGTMIPSEAPLLHRQVKLVDPMD 69 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEECCCCEEEEeCCEEEEEEcCCCCCCCCCEEEEecCcCHHHEEEEeCcC
Confidence 899 99999999999999999 76665 544447789999999999885 8888554
No 14
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ...
Probab=98.40 E-value=2e-07 Score=75.71 Aligned_cols=57 Identities=16% Similarity=-0.041 Sum_probs=46.2
Q ss_pred Cceecce-EEEeecCCCccceEEEE------------eceee-ccccc-cccceeeecccchhcc--ccccccc
Q psy5495 2 SWYCGGG-FLLIGNNKGRTGVFGIF------------NNTYN-MYLEF-EYPKIVNEYERKYATG--CFSDIEN 58 (273)
Q Consensus 2 ~~~~gd~-~~l~g~d~gkqg~v~~~------------n~~~~-~~~~~-~~~~~~~~~e~pl~~~--~l~d~e~ 58 (273)
.-.+||+ +||+|+|+||||+|.+| |.+.+ +..+. ...|.++..||||.+. +|+|...
T Consensus 6 ~IkkGD~V~Vi~GkdKGk~GkV~~V~~~~~~ViVEGvN~~kkh~kp~~~~~~Ggi~~~E~PIh~SNV~lv~p~~ 79 (110)
T 3v2d_Y 6 HVKKGDTVLVASGKYKGRVGKVKEVLPKKYAVIVEGVNIVKKAVRVSPKYPQGGFIEKEAPLHASKVRPICPAC 79 (110)
T ss_dssp SCCTTSEEEECSSTTTTCEEEEEEEEGGGTEEEETTSSEEEEECCSSSSSTTCCEEEEECCEEGGGEEEBCTTT
T ss_pred ccCCCCEEEEeEcCCCCeEeEEEEEECCCCEEEEeCEEEEEEEeCCCccCCCCCEEEEECCcCHHHeEEEcCcC
Confidence 4578999 99999999999999999 66554 43333 4689999999999996 8988554
No 15
>3r8s_U 50S ribosomal protein L24; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2j28_U* 3fik_U 3j19_U 2wwq_U 3oat_U* 3oas_U* 3ofd_U 3ofc_U 3ofr_U* 3ofz_U* 3og0_U 3ofq_U 3r8t_U 3i1n_U 1vs8_U 1vs6_U 1vt2_U 3i1p_U 3i1r_U 3i1t_U ...
Probab=98.28 E-value=3.8e-07 Score=73.17 Aligned_cols=57 Identities=16% Similarity=0.106 Sum_probs=46.0
Q ss_pred Cceecce-EEEeecCCCccceEEEE-----------eceee-ccccc--cccceeeecccchhcc--ccccccc
Q psy5495 2 SWYCGGG-FLLIGNNKGRTGVFGIF-----------NNTYN-MYLEF--EYPKIVNEYERKYATG--CFSDIEN 58 (273)
Q Consensus 2 ~~~~gd~-~~l~g~d~gkqg~v~~~-----------n~~~~-~~~~~--~~~~~~~~~e~pl~~~--~l~d~e~ 58 (273)
.-.+||+ +||+|+|+||+|+|.+| |...+ ...+. ...|-++..||||.+. +|+|...
T Consensus 3 ~IkkGD~V~Vi~GkdKGk~GkV~~V~~~~~ViVeGvN~~kkh~kp~~~~~~~Ggi~~~E~PIh~SNV~lv~p~~ 76 (102)
T 3r8s_U 3 KIRRDDEVIVLTGKDKGKRGKVKNVLSSGKVIVEGINLVKKHQKPVPALNQPGGIVEKEAAIQVSNVAIFNAAT 76 (102)
T ss_dssp SSCSSCEEEECSSSSTTCEEEEEEEETTTEEEETTCSEEEEEECCCSSSSCSCEEEEEECCEEGGGEEEEETTT
T ss_pred CccCCCEEEEeEcCCCCeeeEEEEEEeCCEEEEeCeEEEEeccccCcccCCCCCEEEEECCcCHHHEEEEcCcC
Confidence 3578999 99999999999999999 55544 32232 6789999999999985 8988554
No 16
>3bbo_W Ribosomal protein L24; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=98.27 E-value=1.9e-07 Score=82.21 Aligned_cols=58 Identities=16% Similarity=0.087 Sum_probs=46.8
Q ss_pred CCceecce-EEEeecCCCccceEEEE------------eceee-ccc-cccccceeeecccchhcc--ccccccc
Q psy5495 1 MSWYCGGG-FLLIGNNKGRTGVFGIF------------NNTYN-MYL-EFEYPKIVNEYERKYATG--CFSDIEN 58 (273)
Q Consensus 1 ~~~~~gd~-~~l~g~d~gkqg~v~~~------------n~~~~-~~~-~~~~~~~~~~~e~pl~~~--~l~d~e~ 58 (273)
|..++||+ +||.|+|+||+|+|.+| |...+ +.. .....|.++..|+||-+. +|+|...
T Consensus 67 mkIkKGD~V~VIaGkDKGK~GkVl~V~~k~~rViVEGVN~vkKH~Kp~~~~~~GgIv~kEaPIhiSNV~Lvdp~~ 141 (191)
T 3bbo_W 67 RHVKVGDTVKVISGGEKGKIGEISKIHKHNSTVIIKDLNFKTKHVKSKEEGEQGQIIKIEAAIHSSNVMLILKEQ 141 (191)
T ss_dssp CCSCCSSCEEECSSSSTTCCCSCCCCCSSSCCCCCSSCCCCCCBCCSCCSSSCCBSSCCCCCCCGGGEEECSSSS
T ss_pred CeeecCCEEEEeecCCCCceEEEEEEECCCCEEEEeCCEEEEEecCCcccCCCCCEEEEecCcCHHHeEEEeccC
Confidence 45889999 99999999999999999 65544 333 245689999999999885 8888544
No 17
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=97.68 E-value=3.9e-05 Score=54.39 Aligned_cols=36 Identities=28% Similarity=0.281 Sum_probs=33.3
Q ss_pred cceecCCeEEEeecCCCCceeEEEEEEccCCEEEEc
Q psy5495 153 WSIFKGDRVEILVGKDKGKQGYVIQIFQEINSVIVE 188 (273)
Q Consensus 153 w~I~kGD~V~VI~GkDKGK~GkV~~V~r~~n~ViVE 188 (273)
..+..||+|.|++|+++|..|+|.+|++++.++.|.
T Consensus 3 ~~~~~Gd~V~V~~Gpf~g~~g~v~~v~~~k~~v~V~ 38 (58)
T 1nz9_A 3 VAFREGDQVRVVSGPFADFTGTVTEINPERGKVKVM 38 (58)
T ss_dssp CSCCTTCEEEECSGGGTTCEEEEEEEETTTTEEEEE
T ss_pred cccCCCCEEEEeecCCCCcEEEEEEEcCCCCEEEEE
Confidence 457899999999999999999999999998899887
No 18
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=97.47 E-value=3.6e-05 Score=63.37 Aligned_cols=53 Identities=15% Similarity=0.123 Sum_probs=38.2
Q ss_pred ceecce-EEEeecCCCccceEEEEece-ee-----ccccccccceeeecccchhcc--ccccccc
Q psy5495 3 WYCGGG-FLLIGNNKGRTGVFGIFNNT-YN-----MYLEFEYPKIVNEYERKYATG--CFSDIEN 58 (273)
Q Consensus 3 ~~~gd~-~~l~g~d~gkqg~v~~~n~~-~~-----~~~~~~~~~~~~~~e~pl~~~--~l~d~e~ 58 (273)
..+||+ +|+.|+|+||+|+|.+|+.. ++ ++..+. .| ...|+|+-.. +|+|...
T Consensus 46 IkkGD~V~Vi~GkdKGk~GkV~~V~~k~~~V~VEgvn~~k~-~G--~~~e~pIh~SNV~l~~~~~ 107 (121)
T 3j21_U 46 VRVGDKVRIMRGDYKGHEGKVVEVDLKRYRIYVEGATLRKT-NG--TEVFYPIHPSNVMIIELNL 107 (121)
T ss_dssp CCSSSEEEECSSSCSSEEEEEEEEETTTTEEEETTCEEECS-SS--CEEECCBCGGGEEEEECCC
T ss_pred cccCCEEEEeecCCCCcEeEEEEEEecCCEEEEeCeEEEec-CC--cEEEcccCHHHeEEEcCcc
Confidence 468999 99999999999999999321 11 111111 34 4789999885 8888665
No 19
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=97.41 E-value=4.9e-05 Score=64.40 Aligned_cols=59 Identities=17% Similarity=0.135 Sum_probs=41.2
Q ss_pred CCceecce-EEEeecCCCcc-ceEEEEece-ee-----ccccccccceeeecccchhcc--cccccccCCCCC
Q psy5495 1 MSWYCGGG-FLLIGNNKGRT-GVFGIFNNT-YN-----MYLEFEYPKIVNEYERKYATG--CFSDIENEDKDT 63 (273)
Q Consensus 1 ~~~~~gd~-~~l~g~d~gkq-g~v~~~n~~-~~-----~~~~~~~~~~~~~~e~pl~~~--~l~d~e~~~kdt 63 (273)
|...+||+ +||.|+|+||+ |+|++|+.. ++ ++..+ -.| +..|+|+-.. .|+|... .|+|
T Consensus 47 ~~IkkGD~V~Vi~GkdKGk~~GkV~~V~~k~~~V~VEgvn~~K-p~G--~~~e~PIh~SNV~lv~~~~-~k~~ 115 (145)
T 2zkr_t 47 MPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREK-ANG--TTVHVGIHPSKVVITRLKL-DKDR 115 (145)
T ss_dssp CBCCTTCEEEECSSTTTTCCSEEEEEEETTTTEEEETTCEEEC-SSC--CEEECCBCGGGEEECC-CC-CHHH
T ss_pred cccCCCCEEEEeecCCCCcceeEEEEEECCCCEEEEeeeEeEc-CCC--ceEEeccCHHHEEEEcCcC-CchH
Confidence 34679999 99999999999 999999211 11 22111 126 8999998774 8888666 4555
No 20
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...
Probab=96.93 E-value=0.00025 Score=58.32 Aligned_cols=59 Identities=20% Similarity=0.179 Sum_probs=42.1
Q ss_pred ceecce-EEEeecCCCccceEEEEece-ee-----ccccccccceeeecccchhcc--cccccccCCCCChh
Q psy5495 3 WYCGGG-FLLIGNNKGRTGVFGIFNNT-YN-----MYLEFEYPKIVNEYERKYATG--CFSDIENEDKDTKE 65 (273)
Q Consensus 3 ~~~gd~-~~l~g~d~gkqg~v~~~n~~-~~-----~~~~~~~~~~~~~~e~pl~~~--~l~d~e~~~kdt~~ 65 (273)
..+||+ +|+.|+|+|++|+|++|+.. ++ ++..+ -.|. ..|+|+-.. +|+|... .|.|-.
T Consensus 43 IkkGD~V~Vi~G~dKGk~GkV~~V~~k~~~V~VEgvn~kK-~~Gg--~~e~pIh~SNV~i~~~~~-~k~~Rv 110 (120)
T 1vq8_T 43 VNAGDTVEVLRGDFAGEEGEVINVDLDKAVIHVEDVTLEK-TDGE--EVPRPLDTSNVRVTDLDL-EDEKRE 110 (120)
T ss_dssp CCTTCEEEECSSTTTTCEEEEEEEETTTTEEEETTCEEEC-SSSC--EEECCBCGGGEEEEECCC-CCHHHH
T ss_pred ccCCCEEEEEecCCCCCEEEEEEEECCCCEEEEeCeEeEc-CCCC--EEEeeechHHEEEEeccC-CCchhh
Confidence 468999 99999999999999999311 12 32222 3455 789999774 8888766 455543
No 21
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.86 E-value=0.00041 Score=49.91 Aligned_cols=37 Identities=19% Similarity=0.246 Sum_probs=30.1
Q ss_pred ccceecCCeEEEeecCCCCceeEEEEEEccCCEEEEc
Q psy5495 152 DWSIFKGDRVEILVGKDKGKQGYVIQIFQEINSVIVE 188 (273)
Q Consensus 152 ~w~I~kGD~V~VI~GkDKGK~GkV~~V~r~~n~ViVE 188 (273)
...+.+||.|+|+.|+++|-.|+|.+|+.++=+|.|.
T Consensus 5 ~~~f~~GD~V~V~~Gpf~g~~G~V~evd~e~v~V~v~ 41 (59)
T 2e6z_A 5 SSGFQPGDNVEVCEGELINLQGKILSVDGNKITIMPK 41 (59)
T ss_dssp CSSCCTTSEEEECSSTTTTCEEEECCCBTTEEEEEEC
T ss_pred cccCCCCCEEEEeecCCCCCEEEEEEEeCCEEEEEEE
Confidence 4567899999999999999999999999763334443
No 22
>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L 2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 4b6a_Y 1s1i_U 3izc_Y 3izs_Y 3jyw_U
Probab=96.61 E-value=0.00065 Score=56.43 Aligned_cols=55 Identities=15% Similarity=0.189 Sum_probs=38.6
Q ss_pred eecce-EEEeecCCCccceEEEEece-ee-----ccccccccceeeecccchhcc--cccccccCCCC
Q psy5495 4 YCGGG-FLLIGNNKGRTGVFGIFNNT-YN-----MYLEFEYPKIVNEYERKYATG--CFSDIENEDKD 62 (273)
Q Consensus 4 ~~gd~-~~l~g~d~gkqg~v~~~n~~-~~-----~~~~~~~~~~~~~~e~pl~~~--~l~d~e~~~kd 62 (273)
-+||. +|+.|+|+|++|+|++|..- ++ ++..+. .|+ .-|+|+-.. +|+|... +||
T Consensus 51 kkgD~V~Vi~GkdKGk~GkV~~V~~kk~~V~VEgVn~~K~-~G~--~~e~pIh~SNV~i~~~~~-dk~ 114 (127)
T 3u5e_Y 51 RRDDEVLVVRGSKKGQEGKISSVYRLKFAVQVDKVTKEKV-NGA--SVPINLHPSKLVITKLHL-DKD 114 (127)
T ss_dssp CTTCEEEECSSTTTTCEEEEEEEEGGGTEEEEETCEEECS-SSC--EEECCBCGGGEEEEECCC-CHH
T ss_pred cCCCEEEEeecCCCCccceEEEEECCCCEEEEeCeEEECC-CCc--EEEcccchHHEEEEcccc-CcH
Confidence 47999 99999999999999999332 22 222221 243 668999775 7887666 444
No 23
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=96.60 E-value=0.0021 Score=53.06 Aligned_cols=60 Identities=22% Similarity=0.274 Sum_probs=47.1
Q ss_pred ccceecCCeEEEeecCCCCceeEEEEEEccCCEEEEcCeeeEEeecCCCCceEEEeeecccCCCeeeeCCC
Q psy5495 152 DWSIFKGDRVEILVGKDKGKQGYVIQIFQEINSVIVEGLNTYLKKMGDSQFIIKQEAPLLVTNEVALVDPS 222 (273)
Q Consensus 152 ~w~I~kGD~V~VI~GkDKGK~GkV~~V~r~~n~ViVEGvN~~~k~v~~~Ggii~~EaPIhvtSNV~LVdP~ 222 (273)
...+..||.|.|+.|+++|-.|.|.+|+.+++++.|.-.-. |. +.+..|+. |+|..++.+
T Consensus 89 ~~~~~~Gd~VrI~~Gpf~g~~g~V~~vd~~k~~v~V~v~~~--------gr--~tpvel~~-~~v~~i~~~ 148 (152)
T 3p8b_B 89 VSGLEPGDLVEVIAGPFKGQKAKVVKIDESKDEVVVQFIDA--------IV--PIPVTIKG-DYVRLISKL 148 (152)
T ss_dssp TTTCCTTCEEEECSSTTTTCEEEEEEEETTTTEEEEEESSC--------SS--CCEEEEEG-GGEEEEECC
T ss_pred cccCCCCCEEEEeeecCCCCEEEEEEEeCCCCEEEEEEEec--------ce--eEEEEECH-HHEEEeccc
Confidence 35678999999999999999999999999999988872111 32 33566777 889888753
No 24
>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_S 4a1c_S 4a1e_S
Probab=96.43 E-value=0.0011 Score=55.68 Aligned_cols=52 Identities=10% Similarity=0.143 Sum_probs=37.0
Q ss_pred eecce-EEEeecCCCccceEEEEece-ee-----ccccccccceeeecccchhcc--ccccccc
Q psy5495 4 YCGGG-FLLIGNNKGRTGVFGIFNNT-YN-----MYLEFEYPKIVNEYERKYATG--CFSDIEN 58 (273)
Q Consensus 4 ~~gd~-~~l~g~d~gkqg~v~~~n~~-~~-----~~~~~~~~~~~~~~e~pl~~~--~l~d~e~ 58 (273)
-+||. +|+.|+|+|++|+|++|..- ++ ++..+. .|+ .-|+|+-.. +|+|...
T Consensus 50 kkgD~V~Vi~GkdKGk~GkV~~V~~kk~~V~VEgVn~~K~-~G~--~~e~pIh~SNV~i~~~k~ 110 (135)
T 4a17_S 50 RKDDEVLIVRGKFKGNKGKVTQVYRKKWAIHVEKISKNKL-NGA--PYQIPLSASQLVLTKLKL 110 (135)
T ss_dssp CTTCEEEECSSTTTTCEEEEEEEETTTTEEEETTCCEEET-TTE--EECCCBCGGGEEEEECCC
T ss_pred cCCCEEEEeecCCCCceeeEEEEEcCCCEEEEeCeEEEcC-CCC--EEEcccchHHEEEEcccC
Confidence 47999 99999999999999999321 22 222221 243 669999875 7877665
No 25
>3iz5_Y 60S ribosomal protein L26 (L24P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Y
Probab=96.35 E-value=0.0017 Score=55.28 Aligned_cols=52 Identities=12% Similarity=0.042 Sum_probs=37.1
Q ss_pred eecce-EEEeecCCCccceEEEEece-ee-----ccccccccceeeecccchhcc--ccccccc
Q psy5495 4 YCGGG-FLLIGNNKGRTGVFGIFNNT-YN-----MYLEFEYPKIVNEYERKYATG--CFSDIEN 58 (273)
Q Consensus 4 ~~gd~-~~l~g~d~gkqg~v~~~n~~-~~-----~~~~~~~~~~~~~~e~pl~~~--~l~d~e~ 58 (273)
-+||. +|+.|+|+||+|+|++|+.. ++ ++..+. .|+ .-|+|+-.. .|+|...
