RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5495
(273 letters)
>2ftc_N Mitochondrial ribosomal protein L24; mitochondrial ribosome, large
ribosomal subunit, ribosomal R ribosome; 12.10A {Bos
taurus} PDB: 3iy9_N
Length = 96
Score = 113 bits (286), Expect = 2e-32
Identities = 54/97 (55%), Positives = 68/97 (70%), Gaps = 5/97 (5%)
Query: 158 GDRVEILVGKDKGKQGYVIQIFQEINSVIVEGLNTYLKKMGDSQF----IIKQEAPLLVT 213
GD VEIL GKD GKQG V+Q+ ++ N V+V GLNT+ + +G + +I EAPLL
Sbjct: 1 GDTVEILEGKDAGKQGKVVQVIRQRNWVVVGGLNTHYRYIGKTMDYRGTMIPSEAPLLHR 60
Query: 214 NEVALVDPSDRMGCQVEWRYTEAGDRVRVSKRSGRII 250
V LVDP DR ++EWR+TEAG+RVRVS RSGRII
Sbjct: 61 Q-VKLVDPMDRKPTEIEWRFTEAGERVRVSTRSGRII 96
>3bbo_W Ribosomal protein L24; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 191
Score = 96.5 bits (240), Expect = 1e-24
Identities = 33/130 (25%), Positives = 62/130 (47%), Gaps = 7/130 (5%)
Query: 130 PFLARNRPWEKNK-KKIPIEPIKDWSIFKGDRVEILVGKDKGKQGYVIQIFQEINSVIVE 188
+ R + WE+ K + + + GD V+++ G +KGK G + +I + ++VI++
Sbjct: 43 LIVMRIKRWERKDCKPNSLPKLHKRHVKVGDTVKVISGGEKGKIGEISKIHKHNSTVIIK 102
Query: 189 GLNTYLKKMGDSQF-----IIKQEAPLLVTNEVALVDPSDRMGCQVEWRYTEAGDRVRVS 243
LN K + + IIK EA + +N V L+ + +V + E +VR
Sbjct: 103 DLNFKTKHVKSKEEGEQGQIIKIEAAIHSSN-VMLILKEQEVADRVGHKILEDVRKVRYL 161
Query: 244 KRSGRIIPIP 253
++G I+ P
Sbjct: 162 IKTGEIVDTP 171
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA,
protein Y, stress RES stationary phase, ribosome
hibernation, ribosome; 2.70A {Thermus thermophilus} PDB:
1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y
2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y
2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ...
Length = 110
Score = 87.6 bits (218), Expect = 3e-22
Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 6/101 (5%)
Query: 155 IFKGDRVEILVGKDKGKQGYVIQIFQEINSVIVEGLNTYLKKMGDSQF-----IIKQEAP 209
+ KGD V + GK KG+ G V ++ + +VIVEG+N K + S I++EAP
Sbjct: 7 VKKGDTVLVASGKYKGRVGKVKEVLPKKYAVIVEGVNIVKKAVRVSPKYPQGGFIEKEAP 66
Query: 210 LLVTNEVALVDPSDRMGCQVEWRYTEAGDRVRVSKRSGRII 250
L + V + P+ +V ++ E G ++RV + G +
Sbjct: 67 LHASK-VRPICPACGKPTRVRKKFLENGKKIRVCAKCGGAL 106
>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S*
1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R*
3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V
1voy_V 1vp0_V
Length = 115
Score = 81.9 bits (203), Expect = 6e-20
Identities = 34/101 (33%), Positives = 48/101 (47%), Gaps = 7/101 (6%)
Query: 155 IFKGDRVEILVGKDKGKQGYVIQIFQEINSVIVEGLNTYLKKMGDSQF-----IIKQEAP 209
KGD V +L GK KG+ G V+ V+VEG+N K + S ++E
Sbjct: 16 FKKGDTVIVLSGKHKGQTGKVLLALPRDQKVVVEGVNVITKNVKPSMTNPQGGQEQRELA 75
Query: 210 LLVTNEVALVDPSDRMGCQVEWRYTEAGDRVRVSKRSGRII 250
L + VALVDP +V + G +VRV+ SG+ I
Sbjct: 76 LHASK-VALVDPETGKATRVRKQ-IVDGKKVRVAVASGKTI 114
>3r8s_U 50S ribosomal protein L24; protein biosynthesis, RNA, tRNA,
transfer RNA, 23S ribosomal subunit, ribosome recycling
factor, RRF, ribosome; 3.00A {Escherichia coli} PDB:
2j28_U* 3fik_U 2wwq_U 3oat_U* 3oas_U* 3ofd_U 3ofc_U
3ofr_U* 3ofz_U* 3og0_U 3ofq_U 3r8t_U 3i1n_U 1vs8_U
1vs6_U 1vt2_U 3i1p_U 3i1r_U 3i1t_U 3i20_U ...
