Query psy5508
Match_columns 85
No_of_seqs 175 out of 1244
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 19:16:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5508.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5508hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ajj_A LR5, low-density lipopr 99.5 2.7E-15 9.1E-20 79.1 3.2 37 26-63 1-37 (37)
2 2jm4_A Relaxin receptor 1; LDL 99.5 6.2E-15 2.1E-19 80.1 4.7 39 24-63 4-43 (43)
3 3a7q_B Low-density lipoprotein 99.5 4.3E-15 1.5E-19 81.1 3.9 39 24-63 5-43 (44)
4 1d2l_A Lipoprotein receptor re 99.5 4.8E-15 1.6E-19 81.4 3.9 38 24-62 3-40 (45)
5 1cr8_A Protein (LOW density li 99.5 1.1E-14 3.8E-19 78.7 4.5 38 25-63 2-40 (42)
6 2m0p_A Low-density lipoprotein 99.5 2.2E-15 7.5E-20 85.2 1.7 40 23-63 3-42 (52)
7 1k7b_A Subgroup A ROUS sarcoma 99.5 1.4E-14 4.8E-19 79.9 3.1 39 24-63 4-47 (47)
8 3dpr_E LDL-receptor class A 3; 99.5 2.6E-14 8.9E-19 76.1 3.1 36 27-63 1-38 (39)
9 2i1p_A Low-density lipoprotein 99.5 1.8E-14 6E-19 79.9 1.9 40 25-65 5-45 (48)
10 2knx_A Prolow-density lipoprot 99.5 3.9E-14 1.3E-18 79.3 3.3 40 24-64 4-44 (50)
11 1j8e_A Low-density lipoprotein 99.4 3E-14 1E-18 77.7 1.9 36 25-60 3-38 (44)
12 2fyj_A Low-density lipoprotein 99.4 3E-13 1E-17 82.2 5.5 40 25-65 3-43 (82)
13 1jrf_A TVA LDL-A module, subgr 99.4 3.4E-14 1.2E-18 78.3 0.8 38 25-63 3-45 (47)
14 2fcw_B LDL receptor, low-densi 99.3 7.5E-13 2.6E-17 80.2 3.6 37 26-63 2-38 (80)
15 2kny_A LRP-1, linker, APO-E; l 99.3 2.2E-12 7.6E-17 78.3 4.4 37 24-60 6-43 (80)
16 2fyj_A Low-density lipoprotein 99.2 7.8E-12 2.7E-16 75.9 4.4 37 26-63 44-81 (82)
17 2fcw_B LDL receptor, low-densi 99.2 1.1E-11 3.8E-16 75.0 2.5 37 26-63 41-79 (80)
18 2gtl_M Hemoglobin linker chain 99.1 3.3E-11 1.1E-15 84.8 4.4 43 22-65 49-95 (217)
19 2gtl_O Extracellular hemoglobi 99.1 1.9E-11 6.6E-16 85.9 2.0 42 25-67 53-96 (215)
20 2gtl_N Extracellular hemoglobi 99.1 1.1E-10 3.8E-15 82.3 5.1 43 22-65 48-94 (220)
21 3m0c_C LDL receptor, low-densi 98.9 1.9E-10 6.5E-15 92.2 0.0 39 22-60 19-57 (791)
22 3ojy_B Complement component C8 98.9 2E-09 6.8E-14 83.4 5.1 34 30-64 69-103 (537)
23 3ojy_A Complement component C8 98.8 2.8E-09 9.5E-14 83.0 4.6 38 26-65 65-103 (554)
24 1n7d_A LDL receptor, low-densi 98.6 2E-08 6.9E-13 78.9 4.2 39 26-65 87-125 (699)
25 1n7d_A LDL receptor, low-densi 98.6 1.9E-08 6.5E-13 79.1 4.0 39 25-64 174-212 (699)
26 2xrc_A Human complement factor 98.6 1.7E-08 5.8E-13 78.1 3.3 40 24-64 200-240 (565)
27 3m0c_C LDL receptor, low-densi 98.5 1.2E-08 4.2E-13 81.7 0.0 39 26-65 105-143 (791)
28 3t5o_A Complement component C6 98.5 1.2E-07 4.3E-12 76.9 4.8 34 30-64 121-154 (913)
29 2xrc_A Human complement factor 98.0 4.1E-06 1.4E-10 64.7 4.0 38 26-64 240-277 (565)
30 1hvw_A Omega-ACTX-HV1A, omega- 29.0 32 0.0011 16.0 1.6 15 26-41 7-21 (26)
31 1i8x_A Granulin-1; two beta-ha 24.0 28 0.00095 16.7 0.9 12 45-56 3-14 (30)
No 1
>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1
Probab=99.55 E-value=2.7e-15 Score=79.14 Aligned_cols=37 Identities=41% Similarity=0.856 Sum_probs=34.3
Q ss_pred CCCCCeEeecCCceeccCcccCCcCCCCCCCCCCCCCC
Q psy5508 26 QCRISEYACENGRCISLDRFCNEYDDCGDKSDEPRYCS 63 (85)
Q Consensus 26 ~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgSDE~~~C~ 63 (85)
.|+..+|+|.+|+||+..|+|||+.||.|||||.+ |+
T Consensus 1 ~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE~~-C~ 37 (37)
T 1ajj_A 1 PCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEEN-CA 37 (37)
T ss_dssp CCCTTCEECTTSCEECGGGTTSSSCCSTTCGGGTT-CC
T ss_pred CCCCCceEcCCCCeechhhccCCCCCCCCCccccC-CC
Confidence 47889999999999999999999999999999986 74
No 2
>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens}
Probab=99.54 E-value=6.2e-15 Score=80.06 Aligned_cols=39 Identities=33% Similarity=0.901 Sum_probs=35.9
Q ss_pred CCCCCCCeEeecC-CceeccCcccCCcCCCCCCCCCCCCCC
Q psy5508 24 HHQCRISEYACEN-GRCISLDRFCNEYDDCGDKSDEPRYCS 63 (85)
Q Consensus 24 ~~~C~~~~f~C~~-g~Ci~~~~~CDg~~DC~DgSDE~~~C~ 63 (85)
...|+.++|+|.+ |+||+..|+|||+.||.|||||.+ |.
