RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5508
(85 letters)
>2fyj_A Low-density lipoprotein receptor-related protein 1; double
module, complement type repeat, calcium, beta-2
hairpin, loop-structures; NMR {Homo sapiens} PDB:
2fyl_B
Length = 82
Score = 45.7 bits (109), Expect = 2e-08
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 25 HQCRISEYACENGRCISLDRFCNEYDDCGDKSDEPRYCSRSKT 67
C ++++C +GRCI + C+ DDCGD+SDE C+
Sbjct: 3 RTCPPNQFSCASGRCIPISWTCDLDDDCGDRSDESASCAYPTC 45
Score = 42.7 bits (101), Expect = 3e-07
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 24 HHQCRISEYACENGRCISLDRFCNEYDDCGDKSDE 58
++++ C NGRCI+++ C+ +DCGD SDE
Sbjct: 43 PTCFPLTQFTCNNGRCININWRCDNDNDCGDNSDE 77
>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand
binding, calcium binding, complement-like repeat, LRP
receptor, signaling protein; 1.85A {Homo sapiens} SCOP:
g.12.1.1
Length = 44
Score = 44.6 bits (106), Expect = 3e-08
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 25 HQCRISEYACENGRCISLDRFCNEYDDCGDKSDE 58
H C +++ C +GRCI C+ +DCGD SDE
Sbjct: 3 HSCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDE 36
>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium
binding, complement-like repeat, signaling protein; NMR
{Homo sapiens} SCOP: g.12.1.1
Length = 45
Score = 44.2 bits (105), Expect = 3e-08
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 25 HQCRISEYACENGRCISLDRFCNEYDDCGDKSDE 58
QC+ E+AC N RCI C+ +DC D SDE
Sbjct: 4 PQCQPGEFACANSRCIQERWKCDGDNDCLDNSDE 37
>3a7q_B Low-density lipoprotein receptor-related protein; signaling
protein; HET: NAG; 2.60A {Homo sapiens}
Length = 44
Score = 43.8 bits (104), Expect = 5e-08
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 25 HQCRISEYACENGRCISLDRFCNEYDDCGDKSDE 58
+C ++ C N RCI C+E DDC D SDE
Sbjct: 6 KECEKDQFQCRNERCIPSVWRCDEDDDCLDHSDE 39
>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein
complex, RAP, escort protein, calcium- binding; 1.26A
{Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B
Length = 80
Score = 44.6 bits (106), Expect = 6e-08
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 27 CRISEYACENGRCISLDRFCNEYDDCGDKSDE 58
C +E+ C +G+CIS C+ DC D SDE
Sbjct: 3 CSQAEFRCHDGKCISRQFVCDSDRDCLDGSDE 34
Score = 42.6 bits (101), Expect = 4e-07
Identities = 11/36 (30%), Positives = 15/36 (41%)
Query: 23 QHHQCRISEYACENGRCISLDRFCNEYDDCGDKSDE 58
C + + C + CI C+ DC D SDE
Sbjct: 38 PVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDE 73
>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor,
cysteine-rich module, calcium; 1.70A {Homo sapiens}
SCOP: g.12.1.1
Length = 37
Score = 42.2 bits (100), Expect = 2e-07
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 27 CRISEYACENGRCISLDRFCNEYDDCGDKSDE 58
C E+ C +G CI C+ DC DKSDE
Sbjct: 2 CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDE 33
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen
activating factor, S protease, complement system; HET:
NAG; 2.69A {Homo sapiens}
Length = 565
Score = 41.8 bits (98), Expect = 4e-06
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 27 CRISEYACENGRCISLDRFCNEYDDCGDKSDEPRYCSR 64
+ C NG+ IS + C+ +DCGD+SDE C
Sbjct: 204 PMDDFFQCVNGKYISQMKACDGINDCGDQSDE-LCCKA 240
Score = 28.3 bits (63), Expect = 0.21
Identities = 11/38 (28%), Positives = 15/38 (39%)
Query: 26 QCRISEYACENGRCISLDRFCNEYDDCGDKSDEPRYCS 63
C+ + C++G CI CN DC DE
Sbjct: 240 ACQGKGFHCKSGVCIPSQYQCNGEVDCITGEDEVGCAG 277
Score = 27.2 bits (60), Expect = 0.71
Identities = 8/37 (21%), Positives = 9/37 (24%), Gaps = 2/37 (5%)
Query: 26 QCRISEYACENGRCISLDRFCNEYDDCGDKSDEPRYC 62
CR E C R Y D D +
Sbjct: 167 HCRGLE--TSLAECTFTKRRTMGYQDFADVVCYTQKA 201