Length = 102
Score = 78.0 bits (193), Expect = 1e-18
Identities = 34/102 (33%), Positives = 52/102 (50%), Gaps = 9/102 (8%)
Query: 155 IFKGDRVEILVGKDKGKQGYVIQIFQEINSVIVEGLNTYLKKMGDSQF------IIKQEA 208
I + D V +L GKDKGK+G V + VIVEG+N K I+++EA
Sbjct: 4 IRRDDEVIVLTGKDKGKRGKVKNVLSS-GKVIVEGINLVKKHQKPVPALNQPGGIVEKEA 62
Query: 209 PLLVTNEVALVDPSDRMGCQVEWRYTEAGDRVRVSKRSGRII 250
+ V+N VA+ + + +V +R+ E G +VR K + I
Sbjct: 63 AIQVSN-VAIFNAATGKADRVGFRF-EDGKKVRFFKSNSETI 102
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex,
RNA-RNA complex, PROT complex, peptidyl transferase
reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A
{Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T*
1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T*
1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T*
1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...
Length = 120
Score = 46.8 bits (111), Expect = 4e-07
Identities = 23/117 (19%), Positives = 43/117 (36%), Gaps = 28/117 (23%)
Query: 132 LARNRPWEKNKKKIPIEPIKDWSIFKGDRVEILVGKDKGKQGYVIQIFQEINSVIVEGLN 191
L+ + E ++ + + GD VE+L G G++G VI + + + VE +
Sbjct: 28 LSADLREEYGQRNVRVN--------AGDTVEVLRGDFAGEEGEVINVDLDKAVIHVEDVT 79
Query: 192 TYLKKMGDSQFIIKQEAPLLVTNEVALVDPSDRMGCQVEWRYTEAGDRVRVSKRSGR 248
K G+ + PL +N V + D + D R ++
Sbjct: 80 LE-KTDGE-----EVPRPLDTSN-VRVTDL-------------DLEDEKREARLESE 116
>3iz5_Y 60S ribosomal protein L26 (L24P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_Y
Length = 150
Score = 41.3 bits (96), Expect = 7e-05
Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 8/73 (10%)
Query: 132 LARNRPWEKNKKKIPIEPIKDWSIFKGDRVEILVGKDKGKQGYVIQIFQEINSVIVEGLN 191
L+ + N + IPI K D V+++ G KG++G V+Q+++ + VE +
Sbjct: 34 LSTELRHKYNVRSIPIR--------KDDEVQVVRGSYKGREGKVVQVYRRRWVIHVERIT 85
Query: 192 TYLKKMGDSQFII 204
I
Sbjct: 86 REKVNGSTVNVGI 98
>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_S 4a1c_S 4a1e_S
Length = 135
Score = 39.3 bits (91), Expect = 3e-04
Identities = 17/73 (23%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
Query: 132 LARNRPWEKNKKKIPIEPIKDWSIFKGDRVEILVGKDKGKQGYVIQIFQEINSVIVEGLN 191
L+++ + N + +P+ K D V I+ GK KG +G V Q++++ ++ VE ++
Sbjct: 34 LSKDLRSKYNVRSMPVR--------KDDEVLIVRGKFKGNKGKVTQVYRKKWAIHVEKIS 85
Query: 192 TYLKKMGDSQFII 204
Q +
Sbjct: 86 KNKLNGAPYQIPL 98
>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome,
ribosomal R ribosomal protein, STM1, eukaryotic
ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L
2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 1s1i_U 3izc_Y 3izs_Y
3jyw_U
Length = 127
Score = 38.5 bits (89), Expect = 4e-04
Identities = 12/73 (16%), Positives = 29/73 (39%), Gaps = 8/73 (10%)
Query: 132 LARNRPWEKNKKKIPIEPIKDWSIFKGDRVEILVGKDKGKQGYVIQIFQEINSVIVEGLN 191
L++ + K +PI + D V ++ G KG++G + +++ +V V+ +
Sbjct: 35 LSKELRAQYGIKALPIR--------RDDEVLVVRGSKKGQEGKISSVYRLKFAVQVDKVT 86
Query: 192 TYLKKMGDSQFII 204
+
Sbjct: 87 KEKVNGASVPINL 99
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.8 bits (92), Expect = 7e-04
Identities = 23/194 (11%), Positives = 64/194 (32%), Gaps = 32/194 (16%)
Query: 55 DIENEDKDTKEQDVLAVTYQPKLSTFEMDIMEEHKIEVLFLGQVYHVYPKGPQ------- 107