T Consensus 4 ~~~C~~~~f~C~~~g~CI~~~~~CDg~~DC~DgSDE~~-C~ 43 (43)
T 2jm4_A 4 DVKCSLGYFPCGNITKCLPQLLHCNGVDDCGNQADEDN-CG 43 (43)
T ss_dssp SCSCCTTEEECSSSSCEEEGGGTTSSCCCSSSCCTTSS-CC
T ss_pred CCCCCCCeeECCCCCeEcCHhhccCCCCCCCCCcccCC-CC
Confidence 4679999999999 899999999999999999999986 73
No 3
>3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens}
Probab=99.54 E-value=4.3e-15 Score=81.05 Aligned_cols=39 Identities=41% Similarity=0.870 Sum_probs=34.0
Q ss_pred CCCCCCCeEeecCCceeccCcccCCcCCCCCCCCCCCCCC
Q psy5508 24 HHQCRISEYACENGRCISLDRFCNEYDDCGDKSDEPRYCS 63 (85)
Q Consensus 24 ~~~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgSDE~~~C~ 63 (85)
...|+..+|+|.+|+||+..|+|||+.||.|||||.+ |.
T Consensus 5 ~~~C~~~~f~C~~g~CI~~~~~CDg~~DC~DgSDE~~-C~ 43 (44)
T 3a7q_B 5 AKECEKDQFQCRNERCIPSVWRCDEDDDCLDHSDEDD-CP 43 (44)
T ss_dssp ---CCTTEEECTTSCEEEGGGTTSSSCCSSSSTTTSC-C-
T ss_pred CCCCCCCceEcCCCCEeChhhccCCCCCCCCCccccC-CC
Confidence 4579999999999999999999999999999999986 85
No 4
>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1
Probab=99.54 E-value=4.8e-15 Score=81.43 Aligned_cols=38 Identities=42% Similarity=0.794 Sum_probs=35.4
Q ss_pred CCCCCCCeEeecCCceeccCcccCCcCCCCCCCCCCCCC
Q psy5508 24 HHQCRISEYACENGRCISLDRFCNEYDDCGDKSDEPRYC 62 (85)
Q Consensus 24 ~~~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgSDE~~~C 62 (85)
+..|+..+|+|.+|+||+..|+|||+.||.|||||.+ |
T Consensus 3 ~~~C~~~~F~C~~g~CI~~~~~CDG~~DC~DgSDE~~-c 40 (45)
T 1d2l_A 3 PPQCQPGEFACANSRCIQERWKCDGDNDCLDNSDEAP-A 40 (45)
T ss_dssp CCBTTBTCEEETTTEEECGGGTTTSSCTTTTCSTTST-T
T ss_pred CCcCCCCceEcCCCCeEehhhccCCCCCCCCCCCCCC-C
Confidence 4579999999999999999999999999999999986 5
No 5
>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1
Probab=99.52 E-value=1.1e-14 Score=78.71 Aligned_cols=38 Identities=39% Similarity=0.835 Sum_probs=34.9
Q ss_pred CCCCCCeEeecC-CceeccCcccCCcCCCCCCCCCCCCCC
Q psy5508 25 HQCRISEYACEN-GRCISLDRFCNEYDDCGDKSDEPRYCS 63 (85)
Q Consensus 25 ~~C~~~~f~C~~-g~Ci~~~~~CDg~~DC~DgSDE~~~C~ 63 (85)
..|...+|+|.+ |+||+..|+|||+.||.|||||.+ |.
