Query psy5512
Match_columns 245
No_of_seqs 97 out of 99
Neff 5.1
Searched_HMMs 46136
Date Fri Aug 16 19:22:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5512.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5512hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0260|consensus 55.8 2.7E+02 0.0059 31.6 13.5 7 78-84 1453-1459(1605)
2 KOG0260|consensus 44.5 2.5E+02 0.0053 31.9 11.1 7 78-84 1481-1487(1605)
3 PF07629 DUF1590: Protein of u 12.3 1.3E+02 0.0027 19.1 1.1 18 221-238 5-22 (32)
4 PRK08338 2-oxoglutarate ferred 3.7 4.6E+02 0.01 21.9 0.8 11 1-11 1-11 (170)
5 PRK06920 dnaE DNA polymerase I 2.5 6.9E+02 0.015 27.9 0.7 12 29-40 378-389 (1107)
6 PRK05673 dnaE DNA polymerase I 2.4 7.4E+02 0.016 27.7 0.8 11 29-39 393-403 (1135)
7 PF08400 phage_tail_N: Prophag 2.3 8.5E+02 0.018 20.4 0.8 8 1-8 1-8 (134)
8 cd02202 FtsZ_type2 FtsZ is a G 2.2 8.8E+02 0.019 22.9 1.0 10 1-10 1-10 (349)
9 TIGR00594 polc DNA-directed DN 2.2 8.1E+02 0.018 27.0 0.8 11 29-39 397-407 (1022)
10 PRK07279 dnaE DNA polymerase I 2.1 7.6E+02 0.016 27.4 0.4 11 29-39 335-345 (1034)
No 1
>KOG0260|consensus
Probab=55.85 E-value=2.7e+02 Score=31.57 Aligned_cols=7 Identities=29% Similarity=0.524 Sum_probs=3.0
Q ss_pred CCCCCCC
Q psy5512 78 DVKTPNI 84 (245)
Q Consensus 78 ~~~~Pdy 84 (245)
+.+.|.|
T Consensus 1453 s~tsp~y 1459 (1605)
T KOG0260|consen 1453 SPTSPNY 1459 (1605)
T ss_pred CCCCCCC
Confidence 3344444
No 2
>KOG0260|consensus
Probab=44.46 E-value=2.5e+02 Score=31.91 Aligned_cols=7 Identities=14% Similarity=0.387 Sum_probs=3.3
Q ss_pred CCCCCCC
Q psy5512 78 DVKTPNI 84 (245)
Q Consensus 78 ~~~~Pdy 84 (245)
+-+.|-|
T Consensus 1481 sptspsy 1487 (1605)
T KOG0260|consen 1481 SPTSPSY 1487 (1605)
T ss_pred CCCCCCC
Confidence 3444555
No 3
>PF07629 DUF1590: Protein of unknown function (DUF1590); InterPro: IPR011481 These hypothetical proteins in Rhodopirellula baltica have a conserved C-terminal region.