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex,
beta propeller, cholesterol clearance, PCSK
autocatalytic cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 42.1 bits (98), Expect = 4e-06
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 24 HHQCRISEYACENGRCISLDRFCNEYDDCGDKSDEPRYCSRSKT 67
+C +E+ C++G+CIS C+ +C D SDE + S T
Sbjct: 21 GDRCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVT 64
Score = 39.4 bits (91), Expect = 3e-05
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 25 HQCRISEYACENGRCISLDRFCNEYDDCGDKSDE 58
C E+ C +G+CIS C+ DC D SDE
Sbjct: 104 KTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDE 137
Score = 39.0 bits (90), Expect = 4e-05
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 27 CRISEYACENGRCISLDRFCNEYDDCGDKSDEPRYC 62
+++ C +G CI+LD+ CN DC D SDEP
Sbjct: 274 EGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKE 309
Score = 37.9 bits (87), Expect = 9e-05
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 25 HQCRISEYACENGRCISLDRFCNEYDDCGDKSDE 58
C E+ C +G CI C+ DC DKSDE
Sbjct: 192 SPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDE 225
Score = 37.9 bits (87), Expect = 1e-04
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 26 QCRISEYACENGRCISLDRFCNEYDDCGDKSDEP 59
CR E+ C +G CI R C+ DC D SDE
Sbjct: 232 TCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEV 265
Score = 37.5 bits (86), Expect = 1e-04
Identities = 13/55 (23%), Positives = 18/55 (32%)
Query: 20 QQLQHHQCRISEYACENGRCISLDRFCNEYDDCGDKSDEPRYCSRSKTALQKHIT 74
C + + C + CI C+ DC D SDE R Q +
Sbjct: 138 ASCPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSS 192
Score = 35.6 bits (81), Expect = 7e-04
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 24 HHQCRISEYACEN--GRCISLDRFCNEYDDCGDKSDE 58
C+ +++C RCI C+ DC + SDE
Sbjct: 62 SVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDE 98
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB:
2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 40.2 bits (93), Expect = 2e-05
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 25 HQCRISEYACENGRCISLDRFCNEYDDCGDKSDEPRYCSRSKT 67
+C +E+ C++G+CIS C+ +C D SDE + S T
Sbjct: 4 DRCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVT 46
Score = 39.8 bits (92), Expect = 2e-05
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 26 QCRISEYACENGRCISLDRFCNEYDDCGDKSDE 58
CR E+ C +G CI R C+ DC D SDE
Sbjct: 214 TCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDE 246
Score = 38.6 bits (89), Expect = 6e-05
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 27 CRISEYACENGRCISLDRFCNEYDDCGDKSDEPRYC 62
+++ C +G CI+LD+ CN DC D SDEP
Sbjct: 256 EGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKE 291
Score = 37.5 bits (86), Expect = 1e-04
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 25 HQCRISEYACENGRCISLDRFCNEYDDCGDKSDE 58
C E+ C +G+CIS C+ DC D SDE
Sbjct: 86 KTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDE 119
Score = 36.7 bits (84), Expect = 3e-04
Identities = 13/51 (25%), Positives = 18/51 (35%)
Query: 24 HHQCRISEYACENGRCISLDRFCNEYDDCGDKSDEPRYCSRSKTALQKHIT 74
C + + C + CI C+ DC D SDE R Q +
Sbjct: 124 VLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSS 174
Score = 35.9 bits (82), Expect = 6e-04
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 24 HHQCRISEYACENGRCISLDRFCNEYDDCGDKSDEPRYCSRS 65
C E+ C +G CI C+ DC DKSDE +
Sbjct: 173 SSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCAVAT 214
Score = 35.2 bits (80), Expect = 9e-04
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 23 QHHQCRISEYACEN--GRCISLDRFCNEYDDCGDKSDE 58
C+ +++C RCI C+ DC + SDE