T Consensus 2 ~~C~~~~F~C~~~g~CI~~~~~CDg~~DC~DgSDE~~-C~ 40 (42)
T 1cr8_A 2 GGCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKS-CE 40 (42)
T ss_dssp CCSSTTCEECTTTCCEECGGGSSSSSCCSSSSTTTTT-CC
T ss_pred CCCCCCceEeCCCCeEcChhhcCCCCcCCCCCCcccC-CC
Confidence 468999999985 899999999999999999999986 85
No 6
>2m0p_A Low-density lipoprotein receptor-related protein; complement type repeat, megalin, LDL receptor FAMI lipid binding protein; NMR {Homo sapiens}
Probab=99.52 E-value=2.2e-15 Score=85.23 Aligned_cols=40 Identities=40% Similarity=0.929 Sum_probs=36.6
Q ss_pred CCCCCCCCeEeecCCceeccCcccCCcCCCCCCCCCCCCCC
Q psy5508 23 QHHQCRISEYACENGRCISLDRFCNEYDDCGDKSDEPRYCS 63 (85)
Q Consensus 23 ~~~~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgSDE~~~C~ 63 (85)
.+..|++.+|+|.||+||+..|+|||..||+|||||.+ |.
T Consensus 3 ~p~~C~~~~F~C~nG~CIp~~~~CDG~~DC~DgSDE~~-~~ 42 (52)
T 2m0p_A 3 APASCLDTQYTCDNHQCISKNWVCDTDNDCGDGSDEKN-CN 42 (52)
T ss_dssp CCCSSCSSEEECTTCCEEETTSTTSSSCSSSSCHHHHS-CC
T ss_pred CCCCCCCCceECCCCCEEecCccCCCCCCCCCCCcccc-ch
Confidence 35679999999999999999999999999999999986 64
No 7
>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin, 3-10 helix, calcium binding, membrane protein; NMR {Coturnix coturnix} SCOP: g.12.1.1
Probab=99.49 E-value=1.4e-14 Score=79.88 Aligned_cols=39 Identities=31% Similarity=0.785 Sum_probs=34.5
Q ss_pred CCCCCCCeEeec-----CCceeccCcccCCcCCCCCCCCCCCCCC
Q psy5508 24 HHQCRISEYACE-----NGRCISLDRFCNEYDDCGDKSDEPRYCS 63 (85)
Q Consensus 24 ~~~C~~~~f~C~-----~g~Ci~~~~~CDg~~DC~DgSDE~~~C~ 63 (85)
...|++.+|+|. +|+||+.+|+|||+.||.|||||.+ |+
T Consensus 4 ~~~C~~~~F~C~~~~~~~g~CIp~~~~CDG~~DC~DgSDE~~-C~ 47 (47)
T 1k7b_A 4 FGSCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWG-CG 47 (47)
T ss_dssp --CCSTTEECCSSCTTSCCCCEEGGGSSCSSCCSSSSTTTGG-GC
T ss_pred CCCCCCCceEcCCCCCCCCcCCCccccCCCcCCCCCCcccCC-CC
Confidence 356999999998 7899999999999999999999986 73
No 8
>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5*
Probab=99.46 E-value=2.6e-14 Score=76.12 Aligned_cols=36 Identities=36% Similarity=0.893 Sum_probs=33.3
Q ss_pred CCCCeEeecC--CceeccCcccCCcCCCCCCCCCCCCCC
Q psy5508 27 CRISEYACEN--GRCISLDRFCNEYDDCGDKSDEPRYCS 63 (85)
Q Consensus 27 C~~~~f~C~~--g~Ci~~~~~CDg~~DC~DgSDE~~~C~ 63 (85)
|++.+|+|.+ |+||+.+|+|||+.||.|||||.+ |.
T Consensus 1 C~~~~f~C~~~~g~Cip~~~~CDg~~DC~dgsDE~~-C~ 38 (39)
T 3dpr_E 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEEN-CG 38 (39)
T ss_dssp CCTTTCCCSSSSSCCCCTTSSSSSSCCSTTTTTSTT-CC
T ss_pred CCCCceecCCCCCCEeCccccCCCcccCcCCccccc-CC
Confidence 6788999997 899999999999999999999986 85
No 9
>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus}
Probab=99.45 E-value=1.8e-14 Score=79.90 Aligned_cols=40 Identities=33% Similarity=0.799 Sum_probs=36.5
Q ss_pred CCCCCCeEeecCC-ceeccCcccCCcCCCCCCCCCCCCCCCC
Q psy5508 25 HQCRISEYACENG-RCISLDRFCNEYDDCGDKSDEPRYCSRS 65 (85)
Q Consensus 25 ~~C~~~~f~C~~g-~Ci~~~~~CDg~~DC~DgSDE~~~C~~~ 65 (85)
..|...+|+|.+| +||+..|+|||+.||.|||||.+ |...