T Consensus 50 kKGD~V~Vi~GkdKGk~GkVl~V~~kk~~V~VEGVN~~K~-~G~--~~eapIh~SNV~i~~~k~ 110 (150)
T 3iz5_Y 50 RKDDEVQVVRGSYKGREGKVVQVYRRRWVIHVERITREKV-NGS--TVNVGIHPSKVVVTKLKL 110 (150)
T ss_dssp CSSSEEEECSSTTTTCEEEEEEEETTTTEEEETTCEEECT-TSC--EEECCBCGGGEEEEECCC
T ss_pred CCCCEEEEeecCCCCccceEEEEEcCCCEEEEeCcEEEeC-CCC--EEecccchHHEEEEcccC
Confidence 47999 99999999999999999432 22 222222 243 569999885 7887666
No 26
>2jvv_A Transcription antitermination protein NUSG; transcription factor, transcription regulation, transcription termination; NMR {Escherichia coli} PDB: 2k06_A 2kvq_G
Probab=96.34 E-value=0.0035 Score=52.94 Aligned_cols=38 Identities=18% Similarity=0.075 Sum_probs=33.8
Q ss_pred cccceecCCeEEEeecCCCCceeEEEEEEccCCEEEEc
Q psy5495 151 KDWSIFKGDRVEILVGKDKGKQGYVIQIFQEINSVIVE 188 (273)
Q Consensus 151 ~~w~I~kGD~V~VI~GkDKGK~GkV~~V~r~~n~ViVE 188 (273)
....+..||+|.|+.|+++|-.|.|.+|+.+++++.|.
T Consensus 124 ~~~~~~~Gd~V~V~~GPf~g~~G~v~~v~~~k~r~~V~ 161 (181)
T 2jvv_A 124 PKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVS 161 (181)
T ss_dssp CCCCCCTTEEEEECSSTTTTEEEEEEEEETTTTEEEEE
T ss_pred ccccCCCCCEEEEeccCCCCcEEEEEEEeCCCCEEEEE
Confidence 34577899999999999999999999999988888775
No 27
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=96.14 E-value=0.0043 Score=46.68 Aligned_cols=39 Identities=18% Similarity=0.452 Sum_probs=30.4
Q ss_pred cceecCCeEEEeecCCCCceeEEEEEEccCCEEEEcCeee
Q psy5495 153 WSIFKGDRVEILVGKDKGKQGYVIQIFQEINSVIVEGLNT 192 (273)
Q Consensus 153 w~I~kGD~V~VI~GkDKGK~GkV~~V~r~~n~ViVEGvN~ 192 (273)
-.|+.||.|.||+|+++|..|.|.+|.... -+++-+.++
T Consensus 16 K~F~~GDHVkVi~G~~~getGlVV~v~~d~-v~v~SD~t~ 54 (69)
T 2do3_A 16 KYFKMGDHVKVIAGRFEGDTGLIVRVEENF-VILFSDLTM 54 (69)
T ss_dssp SSCCTTCEEEESSSTTTTCEEEEEEECSSC-EEEEESSSC
T ss_pred eeccCCCeEEEeccEEcCceEEEEEEeCCE-EEEEeCCCC
Confidence 468899999999999999999999998542 234444443
No 28
>2ckk_A KIN17; beta barrel, ribosomal protein, ribonucleoprotein, nuclear protein; 1.45A {Homo sapiens}
Probab=95.32 E-value=0.017 Score=47.37 Aligned_cols=40 Identities=23% Similarity=0.357 Sum_probs=33.8
Q ss_pred CcccCcccceecCCeEEEeecCCCCceeEEEEEEccCCEEEEc
Q psy5495 146 PIEPIKDWSIFKGDRVEILVGKDKGKQGYVIQIFQEINSVIVE 188 (273)
Q Consensus 146 ~vePi~~w~I~kGD~V~VI~GkDKGK~GkV~~V~r~~n~ViVE 188 (273)
.+|++ .+ .+||+|.|+.|+++|..|++++++.++..++|+
T Consensus 65 ~LETV--iP-~~g~~V~Iv~G~~rG~~g~L~~id~~~~~~~V~ 104 (127)
T 2ckk_A 65 HLETV--IP-APGKRILVLNGGYRGNEGTLESINEKTFSATIV 104 (127)
T ss_dssp GEEEC--CC-CTTCEEEECSSTTTTCEEEEEEEEGGGTEEEEE
T ss_pred HcEEe--cC-CCCCEEEEEecccCCcEEEEEEEeCCCcEEEEE
Confidence 45555 23 689999999999999999999999997777776
No 29
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=94.14 E-value=0.047 Score=51.58 Aligned_cols=37 Identities=24% Similarity=0.284 Sum_probs=33.2
Q ss_pred ccceecCCeEEEeecCCCCceeEEEEEEccCCEEEEc
Q psy5495 152 DWSIFKGDRVEILVGKDKGKQGYVIQIFQEINSVIVE 188 (273)
Q Consensus 152 ~w~I~kGD~V~VI~GkDKGK~GkV~~V~r~~n~ViVE 188 (273)
...+..||+|.|+.|+++|-.|.|.+|+.+++++.|.
T Consensus 296 ~~~f~~Gd~VrV~~GPF~G~~G~V~evd~ek~rv~V~ 332 (352)
T 2xhc_A 296 ELGFKVGDMVKIISGPFEDFAGVIKEIDPERQELKVN 332 (352)
T ss_dssp -CCCCTTCEEEECSSTTTTCEEEEEEEETTTTEEEEE
T ss_pred cccCCCCCEEEEeccCCCCcEEEEEEEcCCCCEEEEE
Confidence 4567899999999999999999999999998888875
No 30
>1m1h_A Transcription antitermination protein NUSG; transcription termination, RNP motif, immunoglobulin fold, nucleic acid interaction; 1.95A {Aquifex aeolicus} SCOP: b.114.1.1 d.58.42.1 PDB: 1m1g_A 1npp_A 1npr_A
Probab=93.22 E-value=0.016 Score=52.40 Aligned_cols=37 Identities=24% Similarity=0.277 Sum_probs=0.0
Q ss_pred ccceecCCeEEEeecCCCCceeEEEEEEccCCEEEEc
Q psy5495 152 DWSIFKGDRVEILVGKDKGKQGYVIQIFQEINSVIVE 188 (273)
Q Consensus 152 ~w~I~kGD~V~VI~GkDKGK~GkV~~V~r~~n~ViVE 188 (273)
...+..||+|.|++|+++|-.|+|.+|+++++++.|.
T Consensus 192 ~~~~~~Gd~V~I~~Gpf~g~~G~v~ev~~~k~~~~V~ 228 (248)
T 1m1h_A 192 KVEFEKGDQVRVIEGPFMNFTGTVEEVHPEKRKLTVM 228 (248)
T ss_dssp -------------------------------------
T ss_pred cccCCCCCEEEEeccCCCCcEEEEEEEeCCCCEEEEE
Confidence 5567899999999999999999999999998887765
No 31
>2joy_A 50S ribosomal protein L14E; protein solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: b.34.5.7 PDB: 2kds_A
Probab=88.73 E-value=0.24 Score=38.64 Aligned_cols=36 Identities=25% Similarity=0.387 Sum_probs=31.4
Q ss_pred eecCCeEEEeecCCCCceeEEEEEEccCCEEEEcCee
Q psy5495 155 IFKGDRVEILVGKDKGKQGYVIQIFQEINSVIVEGLN 191 (273)
Q Consensus 155 I~kGD~V~VI~GkDKGK~GkV~~V~r~~n~ViVEGvN 191 (273)
+..|-.|.+++|+|+||.-.|+++. +.|.|.|.|-.
T Consensus 4 v~~GrVv~~~~Gr~~Gk~~VIv~~i-D~~~vLV~gp~ 39 (96)
T 2joy_A 4 IEVGRICVKVKGREAGSKCVIVDII-DDNFVLVTGPK 39 (96)
T ss_dssp SSTTEEEECSSSSTTCCEEEEEEEC-SSSCEEEECCT
T ss_pred cccCEEEEEeecCCCCCEEEEEEEe-CCCEEEEECCc
Confidence 5679999999999999999999997 45789998864
No 32
>3izc_N 60S ribosomal protein RPL14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_N 3o58_N 3o5h_N 3u5e_M 3u5i_M 4b6a_M
Probab=87.60 E-value=0.34 Score=40.64 Aligned_cols=36 Identities=25% Similarity=0.471 Sum_probs=31.4
Q ss_pred eecCCeEEEeecCCCCceeEEEEEEccCCEEEEcCee
Q psy5495 155 IFKGDRVEILVGKDKGKQGYVIQIFQEINSVIVEGLN 191 (273)
Q Consensus 155 I~kGD~V~VI~GkDKGK~GkV~~V~r~~n~ViVEGvN 191 (273)
+..|-.|.|+.|+|.|+...|+.|+.+ |+|+|+|-.
T Consensus 15 ve~GrVV~i~~Gr~aGk~avIV~iiD~-~rVLVDGp~ 50 (138)
T 3izc_N 15 VEVGRVVLIKKGQSAGKLAAIVEIIDQ-KKVLIDGPK 50 (138)
T ss_dssp SSTTEEEECCSCSSSCCEEEEEEECSS-SEEEEECSS
T ss_pred cccCeEEEEeeCCCCCCEEEEEEEecC-CEEEEEcCC
Confidence 357888899999999999999999864 899999974
No 33
>3j21_5 50S ribosomal protein L14E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=86.62 E-value=0.36 Score=37.00 Aligned_cols=36 Identities=28% Similarity=0.469 Sum_probs=31.2
Q ss_pred eecCCeEEEeecCCCCceeEEEEEEccCCEEEEcCee
Q psy5495 155 IFKGDRVEILVGKDKGKQGYVIQIFQEINSVIVEGLN 191 (273)
Q Consensus 155 I~kGD~V~VI~GkDKGK~GkV~~V~r~~n~ViVEGvN 191 (273)
+..|-.|.+++|+|+||...|+++..+ |.|.|.|-.
T Consensus 4 ~~~Grvv~~~~Gr~~Gk~~vIv~iiD~-~~vlV~g~~ 39 (83)
T 3j21_5 4 IDVGRIAVVIAGRRAGQKVVVVDIIDK-NFVLVTGAG 39 (83)
T ss_dssp CCTTEEEECSSSSSSCCCEEEEEECSS-SCEEEECCT
T ss_pred cccCEEEEEeecCCCCCEEEEEEEcCC-CEEEEECCc
Confidence 567889999999999999999999754 789998864
No 34
>3iz5_N 60S ribosomal protein L14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_N
Probab=86.36 E-value=0.37 Score=40.21 Aligned_cols=36 Identities=19% Similarity=0.365 Sum_probs=31.8
Q ss_pred eecCCeEEEeecCCCCceeEEEEEEccCCEEEEcCee
Q psy5495 155 IFKGDRVEILVGKDKGKQGYVIQIFQEINSVIVEGLN 191 (273)
Q Consensus 155 I~kGD~V~VI~GkDKGK~GkV~~V~r~~n~ViVEGvN 191 (273)
+..|-.|.|+.|+|.|+...|..|+-+ |+|+|+|..
T Consensus 7 vevGRVV~i~~Gr~aGk~avIV~iiD~-~rvLVdG~~ 42 (134)
T 3iz5_N 7 VEIGRVALVNYGKDYGRLVVIVDVVDQ-NRALVDAPD 42 (134)
T ss_dssp CCSSEEEECSCCSSSCCEEEEEEECSS-SEEEEEETT
T ss_pred cccCeEEEEeeCCCCCCEEEEEEEcCC-CeEEEeCCC
Confidence 457888999999999999999999864 799999976
No 35
>4a18_N RPL27, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_N 4a1b_N 4a1d_N
Probab=86.22 E-value=0.74 Score=38.88 Aligned_cols=41 Identities=24% Similarity=0.357 Sum_probs=35.2
Q ss_pred eecCCeEEEeecCCCCceeEEEEEEccC------CEEEEcCeeeEEe
Q psy5495 155 IFKGDRVEILVGKDKGKQGYVIQIFQEI------NSVIVEGLNTYLK 195 (273)
Q Consensus 155 I~kGD~V~VI~GkDKGK~GkV~~V~r~~------n~ViVEGvN~~~k 195 (273)
+..|=.|.|++|++.|+...|++++.+. +.++|.|+...-+
T Consensus 5 ~kpGrVvivl~Gr~aGkkaVIvk~iD~gt~d~~y~~aLVaGIdryP~ 51 (144)
T 4a18_N 5 LKYGRVVILLQGRFAGKKAVIVKSSEDGTKDRKFGHVLVAGVERSPK 51 (144)
T ss_dssp CCTTEEEEECSSTTTTCEEEEEEEESSCCSSCCSCEEEEEEEEECCC
T ss_pred ccCCeEEEEecCCcCCCEEEEEEecCCCccCCccceEEEEecccCCc
Confidence 5678889999999999999999998764 7999999877533
No 36
>4a18_F RPL14; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_F 4a1b_F 4a1d_F 4adx_7
Probab=85.37 E-value=0.81 Score=37.81 Aligned_cols=36 Identities=31% Similarity=0.556 Sum_probs=31.0
Q ss_pred eecCCeEEEeecCCCCceeEEEEEEccCCEEEEcCee
Q psy5495 155 IFKGDRVEILVGKDKGKQGYVIQIFQEINSVIVEGLN 191 (273)
Q Consensus 155 I~kGD~V~VI~GkDKGK~GkV~~V~r~~n~ViVEGvN 191 (273)
+..|=.|.|..|++.||...|..|+-. |+|+|+|-.
