Query psy5512
Match_columns 245
No_of_seqs 97 out of 99
Neff 5.1
Searched_HMMs 29240
Date Fri Aug 16 19:22:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5512.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5512hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hhn_A Calreticulin; molecular 6.2 4.9E+02 0.017 19.6 3.6 8 180-187 78-85 (101)
2 3ie4_A GRAM-negative binding p 2.9 4.3E+02 0.015 19.9 0.9 22 32-58 3-24 (107)
3 2dir_A Thump domain-containing 2.5 4.9E+02 0.017 18.5 0.9 18 216-233 63-80 (98)
4 2hnh_A DNA polymerase III alph 1.9 5.7E+02 0.02 26.2 0.6 12 29-40 396-407 (910)
5 4acr_A Glypican-1; proteoglyca 1.8 1.1E+03 0.038 22.4 2.3 15 214-228 436-450 (478)
6 2l4w_A Uncharacterized protein 1.7 1.3E+03 0.044 17.8 2.0 14 178-191 6-19 (120)
7 3gf6_A Uncharacterized bacteri 1.5 1.1E+03 0.037 19.6 1.4 10 235-244 52-61 (224)
8 2pww_A Uncharacterized protein 1.5 6.6E+02 0.023 19.7 0.1 24 219-242 62-85 (127)
9 2r5x_A Protein YUGN, uncharact 1.4 7.6E+02 0.026 19.4 0.3 24 219-242 62-85 (129)
10 3f2b_A DNA-directed DNA polyme 1.4 7E+02 0.024 26.2 0.0 10 29-38 554-563 (1041)
No 1
>1hhn_A Calreticulin; molecular chaperone; NMR {Rattus norvegicus} SCOP: b.104.1.1 PDB: 1k9c_A 1k91_A
Probab=6.23 E-value=4.9e+02 Score=19.63 Aligned_cols=8 Identities=25% Similarity=0.522 Sum_probs=3.2
Q ss_pred CCCCCCCC
Q psy5512 180 TPNIGGDV 187 (245)
Q Consensus 180 ~Pd~~G~~ 187 (245)
||+|.|.+
T Consensus 78 NP~Ykg~W 85 (101)
T 1hhn_A 78 NPDYKGTW 85 (101)
T ss_dssp CSSCCCCC
T ss_pred CCCCCCCc
Confidence 33444433
No 2
>3ie4_A GRAM-negative binding protein 3; immunoglobulin fold, immune system; 1.45A {Drosophila melanogaster}
Probab=2.88 E-value=4.3e+02 Score=19.94 Aligned_cols=22 Identities=27% Similarity=0.220 Sum_probs=13.7
Q ss_pred ccccCcccCCCCCCCCcceeeccCCCC
Q psy5512 32 TTNIGGDVNTPNIGGDVKTHVSTPNIG 58 (245)
Q Consensus 32 ~p~~d~~~~~p~~~g~~~~~vs~P~~~ 58 (245)
+|.+.+.+-.|+ ++.||.|+-+
T Consensus 3 vP~~~ve~l~P~-----G~rvsipD~p 24 (107)
T 3ie4_A 3 VPKAKIDVFYPK-----GFEVSIPDEE 24 (107)
T ss_dssp CCCCEEEECSSS-----CEEEEEECCT
T ss_pred CCccEEEEeCCC-----CEEEEEcCCC
Confidence 466666665565 3668888654
No 3
>2dir_A Thump domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.308.1.3
Probab=2.55 E-value=4.9e+02 Score=18.48 Aligned_cols=18 Identities=17% Similarity=0.111 Sum_probs=13.4
Q ss_pred CCCccCCcCCCCccceec
Q psy5512 216 TPNIGGDVKTPKLQGNVL 233 (245)
Q Consensus 216 ~P~~~~d~~~p~~~~~~~ 233 (245)
.|.+.+|++-|++.+.|-
T Consensus 63 ~~~~kVdL~nPd~~I~VE 80 (98)
T 2dir_A 63 NSENKVDLTNPQYTVVVE 80 (98)
T ss_dssp CTTCEECSSSCSEEEEEE
T ss_pred CCCCeeEcCCCCEEEEEE
Confidence 456778888888876664
No 4