T Consensus 5 ~~C~~~~F~C~~g~~CI~~~~~CDG~~DC~DgSDE~~-C~~~ 45 (48)
T 2i1p_A 5 LNCTSAQFKCADGSSCINSRYRCDGVYDCRDNSDEAG-CPTR 45 (48)
T ss_dssp CCCCSSSEECSSSSCEECGGGSSSSSCCSSSSHHHHS-SCSS
T ss_pred CCCCCCeeECCCCCEeCCHhhcCCCCCCCCCCccccc-CCCC
Confidence 5688899999999 89999999999999999999997 8653
No 10
>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens}
Probab=99.45 E-value=3.9e-14 Score=79.29 Aligned_cols=40 Identities=25% Similarity=0.625 Sum_probs=35.8
Q ss_pred CCCCCCCeEeec-CCceeccCcccCCcCCCCCCCCCCCCCCC
Q psy5508 24 HHQCRISEYACE-NGRCISLDRFCNEYDDCGDKSDEPRYCSR 64 (85)
Q Consensus 24 ~~~C~~~~f~C~-~g~Ci~~~~~CDg~~DC~DgSDE~~~C~~ 64 (85)
...|++.+|+|. +|+||+..|+|||+.||.|||||.+ |..
T Consensus 4 ~~~C~~~~F~C~~~g~CI~~~~~CDG~~DC~DgSDE~~-C~~ 44 (50)
T 2knx_A 4 GKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESI-AAG 44 (50)
T ss_dssp TCTTCTTEEEETTTTEEEETTTTTSSSCCSTTCGGGSG-GGT
T ss_pred CCCCCCCcEEcCCCCeEcChhhcCCCCCCCCCCCcccc-ccC
Confidence 467999999995 8999999999999999999999986 643
No 11
>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding, calcium binding, complement-like repeat, LRP receptor, signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1
Probab=99.43 E-value=3e-14 Score=77.67 Aligned_cols=36 Identities=42% Similarity=0.988 Sum_probs=33.9
Q ss_pred CCCCCCeEeecCCceeccCcccCCcCCCCCCCCCCC
Q psy5508 25 HQCRISEYACENGRCISLDRFCNEYDDCGDKSDEPR 60 (85)
Q Consensus 25 ~~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgSDE~~ 60 (85)
..|++.+|+|.+|+||+..|+|||+.||.|||||.+
T Consensus 3 ~~C~~~~F~C~~g~CI~~~~~CDg~~DC~DgSDE~~ 38 (44)
T 1j8e_A 3 HSCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETH 38 (44)
T ss_dssp SSSCTTEEECTTSCEEEGGGTTSSSCCSSSSGGGSH
T ss_pred CCCCCCceEeCCCCeEecCcccCCCCCCCCCCCCCC
Confidence 468999999999999999999999999999999974
No 12
>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B
Probab=99.41 E-value=3e-13 Score=82.16 Aligned_cols=40 Identities=40% Similarity=1.010 Sum_probs=36.3
Q ss_pred CCCCCCeEeecCCceeccCcccCCcCCCCCCCCC-CCCCCCC
Q psy5508 25 HQCRISEYACENGRCISLDRFCNEYDDCGDKSDE-PRYCSRS 65 (85)
Q Consensus 25 ~~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgSDE-~~~C~~~ 65 (85)
..|++.+|+|.+|+||+..|+|||+.||.||||| .+ |...
T Consensus 3 ~~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE~~~-C~~~ 43 (82)
T 2fyj_A 3 RTCPPNQFSCASGRCIPISWTCDLDDDCGDRSDESAS-CAYP 43 (82)
T ss_dssp SSSCTTEEETTSSCEEETTSSSSCSSSSCSTTTTTSS-CCCS
T ss_pred CCCCCCceEeCCCCEEeccccCCCcccCCCccccccc-cccc
Confidence 4699999999999999999999999999999999 65 8643
No 13
>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and PG950; disulfide bond, alpha helix, calcium CAGE, signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1
Probab=99.40 E-value=3.4e-14 Score=78.26 Aligned_cols=38 Identities=32% Similarity=0.828 Sum_probs=34.7
Q ss_pred CCCCCCeEeec-----CCceeccCcccCCcCCCCCCCCCCCCCC
Q psy5508 25 HQCRISEYACE-----NGRCISLDRFCNEYDDCGDKSDEPRYCS 63 (85)
Q Consensus 25 ~~C~~~~f~C~-----~g~Ci~~~~~CDg~~DC~DgSDE~~~C~ 63 (85)
..|+..+|+|. +++||+..|+|||+.||.|||||.+ |.