T Consensus 7 vevGRVv~i~~G~~aGklavIVdIID~-nrvLVdGp~ 42 (126)
T 4a18_F 7 VQVGRVVYINYGADKGKLAVIVNIINQ-NRILIDGEH 42 (126)
T ss_dssp EETTEEEEECSSTTTTEEEEEEEEETT-TEEEEEETT
T ss_pred eecceEEEEccCCccCCEEEEEEEecC-CeEEEeCCC
Confidence 346777888899999999999999865 899999976
No 37
>4a18_E RPL6; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_E 4a1b_E 4a1d_E
Probab=80.58 E-value=2.3 Score=37.40 Aligned_cols=62 Identities=18% Similarity=0.331 Sum_probs=45.2
Q ss_pred ceecCCeEEEeecCCCCceeEEEEEEccCCEEEEcC---eeeEE-eecCCCCceEEEeeecccCCCeee
Q psy5495 154 SIFKGDRVEILVGKDKGKQGYVIQIFQEINSVIVEG---LNTYL-KKMGDSQFIIKQEAPLLVTNEVAL 218 (273)
Q Consensus 154 ~I~kGD~V~VI~GkDKGK~GkV~~V~r~~n~ViVEG---vN~~~-k~v~~~Ggii~~EaPIhvtSNV~L 218 (273)
.|..|..|+|++|++.||...+++... ++-++|-| +|-+. +.+. ..-++...--|++ |+|.+
T Consensus 44 si~pGtVlIiL~Gr~~GKrvV~LKql~-sgllLVtGP~~vn~vplrrvn-~~~vi~TstkvDi-s~vki 109 (191)
T 4a18_E 44 DIAPGTVLILLAGRFRGKRVVFLKQLK-SGLLLVTGPYKVNGVPLKRVN-QAYTLSTSTKVDL-TGVNT 109 (191)
T ss_dssp TCCTTEEEEECSSTTTTBEEEEEEECT-TSCEEEECCTTTSSCCSEEEC-GGGEEEEEEECCC-TTCCG
T ss_pred cccCCCEEEEeccccCCCEEEEEEecC-CCeEEEecCccccCCceEEEe-eeeEEeeeeEeec-ccccc
Confidence 567899999999999999999999975 57888888 33211 1110 1345667777888 88876
No 38
>2e70_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.93 E-value=2.5 Score=31.76 Aligned_cols=30 Identities=33% Similarity=0.325 Sum_probs=25.7
Q ss_pred cCCeEEEeecCCCCceeEEEEEEccCCEEEEc
Q psy5495 157 KGDRVEILVGKDKGKQGYVIQIFQEINSVIVE 188 (273)
Q Consensus 157 kGD~V~VI~GkDKGK~GkV~~V~r~~n~ViVE 188 (273)
.|-+|.|..|++||..|.|..+.... |-||
T Consensus 20 iGktV~I~kGpyKG~~GiVkd~t~~~--~RVE 49 (71)
T 2e70_A 20 IGQTVRISQGPYKGYIGVVKDATEST--ARVE 49 (71)
T ss_dssp TTSEEEECSSTTTTCEEEEEEECSSC--EEEE
T ss_pred CCCEEEEeccCCCCeEEEEEECCCCe--EEEE
Confidence 58899999999999999999997654 5555
No 39
>3izc_G 60S ribosomal protein RPL6 (L6E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_G 3o58_F 3o5h_F 3u5e_E 3u5i_E 4b6a_E
Probab=76.02 E-value=2 Score=37.37 Aligned_cols=63 Identities=21% Similarity=0.439 Sum_probs=45.6
Q ss_pred cceecCCeEEEeecCCCCceeEEEEEEccCCEEEEcC---eeeE-EeecCCCCceEEEeeecccCCCeee
Q psy5495 153 WSIFKGDRVEILVGKDKGKQGYVIQIFQEINSVIVEG---LNTY-LKKMGDSQFIIKQEAPLLVTNEVAL 218 (273)
Q Consensus 153 w~I~kGD~V~VI~GkDKGK~GkV~~V~r~~n~ViVEG---vN~~-~k~v~~~Ggii~~EaPIhvtSNV~L 218 (273)
-.|.+|..+++++|+++||.-.+++... +|-+.|-| +|-+ .+.+.+ .-++....-|++ |+|.+
T Consensus 32 ~Si~pGtvlIil~Gr~~GkrvVfLKql~-sglllVTGP~~lNgvplrR~~q-~~vIaTstkidi-s~vki 98 (176)
T 3izc_G 32 ASLVPGTVLILLAGRFRGKRVVYLKHLE-DNTLLISGPFKVNGVPLRRVNA-RYVIATSTKVSV-EGVNV 98 (176)
T ss_dssp HHCCCCSCEECCSSSSSCCCBEEEEESS-SSSEEEECCCSSSCCCCEEESS-SSCEECSCCCSS-SSCCC
T ss_pred ccCCCCCEEEEeccccCCCEEEEEEecC-CCeEEEecCceecCCcceeeec-ceEEeeeeeeec-ccccc
Confidence 3567899999999999999999999874 67888887 3332 122211 344566667888 88887
No 40
>3iz5_G 60S ribosomal protein L6 (L6E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_G
Probab=68.10 E-value=2.2 Score=38.24 Aligned_cols=62 Identities=16% Similarity=0.390 Sum_probs=45.4
Q ss_pred ceecCCeEEEeecCCCCceeEEEEEEccCCEEEEcCe---eeE-EeecCCCCceEEEeeecccCCCeee
Q psy5495 154 SIFKGDRVEILVGKDKGKQGYVIQIFQEINSVIVEGL---NTY-LKKMGDSQFIIKQEAPLLVTNEVAL 218 (273)
Q Consensus 154 ~I~kGD~V~VI~GkDKGK~GkV~~V~r~~n~ViVEGv---N~~-~k~v~~~Ggii~~EaPIhvtSNV~L 218 (273)
.|..|..+++++|++.||.-.++.+. ++|.+.|.|- |-+ .+.+.. .-++....-|++ |+|.+
T Consensus 74 si~pGtVlIil~Gr~~GKrvVfLkqL-~sgllLVtGP~~lNgVplrR~~q-k~viaTstkIdI-s~Vki 139 (219)
T 3iz5_G 74 TITPGTVLILLAGRYMGKRVVFLKQL-QSGLLLITGPFKINGVPIRRVNQ-AYVIATSTKVDI-SKVNV 139 (219)
T ss_dssp HCSCCSCEECSSSSSSCCEECEEEES-SSSSEEECCCCSSSCCCCEEESS-SSCEECSCCCSC-SSCCC
T ss_pred cccCCCEEEEeccccCCcEEEEEEec-CCCeEEEcCCccccCCccEEech-hhEEecceEeec-Ccccc
Confidence 56679999999999999999999987 4789999984 332 122211 334555667788 88887
No 41
>1qp2_A Protein (PSAE protein); mainly beta, roll, pleckstrin topology, SH3-like, electron T; NMR {Nostoc SP} SCOP: b.34.4.2 PDB: 1qp3_A
Probab=63.90 E-value=6 Score=29.74 Aligned_cols=38 Identities=26% Similarity=0.175 Sum_probs=30.3
Q ss_pred eecCCeEEEeecC--CCCceeEEEEEEccC----CEEEEcCeee
Q psy5495 155 IFKGDRVEILVGK--DKGKQGYVIQIFQEI----NSVIVEGLNT 192 (273)
Q Consensus 155 I~kGD~V~VI~Gk--DKGK~GkV~~V~r~~----n~ViVEGvN~ 192 (273)
|.+|+.|.|+.=. .-+.+|.|.+|+... --|..+++|.
T Consensus 2 i~rGs~VrIlr~eSywy~~vG~V~~Vd~~~~~ypV~VrFekvNy 45 (70)
T 1qp2_A 2 VQRGSKVRILRPESYWFQDVGTVASVDQSGIKYPVIVRFEKVNY 45 (70)
T ss_dssp CCTTCEEEECCTTSTTTTCEEEEEEECCSSCSCSEEEECSSCCS
T ss_pred cCCCCEEEEcCccceeecceeEEEEEeCCCcEeeEEEEeccccc
Confidence 7899999999865 578899999999864 2456677776
No 42
>2oug_A Transcriptional activator RFAH; transcription factor, virulence, transcription pausing, transcription elongation; 2.10A {Escherichia coli}
Probab=63.65 E-value=0.0094 Score=49.16 Aligned_cols=30 Identities=27% Similarity=0.223 Sum_probs=21.4
Q ss_pred cceecCCeEEEeecCCCCceeEEEEEEccC
Q psy5495 153 WSIFKGDRVEILVGKDKGKQGYVIQIFQEI 182 (273)
Q Consensus 153 w~I~kGD~V~VI~GkDKGK~GkV~~V~r~~ 182 (273)
-.+..||+|.|+.|+++|-.|.|.+++.++
T Consensus 108 ~~~~~Gd~V~V~~Gpf~g~~g~v~~v~~~k 137 (162)
T 2oug_A 108 ATPYPGDKVIITEGAFEGFQAIFTEPDGEA 137 (162)
T ss_dssp -------CTTHHHHHHHHHHHHTTCSSHHH
T ss_pred CCCCCCCEEEEcccCCCCcEEEEEEECCCC
Confidence 457799999999999999999999998764
No 43
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=60.14 E-value=4.6 Score=27.89 Aligned_cols=26 Identities=19% Similarity=0.148 Sum_probs=23.7
Q ss_pred ceecce-EEEeecCCCccceEEEEece
Q psy5495 3 WYCGGG-FLLIGNNKGRTGVFGIFNNT 28 (273)
Q Consensus 3 ~~~gd~-~~l~g~d~gkqg~v~~~n~~ 28 (273)
+-.||. .|+.|-.+|..|+|..+|.+
T Consensus 5 ~~~Gd~V~V~~Gpf~g~~g~v~~v~~~ 31 (58)
T 1nz9_A 5 FREGDQVRVVSGPFADFTGTVTEINPE 31 (58)
T ss_dssp CCTTCEEEECSGGGTTCEEEEEEEETT
T ss_pred cCCCCEEEEeecCCCCcEEEEEEEcCC
Confidence 347999 99999999999999999877
No 44
>3iz6_D 40S ribosomal protein S4 (S4E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=55.85 E-value=12 Score=34.28 Aligned_cols=39 Identities=18% Similarity=0.227 Sum_probs=32.4
Q ss_pred cccceecCCeEEEeecCCCCceeEEEEEEccC---CEEEEcC
Q psy5495 151 KDWSIFKGDRVEILVGKDKGKQGYVIQIFQEI---NSVIVEG 189 (273)
Q Consensus 151 ~~w~I~kGD~V~VI~GkDKGK~GkV~~V~r~~---n~ViVEG 189 (273)
...++..|-.+.|+.|+.-|.+|+|..+.+.. +.|.|++
T Consensus 171 d~ikfe~Gnl~mvtgG~n~GriG~I~~ie~~~gs~~iV~vkd 212 (265)
T 3iz6_D 171 DFIKFDVGNVVMVTGGRNTGRVGVIKNREKHKGSFETIHVED 212 (265)
T ss_dssp EEECCSTTCEEEECSSSSCSCEEEEEEEECCSSSCCEEEECC
T ss_pred eEEEccCCCEEEEEcCCcceEEEEEEEEEEecCCCcEEEEEE
Confidence 47888899999999999999999999998754 3455553
No 45
>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A
Probab=50.80 E-value=14 Score=24.40 Aligned_cols=17 Identities=24% Similarity=0.315 Sum_probs=14.2
Q ss_pred cccceecCCeEEEeecC
Q psy5495 151 KDWSIFKGDRVEILVGK 167 (273)
Q Consensus 151 ~~w~I~kGD~V~VI~Gk 167 (273)
.++.+++||.|.|+.-.
T Consensus 16 ~eLs~~~Gd~i~v~~~~ 32 (58)
T 1zuy_A 16 SELPLKKGDVIYITREE 32 (58)
T ss_dssp TBCCBCTTCEEEEEEEC
T ss_pred CcCCCCCCCEEEEEEec
Confidence 36889999999999754
No 46
>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A
Probab=47.11 E-value=11 Score=25.25 Aligned_cols=16 Identities=25% Similarity=0.322 Sum_probs=13.7
Q ss_pred cccceecCCeEEEeec
Q psy5495 151 KDWSIFKGDRVEILVG 166 (273)
Q Consensus 151 ~~w~I~kGD~V~VI~G 166 (273)
.++.+++||.|.|+.-
T Consensus 19 ~eLs~~~Gd~i~v~~~ 34 (59)
T 2g6f_X 19 DELSFSKGDVIHVTRV 34 (59)
T ss_dssp TBCCBCTTCEEEEEEE
T ss_pred CCcCCCCCCEEEEEEe
Confidence 3788999999999974
No 47
>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens}
Probab=46.65 E-value=11 Score=26.49 Aligned_cols=15 Identities=13% Similarity=0.257 Sum_probs=13.4
Q ss_pred ccceecCCeEEEeec
Q psy5495 152 DWSIFKGDRVEILVG 166 (273)
Q Consensus 152 ~w~I~kGD~V~VI~G 166 (273)
++.|++||.|.|+.-
T Consensus 19 eLsf~~Gd~i~v~~~ 33 (68)
T 2ew3_A 19 ELGFKEGDIITLTNQ 33 (68)
T ss_dssp BCCBCTTCEEEEEEE
T ss_pred ccCCCCCCEEEEEEe
Confidence 788999999999984
No 48
>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1
Probab=45.22 E-value=19 Score=23.77 Aligned_cols=17 Identities=18% Similarity=0.493 Sum_probs=14.2
Q ss_pred ccceecCCeEEEeecCC
Q psy5495 152 DWSIFKGDRVEILVGKD 168 (273)
Q Consensus 152 ~w~I~kGD~V~VI~GkD 168 (273)
++.+++||.|.|+.-.+
T Consensus 17 eLs~~~Gd~i~v~~~~~ 33 (58)
T 1zuu_A 17 EITITPGDKISLVARDT 33 (58)
T ss_dssp BCCBCTTCCEEEEECCS
T ss_pred cccCCCCCEEEEeEcCC
Confidence 78899999999997543
No 49
>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A
Probab=44.52 E-value=13 Score=24.75 Aligned_cols=16 Identities=25% Similarity=0.412 Sum_probs=13.7
Q ss_pred cccceecCCeEEEeec
Q psy5495 151 KDWSIFKGDRVEILVG 166 (273)
Q Consensus 151 ~~w~I~kGD~V~VI~G 166 (273)
.++.+.+||.|.|+.-
T Consensus 16 ~eLs~~~Gd~i~v~~~ 31 (58)
T 1uti_A 16 DELGFRSGEVVEVLDS 31 (58)
T ss_dssp TBCCBCTTCEEEEEEC
T ss_pred CCCCCCCCCEEEEEEE
Confidence 3788999999999974
No 50
>3kbg_A 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.75A {Thermoplasma acidophilum}
Probab=44.25 E-value=19 Score=31.99 Aligned_cols=38 Identities=18% Similarity=0.218 Sum_probs=33.0
Q ss_pred cccceecCCeEEEeecCCCCceeEEEEEEccC----CEEEEc
Q psy5495 151 KDWSIFKGDRVEILVGKDKGKQGYVIQIFQEI----NSVIVE 188 (273)
Q Consensus 151 ~~w~I~kGD~V~VI~GkDKGK~GkV~~V~r~~----n~ViVE 188 (273)
...++..|-.+.|+.|+.-|..|+|..+.+.. +.|.|+
T Consensus 135 d~ikf~~G~l~mvtgG~n~GriG~I~~ie~~~gs~~~iV~v~ 176 (213)
T 3kbg_A 135 EIIKMQPGNKAYITAGSHVNQTGTISKIEAKEGSSANLVHFQ 176 (213)
T ss_dssp EEECCSTTCEEEECSSTTTTCEEEEEEECCCSCC--CEEEET
T ss_pred eEEEcCCCCEEEEECCCcceEEEEEEEEEEccCCCCCEEEEE
Confidence 47788999999999999999999999998642 568887
No 51
>2jz2_A SSL0352 protein; SH3-like, synechocystis SP. PCC 6803, targe PSI, protein structure initiative, northeast structural GEN consortium, NESG; NMR {Synechocystis SP} PDB: 3c4s_A
Probab=43.97 E-value=28 Score=25.82 Aligned_cols=40 Identities=23% Similarity=0.165 Sum_probs=35.2
Q ss_pred eecCCeEEEeecC--CCCceeEEEEEEccCCEEEEcCeeeEE
Q psy5495 155 IFKGDRVEILVGK--DKGKQGYVIQIFQEINSVIVEGLNTYL 194 (273)
Q Consensus 155 I~kGD~V~VI~Gk--DKGK~GkV~~V~r~~n~ViVEGvN~~~ 194 (273)
|.+|-.|.|+.-. .-|-+|.|.+|...+--|+.||-|.-+
T Consensus 2 ilPG~~V~V~np~~~Yy~y~G~VQRvsdgkaaVLFEGGnWDK 43 (66)
T 2jz2_A 2 IFPGATVRVTNVDDTYYRFEGLVQRVSDGKAAVLFENGNWDK 43 (66)
T ss_dssp CCTTCEEEECCTTSTTBTCEEEEEEEETTEEEEEEESSSCEE
T ss_pred ccCCCEEEEeCCCCcccceeEEEEEecCCcEEEEecCCCcee
Confidence 6789999999875 679999999999999999999988853
No 52
>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=43.30 E-value=16 Score=24.62 Aligned_cols=15 Identities=27% Similarity=0.401 Sum_probs=13.3
Q ss_pred ccceecCCeEEEeec
Q psy5495 152 DWSIFKGDRVEILVG 166 (273)
Q Consensus 152 ~w~I~kGD~V~VI~G 166 (273)
++.+++||.|.|+.-
T Consensus 21 eLs~~~Gd~i~v~~~ 35 (62)
T 1k4u_S 21 DLEFQEGDIILVLSK 35 (62)
T ss_dssp BCCBCSSCEEEEEEE
T ss_pred CccCCCCCEEEEEEe
Confidence 788999999999974
No 53
>2xzm_W 40S ribosomal protein S4; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_W
Probab=43.27 E-value=32 Score=31.42 Aligned_cols=39 Identities=18% Similarity=0.199 Sum_probs=31.5
Q ss_pred cccceecCCeEEEeecCCCCceeEEEEEEccC---CEEEEcC
Q psy5495 151 KDWSIFKGDRVEILVGKDKGKQGYVIQIFQEI---NSVIVEG 189 (273)
Q Consensus 151 ~~w~I~kGD~V~VI~GkDKGK~GkV~~V~r~~---n~ViVEG 189 (273)
...++..|-.+.|..|+.-|.+|+|.++.+.. |.|.|++
T Consensus 173 d~ikfe~G~l~mvtgG~n~GriG~I~~~e~~~gs~~iV~vkd 214 (260)
T 2xzm_W 173 NFAHLESGNVCYIQQGNNIGRVGIIQHIEKHQGSFDICHVKD 214 (260)
T ss_dssp CCCBCCSSCEEEECSSTTTTCEEEEEEEECCCSSCCEEEEEC
T ss_pred eEEEecCCCEEEEECCccceeEEEEEEEEecCCCCcEEEEEe
Confidence 36788999999999999999999999876553 4566653
No 54
>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A
Probab=42.92 E-value=14 Score=24.47 Aligned_cols=15 Identities=13% Similarity=0.399 Sum_probs=13.3
Q ss_pred ccceecCCeEEEeec
Q psy5495 152 DWSIFKGDRVEILVG 166 (273)
Q Consensus 152 ~w~I~kGD~V~VI~G 166 (273)
++.+.+||.|.|+.-
T Consensus 18 eLs~~~Gd~i~v~~~ 32 (58)
T 2vwf_A 18 ELGFRRGDFIHVMDN 32 (58)
T ss_dssp BCCBCTTCEEEEEEC
T ss_pred CcCCCCCCEEEEEEc
Confidence 788999999999974
No 55
>3j20_E 30S ribosomal protein S4E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=42.90 E-value=14 Score=33.41 Aligned_cols=39 Identities=23% Similarity=0.316 Sum_probs=32.5
Q ss_pred cccceecCCeEEEeecCCCCceeEEEEEEcc----CCEEEEcC
Q psy5495 151 KDWSIFKGDRVEILVGKDKGKQGYVIQIFQE----INSVIVEG 189 (273)
Q Consensus 151 ~~w~I~kGD~V~VI~GkDKGK~GkV~~V~r~----~n~ViVEG 189 (273)
...++..|-.+.|+.|+.-|.+|+|.++.+. .+.|.|++
T Consensus 175 d~ikf~~G~l~mvtgG~n~GriG~I~~ie~~~gs~~~~V~v~d 217 (243)
T 3j20_E 175 EVLPFEKGAYVFVTQGKNVARKGRIVEIKRFPMGWPDVVTIED 217 (243)
T ss_dssp EEEECCTTCEEEECSSSSTTCEEEEEECCCCCSSSCCEEEEEE
T ss_pred eEEeccCCCEEEEECCccceEEEEEEEEEEecCCCceEEEEEc
Confidence 4788889999999999999999999999763 35677764
No 56
>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}
Probab=42.21 E-value=14 Score=25.66 Aligned_cols=16 Identities=31% Similarity=0.302 Sum_probs=13.6
Q ss_pred ccceecCCeEEEeecC
Q psy5495 152 DWSIFKGDRVEILVGK 167 (273)
Q Consensus 152 ~w~I~kGD~V~VI~Gk 167 (273)
++.+++||.|.|+.-.