D E + + +D+L+V + F+ +++ +L ++ H+
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL 67
Query: 108 -YTVVDQGKDSDFDFSTDRPWEVPFLARNRPWEKNK-KKIPIEPIKDWSIFKGDRVEILV 165
+T++ + ++ F + L N + + K +P ++ R + L
Sbjct: 68 FWTLLSKQEEMVQKFVEE------VLRINYKFLMSPIKTEQRQPSMMTRMYIEQR-DRLY 120
Query: 166 GKDKGKQGYVIQIFQEINSVIVEGLNTYLKKMGDSQFII--------KQEAPLLVTNEVA 217
++ Y + Q L L ++ ++ ++ K + +
Sbjct: 121 NDNQVFAKYNVSRLQPYLK-----LRQALLELRPAKNVLIDGVLGSGKT---WVALDVCL 172
Query: 218 LVDPSDRMGCQVEW 231
+M ++ W
Sbjct: 173 SYKVQCKMDFKIFW 186
Score = 29.1 bits (64), Expect = 2.3
Identities = 27/283 (9%), Positives = 76/283 (26%), Gaps = 73/283 (25%)
Query: 5 CGGGFLLIGNNKGRTGVFG----IFNNTYNMYLEFEYPKI-------VNEYERKYATGCF 53
+ + T++ + K+ +N E F
Sbjct: 323 LTTNPRRLS-------IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375
Query: 54 SD--IENEDKDTKEQDVLAVTYQPKLSTFEMDIMEE-HKIEVLFLGQVYHVYPKGPQYTV 110
+ +L++ + + + M ++ + HK ++ PK ++
Sbjct: 376 DRLSVFPPSAHIPTI-LLSLIWFDVIKSDVMVVVNKLHKYSLVEK------QPKESTISI 428
Query: 111 VDQGKDSDFDFSTDRPWEVPFLAR---NRPWEKNKKKIP----------------IEPIK 151
+ + + + ++ + P IE +
Sbjct: 429 PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE 488
Query: 152 DWSIFK---------GDRVEILVGKDKGKQGYVIQIFQEIN---SVIVEGLNTYLKKMGD 199
++F+ ++ G ++ Q++ I + Y + +
Sbjct: 489 RMTLFRMVFLDFRFLEQKI-RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNA 547
Query: 200 -SQFIIKQEAPLLVTNE-----VALVDPSDRMGCQVEWRYTEA 236
F+ K E L+ + +AL+ + + + EA
Sbjct: 548 ILDFLPKIEENLICSKYTDLLRIALMAEDEAI-------FEEA 583
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.3 bits (91), Expect = 0.001
Identities = 51/270 (18%), Positives = 84/270 (31%), Gaps = 106/270 (39%)
Query: 8 GFLLIG---NN-KGRTGVFG------IFNNTYNMYLEFEYP-----------KIVNEYER 46
GF ++ NN T FG I N Y + FE K +NE+
Sbjct: 1658 GFSILDIVINNPVNLTIHFGGEKGKRIREN-Y-SAMIFETIVDGKLKTEKIFKEINEHST 1715
Query: 47 KYATGCFSDIENEDKDTKEQDVLAVTY--QPKLSTFEM----DIMEEHKI--EVLFLGQV 98
Y F E+ +L+ T QP L+ E D+ + I + F G
Sbjct: 1716 SY---TFRS---------EKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAG-- 1761
Query: 99 YH-VYPKGPQYT-------VVDQGKDSDFDFSTD-------R----PWEVPFLARNRPWE 139
H + G +Y V R VP R+
Sbjct: 1762 -HSL---G-EYAALASLADV--------MSIE-SLVEVVFYRGMTMQVAVP---RDELGR 1804
Query: 140 KNKKKIPIEPIKDWSIFKGDRVEILVGKDKGKQGYVIQI--FQEINS-----VI---VEG 189
N I I P + + F + ++ +V + + G++++I + N V +
Sbjct: 1805 SNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNY---NVENQQYVAAGDLRA 1861
Query: 190 LNT------YLKKMGDSQFIIKQEAPLLVT 213
L+T ++K I L +
Sbjct: 1862 LDTVTNVLNFIKLQK-----IDI-IELQKS 1885
Score = 32.7 bits (74), Expect = 0.16
Identities = 57/351 (16%), Positives = 108/351 (30%), Gaps = 142/351 (40%)
Query: 10 LLIGNNKGRTGVFGIFN---NTYNMYLE-----FE-YPKIVNEY---------------- 44
L +G + IF NT + Y E ++ Y +V +
Sbjct: 145 LFRAVGEGNAQLVAIFGGQGNT-DDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTL 203
Query: 45 --ERKYATGCFSDIEN--EDKDTK-EQDVLA---VTYQPKLSTFEMDIMEEHKIEVLFLG 96
E+ + G +I E+ ++D L ++ P ++ +
Sbjct: 204 DAEKVFTQGL--NILEWLENPSNTPDKDYLLSIPISC-P----------------LIGVI 244
Query: 97 QV--YHVYPKGPQYTVVD-----QGKDSDFDFSTDRPWEVP---FLARNRPWE---KNKK 143