T Consensus 3 ~~C~~~~F~C~~~~~~~~~CIp~~~~CDG~~DC~DgSDE~~-C~ 45 (47)
T 1jrf_A 3 SRCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWG-CG 45 (47)
T ss_dssp CCCCCCCSCSSSCSCCCTTTSGGGGSSSSSCCSSSSCTTHH-HH
T ss_pred CCCCCCeeECCCCCCCCCeEcCHhhcCCCCcCCCCCccccc-CC
Confidence 46999999998 6899999999999999999999986 74
No 14
>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B
Probab=99.33 E-value=7.5e-13 Score=80.24 Aligned_cols=37 Identities=41% Similarity=0.936 Sum_probs=34.7
Q ss_pred CCCCCeEeecCCceeccCcccCCcCCCCCCCCCCCCCC
Q psy5508 26 QCRISEYACENGRCISLDRFCNEYDDCGDKSDEPRYCS 63 (85)
Q Consensus 26 ~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgSDE~~~C~ 63 (85)
.|++.+|+|.+|+||+..|+|||+.||.|||||.+ |.
T Consensus 2 ~C~~~~F~C~~g~CI~~~~~CDg~~DC~DgSDE~~-C~ 38 (80)
T 2fcw_B 2 TCSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEAS-CP 38 (80)
T ss_dssp CCCTTEEECTTSCEEEGGGTTSSSCCSTTCTTTTT-HH
T ss_pred CCCCCccCCCCCCEEeeecccCCcccCCCcccccc-cc
Confidence 58899999999999999999999999999999986 75
No 15
>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens}
Probab=99.30 E-value=2.2e-12 Score=78.27 Aligned_cols=37 Identities=27% Similarity=0.671 Sum_probs=34.0
Q ss_pred CCCCCCCeEeec-CCceeccCcccCCcCCCCCCCCCCC
Q psy5508 24 HHQCRISEYACE-NGRCISLDRFCNEYDDCGDKSDEPR 60 (85)
Q Consensus 24 ~~~C~~~~f~C~-~g~Ci~~~~~CDg~~DC~DgSDE~~ 60 (85)
...|++.+|+|. +|+||+..|+|||+.||.|||||..
T Consensus 6 ~~~C~~~~f~C~~~g~CIp~~~~CDg~~DC~DgsDE~~ 43 (80)
T 2kny_A 6 GKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESI 43 (80)
T ss_dssp SCCCSSSEEECTTSSCEEEHHHHTTSSCCSSSSTTTSG
T ss_pred CCCCCCCceecCCCCeEcChhhcCCCCCCCCCCCcccc
Confidence 467999999998 6899999999999999999999973
No 16
>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B
Probab=99.23 E-value=7.8e-12 Score=75.87 Aligned_cols=37 Identities=46% Similarity=1.120 Sum_probs=33.7
Q ss_pred CCCC-CeEeecCCceeccCcccCCcCCCCCCCCCCCCCC
Q psy5508 26 QCRI-SEYACENGRCISLDRFCNEYDDCGDKSDEPRYCS 63 (85)
Q Consensus 26 ~C~~-~~f~C~~g~Ci~~~~~CDg~~DC~DgSDE~~~C~ 63 (85)
.|.+ .+|+|.+|+||+..++|||+.||.|||||.+ |.
T Consensus 44 ~C~~~~~f~C~~g~CI~~~~~CDG~~DC~DgSDE~~-C~ 81 (82)
T 2fyj_A 44 TCFPLTQFTCNNGRCININWRCDNDNDCGDNSDEAG-CS 81 (82)
T ss_dssp SSCSSSEEECTTSCEEETTCBSSSSBCCSSSSSCSC-CC
T ss_pred cCCCCCceECCCCCeEcHHHccCCCCcCCCCccccC-CC
Confidence 4644 8999999999999999999999999999986 85
No 17
>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B
Probab=99.16 E-value=1.1e-11 Score=75.04 Aligned_cols=37 Identities=35% Similarity=0.814 Sum_probs=33.1
Q ss_pred CCCCCeEeecCCceeccCcccCCcCCCCCCCCC--CCCCC
Q psy5508 26 QCRISEYACENGRCISLDRFCNEYDDCGDKSDE--PRYCS 63 (85)
Q Consensus 26 ~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgSDE--~~~C~ 63 (85)
.|++.+|+|.+|+||+..|+|||+.||.||||| .+ |.
T Consensus 41 ~C~~~~f~C~~g~Ci~~~~~CDg~~DC~dgsDE~~~~-C~ 79 (80)
T 2fcw_B 41 TCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQR-CR 79 (80)
T ss_dssp HCCTTEEECTTSCEEEGGGTTSSSCCSTTCGGGCGGG-C-
T ss_pred cCCceeeECCCCCEEecccccCCCcCCCCCCCcCccc-CC
Confidence 477889999999999999999999999999999 54 64
No 18
>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Probab=99.13 E-value=3.3e-11 Score=84.85 Aligned_cols=43 Identities=40% Similarity=0.760 Sum_probs=37.3
Q ss_pred cCCCCCCCCeEeecC--CceeccCcccCCcCCCCCCCCCC--CCCCCC
Q psy5508 22 LQHHQCRISEYACEN--GRCISLDRFCNEYDDCGDKSDEP--RYCSRS 65 (85)
Q Consensus 22 ~~~~~C~~~~f~C~~--g~Ci~~~~~CDg~~DC~DgSDE~--~~C~~~ 65 (85)
.....|++.+|+|.+ |+||+..|+|||..||.|||||. + |...
