RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5508
(85 letters)
>d1j8ea_ g.12.1.1 (A:) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 44
Score = 43.6 bits (103), Expect = 2e-08
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 24 HHQCRISEYACENGRCISLDRFCNEYDDCGDKSDEP 59
H C +++ C +GRCI C+ +DCGD SDE
Sbjct: 2 SHSCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDET 37
>d1d2la_ g.12.1.1 (A:) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 45
Score = 43.2 bits (102), Expect = 3e-08
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 25 HQCRISEYACENGRCISLDRFCNEYDDCGDKSDEP 59
QC+ E+AC N RCI C+ +DC D SDE
Sbjct: 4 PQCQPGEFACANSRCIQERWKCDGDNDCLDNSDEA 38
>d1f8za_ g.12.1.1 (A:) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 41.6 bits (98), Expect = 1e-07
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 27 CRISEYACENGRCISLDRFCNEYDDCGDKSDE 58
CR E+ C +G CI R C+ DC D SDE
Sbjct: 3 CRPDEFQCSDGNCIHGSRQCDREYDCKDMSDE 34
>d2fcwb1 g.12.1.1 (B:86-124) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 41.2 bits (97), Expect = 2e-07
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 27 CRISEYACENGRCISLDRFCNEYDDCGDKSDE 58
C +E+ C +G+CIS C+ DC D SDE
Sbjct: 3 CSQAEFRCHDGKCISRQFVCDSDRDCLDGSDE 34
>d2fcwb2 g.12.1.1 (B:125-163) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 41.3 bits (97), Expect = 2e-07
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 27 CRISEYACENGRCISLDRFCNEYDDCGDKSDEP 59
C + + C + CI C+ DC D SDE
Sbjct: 3 CGPASFQCNSSTCIPQLWACDNDPDCEDGSDEW 35
>d1ajja_ g.12.1.1 (A:) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 37
Score = 40.9 bits (96), Expect = 2e-07
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 27 CRISEYACENGRCISLDRFCNEYDDCGDKSDE 58
C E+ C +G CI C+ DC DKSDE
Sbjct: 2 CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDE 33
>d1f5ya1 g.12.1.1 (A:1-44) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 44
Score = 41.0 bits (96), Expect = 2e-07
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 26 QCRISEYACENGRCISLDRFCNEYDDCGDKSDE 58
+C +E+ C++G+CIS C+ +C D SDE
Sbjct: 7 RCERNEFQCQDGKCISYKWVCDGSAECQDGSDE 39
>d1xfea2 g.12.1.1 (A:1-44) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 44
Score = 40.2 bits (94), Expect = 5e-07
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 30 SEYACENGRCISLDRFCNEYDDCGDKSDEP 59
+++ C +G CI+LD+ CN DC D SDEP
Sbjct: 10 NKFKCHSGECITLDKVCNMARDCRDWSDEP 39
>d2gtlm2 g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Common
earthworm (Lumbricus terrestris) [TaxId: 6398]}
Length = 42
Score = 37.9 bits (88), Expect = 3e-06
Identities = 17/42 (40%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 25 HQCRISEYACEN--GRCISLDRFCNEYDDCGDKSDE-PRYCS 63
H C E C CI FC+ DC D SDE P CS
Sbjct: 1 HHCDEHESECRGDVPECIHDLLFCDGEKDCRDGSDEDPETCS 42
>d1cr8a_ g.12.1.1 (A:) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 42
Score = 35.9 bits (83), Expect = 2e-05
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 27 CRISEYACE-NGRCISLDRFCNEYDDCGDKSDE 58
C E+ C +G CI L C+ DC D SDE
Sbjct: 4 CHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDE 36
>d2gtlo2 g.12.1.1 (O:60-100) Extracellular hemoglobin linker l3
subunit {Common earthworm (Lumbricus terrestris)
[TaxId: 6398]}
Length = 41
Score = 35.6 bits (82), Expect = 3e-05
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 27 CRISEYAC--ENGRCISLDRFCNEYDDCGDKSDE 58
C E+ C ++ +CIS C+ ++DC + DE
Sbjct: 3 CDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDE 36
>d2gtln2 g.12.1.1 (N:61-101) Extracellular hemoglobin linker l2
subunit {Common earthworm (Lumbricus terrestris)
[TaxId: 6398]}
Length = 41
Score = 35.2 bits (81), Expect = 4e-05
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 26 QCRISEYACEN--GRCISLDRFCNEYDDCGDKSDE 58
C + C CIS C+ + DC + DE
Sbjct: 1 HCEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDE 35
>d1v9u5_ g.12.1.1 (5:) Very low-density lipoprotein receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 39
Score = 34.4 bits (79), Expect = 7e-05
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 27 CRISEYACENG--RCISLDRFCNEYDDCGDKSDE 58
CRI E +C +CI + C+ +DC DE
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDE 34
>d1f5ya2 g.12.1.1 (A:45-85) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 41
Score = 34.4 bits (79), Expect = 7e-05
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 26 QCRISEYACE--NGRCISLDRFCNEYDDCGDKSDE 58
C+ +++C RCI C+ DC + SDE
Sbjct: 4 TCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDE 38
>d1k7ba_ g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quail
(Coturnix coturnix) [TaxId: 9091]}
Length = 42
Score = 33.7 bits (77), Expect = 2e-04
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 5/37 (13%)
Query: 27 CRISEYACEN-----GRCISLDRFCNEYDDCGDKSDE 58
C ++ C G C D C+ + DC D DE
Sbjct: 2 CPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 38
>d1uwka_ e.51.1.1 (A:) Urocanate hydratase HutU {Pseudomonas putida
[TaxId: 303]}
Length = 554
Score = 23.6 bits (51), Expect = 4.4
Identities = 3/22 (13%), Positives = 11/22 (50%)
Query: 55 KSDEPRYCSRSKTALQKHITAV 76
+++ +K ++ H+ A+
Sbjct: 286 QTEPAAVVKAAKQSMAVHVQAM 307
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.328 0.140 0.466
Gapped
Lambda K H
0.267 0.0639 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 323,717
Number of extensions: 12867
Number of successful extensions: 63
Number of sequences better than 10.0: 1
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 26
Length of query: 85
Length of database: 2,407,596
Length adjustment: 50
Effective length of query: 35
Effective length of database: 1,721,096
Effective search space: 60238360
Effective search space used: 60238360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (22.1 bits)