Q+ Y V K +T + +G +T + +A WE + +
Sbjct: 245 QLAHYVVTAKLLGFTPGELRSYLKG-------ATGHSQGLVTAVAIAETDSWESFFVSVR 297
Query: 144 KIPIEPIKDWSIFKGDRVEILVGKDKGKQGY--------VIQIFQEINSVIVEGLNTYLK 195
K I F G R + Y +++ E N EG+ +
Sbjct: 298 KA-IT----VLFFIGVR---------CYEAYPNTSLPPSILEDSLENN----EGVPSP-- 337
Query: 196 KM----GDSQFIIKQ-EAPLLVTN---------EVALVD----------PSDRMGCQVEW 231
M +Q +Q + + TN E++LV+ P G +
Sbjct: 338 -MLSISNLTQ---EQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTL 393
Query: 232 RYTEAGD-----RVRVSKR----SGRIIPIPMAAYETH-DYKTPGTYKVTE 272
R +A R+ S+R S R +P+ + + H P + + +
Sbjct: 394 RKAKAPSGLDQSRIPFSERKLKFSNRFLPV-ASPF--HSHLLVPASDLINK 441
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 145
Score = 31.1 bits (70), Expect = 0.17
Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 10/73 (13%)
Query: 132 LARNRPWEKNKKKIPIEPIKDWSIFKGDRVEILVGKDKGKQ-GYVIQIFQEINSVIVEGL 190
L++ + N + +PI K D V+++ G KG+Q G V+Q++++ + +E +
Sbjct: 34 LSKELRQKYNVRSMPIR--------KDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERV 85
Query: 191 NTYLKKMGDSQFI 203
K G + +
Sbjct: 86 -QREKANGTTVHV 97
>2ckk_A KIN17; beta barrel, ribosomal protein, ribonucleoprotein, nuclear
protein; 1.45A {Homo sapiens}
Length = 127
Score = 28.7 bits (64), Expect = 1.1
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 157 KGDRVEILVGKDKGKQGYVIQIFQEINSVIVE 188
G R+ +L G +G +G + I ++ S +
Sbjct: 73 PGKRILVLNGGYRGNEGTLESINEKTFSATIV 104
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation;
2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Length = 169
Score = 28.1 bits (63), Expect = 2.1
Identities = 8/41 (19%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 29 YNMYLE--FEYPKIVNEYERKYATGCFSDIENEDKDTKEQD 67
++ + +Y K V E K D +++D D + +
Sbjct: 127 ATLFKDHKSQYVKRVKETVEKSWEDDMDDDDDDDDDDDDDE 167
>3n8h_A Pantothenate synthetase; alpha-beta sandwich, ligase, structural
genomics, structural of infectious diseases; HET: MSE
AMP GOL; 2.00A {Francisella tularensis subsp} PDB:
3qtt_A*
Length = 264
Score = 28.3 bits (64), Expect = 2.3
Identities = 8/42 (19%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 79 TFEMDI--MEEHKIEVLFLGQVYHVYPKGPQYTVVDQGKDSD 118
+ DI + ++VLF +YP G + + + ++
Sbjct: 76 QLQQDIQILASLDVDVLFNPSEKDIYPDGNLLRIEPKLEIAN 117
>2y72_A Collagenase, collagenase G; polycystic kidney disease domain, beta
barrel, collagen RECO domain, hydrolase; 1.18A
{Clostridium histolyticum} PDB: 3jqu_A 3js7_A
Length = 85
Score = 26.9 bits (60), Expect = 2.4
Identities = 8/13 (61%), Positives = 8/13 (61%)
Query: 259 THDYKTPGTYKVT 271
H YK GTY VT
Sbjct: 52 VHAYKKAGTYNVT 64
>1wgo_A VPS10 domain-containing receptor sorcs2; polycystic kidney disease,
PKD, structural genomics, KIAA1329 protein; NMR {Homo
sapiens} SCOP: b.1.3.1
Length = 123
Score = 27.4 bits (60), Expect = 2.5
Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 7/56 (12%)
Query: 216 VALVDPSDRMGCQVEWRYTEAGDRVRVSKRSGRIIPIPMAAYETHDYKTPGTYKVT 271
V + D + + + GD + + + P+ H Y++PG Y+V+
Sbjct: 51 VVRQEQGDVLTTKYQVDL---GDGFKAMYVNLTLTGEPI----RHRYESPGIYRVS 99
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 59