T Consensus 17 eLs~~~Gd~i~v~~~~ 32 (65)
T 2nwm_A 17 ELTLQKGDIVYIHKEV 32 (65)
T ss_dssp BCCBCTTCEEEEEECC
T ss_pred ccCCcCCCEEEEEEec
Confidence 6889999999998643
No 57
>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A
Probab=41.39 E-value=22 Score=24.39 Aligned_cols=16 Identities=31% Similarity=0.285 Sum_probs=13.6
Q ss_pred cccceecCCeEEEeec
Q psy5495 151 KDWSIFKGDRVEILVG 166 (273)
Q Consensus 151 ~~w~I~kGD~V~VI~G 166 (273)
.++.|++||.|.|+.-
T Consensus 18 ~eLs~~~Gd~i~v~~~ 33 (69)
T 1ruw_A 18 SELPLKKGDIVFISRD 33 (69)
T ss_dssp TBCCBCTTCEEEEEEE
T ss_pred CcccCCCCCEEEEEEe
Confidence 3688999999999964
No 58
>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N protein 1; endocytosis, N-WAsp, dynamin, pacsin I, transferase; 2.64A {Mus musculus} PDB: 2x3x_D
Probab=41.36 E-value=20 Score=23.76 Aligned_cols=15 Identities=27% Similarity=0.284 Sum_probs=13.1
Q ss_pred ccceecCCeEEEeec
Q psy5495 152 DWSIFKGDRVEILVG 166 (273)
Q Consensus 152 ~w~I~kGD~V~VI~G 166 (273)
++.+++||.|.|+.-
T Consensus 19 eLs~~~Gd~i~v~~~ 33 (60)
T 2x3w_D 19 ELSFKAGDELTKLGE 33 (60)
T ss_dssp BCCBCTTCEEEECSC
T ss_pred cccCCCCCEEEEEEc
Confidence 788999999999863
No 59
>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus}
Probab=41.34 E-value=15 Score=24.61 Aligned_cols=16 Identities=19% Similarity=0.314 Sum_probs=13.6
Q ss_pred cccceecCCeEEEeec
Q psy5495 151 KDWSIFKGDRVEILVG 166 (273)
Q Consensus 151 ~~w~I~kGD~V~VI~G 166 (273)
.++.+.+||.|.|+.-
T Consensus 20 ~eLs~~~Gd~i~v~~~ 35 (60)
T 2xmf_A 20 DELSFNANDIIDIIKE 35 (60)
T ss_dssp TBCCBCTTCEEEEEEE
T ss_pred CCcCCCCCCEEEEEEe
Confidence 3688999999999974
No 60
>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A
Probab=41.33 E-value=15 Score=24.88 Aligned_cols=15 Identities=27% Similarity=0.333 Sum_probs=13.2
Q ss_pred ccceecCCeEEEeec
Q psy5495 152 DWSIFKGDRVEILVG 166 (273)
Q Consensus 152 ~w~I~kGD~V~VI~G 166 (273)
++.+.+||.|.|+.-
T Consensus 22 eLs~~~Gd~i~v~~~ 36 (64)
T 2ak5_A 22 ELSFSKGDVIHVTRV 36 (64)
T ss_dssp BCCBCTTCEEEEEEC
T ss_pred cccCCCCCEEEEeEe
Confidence 788999999999874
No 61
>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A
Probab=41.28 E-value=15 Score=25.35 Aligned_cols=16 Identities=19% Similarity=0.152 Sum_probs=13.6
Q ss_pred cccceecCCeEEEeec
Q psy5495 151 KDWSIFKGDRVEILVG 166 (273)
Q Consensus 151 ~~w~I~kGD~V~VI~G 166 (273)
.++.+++||.|.|+.-
T Consensus 18 ~eLsf~~Gd~i~v~~~ 33 (67)
T 2bzy_A 18 TALALEVGDIVKVTRM 33 (67)
T ss_dssp TBCCBCTTCEEEEEEE
T ss_pred CccccCCCCEEEEEEe
Confidence 3788999999999864
No 62
>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus}
Probab=41.23 E-value=15 Score=24.67 Aligned_cols=15 Identities=20% Similarity=0.224 Sum_probs=13.1
Q ss_pred ccceecCCeEEEeec
Q psy5495 152 DWSIFKGDRVEILVG 166 (273)
Q Consensus 152 ~w~I~kGD~V~VI~G 166 (273)
++.+++||.|.|+.-
T Consensus 22 eLs~~~Gd~i~v~~~ 36 (60)
T 2gnc_A 22 ELSFKKGASLLLYHR 36 (60)
T ss_dssp BCCBCTTCEEEEEEE
T ss_pred CcCCCCCCEEEEEEe
Confidence 688999999999974
No 63
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.74 E-value=7.5 Score=27.39 Aligned_cols=26 Identities=12% Similarity=0.042 Sum_probs=23.4
Q ss_pred ceecce-EEEeecCCCccceEEEEece
Q psy5495 3 WYCGGG-FLLIGNNKGRTGVFGIFNNT 28 (273)
Q Consensus 3 ~~~gd~-~~l~g~d~gkqg~v~~~n~~ 28 (273)
+-.||. +|..|--+|-+|+|..||..
T Consensus 8 f~~GD~V~V~~Gpf~g~~G~V~evd~e 34 (59)
T 2e6z_A 8 FQPGDNVEVCEGELINLQGKILSVDGN 34 (59)
T ss_dssp CCTTSEEEECSSTTTTCEEEECCCBTT
T ss_pred CCCCCEEEEeecCCCCCEEEEEEEeCC
Confidence 557999 99999999999999999754
No 64
>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.73 E-value=16 Score=25.88 Aligned_cols=15 Identities=20% Similarity=0.195 Sum_probs=13.2
Q ss_pred cccceecCCeEEEee
Q psy5495 151 KDWSIFKGDRVEILV 165 (273)
Q Consensus 151 ~~w~I~kGD~V~VI~ 165 (273)
.++.|++||.|.|+.
T Consensus 29 ~eLsf~~Gd~i~v~~ 43 (75)
T 2ege_A 29 GRLALRAGDVVMVYG 43 (75)
T ss_dssp CBCCBCTTCEEEEES
T ss_pred CcceECCCCEEEEeE
Confidence 478899999999995
No 65
>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae}
Probab=40.52 E-value=28 Score=22.72 Aligned_cols=17 Identities=29% Similarity=0.499 Sum_probs=14.2
Q ss_pred cccceecCCeEEEeecC
Q psy5495 151 KDWSIFKGDRVEILVGK 167 (273)
Q Consensus 151 ~~w~I~kGD~V~VI~Gk 167 (273)
.++.+++||.|.|+.-.
T Consensus 15 ~eLs~~~Gd~i~v~~~~ 31 (54)
T 2a28_A 15 DEISIDPGDIITVIRGD 31 (54)
T ss_dssp TBCCBCTTCEEEEEECC
T ss_pred CCccCCCCCEEEEEEec
Confidence 37889999999999754
No 66
>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1 PDB: 1h92_A 1kik_A
Probab=40.47 E-value=20 Score=24.14 Aligned_cols=16 Identities=31% Similarity=0.453 Sum_probs=13.7
Q ss_pred cccceecCCeEEEeec
Q psy5495 151 KDWSIFKGDRVEILVG 166 (273)
Q Consensus 151 ~~w~I~kGD~V~VI~G 166 (273)
.++.+++||.|.|+.-
T Consensus 21 ~eLs~~~Gd~i~v~~~ 36 (62)
T 2iim_A 21 GDLGFEKGEQLRILEQ 36 (62)
T ss_dssp TBCCBCTTCEEEEEEC
T ss_pred CCcCCCCCCEEEEEEc
Confidence 3788999999999974
No 67
>3u5c_E RP5, S7, YS6, 40S ribosomal protein S4-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_D 3u5g_E
Probab=40.12 E-value=12 Score=34.24 Aligned_cols=38 Identities=16% Similarity=0.187 Sum_probs=31.7
Q ss_pred cccceecCCeEEEeecCCCCceeEEEEEEccC---CEEEEc
Q psy5495 151 KDWSIFKGDRVEILVGKDKGKQGYVIQIFQEI---NSVIVE 188 (273)
Q Consensus 151 ~~w~I~kGD~V~VI~GkDKGK~GkV~~V~r~~---n~ViVE 188 (273)
...++..|-.+.|+.|+.-|.+|+|..+.+.. +.|.|+
T Consensus 171 d~ikfe~Gnl~mvtgG~n~GriG~I~~ie~~~gs~~iV~vk 211 (261)
T 3u5c_E 171 DFIKFDAGKLVYVTGGRNLGRIGTIVHKERHDGGFDLVHIK 211 (261)
T ss_dssp EEECCCSSCCEEECSSTTTTCBCCCCEEECCTTSCCEEEEE
T ss_pred eEEEccCCCEEEEEcCCcceEEEEEEEEEEecCCCcEEEEE
Confidence 47788899999999999999999999998754 345554
No 68
>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A
Probab=40.00 E-value=16 Score=24.51 Aligned_cols=16 Identities=19% Similarity=0.239 Sum_probs=13.6
Q ss_pred ccceecCCeEEEeecC
Q psy5495 152 DWSIFKGDRVEILVGK 167 (273)
Q Consensus 152 ~w~I~kGD~V~VI~Gk 167 (273)
++.+.+||.|.|+.-.
T Consensus 20 eLs~~~Gd~i~v~~~~ 35 (60)
T 1w70_A 20 ELNFKAGDVIFLLSRI 35 (60)
T ss_dssp BCCBCTTCEEEEEEEC
T ss_pred CccCCCCCEEEEEEeC
Confidence 6889999999999743
No 69
>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}
Probab=39.79 E-value=16 Score=25.62 Aligned_cols=15 Identities=13% Similarity=0.264 Sum_probs=13.4
Q ss_pred ccceecCCeEEEeec
Q psy5495 152 DWSIFKGDRVEILVG 166 (273)
Q Consensus 152 ~w~I~kGD~V~VI~G 166 (273)
++.+++||.|.|+.-
T Consensus 29 eLs~~~Gd~i~v~~~ 43 (73)
T 3c0c_A 29 ELGFREGDLITLTNQ 43 (73)
T ss_dssp BCCBCTTCEEEEEEE
T ss_pred CccCcCCCEEEEEEe
Confidence 788999999999974
No 70
>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=39.22 E-value=16 Score=25.83 Aligned_cols=14 Identities=21% Similarity=0.356 Sum_probs=12.9
Q ss_pred ccceecCCeEEEee
Q psy5495 152 DWSIFKGDRVEILV 165 (273)
Q Consensus 152 ~w~I~kGD~V~VI~ 165 (273)
++.|++||.|.|+.
T Consensus 23 eLs~~~Gd~i~v~~ 36 (78)
T 2yuo_A 23 ELGFRKNDIITIIS 36 (78)
T ss_dssp BCCBCTTCEEEEEE
T ss_pred CccCCCCCEEEEEE
Confidence 78899999999996
No 71
>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human osteoclast stimulating factor 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.19 E-value=19 Score=24.78 Aligned_cols=16 Identities=19% Similarity=0.096 Sum_probs=13.6
Q ss_pred cccceecCCeEEEeec
Q psy5495 151 KDWSIFKGDRVEILVG 166 (273)
Q Consensus 151 ~~w~I~kGD~V~VI~G 166 (273)
.++.+.+||.|.|+.-
T Consensus 22 ~eLs~~~Gd~i~v~~~ 37 (68)
T 1x2k_A 22 DELYFEEGDIIYITDM 37 (68)
T ss_dssp TBCCCCSSCEEEEEEC
T ss_pred CcccCCCCCEEEEEEc
Confidence 3788999999999964
No 72
>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A
Probab=39.17 E-value=28 Score=22.89 Aligned_cols=16 Identities=13% Similarity=0.356 Sum_probs=13.7
Q ss_pred cccceecCCeEEEeec
Q psy5495 151 KDWSIFKGDRVEILVG 166 (273)
Q Consensus 151 ~~w~I~kGD~V~VI~G 166 (273)
..+.+.+||.|.|+.-
T Consensus 17 ~eLs~~~Gd~i~v~~~ 32 (58)
T 1sem_A 17 GELAFKRGDVITLINK 32 (58)
T ss_dssp TBCCBCTTCEEEEEEC
T ss_pred CCcCCCCCCEEEEEEe
Confidence 3788999999999975
No 73
>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1
Probab=39.05 E-value=17 Score=24.56 Aligned_cols=15 Identities=13% Similarity=0.361 Sum_probs=13.3
Q ss_pred ccceecCCeEEEeec
Q psy5495 152 DWSIFKGDRVEILVG 166 (273)
Q Consensus 152 ~w~I~kGD~V~VI~G 166 (273)
++.+++||.|.|+.-
T Consensus 21 eLs~~~Gd~i~v~~~ 35 (62)
T 1uj0_A 21 ELTFKHGELITVLDD 35 (62)
T ss_dssp BCCBCTTCEEEEEEC
T ss_pred CcCCCCCCEEEEEEe
Confidence 688999999999974
No 74
>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin, C-CBL-associated protein, CAP, SH3 domain protein 5 SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dlm_A
Probab=38.35 E-value=21 Score=24.35 Aligned_cols=15 Identities=33% Similarity=0.373 Sum_probs=13.2
Q ss_pred ccceecCCeEEEeec
Q psy5495 152 DWSIFKGDRVEILVG 166 (273)
Q Consensus 152 ~w~I~kGD~V~VI~G 166 (273)
++.+++||.|.|+.-
T Consensus 23 eLs~~~Gd~i~v~~~ 37 (68)
T 2dl3_A 23 ELPLQKGDIVYIYKQ 37 (68)
T ss_dssp BCCBCTTCEEEEEEC
T ss_pred CccCCCCCEEEEeEe
Confidence 688999999999873
No 75
>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.15 E-value=17 Score=25.32 Aligned_cols=14 Identities=21% Similarity=0.275 Sum_probs=12.7
Q ss_pred ccceecCCeEEEee
Q psy5495 152 DWSIFKGDRVEILV 165 (273)
Q Consensus 152 ~w~I~kGD~V~VI~ 165 (273)
++.|++||.|.|+.
T Consensus 25 eLs~~~Gd~i~v~~ 38 (72)
T 2dl8_A 25 ELSFKKGASLLLYQ 38 (72)
T ss_dssp BCCBCTTCEEEEEE
T ss_pred EeccCCCCEEEEEe
Confidence 68899999999986
No 76
>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP: b.34.2.1
Probab=38.06 E-value=22 Score=24.61 Aligned_cols=15 Identities=33% Similarity=0.583 Sum_probs=13.3
Q ss_pred cccceecCCeEEEee
Q psy5495 151 KDWSIFKGDRVEILV 165 (273)
Q Consensus 151 ~~w~I~kGD~V~VI~ 165 (273)
.++.+.+||.|.|+.
T Consensus 26 ~eLs~~~Gd~i~v~~ 40 (71)
T 1csk_A 26 QDLPFCKGDVLTIVA 40 (71)
T ss_dssp TBCCBCTTCEEEEEE
T ss_pred CcCCCCCCCEEEEeE
Confidence 378899999999998
No 77
>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens}
Probab=38.05 E-value=14 Score=25.56 Aligned_cols=15 Identities=13% Similarity=0.104 Sum_probs=13.1
Q ss_pred ccceecCCeEEEeec
Q psy5495 152 DWSIFKGDRVEILVG 166 (273)
Q Consensus 152 ~w~I~kGD~V~VI~G 166 (273)
++.+++||.|.|+.-
T Consensus 24 eLs~~~Gd~i~v~~~ 38 (67)
T 2eyx_A 24 ALALEVGELVKVTKI 38 (67)
T ss_dssp BCCBCSSEEEEEEEE
T ss_pred ccccCCCCEEEEEEe
Confidence 788999999999864
No 78
>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A
Probab=37.98 E-value=18 Score=23.99 Aligned_cols=15 Identities=33% Similarity=0.583 Sum_probs=13.1
Q ss_pred ccceecCCeEEEeec
Q psy5495 152 DWSIFKGDRVEILVG 166 (273)
Q Consensus 152 ~w~I~kGD~V~VI~G 166 (273)
++.+.+||.|.|+.-
T Consensus 18 eLs~~~Gd~i~v~~~ 32 (58)
T 1zx6_A 18 DLGLKPGDKVQLLEK 32 (58)
T ss_dssp BCCBCTTCEEEEEEE
T ss_pred CccCCCCCEEEEEEe
Confidence 688999999999964
No 79
>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens}
Probab=37.09 E-value=19 Score=23.87 Aligned_cols=16 Identities=19% Similarity=0.096 Sum_probs=13.7
Q ss_pred cccceecCCeEEEeec
Q psy5495 151 KDWSIFKGDRVEILVG 166 (273)
Q Consensus 151 ~~w~I~kGD~V~VI~G 166 (273)
.++.+.+||.|.|+.-
T Consensus 18 ~eLs~~~Gd~i~v~~~ 33 (58)
T 1zlm_A 18 DELYFEEGDIIYITDM 33 (58)
T ss_dssp TBCCBCTTCEEEEEEC
T ss_pred CCccCCCCCEEEEEEe
Confidence 3788999999999974
No 80
>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=37.00 E-value=18 Score=25.41 Aligned_cols=15 Identities=20% Similarity=0.226 Sum_probs=13.0
Q ss_pred ccceecCCeEEEeec
Q psy5495 152 DWSIFKGDRVEILVG 166 (273)
Q Consensus 152 ~w~I~kGD~V~VI~G 166 (273)
++.|.+||.|.|+.-
T Consensus 26 eLs~~~Gd~i~v~~~ 40 (74)
T 1j3t_A 26 HLNFSKHDIITVLEQ 40 (74)
T ss_dssp BCCBCTTCEEEEEEE
T ss_pred ccCCCCCCEEEEEec
Confidence 688999999999863
No 81
>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding, cell adhesion, cytoskeleton, LIPO magnesium, manganese, metal-binding, myristate; 1.40A {Homo sapiens} PDB: 3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A 1bbz_A 1awo_A
Probab=36.73 E-value=19 Score=23.97 Aligned_cols=14 Identities=36% Similarity=0.584 Sum_probs=12.8
Q ss_pred ccceecCCeEEEee
Q psy5495 152 DWSIFKGDRVEILV 165 (273)
Q Consensus 152 ~w~I~kGD~V~VI~ 165 (273)
++.+.+||.|.|+.