T Consensus 49 ~~~~~C~~~~F~C~~~~g~CI~~~~~CDG~~DC~DgSDE~~~~-C~~~ 95 (217)
T 2gtl_M 49 LEEHHCDEHESECRGDVPECIHDLLFCDGEKDCRDGSDEDPET-CSLN 95 (217)
T ss_dssp TSCCCCCTTEEECSSSSCCEEEGGGTTSSSCCSSSSTTTSHHH-HCCG
T ss_pred CCCCCCCCCceecCCCCCcEechhhccCCCCCCCCCCccccCc-CCCC
Confidence 345689999999965 99999999999999999999997 4 7654
No 19
>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Probab=99.10 E-value=1.9e-11 Score=85.94 Aligned_cols=42 Identities=29% Similarity=0.648 Sum_probs=37.3
Q ss_pred CCCCCCeEee--cCCceeccCcccCCcCCCCCCCCCCCCCCCCCc
Q psy5508 25 HQCRISEYAC--ENGRCISLDRFCNEYDDCGDKSDEPRYCSRSKT 67 (85)
Q Consensus 25 ~~C~~~~f~C--~~g~Ci~~~~~CDg~~DC~DgSDE~~~C~~~~~ 67 (85)
..|++.+|+| .||+|||..|+|||..||.|||||.+ |+...+
T Consensus 53 ~~C~~~~F~C~~~~g~CIp~~~~CDG~~DC~DgSDE~~-C~~~~C 96 (215)
T 2gtl_O 53 PSCDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDEKD-CTLPTK 96 (215)
T ss_dssp CSSCTTEEECCSSSCCEEEGGGTTSSSCCSSSCHHHHC-CCCSSC
T ss_pred CCCCCcceeeCCCCCcCccccccCCCCCcCCCcccccC-CCCCCc
Confidence 3588999999 79999999999999999999999987 976544
No 20
>2gtl_N Extracellular hemoglobin linker L2 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Probab=99.08 E-value=1.1e-10 Score=82.28 Aligned_cols=43 Identities=28% Similarity=0.653 Sum_probs=37.3
Q ss_pred cCCCCCCCCeEeec--CCceeccCcccCCcCCCCCCCCCC--CCCCCC
Q psy5508 22 LQHHQCRISEYACE--NGRCISLDRFCNEYDDCGDKSDEP--RYCSRS 65 (85)
Q Consensus 22 ~~~~~C~~~~f~C~--~g~Ci~~~~~CDg~~DC~DgSDE~--~~C~~~ 65 (85)
.....|+..+|+|. +|+||+..|+|||..||.|||||. + |...
T Consensus 48 ~~~~~C~~~eFqC~~~~g~CIp~~wvCDG~~DC~DGSDE~~~~-C~~~ 94 (220)
T 2gtl_N 48 IEGTHCEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPDV-CDTS 94 (220)
T ss_dssp HHCCSSCTTEEECCSSSCCEEETTTTTSSSCCSTTCTTSCGGG-GCGG
T ss_pred CCCCCCCCCccCcCCCCCcEeCcceecCCCCCCCCCCccCccc-CCCC
Confidence 34568999999995 689999999999999999999996 5 8755
No 21
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.88 E-value=1.9e-10 Score=92.19 Aligned_cols=39 Identities=33% Similarity=0.837 Sum_probs=0.0
Q ss_pred cCCCCCCCCeEeecCCceeccCcccCCcCCCCCCCCCCC
Q psy5508 22 LQHHQCRISEYACENGRCISLDRFCNEYDDCGDKSDEPR 60 (85)
Q Consensus 22 ~~~~~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgSDE~~ 60 (85)
.....|+.++|+|.+|+||+..|+|||..||.|||||.+
T Consensus 19 ~~~~~C~~~~f~C~~g~Ci~~~~~CDg~~dC~D~sDE~~ 57 (791)
T 3m0c_C 19 AVGDRCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQ 57 (791)
T ss_dssp ---------------------------------------
T ss_pred cccCCcCcCccCCCCCCEEehhhcCCCCccCCCCCcccc
Confidence 445689999999999999999999999999999999974
No 22
>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}
Probab=98.86 E-value=2e-09 Score=83.44 Aligned_cols=34 Identities=44% Similarity=1.084 Sum_probs=32.0
Q ss_pred CeEeec-CCceeccCcccCCcCCCCCCCCCCCCCCC
Q psy5508 30 SEYACE-NGRCISLDRFCNEYDDCGDKSDEPRYCSR 64 (85)
Q Consensus 30 ~~f~C~-~g~Ci~~~~~CDg~~DC~DgSDE~~~C~~ 64 (85)
.+|+|. ||+||+..|+|||.+||+|+|||.+ |..