Sbjct: 43 LSVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDE 80
Score = 24.0 bits (51), Expect = 8.1
Identities = 10/60 (16%), Positives = 20/60 (33%)
Query: 20 QQLQHHQCRISEYACENGRCISLDRFCNEYDDCGDKSDEPRYCSRSKTALQKHITAVFCI 79
+ + E C +G + R C + D+C D + C + + F +
Sbjct: 305 SHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQL 364
>1cr8_A Protein (LOW density lipoprotein receptor related protein);
ligand binding, calcium binding, LDLR, LRP, lipid
binding protein; NMR {Homo sapiens} SCOP: g.12.1.1
Length = 42
Score = 36.5 bits (85), Expect = 4e-05
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 25 HQCRISEYACE-NGRCISLDRFCNEYDDCGDKSDE 58
C E+ C +G CI L C+ DC D SDE
Sbjct: 2 GGCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDE 36
>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich
repeat, ligand binding domain, calcium CAGE, ligand
binding protein; NMR {Rattus norvegicus}
Length = 48
Score = 36.5 bits (85), Expect = 4e-05
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 23 QHHQCRISEYACENGR-CISLDRFCNEYDDCGDKSDE 58
C +++ C +G CI+ C+ DC D SDE
Sbjct: 3 MVLNCTSAQFKCADGSSCINSRYRCDGVYDCRDNSDE 39
>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling
protein; NMR {Homo sapiens}
Length = 43
Score = 36.2 bits (84), Expect = 5e-05
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 23 QHHQCRISEYACENG-RCISLDRFCNEYDDCGDKSDE 58
Q +C + + C N +C+ CN DDCG+++DE
Sbjct: 3 QDVKCSLGYFPCGNITKCLPQLLHCNGVDDCGNQADE 39
>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand
binding module, ligand binding repeat, compleme repeat,
protein binding; NMR {Homo sapiens}
Length = 50
Score = 35.0 bits (81), Expect = 2e-04
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 23 QHHQCRISEYACENG-RCISLDRFCNEYDDCGDKSDE 58
+ C S ++C C+ C+ DC D +DE
Sbjct: 3 EGKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADE 39
>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory
protein, hexagonal bilayer, dihedral D6 symmetry; HET:
HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1
g.12.1.1 h.1.32.1
Length = 217
Score = 37.2 bits (85), Expect = 2e-04
Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
Query: 18 SLQQLQHHQCRISEYACEN--GRCISLDRFCNEYDDCGDKSDE-PRYCS 63
+ L+ H C E C CI FC+ DC D SDE P CS
Sbjct: 45 RISNLEEHHCDEHESECRGDVPECIHDLLFCDGEKDCRDGSDEDPETCS 93
>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid
erythrocruorins, respiratory protein, hexagonal
bilayer, dihedral D6 symmetry; HET: HEM; 3.50A
{Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Length = 215
Score = 36.7 bits (84), Expect = 2e-04
Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 19 LQQLQHHQCRISEYAC--ENGRCISLDRFCNEYDDCGDKSDE 58
+++L+ C E+ C ++ +CIS C+ ++DC + DE
Sbjct: 47 VEELEDPSCDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDE 88
>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta
hairpin, 3-10 helix, calcium binding, membrane protein;
NMR {Coturnix coturnix} SCOP: g.12.1.1
Length = 47
Score = 34.4 bits (79), Expect = 3e-04
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 5/41 (12%)
Query: 23 QHHQCRISEYACE-----NGRCISLDRFCNEYDDCGDKSDE 58
+ C ++ C +G C D C+ + DC D DE
Sbjct: 3 EFGSCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 43
>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800
and PG950; disulfide bond, alpha helix, calcium CAGE,
signaling protein; NMR {Coturnix japonica} SCOP:
g.12.1.1
Length = 47
Score = 33.2 bits (76), Expect = 8e-04
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 5/38 (13%)
Query: 26 QCRISEYACE-----NGRCISLDRFCNEYDDCGDKSDE 58
+C ++ C +G C D C+ + DC D DE
Sbjct: 4 RCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 41