T Consensus 21 eLs~~~Gd~i~v~~ 34 (63)
T 3eg3_A 21 TLSITKGEKLRVLG 34 (63)
T ss_dssp BCCBCTTCEEEEEE
T ss_pred ccCCCCCCEEEEEE
Confidence 68999999999997
No 82
>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A
Probab=36.56 E-value=33 Score=22.64 Aligned_cols=16 Identities=6% Similarity=0.162 Sum_probs=13.7
Q ss_pred cccceecCCeEEEeec
Q psy5495 151 KDWSIFKGDRVEILVG 166 (273)
Q Consensus 151 ~~w~I~kGD~V~VI~G 166 (273)
.++.+++||.|.|+.-
T Consensus 15 ~eLs~~~Gd~i~v~~~ 30 (58)
T 1jo8_A 15 NELTFVENDKIINIEF 30 (58)
T ss_dssp TBCCBCTTCEEEEEEC
T ss_pred CCcccCCCCEEEEEEe
Confidence 3788999999999974
No 83
>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.32 E-value=19 Score=25.40 Aligned_cols=15 Identities=20% Similarity=0.317 Sum_probs=13.2
Q ss_pred ccceecCCeEEEeec
Q psy5495 152 DWSIFKGDRVEILVG 166 (273)
Q Consensus 152 ~w~I~kGD~V~VI~G 166 (273)
++.|++||.|.|+.-
T Consensus 26 eLs~~~Gd~i~v~~~ 40 (76)
T 2epd_A 26 ELSFRRGDVLRLHER 40 (76)
T ss_dssp BCEECTTCEEEEEEE
T ss_pred ccCCCCCCEEEEEEe
Confidence 788999999999964
No 84
>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1
Probab=35.31 E-value=33 Score=24.12 Aligned_cols=16 Identities=25% Similarity=0.185 Sum_probs=14.1
Q ss_pred cccceecCCeEEEeec
Q psy5495 151 KDWSIFKGDRVEILVG 166 (273)
Q Consensus 151 ~~w~I~kGD~V~VI~G 166 (273)
.++.|++||.|.|+.-
T Consensus 33 ~eLsf~~Gd~i~v~~~ 48 (78)
T 1k1z_A 33 GFLRLNPGDIVELTKA 48 (78)
T ss_dssp CCCCBCTTCEEEEEEC
T ss_pred CccCCCCCCEEEEEEc
Confidence 4788999999999986
No 85
>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine nucleotide exchange factor (GEF) 9, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.07 E-value=24 Score=25.13 Aligned_cols=15 Identities=20% Similarity=0.417 Sum_probs=13.2
Q ss_pred ccceecCCeEEEeec
Q psy5495 152 DWSIFKGDRVEILVG 166 (273)
Q Consensus 152 ~w~I~kGD~V~VI~G 166 (273)
++.|++||.|.|+.-
T Consensus 26 eLs~~~Gd~i~v~~~ 40 (81)
T 2ysq_A 26 ELAFKAGDVIKVLDA 40 (81)
T ss_dssp SCCCCTTCEEEEEEC
T ss_pred cCCCCCCCEEEEEEE
Confidence 688999999999864
No 86
>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A
Probab=34.94 E-value=35 Score=23.36 Aligned_cols=15 Identities=27% Similarity=0.222 Sum_probs=13.7
Q ss_pred ccceecCCeEEEeec
Q psy5495 152 DWSIFKGDRVEILVG 166 (273)
Q Consensus 152 ~w~I~kGD~V~VI~G 166 (273)
++.|++||.|.|+.-
T Consensus 26 eLsf~~Gd~i~v~~~ 40 (70)
T 1gcq_C 26 FLRLNPGDIVELTKA 40 (70)
T ss_dssp BCCBCTTCEEEEEEC
T ss_pred cCCcCCCCEEEEEeC
Confidence 788999999999986
No 87
>1w1f_A Tyrosine-protein kinase LYN; SH3-domain, SH3 domain, tyrosine kinase, signal transduction; NMR {Homo sapiens} PDB: 1wa7_A
Probab=34.69 E-value=22 Score=23.98 Aligned_cols=15 Identities=33% Similarity=0.585 Sum_probs=13.0
Q ss_pred ccceecCCeEEEeec
Q psy5495 152 DWSIFKGDRVEILVG 166 (273)
Q Consensus 152 ~w~I~kGD~V~VI~G 166 (273)
++.+.+||.|.|+.-
T Consensus 23 eLs~~~Gd~i~v~~~ 37 (65)
T 1w1f_A 23 DLSFKKGEKMKVLEE 37 (65)
T ss_dssp CCCBCTTCEEEEEEE
T ss_pred cCCCCCCCEEEEEEc
Confidence 688999999999873
No 88
>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.51 E-value=35 Score=24.12 Aligned_cols=16 Identities=25% Similarity=0.538 Sum_probs=14.0
Q ss_pred ccceecCCeEEEeecC
Q psy5495 152 DWSIFKGDRVEILVGK 167 (273)
Q Consensus 152 ~w~I~kGD~V~VI~Gk 167 (273)
++.|++||.|.|+.-.
T Consensus 33 eLsf~~Gd~i~v~~~~ 48 (80)
T 2d8h_A 33 DLNFQAGDRITVISKT 48 (80)
T ss_dssp BCEECTTCEEEEEECC
T ss_pred eeeEcCCCEEEEeECc
Confidence 7889999999999754
No 89
>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein; 2.05A {Homo sapiens} PDB: 2k6d_A
Probab=34.43 E-value=22 Score=25.00 Aligned_cols=16 Identities=25% Similarity=0.426 Sum_probs=13.6
Q ss_pred cccceecCCeEEEeec
Q psy5495 151 KDWSIFKGDRVEILVG 166 (273)
Q Consensus 151 ~~w~I~kGD~V~VI~G 166 (273)
.++.|++||.|.|+.=
T Consensus 17 ~eLs~~~Gd~i~vl~~ 32 (69)
T 2ydl_A 17 DELTIKEGDIVTLINK 32 (69)
T ss_dssp TBCCBCTTCEEEEEES
T ss_pred CccccCCCCEEEEEEc
Confidence 3788999999999964
No 90
>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=34.10 E-value=27 Score=24.16 Aligned_cols=15 Identities=13% Similarity=0.328 Sum_probs=13.0
Q ss_pred cccceecCCeEEEee
Q psy5495 151 KDWSIFKGDRVEILV 165 (273)
Q Consensus 151 ~~w~I~kGD~V~VI~ 165 (273)
.++.|++||.|.|+.
T Consensus 23 ~eLs~~~Gd~i~v~~ 37 (69)
T 1uhf_A 23 GDLTFTEGEEILVTQ 37 (69)
T ss_dssp SBCCBCTTCEEEECE
T ss_pred CccCCCCCCEEEEEE
Confidence 378899999999986
No 91
>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3, actin-binding, cytoplasm, cytoskeleton, phosphorylation, SH3 domain, DNA damage, DNA repair, nucleus; NMR {Saccharomyces cerevisiae}
Probab=33.91 E-value=35 Score=23.32 Aligned_cols=15 Identities=40% Similarity=0.539 Sum_probs=13.2
Q ss_pred ccceecCCeEEEeec
Q psy5495 152 DWSIFKGDRVEILVG 166 (273)
Q Consensus 152 ~w~I~kGD~V~VI~G 166 (273)
++.|.+||.|.|+.-
T Consensus 22 eLs~~~Gd~i~v~~~ 36 (71)
T 2jt4_A 22 ELTIKSGDKVYILDD 36 (71)
T ss_dssp BCCBCTTCEEEEEES
T ss_pred cccCCCCCEEEEEEC
Confidence 688999999999973
No 92
>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A
Probab=33.87 E-value=23 Score=23.87 Aligned_cols=15 Identities=13% Similarity=0.206 Sum_probs=13.2
Q ss_pred ccceecCCeEEEeec
Q psy5495 152 DWSIFKGDRVEILVG 166 (273)
Q Consensus 152 ~w~I~kGD~V~VI~G 166 (273)
++.+.+||.|.|+.-
T Consensus 17 eLs~~~Gd~i~v~~~ 31 (62)
T 2j6f_A 17 ELTIRVGEIIRNVKK 31 (62)
T ss_dssp BCCBCTTCEEEEEEE
T ss_pred CcCCcCCCEEEEEEe
Confidence 688999999999974
No 93
>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae}
Probab=32.91 E-value=29 Score=24.54 Aligned_cols=15 Identities=27% Similarity=0.259 Sum_probs=13.0
Q ss_pred ccceecCCeEEEeec
Q psy5495 152 DWSIFKGDRVEILVG 166 (273)
Q Consensus 152 ~w~I~kGD~V~VI~G 166 (273)
++.+++||.|.|+.-
T Consensus 21 eLs~~~Gd~i~v~~~ 35 (73)
T 2lcs_A 21 ELRLAEGDIVFISYK 35 (73)
T ss_dssp BCCBCTTCEEEEEEE
T ss_pred ccCCcCCCEEEEEEE
Confidence 788999999999863
No 94
>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3, cysteine-rich domain protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.36 E-value=29 Score=23.82 Aligned_cols=15 Identities=27% Similarity=0.465 Sum_probs=13.3
Q ss_pred cccceecCCeEEEee
Q psy5495 151 KDWSIFKGDRVEILV 165 (273)
Q Consensus 151 ~~w~I~kGD~V~VI~ 165 (273)
.++.|++||.|.|+.
T Consensus 22 ~eLs~~~Gd~i~v~~ 36 (68)
T 2dl4_A 22 EDLEMRPGDIITLLE 36 (68)
T ss_dssp TBCCCCTTCEEEEEE
T ss_pred CCcCCCCCCEEEEEE
Confidence 378899999999997
No 95
>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor protein, downregulation, CBL, apoptosis, junction, cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}
Probab=32.24 E-value=25 Score=24.44 Aligned_cols=15 Identities=27% Similarity=0.443 Sum_probs=13.3
Q ss_pred ccceecCCeEEEeec
Q psy5495 152 DWSIFKGDRVEILVG 166 (273)
Q Consensus 152 ~w~I~kGD~V~VI~G 166 (273)
++.|++||.|.|+.-
T Consensus 25 eLs~~~Gd~i~v~~~ 39 (73)
T 2k9g_A 25 ELTIKEGDIVTLINK 39 (73)
T ss_dssp BCCBCTTCEEEEEEC
T ss_pred eeeECCCCEEEEEEC
Confidence 788999999999964
No 96
>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.91 E-value=24 Score=24.29 Aligned_cols=15 Identities=20% Similarity=0.452 Sum_probs=13.2
Q ss_pred ccceecCCeEEEeec
Q psy5495 152 DWSIFKGDRVEILVG 166 (273)
Q Consensus 152 ~w~I~kGD~V~VI~G 166 (273)
++.|++||.|.|+.-
T Consensus 24 eLs~~~Gd~i~v~~~ 38 (70)
T 2ega_A 24 ELSLQAGEVVDVIEK 38 (70)
T ss_dssp SCCCCTTCBCEEEEE
T ss_pred cccCCCCCEEEEEEc
Confidence 688999999999874
No 97
>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.89 E-value=24 Score=25.41 Aligned_cols=14 Identities=29% Similarity=0.465 Sum_probs=12.8
Q ss_pred ccceecCCeEEEee
Q psy5495 152 DWSIFKGDRVEILV 165 (273)
Q Consensus 152 ~w~I~kGD~V~VI~ 165 (273)
++.|++||.|.|+.
T Consensus 24 eLsf~~Gd~i~v~~ 37 (85)
T 2dlp_A 24 LLSFHRGDLIKLLP 37 (85)
T ss_dssp BCCBCTTCEEEECC
T ss_pred CccCcCCCEEEEEE
Confidence 78899999999996
No 98
>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate repeat-containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2kea_A
Probab=31.74 E-value=30 Score=24.36 Aligned_cols=16 Identities=25% Similarity=0.470 Sum_probs=13.7
Q ss_pred cccceecCCeEEEeec
Q psy5495 151 KDWSIFKGDRVEILVG 166 (273)
Q Consensus 151 ~~w~I~kGD~V~VI~G 166 (273)
.++.|++||.|.|+.-
T Consensus 26 ~eLs~~~Gd~i~v~~~ 41 (73)
T 2ebp_A 26 DSLKLKKGDIIDIISK 41 (73)
T ss_dssp SBCCBCSSCEEEEEEC
T ss_pred CccCCCCCCEEEEEEe
Confidence 3788999999999974
No 99
>1jb0_E Photosystem 1 reaction centre subunit IV; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: b.34.4.2 PDB: 3pcq_E*
Probab=31.54 E-value=50 Score=24.97 Aligned_cols=34 Identities=29% Similarity=0.323 Sum_probs=26.2
Q ss_pred eecCCeEEEeecC--CCCceeEEEEEEcc---CCEEEEc
Q psy5495 155 IFKGDRVEILVGK--DKGKQGYVIQIFQE---INSVIVE 188 (273)
Q Consensus 155 I~kGD~V~VI~Gk--DKGK~GkV~~V~r~---~n~ViVE 188 (273)
|.+||.|.|+.=. .-...|+|.+|+.. +--|+|+
T Consensus 1 i~RGskVrIlR~ESYWyn~vGtVasVD~s~gi~YPV~VR 39 (75)
T 1jb0_E 1 VQRGSKVKILRPESYWYNEVGTVASVDQTPGVKYPVIVR 39 (75)
T ss_dssp CCTTCEEEECCTTCTTBTCEEEEEEECCCTTCSCCEEEE
T ss_pred CCCCCEEEEccccceeecCcceEEEEecCCCccccEEEE
Confidence 5799999999864 56789999999986 3345554
No 100
>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae}
Probab=31.20 E-value=27 Score=22.96 Aligned_cols=14 Identities=29% Similarity=0.304 Sum_probs=12.6
Q ss_pred ccceecCCeEEEee
Q psy5495 152 DWSIFKGDRVEILV 165 (273)
Q Consensus 152 ~w~I~kGD~V~VI~ 165 (273)
++.+.+||.|.|+.
T Consensus 17 eLs~~~Gd~i~v~~ 30 (59)
T 1yn8_A 17 ELRLAEGDIVFISY 30 (59)
T ss_dssp BCCBCTTCEEEEEE
T ss_pred CcCCCCCCEEEEEE
Confidence 68899999999986
No 101
>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A
Probab=31.19 E-value=45 Score=21.80 Aligned_cols=15 Identities=33% Similarity=0.317 Sum_probs=13.2
Q ss_pred ccceecCCeEEEeec
Q psy5495 152 DWSIFKGDRVEILVG 166 (273)
Q Consensus 152 ~w~I~kGD~V~VI~G 166 (273)
++.+.+||.|.|+.-
T Consensus 17 eLs~~~Gd~i~v~~~ 31 (57)
T 1cka_A 17 DLPFKKGDILRIRDK 31 (57)
T ss_dssp BCCBCTTCEEEEEEC
T ss_pred CCCCCCCCEEEEEEe
Confidence 688999999999974
No 102
>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR {Homo sapiens}
Probab=31.03 E-value=20 Score=24.86 Aligned_cols=14 Identities=21% Similarity=0.330 Sum_probs=12.6
Q ss_pred ccceecCCeEEEee
Q psy5495 152 DWSIFKGDRVEILV 165 (273)
Q Consensus 152 ~w~I~kGD~V~VI~ 165 (273)
++.+++||.|.|+.
T Consensus 17 eLs~~~Gd~i~v~~ 30 (65)
T 2fei_A 17 ELELKVGDIIDINE 30 (65)
T ss_dssp BCCCCTTCEEECCC
T ss_pred ccCCCCCCEEEEEE
Confidence 78899999999986
No 103
>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.97 E-value=27 Score=24.33 Aligned_cols=16 Identities=25% Similarity=0.318 Sum_probs=13.7
Q ss_pred cccceecCCeEEEeec
Q psy5495 151 KDWSIFKGDRVEILVG 166 (273)
Q Consensus 151 ~~w~I~kGD~V~VI~G 166 (273)
.++.|++||.|.|+.-
T Consensus 23 ~eLsf~~Gd~i~v~~~ 38 (73)
T 2dl7_A 23 DELSFPEGAIIRILNK 38 (73)
T ss_dssp TBCCBCTTCEEEEEEC
T ss_pred CcCCCCCCCEEEEEEC
Confidence 3688999999999974
No 104
>1i07_A Epidermal growth factor receptor kinase substrate EPS8; hormone/growth factor; 1.80A {Mus musculus} SCOP: b.34.2.1 PDB: 1aoj_A 1i0c_A
Probab=30.70 E-value=27 Score=23.25 Aligned_cols=15 Identities=40% Similarity=0.567 Sum_probs=13.0
Q ss_pred ccceecCCeEEEeec
Q psy5495 152 DWSIFKGDRVEILVG 166 (273)
Q Consensus 152 ~w~I~kGD~V~VI~G 166 (273)
++.+.+||.|.|+.-
T Consensus 17 eLs~~~Gd~i~v~~~ 31 (60)
T 1i07_A 17 ELSVMKDDVLEILDD 31 (60)
T ss_dssp BCCBCTTCEEEECGG
T ss_pred cccCCCCCEEEEEEc
Confidence 688999999999863
No 105
>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein 1, islet-brain-1, IB-1, mitogen-activated P kinase 8-interacting protein 1; 3.00A {Rattus norvegicus}
Probab=30.42 E-value=34 Score=23.61 Aligned_cols=15 Identities=7% Similarity=0.078 Sum_probs=13.0
Q ss_pred ccceecCCeEEEeec
Q psy5495 152 DWSIFKGDRVEILVG 166 (273)
Q Consensus 152 ~w~I~kGD~V~VI~G 166 (273)
++.|.+||.|.|+.-
T Consensus 22 eLs~~~Gd~i~v~~~ 36 (71)
T 2fpf_A 22 ELELEVDDPLLVELQ 36 (71)
T ss_dssp BCCBCTTCEEEEEEE
T ss_pred cccCcCCcEEEEeEe
Confidence 788999999999854
No 106
>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=30.35 E-value=45 Score=23.54 Aligned_cols=16 Identities=25% Similarity=0.318 Sum_probs=13.8
Q ss_pred ccceecCCeEEEeecC
Q psy5495 152 DWSIFKGDRVEILVGK 167 (273)
Q Consensus 152 ~w~I~kGD~V~VI~Gk 167 (273)
++.|++||.|.|+.=.