Score = 25.9 bits (57), Expect = 2.6
Identities = 7/32 (21%), Positives = 16/32 (50%)
Query: 157 KGDRVEILVGKDKGKQGYVIQIFQEINSVIVE 188
GD VE+ G+ QG ++ + +++ +
Sbjct: 10 PGDNVEVCEGELINLQGKILSVDGNKITIMPK 41
>1b4r_A Protein (PKD1_human); PKD domain 1 from human polycystein-1,
polycystin (precursor), membrane protein; NMR {Homo
sapiens} SCOP: b.1.3.1
Length = 80
Score = 26.7 bits (58), Expect = 2.9
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 259 THDYKTPGTYKVT 271
+H Y PG Y VT
Sbjct: 48 SHRYVLPGRYHVT 60
>3uk2_A Pantothenate synthetase; AMP, structural genomics, seattle S
genomics center for infectious disease, ssgcid, ligase;
HET: AMP; 2.25A {Burkholderia thailandensis}
Length = 283
Score = 27.1 bits (61), Expect = 5.7
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 79 TFEMDI--MEEHKIEVLFLGQVYHVYPKGPQYTVVDQGKDSD 118
T + DI +++ + VLF +YP+ +Y V D
Sbjct: 74 TLQEDIEKLQKENVYVLFAPTERDMYPEPQEYRVQPPHDLGD 115
>2kzw_A Uncharacterized protein; structural genomics, northeast structural
genomics consortiu PSI-2, protein structure initiative;
NMR {Methanosarcina mazei}
Length = 145
Score = 26.4 bits (58), Expect = 8.0
Identities = 4/13 (30%), Positives = 6/13 (46%)
Query: 259 THDYKTPGTYKVT 271
H + G Y V+
Sbjct: 107 LHTFFNEGEYIVS 119
>2vf1_A Capsid protein; dsRNA virus structure, viral protein,
triacontahedron; 3.40A {Rabbit picobirnavirus}
Length = 525
Score = 26.8 bits (58), Expect = 9.3
Identities = 7/61 (11%), Positives = 20/61 (32%), Gaps = 5/61 (8%)
Query: 209 PLLVTNEVALVDPSDRMGCQVEWRYTEAGDRVRVSKRSGRI-IPIPMAAYETHDYKTPGT 267
P V ++ +D D M + + ++++ +P + Y +
Sbjct: 138 PKQVFEQLLAIDFDDLMSNKANYCAQFN----LMAQKINTFALPKYFKSILRMAYVSSNI 193
Query: 268 Y 268
+
Sbjct: 194 F 194
>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding,
cell adhesion, cytoskeleton, LIPO magnesium, manganese,
metal-binding, myristate; 1.40A {Homo sapiens} PDB:
3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A
1bbz_A 1awo_A
Length = 63
Score = 24.5 bits (54), Expect = 9.4
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 9/31 (29%)
Query: 154 SIFKGDRVEIL---------VGKDKGKQGYV 175
SI KG+++ +L + K QG+V
Sbjct: 23 SITKGEKLRVLGYNHNGEWCEAQTKNGQGWV 53
>1whg_A Tubulin specific chaperone B; microtubule binding, cytoskeleton
associated protein, ckapi, structural genomics; NMR {Mus
musculus} SCOP: b.34.10.1
Length = 113
Score = 25.6 bits (56), Expect = 9.4
Identities = 8/42 (19%), Positives = 18/42 (42%)
Query: 134 RNRPWEKNKKKIPIEPIKDWSIFKGDRVEILVGKDKGKQGYV 175
R + + +++ E + +I G R E+ ++G V
Sbjct: 12 RAQQEAEAAQRLSEEKAQASAISVGSRCEVRAPDHSLRRGTV 53
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.139 0.422
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,299,583
Number of extensions: 257359
Number of successful extensions: 646
Number of sequences better than 10.0: 1
Number of HSP's gapped: 635
Number of HSP's successfully gapped: 36
Length of query: 273
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 181
Effective length of database: 4,133,061
Effective search space: 748084041
Effective search space used: 748084041
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.8 bits)