RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5495
         (273 letters)



>d2j01y1 b.34.5.1 (Y:2-102) Ribosomal proteins L24 (L24p) {Thermus
           thermophilus [TaxId: 274]}
          Length = 101

 Score = 90.6 bits (225), Expect = 8e-24
 Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 6/96 (6%)

Query: 155 IFKGDRVEILVGKDKGKQGYVIQIFQEINSVIVEGLNTYLKKMGDSQ-----FIIKQEAP 209
           + KGD V +  GK KG+ G V ++  +  +VIVEG+N   K +  S        I++EAP
Sbjct: 6   VKKGDTVLVASGKYKGRVGKVKEVLPKKYAVIVEGVNIVKKAVRVSPKYPQGGFIEKEAP 65

Query: 210 LLVTNEVALVDPSDRMGCQVEWRYTEAGDRVRVSKR 245
           L  +  V  + P+     +V  ++ E G ++RV  +
Sbjct: 66  LHASK-VRPICPACGKPTRVRKKFLENGKKIRVCAK 100


>d2gycs1 b.34.5.1 (S:3-101) Ribosomal proteins L24 (L24p)
           {Escherichia coli [TaxId: 562]}
          Length = 99

 Score = 82.8 bits (205), Expect = 6e-21
 Identities = 33/99 (33%), Positives = 51/99 (51%), Gaps = 9/99 (9%)

Query: 155 IFKGDRVEILVGKDKGKQGYVIQIFQEINSVIVEGLNTYLKKMGDSQF------IIKQEA 208
           I + D V +L GKDKGK+G V  +      VIVEG+N   K             I+++EA
Sbjct: 2   IRRDDEVIVLTGKDKGKRGKVKNVLSS-GKVIVEGINLVKKHQKPVPALNQPGGIVEKEA 60

Query: 209 PLLVTNEVALVDPSDRMGCQVEWRYTEAGDRVRVSKRSG 247
            + V+N VA+ + +     +V +R+ E G +VR  K + 
Sbjct: 61  AIQVSN-VAIFNAATGKADRVGFRF-EDGKKVRFFKSNS 97


>d2zjrr1 b.34.5.1 (R:4-113) Ribosomal proteins L24 (L24p)
           {Deinococcus radiodurans [TaxId: 1299]}
          Length = 110

 Score = 80.9 bits (200), Expect = 4e-20
 Identities = 33/103 (32%), Positives = 48/103 (46%), Gaps = 7/103 (6%)

Query: 151 KDWSIFKGDRVEILVGKDKGKQGYVIQIFQEINSVIVEGLNTYLKKMGDSQF-----IIK 205
                 KGD V +L GK KG+ G V+        V+VEG+N   K +  S         +
Sbjct: 9   DKLHFKKGDTVIVLSGKHKGQTGKVLLALPRDQKVVVEGVNVITKNVKPSMTNPQGGQEQ 68

Query: 206 QEAPLLVTNEVALVDPSDRMGCQVEWRYTEAGDRVRVSKRSGR 248
           +E  L  +  VALVDP      +V  +  + G +VRV+  SG+
Sbjct: 69  RELALHASK-VALVDPETGKATRVRKQIVD-GKKVRVAVASGK 109


>d1vqot1 b.34.5.1 (T:1-119) Ribosomal proteins L24 (L24p) {Archaeon
           Haloarcula marismortui [TaxId: 2238]}
          Length = 119

 Score = 55.9 bits (135), Expect = 1e-10
 Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 15/93 (16%)

Query: 131 FLARNRPWEKNKKKIPIEPIKDWSIFKGDRVEILVGKDKGKQGYVIQIFQEINSVIVEGL 190
            L+ +   E  ++ + +          GD VE+L G   G++G VI +  +   + VE +
Sbjct: 26  TLSADLREEYGQRNVRVN--------AGDTVEVLRGDFAGEEGEVINVDLDKAVIHVEDV 77

Query: 191 NTYLKKMGDSQFIIKQEAPLLVTNEVALVDPSD 223
               K  G+     +   PL  +N V + D   
Sbjct: 78  TLE-KTDGE-----EVPRPLDTSN-VRVTDLDL 103


>d2c6ja1 a.264.1.1 (A:15-308) Duffy receptor, alpha form {Plasmodium
           knowlesi [TaxId: 5850]}
          Length = 294

 Score = 29.2 bits (65), Expect = 0.50
 Identities = 12/56 (21%), Positives = 21/56 (37%)

Query: 138 WEKNKKKIPIEPIKDWSIFKGDRVEILVGKDKGKQGYVIQIFQEINSVIVEGLNTY 193
            +KN  +   E  KD     GD  +I++G +    GY   +   + S+        
Sbjct: 73  LKKNNYQYNKEFCKDIRWGLGDFGDIIMGTNMEGIGYSQVVENNLRSIFGTDEKAK 128


>d1b4ra_ b.1.3.1 (A:) Polycystein-1, PKD-1 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 80

 Score = 25.7 bits (56), Expect = 1.8
 Identities = 14/70 (20%), Positives = 20/70 (28%), Gaps = 11/70 (15%)

Query: 202 FIIKQEAPLLVTNEVALVDPSDRMGCQVEWRYTEAGDRVRVSKRSGRIIPIPMAAYETHD 261
            ++    PL      A    +        W +   GD       +G           +H 
Sbjct: 2   TLVGPHGPLASGQLAAFHIAAPLPVTATRWDF---GDGSAEVDAAGPAA--------SHR 50

Query: 262 YKTPGTYKVT 271
           Y  PG Y VT
Sbjct: 51  YVLPGRYHVT 60


>d1v7la_ c.8.2.1 (A:) Isopropylmalate isomerase LeuD {Pyrococcus
           horikoshii [TaxId: 53953]}
          Length = 162

 Score = 24.9 bits (54), Expect = 8.0
 Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 5/60 (8%)

Query: 145 IPIEPIKDWSIFKGDRVEILVGKDKGKQGYVIQIFQEINSVIVE-----GLNTYLKKMGD 199
           IP+   K   +  GD V +     + ++G  I +F+ +   ++E     G+  Y+++ GD
Sbjct: 100 IPLLLGKTEGLKDGDLVTVNWETGEVRKGDEILMFEPLEDFLLEIVREGGILEYIRRRGD 159


>d1l0qa1 b.1.3.1 (A:302-391) Surface layer protein {Archaeon
           Methanosarcina mazei [TaxId: 2209]}
          Length = 90

 Score = 24.2 bits (52), Expect = 8.3
 Identities = 6/13 (46%), Positives = 6/13 (46%)

Query: 259 THDYKTPGTYKVT 271
           TH Y   G Y V 
Sbjct: 51  THTYSETGIYTVR 63


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.139    0.422 

Gapped
Lambda     K      H
   0.267   0.0670    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,077,533
Number of extensions: 51687
Number of successful extensions: 152
Number of sequences better than 10.0: 1
Number of HSP's gapped: 146
Number of HSP's successfully gapped: 18
Length of query: 273
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 189
Effective length of database: 1,254,276
Effective search space: 237058164
Effective search space used: 237058164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (23.9 bits)