Probab=12.27 E-value=1.3e+02 Score=19.12 Aligned_cols=18 Identities=28% Similarity=0.362 Sum_probs=14.9
Q ss_pred CCcCCCCccceecccCcc
Q psy5512 221 GDVKTPKLQGNVLTTTPL 238 (245)
Q Consensus 221 ~d~~~p~~~~~~~~~~~~ 238 (245)
+|---|++.++.+|+|+-
T Consensus 5 a~~pppeislna~fptpp 22 (32)
T PF07629_consen 5 ADCPPPEISLNARFPTPP 22 (32)
T ss_pred CCCCCCcceeccccCCCh
Confidence 466678999999999985
No 4
>PRK08338 2-oxoglutarate ferredoxin oxidoreductase subunit gamma; Validated
Probab=3.74 E-value=4.6e+02 Score=21.86 Aligned_cols=11 Identities=55% Similarity=0.975 Sum_probs=8.8
Q ss_pred CceeeeccCcc
Q psy5512 1 MSILLIGIGGD 11 (245)
Q Consensus 1 ~~~~~~~~~~~ 11 (245)
|+|.|-|+|||
T Consensus 1 ~~i~i~G~gGq 11 (170)
T PRK08338 1 MQIRFAGIGGQ 11 (170)
T ss_pred CeEEEEEECcH
Confidence 77888888876
No 5
>PRK06920 dnaE DNA polymerase III DnaE; Reviewed
Probab=2.48 E-value=6.9e+02 Score=27.88 Aligned_cols=12 Identities=25% Similarity=0.216 Sum_probs=9.3
Q ss_pred CccccccCcccC
Q psy5512 29 DVKTTNIGGDVN 40 (245)
Q Consensus 29 ~~~~p~~d~~~~ 40 (245)
+++|||+|+|.-
T Consensus 378 R~smPDIDiDF~ 389 (1107)
T PRK06920 378 RVTLPDIDIDFP 389 (1107)
T ss_pred CCCCCCcccccc
Confidence 568888888773
No 6
>PRK05673 dnaE DNA polymerase III subunit alpha; Validated
Probab=2.43 E-value=7.4e+02 Score=27.69 Aligned_cols=11 Identities=18% Similarity=0.193 Sum_probs=7.9
Q ss_pred CccccccCccc
Q psy5512 29 DVKTTNIGGDV 39 (245)
Q Consensus 29 ~~~~p~~d~~~ 39 (245)
+++|||+|+|.
T Consensus 393 R~smPDIDiDf 403 (1135)
T PRK05673 393 RVSMPDFDIDF 403 (1135)
T ss_pred CCCCCCCCCcC
Confidence 45778777766
No 7
>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein. The characteristics of the protein distribution suggest prophage matches.
Probab=2.26 E-value=8.5e+02 Score=20.38 Aligned_cols=8 Identities=38% Similarity=0.758 Sum_probs=6.2
Q ss_pred Cceeeecc
Q psy5512 1 MSILLIGI 8 (245)
Q Consensus 1 ~~~~~~~~ 8 (245)
|+|+|.||
T Consensus 1 MsV~ISGv 8 (134)
T PF08400_consen 1 MSVKISGV 8 (134)
T ss_pred CeEEEEEE
Confidence 77887776
No 8
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=2.23 E-value=8.8e+02 Score=22.95 Aligned_cols=10 Identities=50% Similarity=1.109 Sum_probs=8.7
Q ss_pred CceeeeccCc
Q psy5512 1 MSILLIGIGG 10 (245)
Q Consensus 1 ~~~~~~~~~~ 10 (245)
|.|+++|||+
T Consensus 1 m~i~viGvGg 10 (349)
T cd02202 1 MRVLIIGVGQ 10 (349)
T ss_pred CEEEEEEeCC
Confidence 7899999985
No 9
>TIGR00594 polc DNA-directed DNA polymerase III (polc). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=2.23 E-value=8.1e+02 Score=26.99 Aligned_cols=11 Identities=18% Similarity=0.274 Sum_probs=0.0
Q ss_pred CccccccCccc
Q psy5512 29 DVKTTNIGGDV 39 (245)
Q Consensus 29 ~~~~p~~d~~~ 39 (245)
+++|||+|+|.
T Consensus 397 R~smPDIDiDf 407 (1022)
T TIGR00594 397 RISMPDIDIDF 407 (1022)
T ss_pred CCCCCCCcccc
No 10
>PRK07279 dnaE DNA polymerase III DnaE; Reviewed
Probab=2.13 E-value=7.6e+02 Score=27.40 Aligned_cols=11 Identities=18% Similarity=0.199 Sum_probs=0.0
Q ss_pred CccccccCccc
Q psy5512 29 DVKTTNIGGDV 39 (245)
Q Consensus 29 ~~~~p~~d~~~ 39 (245)
+++|||+|+|.
T Consensus 335 R~smPDIDiDf 345 (1034)
T PRK07279 335 RYSMPDIDIDL 345 (1034)
T ss_pred CCCCCCeeeeC
Done!