T Consensus 69 ~~f~C~~~g~Ci~~~~~Cdg~~dC~d~sdE~~-c~~ 103 (537)
T 3ojy_B 69 EGFVCAQTGRCVNRRLLCNGDNDCGDQSDEAN-CRR 103 (537)
T ss_dssp SSEECTTTCCEECGGGTTSSSCCSSSSCTTSS-CSS
T ss_pred CccCcCCCCcEeeccccCCCCCCCCCcccccc-CCC
Confidence 689999 9999999999999999999999987 875
No 23
>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}
Probab=98.82 E-value=2.8e-09 Score=83.03 Aligned_cols=38 Identities=39% Similarity=0.911 Sum_probs=33.9
Q ss_pred CCCCCeEeec-CCceeccCcccCCcCCCCCCCCCCCCCCCC
Q psy5508 26 QCRISEYACE-NGRCISLDRFCNEYDDCGDKSDEPRYCSRS 65 (85)
Q Consensus 26 ~C~~~~f~C~-~g~Ci~~~~~CDg~~DC~DgSDE~~~C~~~ 65 (85)
.|+ .+|+|. +|+||+..|+|||..||+|+|||.+ |...
T Consensus 65 ~c~-~~f~C~~~g~Ci~~~~~Cdg~~dC~d~sDE~~-C~~~ 103 (554)
T 3ojy_A 65 QCG-QDFQCKETGRCLKRHLVCNGDQDCLDGSDEDD-CEDV 103 (554)
T ss_dssp CCS-SSEECSSSCCEECGGGTTSSSCCSSSCTTSSS-CCSC
T ss_pred CCC-CcCccCCCCEEcccccccCCcccCCCcccccc-CCCC
Confidence 454 689999 9999999999999999999999987 8753
No 24
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.63 E-value=2e-08 Score=78.92 Aligned_cols=39 Identities=38% Similarity=0.848 Sum_probs=31.2
Q ss_pred CCCCCeEeecCCceeccCcccCCcCCCCCCCCCCCCCCCC
Q psy5508 26 QCRISEYACENGRCISLDRFCNEYDDCGDKSDEPRYCSRS 65 (85)
Q Consensus 26 ~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgSDE~~~C~~~ 65 (85)
.|+..+|+|.+|+||+..|+|||..||.|||||.+ |...
T Consensus 87 ~C~~~~f~C~~g~Ci~~~~~Cdg~~dC~dgsDE~~-C~~~ 125 (699)
T 1n7d_A 87 TCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDEAS-CPVL 125 (699)
T ss_dssp CCCSSCCCSSCC----CCCTTCSSCCSSSSCSSSS-CCCC
T ss_pred ccccCcEEcCCCCEecHHHcCCCcCcCCCCCccCC-cCcc
Confidence 57788999999999999999999999999999986 8653
No 25
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.63 E-value=1.9e-08 Score=79.05 Aligned_cols=39 Identities=38% Similarity=0.793 Sum_probs=35.2
Q ss_pred CCCCCCeEeecCCceeccCcccCCcCCCCCCCCCCCCCCC
Q psy5508 25 HQCRISEYACENGRCISLDRFCNEYDDCGDKSDEPRYCSR 64 (85)
Q Consensus 25 ~~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgSDE~~~C~~ 64 (85)
..|+..+|+|.+|+||+.+|+|||+.||.|||||.+ |..
T Consensus 174 ~~C~~~~f~C~~g~Ci~~~~~CDg~~dC~dgsDE~~-C~~ 212 (699)
T 1n7d_A 174 SPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEEN-CAV 212 (699)
T ss_dssp CCSCSSSCCCSSSCCCSTTCTTSSSCCSTTSCSSCS-CCC
T ss_pred CCCCCcceecCCCceEechhccCCCCCCCCCccccc-CCC
Confidence 468888999999999999999999999999999986 864
No 26
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens}
Probab=98.61 E-value=1.7e-08 Score=78.06 Aligned_cols=40 Identities=35% Similarity=0.737 Sum_probs=30.3
Q ss_pred CCCCCC-CeEeecCCceeccCcccCCcCCCCCCCCCCCCCCC
Q psy5508 24 HHQCRI-SEYACENGRCISLDRFCNEYDDCGDKSDEPRYCSR 64 (85)
Q Consensus 24 ~~~C~~-~~f~C~~g~Ci~~~~~CDg~~DC~DgSDE~~~C~~ 64 (85)
...|+. .+|+|.+|+||+..++|||+.||.|+|||.+ |..