T Consensus 29 eLs~~~Gd~i~vl~~~ 44 (79)
T 1uhc_A 29 ELSVSANQKLKILEFK 44 (79)
T ss_dssp BCCBCTTCEEEEEESC
T ss_pred ccCCCCCCEEEEEECC
Confidence 7889999999999743
No 107
>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3 domain, PEST phosphatase-interacting protein 1, CD2- binding protein 1; NMR {Homo sapiens}
Probab=30.30 E-value=28 Score=23.87 Aligned_cols=15 Identities=20% Similarity=0.519 Sum_probs=13.3
Q ss_pred ccceecCCeEEEeec
Q psy5495 152 DWSIFKGDRVEILVG 166 (273)
Q Consensus 152 ~w~I~kGD~V~VI~G 166 (273)
++.|.+||.|.|+.-
T Consensus 24 eLs~~~Gd~i~v~~~ 38 (69)
T 2dil_A 24 ELDLSAGDILEVILE 38 (69)
T ss_dssp SCCBCTTCEEEEEEC
T ss_pred ccCCCCCCEEEEEEC
Confidence 788999999999974
No 108
>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=30.13 E-value=27 Score=24.96 Aligned_cols=14 Identities=14% Similarity=0.356 Sum_probs=12.9
Q ss_pred ccceecCCeEEEee
Q psy5495 152 DWSIFKGDRVEILV 165 (273)
Q Consensus 152 ~w~I~kGD~V~VI~ 165 (273)
++.|++||.|.|+.
T Consensus 33 eLsf~~Gd~i~Vl~ 46 (72)
T 2l0a_A 33 ELTFKAGEIITVLD 46 (72)
T ss_dssp BCCBCTTCEEEEEE
T ss_pred ccCCCCCCEEEEEE
Confidence 78899999999996
No 109
>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.05 E-value=25 Score=24.22 Aligned_cols=15 Identities=20% Similarity=0.368 Sum_probs=13.0
Q ss_pred ccceecCCeEEEeec
Q psy5495 152 DWSIFKGDRVEILVG 166 (273)
Q Consensus 152 ~w~I~kGD~V~VI~G 166 (273)
++.+++||.|.|+.-
T Consensus 23 eLs~~~Gd~i~v~~~ 37 (68)
T 2dmo_A 23 ELQVMPGNIVFVLKK 37 (68)
T ss_dssp SCCCCTTCEEEECEE
T ss_pred CCCCCCCCEEEEEEe
Confidence 788999999999953
No 110
>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A {Saccharomyces cerevisiae}
Probab=30.00 E-value=40 Score=23.15 Aligned_cols=14 Identities=7% Similarity=0.097 Sum_probs=12.5
Q ss_pred ccceecCCeEEEee
Q psy5495 152 DWSIFKGDRVEILV 165 (273)
Q Consensus 152 ~w~I~kGD~V~VI~ 165 (273)
.+.|++||.|.|+.
T Consensus 23 eLsf~~Gd~i~v~~ 36 (70)
T 2vkn_A 23 EISFEQNEILQVSD 36 (70)
T ss_dssp BCCBCTTCEEEEEC
T ss_pred cccCCCCCEEEEEE
Confidence 78899999999985
No 111
>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P, import machine, SH3 domain, protein transport; NMR {Saccharomyces cerevisiae} SCOP: b.34.2.1
Probab=29.99 E-value=36 Score=24.19 Aligned_cols=16 Identities=38% Similarity=0.495 Sum_probs=13.8
Q ss_pred ccceecCCeEEEeecC
Q psy5495 152 DWSIFKGDRVEILVGK 167 (273)
Q Consensus 152 ~w~I~kGD~V~VI~Gk 167 (273)
++.|++||.|.|+.=.
T Consensus 24 ELsf~~Gd~i~Vl~~~ 39 (69)
T 1nm7_A 24 EVALKKGDLMAILSKK 39 (69)
T ss_dssp CCCCCTTCEEEECCSS
T ss_pred ccCCCCCCEEEEEecC
Confidence 7889999999999743
No 112
>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A 4hck_A 5hck_A
Probab=29.71 E-value=28 Score=24.89 Aligned_cols=15 Identities=40% Similarity=0.550 Sum_probs=13.2
Q ss_pred ccceecCCeEEEeec
Q psy5495 152 DWSIFKGDRVEILVG 166 (273)
Q Consensus 152 ~w~I~kGD~V~VI~G 166 (273)
++.|++||.|.|+.-
T Consensus 41 eLs~~~Gd~i~v~~~ 55 (86)
T 2oi3_A 41 DLSFQKGDQMVVLEE 55 (86)
T ss_dssp CCCCCTTCEEEEEEE
T ss_pred cCcCCCCCEEEEEEc
Confidence 788999999999863
No 113
>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A
Probab=29.52 E-value=51 Score=21.80 Aligned_cols=17 Identities=35% Similarity=0.431 Sum_probs=14.2
Q ss_pred cccceecCCeEEEeecC
Q psy5495 151 KDWSIFKGDRVEILVGK 167 (273)
Q Consensus 151 ~~w~I~kGD~V~VI~Gk 167 (273)
.++.+++||.|.|+.-.
T Consensus 18 ~eLs~~~Gd~i~v~~~~ 34 (60)
T 1oot_A 18 GDLPFRKGDVITILKKS 34 (60)
T ss_dssp TBCCBCTTCEEEEEECC
T ss_pred CEeeEcCCCEEEEEEeC
Confidence 37889999999999754
No 114
>2v1r_A Peroxisomal membrane protein PAS20; protein transport, translocation, transmembrane, peptide COM structural genomics, peroxisome; 2.1A {Saccharomyces cerevisiae} SCOP: b.34.2.1
Probab=29.11 E-value=37 Score=23.88 Aligned_cols=16 Identities=38% Similarity=0.495 Sum_probs=13.7
Q ss_pred ccceecCCeEEEeecC
Q psy5495 152 DWSIFKGDRVEILVGK 167 (273)
Q Consensus 152 ~w~I~kGD~V~VI~Gk 167 (273)
++.|++||.|.|+.-.
T Consensus 31 eLs~~~Gd~i~v~~~~ 46 (80)
T 2v1r_A 31 EVALKKGDLMAILSKK 46 (80)
T ss_dssp BCCBCTTCEEEEEEEE
T ss_pred EecCCCCCEEEEEECC
Confidence 6889999999999743
No 115
>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3 domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=28.92 E-value=21 Score=25.04 Aligned_cols=15 Identities=27% Similarity=0.346 Sum_probs=13.0
Q ss_pred ccceecCCeEEEeec
Q psy5495 152 DWSIFKGDRVEILVG 166 (273)
Q Consensus 152 ~w~I~kGD~V~VI~G 166 (273)
++.|++||.|.|+.-
T Consensus 26 eLs~~~Gd~i~v~~~ 40 (76)
T 1ujy_A 26 ELSVCKGDIIYVTRV 40 (76)
T ss_dssp SCCBCSSCCEEESSC
T ss_pred cccCCCCCEEEEEEe
Confidence 788999999999863
No 116
>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1
Probab=28.57 E-value=51 Score=22.59 Aligned_cols=15 Identities=33% Similarity=0.317 Sum_probs=13.2
Q ss_pred ccceecCCeEEEeec
Q psy5495 152 DWSIFKGDRVEILVG 166 (273)
Q Consensus 152 ~w~I~kGD~V~VI~G 166 (273)
++.+++||.|.|+.-
T Consensus 19 eLsf~~Gd~i~v~~~ 33 (65)
T 1b07_A 19 DLPFKKGDILRIRDK 33 (65)
T ss_dssp BCCBCTTCEEEEEEC
T ss_pred ccCCcCCCEEEEEEe
Confidence 688999999999974
No 117
>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein 2A, endophilin 1, EEN-B1, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A
Probab=28.57 E-value=21 Score=24.92 Aligned_cols=15 Identities=13% Similarity=0.257 Sum_probs=13.2
Q ss_pred ccceecCCeEEEeec
Q psy5495 152 DWSIFKGDRVEILVG 166 (273)
Q Consensus 152 ~w~I~kGD~V~VI~G 166 (273)
++.|++||.|.|+.-
T Consensus 23 eLs~~~Gd~i~v~~~ 37 (73)
T 2dbm_A 23 ELGFKEGDIITLTNQ 37 (73)
T ss_dssp CCCBCTTCEEECCBC
T ss_pred CccCCCCCEEEEEEe
Confidence 788999999999874
No 118
>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=28.41 E-value=30 Score=23.77 Aligned_cols=16 Identities=25% Similarity=0.426 Sum_probs=13.5
Q ss_pred cccceecCCeEEEeec
Q psy5495 151 KDWSIFKGDRVEILVG 166 (273)
Q Consensus 151 ~~w~I~kGD~V~VI~G 166 (273)
.++.|++||.|.|+.-
T Consensus 22 ~eLs~~~Gd~i~v~~~ 37 (70)
T 2da9_A 22 DELTIKEGDIVTLINK 37 (70)
T ss_dssp TBCCCCTTEEEEEEEC
T ss_pred CEeeEcCCCEEEEEEC
Confidence 3788999999999864
No 119
>2zzd_A Thiocyanate hydrolase subunit alpha; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dd4_A 2dxb_A 2dd5_A* 2dxc_A*
Probab=28.35 E-value=43 Score=27.50 Aligned_cols=28 Identities=25% Similarity=0.376 Sum_probs=22.3
Q ss_pred ccceecCCeEEEeecC----------CCCceeEEEEEE
Q psy5495 152 DWSIFKGDRVEILVGK----------DKGKQGYVIQIF 179 (273)
Q Consensus 152 ~w~I~kGD~V~VI~Gk----------DKGK~GkV~~V~ 179 (273)
.-.|..||+|.|..-. -+||+|+|..+.
T Consensus 34 ~prF~vGDrVrvr~~~p~gHtRlP~YvRGk~G~I~~~~ 71 (126)
T 2zzd_A 34 KSKFNVGDRVRIKDLPDLFYTRTMTYTRGATGTIVRLV 71 (126)
T ss_dssp SCSSCTTCEEEECCCCCSSCCSSCGGGTTCEEEEEEEE
T ss_pred CCccCCCCEEEEccCCCCCceeccHHhCCCEEEEEEEe
Confidence 4568999999998543 578999998775
No 120
>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.32 E-value=37 Score=24.63 Aligned_cols=16 Identities=19% Similarity=0.167 Sum_probs=13.7
Q ss_pred ccceecCCeEEEeecC
Q psy5495 152 DWSIFKGDRVEILVGK 167 (273)
Q Consensus 152 ~w~I~kGD~V~VI~Gk 167 (273)
++.|++||.|.|+.-.
T Consensus 34 eLsf~~Gd~i~v~~~~ 49 (88)
T 2dbk_A 34 ALALEVGDIVKVTRMN 49 (88)
T ss_dssp BCCBCTTCEEEEEEEC
T ss_pred cccCCCCCEEEEEEec
Confidence 6889999999998753
No 121
>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3, protein-protein interaction, structural genomics; NMR {Homo sapiens}
Probab=28.05 E-value=40 Score=23.12 Aligned_cols=14 Identities=21% Similarity=0.710 Sum_probs=12.7
Q ss_pred ccceecCCeEEEee
Q psy5495 152 DWSIFKGDRVEILV 165 (273)
Q Consensus 152 ~w~I~kGD~V~VI~ 165 (273)
++.|.+||.|.|+.
T Consensus 23 eLs~~~Gd~i~v~~ 36 (68)
T 1wxt_A 23 ELTVVQGEKLEVLD 36 (68)
T ss_dssp BCCBCTTCEEEEEE
T ss_pred cCCCCCCCEEEEEE
Confidence 78899999999986
No 122
>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.99 E-value=31 Score=24.43 Aligned_cols=15 Identities=13% Similarity=-0.020 Sum_probs=13.1
Q ss_pred ccceecCCeEEEeec
Q psy5495 152 DWSIFKGDRVEILVG 166 (273)
Q Consensus 152 ~w~I~kGD~V~VI~G 166 (273)
++.|++||.|.|+.-
T Consensus 33 eLs~~~Gd~i~v~~~ 47 (79)
T 1x69_A 33 EISFDPDDIITNIEM 47 (79)
T ss_dssp BCCCCTTCEEEEEEE
T ss_pred CcCcCCCCEEEEeEe
Confidence 788999999999953
No 123
>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2js2_A
Probab=27.81 E-value=31 Score=24.18 Aligned_cols=15 Identities=27% Similarity=0.381 Sum_probs=13.2
Q ss_pred cccceecCCeEEEee
Q psy5495 151 KDWSIFKGDRVEILV 165 (273)
Q Consensus 151 ~~w~I~kGD~V~VI~ 165 (273)
.++.+++||.|.|+.
T Consensus 19 ~ELsf~~Gd~i~vl~ 33 (67)
T 2b86_A 19 QELDIKKNERLWLLD 33 (67)
T ss_dssp TSCCBCTTCEEEEEE
T ss_pred CccccCCCCEEEEEe
Confidence 378899999999996
No 124
>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13; compact beta-barrel of five anti-parrallel beta-strands; 2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1n5z_A
Probab=27.69 E-value=39 Score=24.52 Aligned_cols=16 Identities=38% Similarity=0.495 Sum_probs=13.7
Q ss_pred ccceecCCeEEEeecC
Q psy5495 152 DWSIFKGDRVEILVGK 167 (273)
Q Consensus 152 ~w~I~kGD~V~VI~Gk 167 (273)
++.|++||.|.|+.-.
T Consensus 31 eLsf~~Gd~i~v~~~~ 46 (92)
T 1jqq_A 31 EVALKKGDLMAILSKK 46 (92)
T ss_dssp BCCBCTTCEEEEEEEE
T ss_pred CcCCCCCCEEEEEECC
Confidence 6889999999999753
No 125
>1at0_A 17-hedgehog; developmental signaling molecule, cholesterol transfer, signaling protein; 1.90A {Drosophila melanogaster} SCOP: b.86.1.1
Probab=27.30 E-value=87 Score=25.06 Aligned_cols=30 Identities=10% Similarity=-0.032 Sum_probs=18.7
Q ss_pred CcccceecCCeEEEeecCC-CCceeEEEEEE
Q psy5495 150 IKDWSIFKGDRVEILVGKD-KGKQGYVIQIF 179 (273)
Q Consensus 150 i~~w~I~kGD~V~VI~GkD-KGK~GkV~~V~ 179 (273)
+.--.++.||.|.+..|.+ .=..-+|.+|.
T Consensus 87 v~A~~l~~GD~v~~~~~~~~~~~~~~V~~v~ 117 (145)
T 1at0_A 87 VFADRIEEKNQVLVRDVETGELRPQRVVKVG 117 (145)
T ss_dssp EEGGGCCTTCEEEEECTTTCCEEEEEEEEEE
T ss_pred EEHHHCcCCCEEEEecCCCCCEEEEEEEEEE
Confidence 3456789999999998732 11333444443
No 126
>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel, beta sheet, zinc finger, metal binding protein; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A
Probab=27.25 E-value=40 Score=23.10 Aligned_cols=15 Identities=20% Similarity=0.454 Sum_probs=13.3
Q ss_pred ccceecCCeEEEeec
Q psy5495 152 DWSIFKGDRVEILVG 166 (273)
Q Consensus 152 ~w~I~kGD~V~VI~G 166 (273)
++.|.+||.|.|+.-
T Consensus 22 eLs~~~Gd~i~v~~~ 36 (71)
T 1u5s_A 22 ELNFEKGETMEVIEK 36 (71)
T ss_dssp BCCCCSSCCEEEEEC
T ss_pred cccCCCCCEEEEEEC
Confidence 688999999999974
No 127
>3izc_a 60S ribosomal protein RPL27 (L27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_a 3u5e_Z 3u5i_Z 4b6a_Z
Probab=26.93 E-value=4.5 Score=33.84 Aligned_cols=39 Identities=21% Similarity=0.409 Sum_probs=33.1
Q ss_pred eecCCeEEEeecCCCCceeEEEEEEccC------CEEEEcCeeeE
Q psy5495 155 IFKGDRVEILVGKDKGKQGYVIQIFQEI------NSVIVEGLNTY 193 (273)
Q Consensus 155 I~kGD~V~VI~GkDKGK~GkV~~V~r~~------n~ViVEGvN~~ 193 (273)
+++|=.|.|++|+..|+...|++.+.+. +.++|-|+...