>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding
module, COMP repeat, calcium, cell membrane, coated
PIT, cytoplasm, DEVE protein; NMR {Homo sapiens}
Length = 80
Score = 33.7 bits (77), Expect = 0.001
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 23 QHHQCRISEYACEN-GRCISLDRFCNEYDDCGDKSDE 58
+ C S ++C C+ C+ DC D +DE
Sbjct: 5 EGKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADE 41
>2gtl_N Extracellular hemoglobin linker L2 subunit; annelid
erythrocruorins, respiratory protein, hexagonal
bilayer, dihedral D6 symmetry; HET: HEM; 3.50A
{Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Length = 220
Score = 34.9 bits (79), Expect = 0.001
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 19 LQQLQHHQCRISEYACE--NGRCISLDRFCNEYDDCGDKSDE-PRYCSRS 65
+ +++ C + C CIS C+ + DC + DE P C S
Sbjct: 45 VTKIEGTHCEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPDVCDTS 94
>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor,
virus-protein complex, icosahedral virus, ATP-binding,
capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB:
1v9u_5*
Length = 39
Score = 31.9 bits (73), Expect = 0.002
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 27 CRISEYACENG--RCISLDRFCNEYDDCGDKSDE 58
CRI E +C +CI + C+ +DC DE
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDE 34
>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune
system; HET: TPO BMA; 2.51A {Homo sapiens}
Length = 537
Score = 26.8 bits (58), Expect = 0.98
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 34 CENGRCISLDRFCNEYDDCGDKSDEPRYCSRSKTALQKHI 73
+ GRC++ CN +DCGD+SDE K +
Sbjct: 74 AQTGRCVNRRLLCNGDNDCGDQSDEANCRRIYKKCQHEMD 113
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.1 bits (56), Expect = 1.3
Identities = 5/24 (20%), Positives = 12/24 (50%)
Query: 20 QQLQHHQCRISEYACENGRCISLD 43
Q L+ Q + YA ++ +++
Sbjct: 20 QALKKLQASLKLYADDSAPALAIK 43
>1xta_A Natrin 1; crisp, serine protease, ION channel blocking, cobra,
toxin; 1.58A {Naja atra} PDB: 2giz_A 1xx5_A 3mz8_A
1rc9_A 1wvr_A
Length = 221
Score = 26.0 bits (57), Expect = 1.5
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 33 ACENGRCISLDRFCNEYDDCGDKSDE 58
AC+NG C + N+ +C +
Sbjct: 173 ACDNGLCTNPCTIYNKLTNCDSLLKQ 198
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex,
innate IMMU system, blood, membrane, cytolysin, immune
SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens}
PDB: 4a5w_B* 4e0s_B*
Length = 913
Score = 25.6 bits (55), Expect = 2.6
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 34 CENGRCISLDRFCNEYDDCGDKSDEPRYCSRSKTALQKH 72
C++GRCI+ CN +DCGD SDE +K+
Sbjct: 125 CDSGRCIARKLECNGENDCGDNSDERDCGRTKAVCTRKY 163
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 25.2 bits (55), Expect = 3.2
Identities = 6/33 (18%), Positives = 7/33 (21%)
Query: 27 CRISEYACENGRCISLDRFCNEYDDCGDKSDEP 59
CR S + F E D
Sbjct: 283 CRHSIPVFCHSSFYHDTDFLGEELDIVAAKSHE 315
>1qle_C Cytochrome C oxidase polypeptide III; oxidoreductase/immune system,
complex (oxidoreductase/antibody), electron transport;
HET: HEA PC1; 3.0A {Paracoccus denitrificans} SCOP:
f.25.1.1
Length = 273
Score = 24.5 bits (54), Expect = 5.2
Identities = 7/19 (36%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
Query: 8 VLLGSCFLVVSL-QQLQHH 25
V++G+ FL V L + L+
Sbjct: 220 VIIGTIFLFVCLIRLLKGQ 238
>1v54_C Cytochrome C oxidase polypeptide III; oxidoreductase; HET: FME TPO
HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus}
SCOP: f.25.1.1 PDB: 1v55_C* 2dyr_C* 2eij_C* 2eik_C*
2eil_C* 2eim_C* 2ein_C* 2y69_C* 2ybb_N* 2zxw_C* 3abk_C*
3abl_C* 3abm_C* 3ag1_C* 3ag2_C* 3ag3_C* 3ag4_C* 3asn_C*
3aso_C* 2occ_C* ...