T Consensus 200 ~~~c~~~~~~~C~~~~ci~~~~~Cdg~~dC~d~sDE~~-C~~ 240 (565)
T 2xrc_A 200 KADSPMDDFFQCVNGKYISQMKACDGINDCGDQSDELC-CKA 240 (565)
T ss_dssp ---------CBCTTSCBCCTTSTTSSSCCSSSSSSSSS-BSS
T ss_pred ccCCCCcCeeECCCCCccCHHHcCCCcccCCCCccccc-ccc
Confidence 344554 4599999999999999999999999999986 864
No 27
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.51 E-value=1.2e-08 Score=81.73 Aligned_cols=39 Identities=38% Similarity=0.848 Sum_probs=0.0
Q ss_pred CCCCCeEeecCCceeccCcccCCcCCCCCCCCCCCCCCCC
Q psy5508 26 QCRISEYACENGRCISLDRFCNEYDDCGDKSDEPRYCSRS 65 (85)
Q Consensus 26 ~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgSDE~~~C~~~ 65 (85)
.|+..+|+|.+|+||+..|+|||+.||.|||||.+ |...
T Consensus 105 ~C~~~~f~C~~g~Ci~~~~~CDg~~dC~dgsDE~~-C~~~ 143 (791)
T 3m0c_C 105 TCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDEAS-CPVL 143 (791)
T ss_dssp ----------------------------------------
T ss_pred cccCCeEECCCCCEECHHHcCCCcccCCCCccccc-cccc
Confidence 57778999999999999999999999999999986 8643
No 28
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B*
Probab=98.47 E-value=1.2e-07 Score=76.91 Aligned_cols=34 Identities=47% Similarity=1.077 Sum_probs=31.9
Q ss_pred CeEeecCCceeccCcccCCcCCCCCCCCCCCCCCC
Q psy5508 30 SEYACENGRCISLDRFCNEYDDCGDKSDEPRYCSR 64 (85)
Q Consensus 30 ~~f~C~~g~Ci~~~~~CDg~~DC~DgSDE~~~C~~ 64 (85)
..|+|.+|+||+..|+|||.+||+|+|||.+ |..
T Consensus 121 ~~F~C~~g~ci~~~~~c~g~~dC~d~sde~~-C~~ 154 (913)
T 3t5o_A 121 NKFRCDSGRCIARKLECNGENDCGDNSDERD-CGR 154 (913)
T ss_dssp SEEECTTSCEEEGGGSSSSSCCSSSSGGGTT-CSS
T ss_pred cccccCCCceEccceecCCcccCCCcccccc-CCC
Confidence 5699999999999999999999999999987 975
No 29
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens}
Probab=98.00 E-value=4.1e-06 Score=64.73 Aligned_cols=38 Identities=32% Similarity=0.677 Sum_probs=34.4
Q ss_pred CCCCCeEeecCCceeccCcccCCcCCCCCCCCCCCCCCC
Q psy5508 26 QCRISEYACENGRCISLDRFCNEYDDCGDKSDEPRYCSR 64 (85)
Q Consensus 26 ~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgSDE~~~C~~ 64 (85)
.|++.+|+|.++.|++..++|||..||.||+||.+ |..
T Consensus 240 ~c~~~~~~C~~~~C~~~~~~cdG~~dC~~gsDE~~-C~~ 277 (565)
T 2xrc_A 240 ACQGKGFHCKSGVCIPSQYQCNGEVDCITGEDEVG-CAG 277 (565)
T ss_dssp SCSSSCEEETTTEEECGGGTTSSSCCSSSCTTSSS-CC-
T ss_pred ccCCCceecCCCcccCccccCCCcccCCCCccccC-cCC
Confidence 37788999999999999999999999999999986 874
No 30
>1hvw_A Omega-ACTX-HV1A, omega-atracotoxin-HV1A; cystine knot, beta-hairpin; NMR {Synthetic} SCOP: g.3.6.2
Probab=29.01 E-value=32 Score=16.02 Aligned_cols=15 Identities=27% Similarity=0.742 Sum_probs=7.0
Q ss_pred CCCCCeEeecCCceec
Q psy5508 26 QCRISEYACENGRCIS 41 (85)
Q Consensus 26 ~C~~~~f~C~~g~Ci~ 41 (85)
.|+..+ .|-+|.|.+
T Consensus 7 ~Cp~~e-~CCSGsCt~ 21 (26)
T 1hvw_A 7 PCPYNE-NCCSQSCTG 21 (26)
T ss_dssp BCSSTT-SBSSCCEET
T ss_pred cCCCCc-ccccccccc
Confidence 354433 344556654
No 31
>1i8x_A Granulin-1; two beta-hairpin stack, cytokine; NMR {Synthetic} SCOP: g.3.16.1 PDB: 1qgm_A 1i8y_A
Probab=24.02 E-value=28 Score=16.74 Aligned_cols=12 Identities=25% Similarity=0.628 Sum_probs=9.3
Q ss_pred ccCCcCCCCCCC
Q psy5508 45 FCNEYDDCGDKS 56 (85)
Q Consensus 45 ~CDg~~DC~DgS 56 (85)
+||....|.|++
T Consensus 3 ~CD~~~~CP~~~ 14 (30)
T 1i8x_A 3 HCDAATICPDGT 14 (30)
T ss_dssp CTTTTCCCCTTE
T ss_pred cCCCCccCCCCC
Confidence 588888888765
Done!