T Consensus 5 ~kpGkVvivl~GryaGkKaVivk~~d~gt~d~py~halVaGIdry 49 (136)
T 3izc_a 5 LKAGKVAVVVRGRYAGKKVVIVKPHDEGSKSHPFGHALVAGIERY 49 (136)
T ss_dssp CCCCCCCBCCCSSSSCCBCBCCCCSSSCSCCSSSCCSCCBCCSSS
T ss_pred ccCCEEEEEeccccCCcEEEEEEecCCCCCCCccceEEEEecccC
Confidence 5688899999999999999999987654 26899998774
No 128
>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A
Probab=26.70 E-value=60 Score=21.71 Aligned_cols=15 Identities=7% Similarity=0.366 Sum_probs=13.2
Q ss_pred ccceecCCeEEEeec
Q psy5495 152 DWSIFKGDRVEILVG 166 (273)
Q Consensus 152 ~w~I~kGD~V~VI~G 166 (273)
++.+++||.|.|+.-
T Consensus 22 eLs~~~Gd~i~v~~~ 36 (64)
T 2jte_A 22 ELTFREGEIIHLISK 36 (64)
T ss_dssp BCCBCTTCEEEEEES
T ss_pred ccCCCCCCEEEEEEC
Confidence 788999999999964
No 129
>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.44 E-value=51 Score=23.12 Aligned_cols=16 Identities=13% Similarity=0.341 Sum_probs=13.8
Q ss_pred cccceecCCeEEEeec
Q psy5495 151 KDWSIFKGDRVEILVG 166 (273)
Q Consensus 151 ~~w~I~kGD~V~VI~G 166 (273)
.++.|++||.|.|+.-
T Consensus 29 ~eLsf~~Gd~i~v~~~ 44 (76)
T 2csi_A 29 AELTFCTGDIITVFGE 44 (76)
T ss_dssp TSCCCCTTCEEEEESS
T ss_pred CcccCCCCCEEEEeEe
Confidence 4788999999999974
No 130
>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A 4gbq_A
Probab=25.95 E-value=40 Score=23.56 Aligned_cols=16 Identities=25% Similarity=0.455 Sum_probs=13.5
Q ss_pred ccceecCCeEEEeecC
Q psy5495 152 DWSIFKGDRVEILVGK 167 (273)
Q Consensus 152 ~w~I~kGD~V~VI~Gk 167 (273)
++.+++||.|.|+.-.
T Consensus 25 eLs~~~Gd~i~v~~~~ 40 (74)
T 1gbq_A 25 ELSFKRGDILKVLNEE 40 (74)
T ss_dssp BCCBCTTCEEECCBCS
T ss_pred eeeEcCCCEEEEeEec
Confidence 7889999999998643
No 131
>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=25.90 E-value=60 Score=22.60 Aligned_cols=15 Identities=7% Similarity=0.302 Sum_probs=13.2
Q ss_pred ccceecCCeEEEeec
Q psy5495 152 DWSIFKGDRVEILVG 166 (273)
Q Consensus 152 ~w~I~kGD~V~VI~G 166 (273)
++.|++||.|.|+.-
T Consensus 26 eLs~~~Gd~i~v~~~ 40 (77)
T 2enm_A 26 ELTVTEGEIITVTNP 40 (77)
T ss_dssp BCCCCTTCEEEEEES
T ss_pred eecCCCCCEEEEeEc
Confidence 688999999999974
No 132
>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.86 E-value=48 Score=23.40 Aligned_cols=17 Identities=18% Similarity=0.339 Sum_probs=14.2
Q ss_pred ccceecCCeEEEeecCC
Q psy5495 152 DWSIFKGDRVEILVGKD 168 (273)
Q Consensus 152 ~w~I~kGD~V~VI~GkD 168 (273)
++.|++||.|.|+.-.+
T Consensus 29 eLs~~~Gd~i~v~~~~~ 45 (78)
T 2dl5_A 29 ELTIEEHEVLEVIEDGD 45 (78)
T ss_dssp BCCBCSSEEEEEEECCS
T ss_pred CCCCCCCCEEEEEeccC
Confidence 78899999999997543
No 133
>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.76 E-value=61 Score=23.13 Aligned_cols=15 Identities=40% Similarity=0.519 Sum_probs=13.3
Q ss_pred ccceecCCeEEEeec
Q psy5495 152 DWSIFKGDRVEILVG 166 (273)
Q Consensus 152 ~w~I~kGD~V~VI~G 166 (273)
++.|++||.|.|+.-
T Consensus 33 eLsf~~Gd~i~v~~~ 47 (81)
T 1x6g_A 33 ELAFRKGDVVTILEA 47 (81)
T ss_dssp CCCBCTTCEEEEEEC
T ss_pred CCCCCCCCEEEEEec
Confidence 688999999999974
No 134
>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=25.26 E-value=22 Score=24.84 Aligned_cols=15 Identities=13% Similarity=0.160 Sum_probs=12.8
Q ss_pred cccceecCCeEEEee
Q psy5495 151 KDWSIFKGDRVEILV 165 (273)
Q Consensus 151 ~~w~I~kGD~V~VI~ 165 (273)
.++.|++||.|.|+.
T Consensus 25 ~eLsf~~Gd~i~v~~ 39 (72)
T 1ugv_A 25 SELSFTAGTVFDNVH 39 (72)
T ss_dssp SBCCBCTTCEEBSCC
T ss_pred CEeCCcCCCEEEEEE
Confidence 378899999999885
No 135
>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.20 E-value=59 Score=24.00 Aligned_cols=14 Identities=7% Similarity=0.252 Sum_probs=12.5
Q ss_pred ccceecCCeEEEee
Q psy5495 152 DWSIFKGDRVEILV 165 (273)
Q Consensus 152 ~w~I~kGD~V~VI~ 165 (273)
++.|++||.|.|+.
T Consensus 41 eLsf~~Gd~i~vl~ 54 (97)
T 2csq_A 41 ELPFKEGQIIKVYG 54 (97)
T ss_dssp BCCBCTTCEEEEEE
T ss_pred ccCCCCCCEEEEEE
Confidence 78899999999994
No 136
>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A
Probab=24.99 E-value=69 Score=20.96 Aligned_cols=15 Identities=40% Similarity=0.539 Sum_probs=13.3
Q ss_pred ccceecCCeEEEeec
Q psy5495 152 DWSIFKGDRVEILVG 166 (273)
Q Consensus 152 ~w~I~kGD~V~VI~G 166 (273)
++.+.+||.|.|+.-
T Consensus 18 eLs~~~Gd~i~v~~~ 32 (60)
T 2v1q_A 18 ELTIKSGDKVYILDD 32 (60)
T ss_dssp BCCBCTTCEEEEEES
T ss_pred CccCCCCCEEEEEeC
Confidence 688999999999974
No 137
>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel, transferase; HET: PG4; 1.76A {Homo sapiens} SCOP: b.34.2.1 PDB: 3h0i_A 3h0f_A*
Probab=24.93 E-value=65 Score=22.05 Aligned_cols=17 Identities=35% Similarity=0.606 Sum_probs=14.1
Q ss_pred cccceecCCeEEEeecC
Q psy5495 151 KDWSIFKGDRVEILVGK 167 (273)
Q Consensus 151 ~~w~I~kGD~V~VI~Gk 167 (273)
.++.|.+||.|.|+.-.
T Consensus 30 ~eLs~~~Gd~i~v~~~~ 46 (73)
T 3h0h_A 30 DDLSFHKGEKFQILNSS 46 (73)
T ss_dssp TBCCBCTTCEEEEEECS
T ss_pred CcceEeCCCEEEEEEec
Confidence 37899999999998643
No 138
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=24.87 E-value=70 Score=26.66 Aligned_cols=42 Identities=12% Similarity=-0.045 Sum_probs=27.4
Q ss_pred hhcCCCccccCCCCCcccCcccceecCCeEEEeecCCCCceeEEEEEEccC
Q psy5495 132 LARNRPWEKNKKKIPIEPIKDWSIFKGDRVEILVGKDKGKQGYVIQIFQEI 182 (273)
Q Consensus 132 ~~~n~p~~~r~~kv~vePi~~w~I~kGD~V~VI~GkDKGK~GkV~~V~r~~ 182 (273)
..-.+|++.|+ ...|.+||.|.|---..--..|.|+.++...
T Consensus 56 ~La~I~GKmRk---------~IwI~~GD~VlVe~~~yd~~KG~Ii~r~~~d 97 (143)
T 1d7q_A 56 RLCHIRGKLRK---------KVWINTSDIILVGLRDYQDNKADVILKYNAD 97 (143)
T ss_dssp EEEECCSGGGG---------SCCCCTTCEEEEECSSSSSSCCEEEEEECTT
T ss_pred EEEEeccccee---------eEEecCCCEEEEeeccCCCCeEEEEEEeCHH
Confidence 33466777776 4567899999996443323347787777544
No 139
>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB: 2o31_A 2o9v_A 2o2w_A
Probab=24.74 E-value=51 Score=22.34 Aligned_cols=15 Identities=33% Similarity=0.572 Sum_probs=13.1
Q ss_pred ccceecCCeEEEeec
Q psy5495 152 DWSIFKGDRVEILVG 166 (273)
Q Consensus 152 ~w~I~kGD~V~VI~G 166 (273)
++.+++||.|.|+.-
T Consensus 22 eLs~~~Gd~i~v~~~ 36 (67)
T 2o9s_A 22 EMSFRKGERITLLRQ 36 (67)
T ss_dssp BCCBCTTCEEEEEEE
T ss_pred ccCCCCCCEEEEEEe
Confidence 688999999999963
No 140
>3tee_A Flagella basal BODY P-ring formation protein FLGA; chaperone, flagellar P-ring formation, flagellar FLGI protei periplasmic protein; 1.95A {Salmonella typhimurium}
Probab=24.72 E-value=46 Score=28.94 Aligned_cols=37 Identities=19% Similarity=0.419 Sum_probs=27.9
Q ss_pred ccceecCCeEEEeecC------------CCCceeEEEEEEccCCEEEEcC
Q psy5495 152 DWSIFKGDRVEILVGK------------DKGKQGYVIQIFQEINSVIVEG 189 (273)
Q Consensus 152 ~w~I~kGD~V~VI~Gk------------DKGK~GkV~~V~r~~n~ViVEG 189 (273)
.|-|++||.|.|+... +-|..|..++|.-.+++ +|.|
T Consensus 138 ~~lV~rG~~V~i~~~~~g~~i~~~G~AL~~G~~Gd~IrVr~~Sgk-iv~g 186 (219)
T 3tee_A 138 AWRVKAGQRVQVIANGEGFSVNAEGQAMNNAAVAQNARVRMTSGQ-IVSG 186 (219)
T ss_dssp CCSBCTTCEEEEEEECSSCEEEEEEEECSCBCTTSEEEEEETTSC-EEEE
T ss_pred ccEEcCCCEEEEEEecCCEEEEEEEEEccccCCCCEEEEECCCCC-EEEE
Confidence 6899999999998654 67788888888665555 3444
No 141
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.71 E-value=61 Score=25.73 Aligned_cols=41 Identities=12% Similarity=0.062 Sum_probs=27.3
Q ss_pred hhcCCCccccCCCCCcccCcccceecCCeEEEeecCCC-CceeEEEEEEcc
Q psy5495 132 LARNRPWEKNKKKIPIEPIKDWSIFKGDRVEILVGKDK-GKQGYVIQIFQE 181 (273)
Q Consensus 132 ~~~n~p~~~r~~kv~vePi~~w~I~kGD~V~VI~GkDK-GK~GkV~~V~r~ 181 (273)
..-++|++.|+ ...|.+||.|.|---.+- =..|.|+.+.+.
T Consensus 40 ~la~i~GK~Rk---------~IwI~~GD~VlVe~~~yd~~~kg~Iv~r~~~ 81 (111)
T 2dgy_A 40 FLVSMPSKYRK---------NIWIKRGDFLIVDPIEEGEKVKAEISFVLCK 81 (111)
T ss_dssp EEEECCTTCCS---------CCCCCSSCEEEEEECSSCSSCCEEEEEECCH
T ss_pred EEEEechhhcc---------cEEEcCCCEEEEEecccCCcceEEEEEEeCH
Confidence 34567887777 456789999999654322 245777777654
No 142
>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A
Probab=24.63 E-value=33 Score=23.46 Aligned_cols=15 Identities=13% Similarity=0.102 Sum_probs=13.0
Q ss_pred ccceecCCeEEEeec
Q psy5495 152 DWSIFKGDRVEILVG 166 (273)
Q Consensus 152 ~w~I~kGD~V~VI~G 166 (273)
++.+++||.|.|+.-
T Consensus 23 eLsf~~Gd~i~v~~~ 37 (68)
T 1tg0_A 23 DLNFEKDQEIIVTSV 37 (68)
T ss_dssp BCCBCTTCEEEEEEE
T ss_pred CCCCCCCCEEEEEEe
Confidence 688999999999963
No 143
>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2, SH3 domain, TKL kinase, MKN28, structural GEN structural genomics consortium, SGC; 2.00A {Homo sapiens}
Probab=24.56 E-value=48 Score=24.53 Aligned_cols=15 Identities=33% Similarity=0.711 Sum_probs=13.5
Q ss_pred ccceecCCeEEEeec
Q psy5495 152 DWSIFKGDRVEILVG 166 (273)
Q Consensus 152 ~w~I~kGD~V~VI~G 166 (273)
++.|++||.|.|+.-
T Consensus 45 ELsf~~GD~I~Vl~~ 59 (89)
T 2rf0_A 45 ELTLRRGDRVQVLSQ 59 (89)
T ss_dssp BCCBCTTCEEEEEEC
T ss_pred ccccCCCCEEEEEec
Confidence 788999999999974
No 144
>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural genomics, structural genomics consortium, SGC, BE barrel; HET: EDT; 1.50A {Homo sapiens} SCOP: b.34.2.1
Probab=24.43 E-value=55 Score=22.16 Aligned_cols=15 Identities=33% Similarity=0.381 Sum_probs=13.0
Q ss_pred ccceecCCeEEEeec
Q psy5495 152 DWSIFKGDRVEILVG 166 (273)
Q Consensus 152 ~w~I~kGD~V~VI~G 166 (273)
.+.+++||.+.|+..
T Consensus 24 ~Lsf~~Gd~i~v~~~ 38 (67)
T 3rnj_A 24 LLSFKEGDLITLLVP 38 (67)
T ss_dssp BCCBCTTCEEEECSS
T ss_pred CccCCCCCEEEEeec
Confidence 489999999999964
No 145
>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm, SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2rol_A
Probab=24.37 E-value=61 Score=22.21 Aligned_cols=14 Identities=29% Similarity=0.401 Sum_probs=12.9
Q ss_pred ccceecCCeEEEee
Q psy5495 152 DWSIFKGDRVEILV 165 (273)
Q Consensus 152 ~w~I~kGD~V~VI~ 165 (273)
++.|.+||.|.|+.
T Consensus 24 eLs~~~Gd~i~v~~ 37 (68)
T 2k2m_A 24 ELSVKQRDVLEVLD 37 (68)
T ss_dssp BCCBCTTCEEEEEE
T ss_pred cccCCCCCEEEEEE
Confidence 78899999999997
No 146
>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase, tyrosine-protein kinase LYK, kinase EMT, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.03 E-value=53 Score=23.55 Aligned_cols=15 Identities=7% Similarity=0.204 Sum_probs=13.3
Q ss_pred ccceecCCeEEEeec
Q psy5495 152 DWSIFKGDRVEILVG 166 (273)
Q Consensus 152 ~w~I~kGD~V~VI~G 166 (273)
++.|++||.|.|+.-
T Consensus 35 eLs~~~Gd~i~v~~~ 49 (85)
T 2yuq_A 35 ELALRRNEEYCLLDS 49 (85)
T ss_dssp BCCCCBTEEEEEEEC
T ss_pred cCCCCCCCEEEEEEe
Confidence 788999999999964
No 147
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=23.88 E-value=35 Score=27.48 Aligned_cols=28 Identities=14% Similarity=0.108 Sum_probs=24.5
Q ss_pred ceecce-EEEeecCCCccceEEEEeceee
Q psy5495 3 WYCGGG-FLLIGNNKGRTGVFGIFNNTYN 30 (273)
Q Consensus 3 ~~~gd~-~~l~g~d~gkqg~v~~~n~~~~ 30 (273)
+-.||. .|..|--+|-.|+|..+|.|-+
T Consensus 92 ~~~Gd~VrI~~Gpf~g~~g~V~~vd~~k~ 120 (152)
T 3p8b_B 92 LEPGDLVEVIAGPFKGQKAKVVKIDESKD 120 (152)
T ss_dssp CCTTCEEEECSSTTTTCEEEEEEEETTTT
T ss_pred CCCCCEEEEeeecCCCCEEEEEEEeCCCC
Confidence 346999 9999999999999999988744
No 148
>3iz5_a 60S ribosomal protein L27 (L27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_a
Probab=23.82 E-value=4.7 Score=33.73 Aligned_cols=39 Identities=28% Similarity=0.592 Sum_probs=32.8
Q ss_pred eecCCeEEEeecCCCCceeEEEEEEccC------CEEEEcCeeeE
Q psy5495 155 IFKGDRVEILVGKDKGKQGYVIQIFQEI------NSVIVEGLNTY 193 (273)
Q Consensus 155 I~kGD~V~VI~GkDKGK~GkV~~V~r~~------n~ViVEGvN~~ 193 (273)
+++|=.|.|++|+..|+...|++.+.+. +.++|-|+...
T Consensus 5 ~kpGkVvivl~GryaGkKaVivk~~d~gt~drpy~halVaGIdry 49 (136)
T 3iz5_a 5 LKPGKAVILLQGRFAGRKAVIVRVFEEGTRDRPYGHCLVAGLAKY 49 (136)
T ss_dssp CCCCCSCCCCCSSSSCCCCBCSCCSSSSSCSCSSCCSCCBCCSTT
T ss_pred ccCCEEEEEeccccCCcEEEEEEecCCCCCCCccceEEEEeeccC
Confidence 5688899999999999999999887654 26899998763
No 149
>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein; SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.77 E-value=53 Score=22.45 Aligned_cols=15 Identities=27% Similarity=0.550 Sum_probs=13.1
Q ss_pred cccceecCCeEEEee
Q psy5495 151 KDWSIFKGDRVEILV 165 (273)
Q Consensus 151 ~~w~I~kGD~V~VI~ 165 (273)
.++.|.+||.|.|+.