Length = 261
Score = 24.4 bits (54), Expect = 5.2
Identities = 9/19 (47%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
Query: 8 VLLGSCFLVVSL-QQLQHH 25
V++GS FL+V +QL+ H
Sbjct: 208 VIIGSTFLIVCFFRQLKFH 226
>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune
system; HET: TPO BMA; 2.51A {Homo sapiens}
Length = 554
Score = 24.6 bits (52), Expect = 5.7
Identities = 14/35 (40%), Positives = 15/35 (42%)
Query: 26 QCRISEYACENGRCISLDRFCNEYDDCGDKSDEPR 60
QC E GRC+ CN DC D SDE
Sbjct: 65 QCGQDFQCKETGRCLKRHLVCNGDQDCLDGSDEDD 99
>2ddb_A Pseudecin, channel blocker; crisp, snake venom, CNG channel, toxin;
1.90A {Pseudechis porphyriacus} PDB: 2epf_A 2dda_A
Length = 210
Score = 24.1 bits (52), Expect = 5.9
Identities = 6/28 (21%), Positives = 14/28 (50%)
Query: 33 ACENGRCISLDRFCNEYDDCGDKSDEPR 60
AC N C + + N++ +C + + +
Sbjct: 162 ACVNRLCTNPCNYNNDFSNCKSLAKKSK 189
>1m56_C Cytochrome C oxidase; membrane protein, oxidoreductase; HET: HEA
PEH; 2.30A {Rhodobacter sphaeroides} SCOP: f.25.1.1 PDB:
1m57_C*
Length = 266
Score = 24.4 bits (54), Expect = 6.1
Identities = 7/19 (36%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Query: 8 VLLGSCFLVVSL-QQLQHH 25
V++G+ FL+V L + + H
Sbjct: 213 VIVGTIFLLVCLIRVQRGH 231
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET:
TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A*
3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 2hiz_A* 2p83_A*
2va7_A* 2va5_A* 2va6_A*
Length = 455
Score = 24.1 bits (52), Expect = 7.4
Identities = 7/29 (24%), Positives = 10/29 (34%)
Query: 1 MFPITGWVLLGSCFLVVSLQQLQHHQCRI 29
M +TG +G V H R+
Sbjct: 1 MASMTGGQQMGRGSAGVLPAHGTQHGIRL 29
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 24.0 bits (51), Expect = 8.4
Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 9/40 (22%)
Query: 21 QLQHHQCRISEYACENGRCISLDRFCNEYDDCGDKSDEPR 60
+ Q+ I + D F + +D C D D P+
Sbjct: 13 EHQYQYKDILS--------VFEDAFVDNFD-CKDVQDMPK 43
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.328 0.140 0.466
Gapped
Lambda K H
0.267 0.0594 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,281,701
Number of extensions: 58810
Number of successful extensions: 321
Number of sequences better than 10.0: 1
Number of HSP's gapped: 317
Number of HSP's successfully gapped: 69
Length of query: 85
Length of database: 6,701,793
Length adjustment: 53
Effective length of query: 32
Effective length of database: 5,221,980
Effective search space: 167103360
Effective search space used: 167103360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (23.7 bits)