T Consensus 22 ~eLs~~~Gd~i~v~~ 36 (68)
T 1wxb_A 22 NELSVLKDEVLEVLE 36 (68)
T ss_dssp SBCCBCTTCEEEEEE
T ss_pred CccCCCCCCEEEEEE
Confidence 378899999999996
No 150
>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing adapter molecule 1, SCAM-1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.47 E-value=41 Score=24.46 Aligned_cols=15 Identities=20% Similarity=0.395 Sum_probs=13.1
Q ss_pred ccceecCCeEEEeec
Q psy5495 152 DWSIFKGDRVEILVG 166 (273)
Q Consensus 152 ~w~I~kGD~V~VI~G 166 (273)
++.|++||.|.|+.-
T Consensus 33 eLsf~~Gd~i~v~~~ 47 (90)
T 2yup_A 33 ELSFRKGEHICLIRK 47 (90)
T ss_dssp BCCCCTTCEEEESSC
T ss_pred cCCCCCCCEEEEEEE
Confidence 788999999999963
No 151
>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.37 E-value=43 Score=23.81 Aligned_cols=15 Identities=27% Similarity=0.321 Sum_probs=13.1
Q ss_pred cccceecCCeEEEee
Q psy5495 151 KDWSIFKGDRVEILV 165 (273)
Q Consensus 151 ~~w~I~kGD~V~VI~ 165 (273)
.++.|.+||.|.|+.
T Consensus 23 ~eLs~~~Gd~i~vl~ 37 (80)
T 2ekh_A 23 SEISFPAGVEVQVLE 37 (80)
T ss_dssp TSCCBCTTCEEEEEE
T ss_pred CccCcCCCCEEEEEE
Confidence 378899999999996
No 152
>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Homo sapiens}
Probab=23.30 E-value=35 Score=23.21 Aligned_cols=16 Identities=25% Similarity=0.385 Sum_probs=13.6
Q ss_pred cccceecCCeEEEeec
Q psy5495 151 KDWSIFKGDRVEILVG 166 (273)
Q Consensus 151 ~~w~I~kGD~V~VI~G 166 (273)
.++.|.+||.|.|+.-
T Consensus 22 ~eLs~~~Gd~i~v~~~ 37 (67)
T 2kxc_A 22 TLLSFAQGDVITLLIP 37 (67)
T ss_dssp SBCCBCTTCEEEESSS
T ss_pred CCCcCCCCCEEEEeEC
Confidence 3688999999999973
No 153
>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo sapiens}
Probab=23.13 E-value=65 Score=21.92 Aligned_cols=16 Identities=31% Similarity=0.424 Sum_probs=13.7
Q ss_pred ccceecCCeEEEeecC
Q psy5495 152 DWSIFKGDRVEILVGK 167 (273)
Q Consensus 152 ~w~I~kGD~V~VI~Gk 167 (273)
++.+++||.|.|+.-.
T Consensus 19 eLs~~~Gd~i~v~~~~ 34 (69)
T 1wyx_A 19 ELSFRKGDIMTVLEQD 34 (69)
T ss_dssp BCCBCTTCEEEEEETT
T ss_pred ccCCcCCCEEEEeECC
Confidence 7889999999999754
No 154
>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein 10, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.65 E-value=76 Score=21.64 Aligned_cols=15 Identities=13% Similarity=0.350 Sum_probs=13.1
Q ss_pred ccceecCCeEEEeec
Q psy5495 152 DWSIFKGDRVEILVG 166 (273)
Q Consensus 152 ~w~I~kGD~V~VI~G 166 (273)
++.|++||.|.|+.-
T Consensus 23 eLs~~~Gd~i~vl~~ 37 (70)
T 2ct4_A 23 TISMAEGEDLSLMEE 37 (70)
T ss_dssp CCCBCTTCEEEEEEC
T ss_pred cCCCCCCCEEEEEec
Confidence 788999999999964
No 155
>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal transduction, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=22.63 E-value=73 Score=22.97 Aligned_cols=15 Identities=20% Similarity=0.454 Sum_probs=13.3
Q ss_pred ccceecCCeEEEeec
Q psy5495 152 DWSIFKGDRVEILVG 166 (273)
Q Consensus 152 ~w~I~kGD~V~VI~G 166 (273)
++.|.+||.|.|+.-
T Consensus 33 eLs~~~Gd~i~v~~~ 47 (91)
T 1wx6_A 33 ELNFEKGETMEVIEK 47 (91)
T ss_dssp BCCCCTTCEEEEEEC
T ss_pred cccCCCCCEEEEEEC
Confidence 788999999999974
No 156
>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.38 E-value=59 Score=22.09 Aligned_cols=15 Identities=27% Similarity=0.634 Sum_probs=13.2
Q ss_pred ccceecCCeEEEeec
Q psy5495 152 DWSIFKGDRVEILVG 166 (273)
Q Consensus 152 ~w~I~kGD~V~VI~G 166 (273)
++.|++||.|.|+.-
T Consensus 23 eLs~~~Gd~i~v~~~ 37 (70)
T 2ct3_A 23 ELELREGDRVDVMQQ 37 (70)
T ss_dssp BCCBCTTEEEEEEEE
T ss_pred CccCCCCCEEEEEEE
Confidence 788999999999874
No 157
>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=22.22 E-value=36 Score=23.23 Aligned_cols=14 Identities=21% Similarity=0.411 Sum_probs=12.5
Q ss_pred ccceecCCeEEEee
Q psy5495 152 DWSIFKGDRVEILV 165 (273)
Q Consensus 152 ~w~I~kGD~V~VI~ 165 (273)
++.|++||.|.|+.
T Consensus 23 eLs~~~Gd~i~v~~ 36 (68)
T 1wi7_A 23 ELELKVGDIIEVVG 36 (68)
T ss_dssp BCCBCTTCEECCCE
T ss_pred CccCcCCCEEEEEE
Confidence 78899999999985
No 158
>3qyh_B CO-type nitrIle hydratase beta subunit; cobalt, cysteine sulfinic acid, lyase; 2.00A {Pseudomonas putida} SCOP: b.34.4.0 PDB: 3qxe_B 3qz5_B 3qyg_B 3qz9_B
Probab=21.97 E-value=58 Score=28.82 Aligned_cols=28 Identities=29% Similarity=0.379 Sum_probs=21.9
Q ss_pred ccceecCCeEEEeecC----------CCCceeEEEEEE
Q psy5495 152 DWSIFKGDRVEILVGK----------DKGKQGYVIQIF 179 (273)
Q Consensus 152 ~w~I~kGD~V~VI~Gk----------DKGK~GkV~~V~ 179 (273)
.-+|+.||+|.|..-. -+||+|+|..+.
T Consensus 128 ~~~F~vGd~Vrv~~~~~~~HtR~P~Y~RG~~G~I~~~~ 165 (219)
T 3qyh_B 128 RARFAVGDKVRVLNKNPVGHTRMPRYTRGKVGTVVIDH 165 (219)
T ss_dssp CCCCCTTCEEEECCCCCSSCCCSCGGGTTCEEEEEEEE
T ss_pred CCCCCCCCEEEECCCCCCCcccccHHHCCCeeEEEEEe
Confidence 4568999999996532 578999997774
No 159
>1ugp_B NitrIle hydratase beta subunit; complex, N-butyric acid, non-corrin cobalt, hydration, lyase; HET: BUA; 1.63A {Pseudonocardia thermophila} SCOP: b.34.4.4 PDB: 1ire_B 1ugq_B 1ugr_B 1ugs_B
Probab=21.96 E-value=62 Score=28.73 Aligned_cols=28 Identities=25% Similarity=0.310 Sum_probs=22.6
Q ss_pred ccceecCCeEEEeecC----------CCCceeEEEEEE
Q psy5495 152 DWSIFKGDRVEILVGK----------DKGKQGYVIQIF 179 (273)
Q Consensus 152 ~w~I~kGD~V~VI~Gk----------DKGK~GkV~~V~ 179 (273)
.-+|..||+|.|..-. -+||+|+|..+.
T Consensus 136 ~~~F~vGd~Vrv~~~~~~~HtR~P~Y~Rgk~G~I~~~~ 173 (226)
T 1ugp_B 136 PPKFKEGDVVRFSTASPKGHARRARYVRGKTGTVVKHH 173 (226)
T ss_dssp CCSCCTTCEEEECCCCCSSCCCCCGGGTTCEEEEEEEE
T ss_pred CCcCCCCCeEEEccCCCCCcccccHHhCCCeEEEEEEe
Confidence 4678999999998543 578999998775
No 160
>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}
Probab=21.44 E-value=60 Score=21.32 Aligned_cols=16 Identities=13% Similarity=0.231 Sum_probs=13.8
Q ss_pred ccceecCCeEEEeecC
Q psy5495 152 DWSIFKGDRVEILVGK 167 (273)
Q Consensus 152 ~w~I~kGD~V~VI~Gk 167 (273)
++.+.+||.|.|+.-.
T Consensus 17 eLs~~~Gd~i~v~~~~ 32 (58)
T 2bz8_A 17 ELTISVGEIITNIRKE 32 (58)
T ss_dssp BCCBCTTCEEEEEECC
T ss_pred EeeECCCCEEEEEEeC
Confidence 7889999999999753
No 161
>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural protein; NMR {Dictyostelium discoideum}
Probab=21.10 E-value=58 Score=23.11 Aligned_cols=17 Identities=12% Similarity=0.098 Sum_probs=14.4
Q ss_pred ccceecCCeEEEeecCC
Q psy5495 152 DWSIFKGDRVEILVGKD 168 (273)
Q Consensus 152 ~w~I~kGD~V~VI~GkD 168 (273)
++.|++||.|.|+.-.+
T Consensus 26 eLsf~~Gd~i~v~~~~~ 42 (80)
T 2i0n_A 26 LLPFKRNDIITITFKDQ 42 (80)
T ss_dssp SCCBCSSEEEEEEEESS
T ss_pred CcCCCCCCEEEEEEecC
Confidence 78899999999997543
No 162
>3hht_B NitrIle hydratase beta subunit; alpha and beta proteins (A+B), lyase; 1.16A {Geobacillus pallidus} SCOP: b.34.4.4 PDB: 2dpp_B 1v29_B
Probab=21.05 E-value=61 Score=28.86 Aligned_cols=28 Identities=14% Similarity=0.234 Sum_probs=21.9
Q ss_pred ccceecCCeEEEeecC----------CCCceeEEEEEE
Q psy5495 152 DWSIFKGDRVEILVGK----------DKGKQGYVIQIF 179 (273)
Q Consensus 152 ~w~I~kGD~V~VI~Gk----------DKGK~GkV~~V~ 179 (273)
.-+|+.||+|.|..-. -+||+|+|..+.
T Consensus 139 ~~~F~vGd~Vrv~~~~~~~HtR~P~Y~RG~~G~I~~~~ 176 (229)
T 3hht_B 139 SPRFKVGERIKTKNIHPTGHTRFPRYARDKYGVIDEVY 176 (229)
T ss_dssp CCSCCTTCEEEECCCCCSSCCSCCGGGTTCEEEEEEEE
T ss_pred CCCCCCCCEEEECCCCCCCcccCcHHHCCCeeEEEEEe
Confidence 4568999999996532 578999997774
No 163
>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain, signaling protein; NMR {Homo sapiens}
Probab=20.72 E-value=83 Score=21.74 Aligned_cols=15 Identities=27% Similarity=0.381 Sum_probs=13.2
Q ss_pred cccceecCCeEEEee
Q psy5495 151 KDWSIFKGDRVEILV 165 (273)
Q Consensus 151 ~~w~I~kGD~V~VI~ 165 (273)
.++.|.+||.|.|+.
T Consensus 22 ~eLs~~~Gd~i~v~~ 36 (72)
T 2jw4_A 22 QELDIKKNERLWLLD 36 (72)
T ss_dssp TSCCCCTTCEEEEEE
T ss_pred CcccCCCCCEEEEEE
Confidence 378899999999997
No 164
>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.69 E-value=86 Score=21.96 Aligned_cols=15 Identities=33% Similarity=0.306 Sum_probs=13.0
Q ss_pred ccceecCCeEEEeec
Q psy5495 152 DWSIFKGDRVEILVG 166 (273)
Q Consensus 152 ~w~I~kGD~V~VI~G 166 (273)
++.|.+||.|.|+.-
T Consensus 23 eLs~~~Gd~i~v~~~ 37 (79)
T 2yun_A 23 ELNLEKGDIVIIHEK 37 (79)
T ss_dssp BCCBCTTCEEEEEEC
T ss_pred CcCCCCCCEEEEEEc
Confidence 788999999999863
No 165
>4a17_P RPL21, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_P 4a1c_P 4a1e_P
Probab=20.47 E-value=69 Score=27.22 Aligned_cols=35 Identities=26% Similarity=0.354 Sum_probs=24.4
Q ss_pred ccCc-cc-ceecCCeEEEee-c---------CCCCceeEEEEEEccC
Q psy5495 148 EPIK-DW-SIFKGDRVEILV-G---------KDKGKQGYVIQIFQEI 182 (273)
Q Consensus 148 ePi~-~w-~I~kGD~V~VI~-G---------kDKGK~GkV~~V~r~~ 182 (273)
-|++ .+ .+++||.|-|.. | .+-||.|.|..|-...
T Consensus 25 ~plstym~~yk~GD~VdIk~~gsVqKGmPHk~YHGkTGrV~nvtq~A 71 (157)
T 4a17_P 25 VRISRYLTTYKVGEYVDIMVDGSQHKGMPYKLYHGRTGKVFNVNPRS 71 (157)
T ss_dssp CCHHHHHCCCCTTCEEEECCCSSCCTTCCCGGGTTEEEEEEEECSSE
T ss_pred CCHHHHHHHhcCCCEEEEeccCceecCCCCccccCCcccEeeecCeE
Confidence 3665 33 567999999853 2 2779999998776543
No 166
>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring finger 2 containing protein, NPPSFA; NMR {Mus musculus}
Probab=20.43 E-value=70 Score=21.69 Aligned_cols=15 Identities=20% Similarity=0.455 Sum_probs=13.0
Q ss_pred ccceecCCeEEEeec
Q psy5495 152 DWSIFKGDRVEILVG 166 (273)
Q Consensus 152 ~w~I~kGD~V~VI~G 166 (273)
++.+.+||.|.|+.-
T Consensus 23 eLs~~~Gd~i~v~~~ 37 (70)
T 2cuc_A 23 ELDLQKGEGIRVLGK 37 (70)
T ss_dssp BCCBCTTCEEEEEEE
T ss_pred cCCCCCCCEEEEEEe
Confidence 688999999999853
No 167
>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain, peptide complex, alternative splicing, disease mutation, HOST-virus interaction, phosphoprotein, polymorphism; 1.70A {Homo sapiens} SCOP: b.34.2.1 PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A 1pks_A 1pkt_A
Probab=20.32 E-value=82 Score=22.34 Aligned_cols=15 Identities=20% Similarity=0.317 Sum_probs=13.0
Q ss_pred cccceecCCeEEEee
Q psy5495 151 KDWSIFKGDRVEILV 165 (273)
Q Consensus 151 ~~w~I~kGD~V~VI~ 165 (273)
.++.|.+||.|.|+.
T Consensus 20 ~eLs~~~Gd~I~V~~ 34 (83)
T 3i5r_A 20 EDIDLHLGDILTVNK 34 (83)
T ss_dssp TBCCBCTTCEEEEEH
T ss_pred CccccCCCCEEEEee
Confidence 378999999999994
No 168
>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; GTPase activation, membrane, metal-binding, SH3 domain; NMR {Homo sapiens} PDB: 2rqt_A 2rqu_A
Probab=20.26 E-value=41 Score=23.56 Aligned_cols=14 Identities=7% Similarity=0.309 Sum_probs=12.7
Q ss_pred ccceecCCeEEEee
Q psy5495 152 DWSIFKGDRVEILV 165 (273)
Q Consensus 152 ~w~I~kGD~V~VI~ 165 (273)
++.|++||.|.|+.
T Consensus 26 eLsf~~Gd~i~v~~ 39 (76)
T 2ed1_A 26 ELTFIEGEVIIVTG 39 (76)
T ss_dssp BCCCCSSCEEEESS
T ss_pred CcCcCCCCEEEEEE
Confidence 78899999999996
No 169
>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.09 E-value=44 Score=23.64 Aligned_cols=15 Identities=20% Similarity=0.295 Sum_probs=13.1
Q ss_pred cccceecCCeEEEee
Q psy5495 151 KDWSIFKGDRVEILV 165 (273)
Q Consensus 151 ~~w~I~kGD~V~VI~ 165 (273)
.++.|.+||.|.|+.
T Consensus 32 ~eLs~~~Gd~i~v~~ 46 (79)
T 1x6b_A 32 DEVTLQQADVVLVLQ 46 (79)
T ss_dssp SBCCCCTTEEEEEEE
T ss_pred CCcCCCCCCEEEEEE
Confidence 378899999999987
No 170
>2m0y_A Dedicator of cytokinesis protein 1; apoptosis; NMR {Mus musculus}
Probab=20.07 E-value=71 Score=21.90 Aligned_cols=15 Identities=40% Similarity=0.494 Sum_probs=13.1
Q ss_pred ccceecCCeEEEeec
Q psy5495 152 DWSIFKGDRVEILVG 166 (273)
Q Consensus 152 ~w~I~kGD~V~VI~G 166 (273)
++.+.+||.|.|+.-
T Consensus 27 eLs~~~Gd~i~v~~~ 41 (74)
T 2m0y_A 27 ELSLQIGDTVHILET 41 (74)
T ss_dssp BCCEETTEEEEEEEB
T ss_pred cccCCCCCEEEEEEc
Confidence 689999999999863
Done!