>2hnh_A DNA polymerase III alpha subunit; DNA replication, nucleotidyltransferase, beta, PHP, transferase; HET: DNA; 2.30A {Escherichia coli} PDB: 2hqa_A*
Probab=1.92 E-value=5.7e+02 Score=26.21 Aligned_cols=12 Identities=17% Similarity=0.160 Sum_probs=8.8
Q ss_pred CccccccCcccC
Q psy5512 29 DVKTTNIGGDVN 40 (245)
Q Consensus 29 ~~~~p~~d~~~~ 40 (245)
+++|||+|+|.-
T Consensus 396 R~~~PDIDiDf~ 407 (910)
T 2hnh_A 396 RVSMPDFDVDFC 407 (910)
T ss_dssp SCCCCCCCCEEC
T ss_pred CCCCCCeeeecc
Confidence 457888888763
No 5
>4acr_A Glypican-1; proteoglycan, glycosaminoglycans, heparan sulfate, helical B glycoprotein, membrane protein; HET: NAG; 2.55A {Homo sapiens} PDB: 4ad7_A*
Probab=1.80 E-value=1.1e+03 Score=22.37 Aligned_cols=15 Identities=20% Similarity=0.685 Sum_probs=11.6
Q ss_pred cCCCCccCCcCCCCc
Q psy5512 214 VKTPNIGGDVKTPKL 228 (245)
Q Consensus 214 ~~~P~~~~d~~~p~~ 228 (245)
+.||++++|+.-|+.
T Consensus 436 ~~NPEv~v~~t~Pd~ 450 (478)
T 4acr_A 436 INNPEVEVDITKPDM 450 (478)
T ss_dssp TTCSSSCCCTTCCCH
T ss_pred CCCCccccCCCCCCc
Confidence 578888888877774
No 6
>2l4w_A Uncharacterized protein; type IV secretion system, VIRB7, N0 domain, membrane protein xanthomonas, lipoprotein; NMR {Xanthomonas axonopodis PV}
Probab=1.65 E-value=1.3e+03 Score=17.83 Aligned_cols=14 Identities=29% Similarity=0.529 Sum_probs=7.0
Q ss_pred CCCCCCCCCCCCCC
Q psy5512 178 VSTPNIGGDVSTPN 191 (245)
Q Consensus 178 ~~~Pd~~G~~~~pn 191 (245)
+.+|||.|.|+--|
T Consensus 6 ~sApDF~~~WkpvN 19 (120)
T 2l4w_A 6 KPAPDFGGRWKHVN 19 (120)
T ss_dssp CCCCCCSSTTTCCC
T ss_pred CCCCCCCCCccccc
Confidence 34555555554433
No 7
>3gf6_A Uncharacterized bacterial lipoprotein; all-beta fold, structural genomics, joint center for structu genomics, JCSG; HET: MSE; 1.69A {Bacteroides thetaiotaomicron vpi-5482}
Probab=1.52 E-value=1.1e+03 Score=19.62 Aligned_cols=10 Identities=50% Similarity=0.574 Sum_probs=7.2
Q ss_pred cCcceeEEee
Q psy5512 235 TTPLKVTFLI 244 (245)
Q Consensus 235 ~~~~~~~~~~ 244 (245)
||+-|.||+|
T Consensus 52 ptlgkltfmi 61 (224)
T 3gf6_A 52 PTLGKLTFMI 61 (224)
T ss_dssp CCSSEEEEEE
T ss_pred CcceeEEEEE
Confidence 6777777776
No 8
>2pww_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.82A {Bacillus clausii} SCOP: d.129.11.1
Probab=1.49 E-value=6.6e+02 Score=19.67 Aligned_cols=24 Identities=17% Similarity=0.307 Sum_probs=0.0
Q ss_pred ccCCcCCCCccceecccCcceeEE
Q psy5512 219 IGGDVKTPKLQGNVLTTTPLKVTF 242 (245)
Q Consensus 219 ~~~d~~~p~~~~~~~~~~~~~~~~ 242 (245)
++|||..+++.++|-+|-++|-.|
T Consensus 62 veG~l~~~~A~v~L~~P~LgkH~Y 85 (127)
T 2pww_A 62 VKGEIPRPSTIVQIMTPILGKYYY 85 (127)
T ss_dssp EESCTTCTTCEEEECCCEEEECCT
T ss_pred ecCccCCCCeEEEeCCeeEEEeEC
No 9
>2r5x_A Protein YUGN, uncharacterized conserved protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.04A {Geobacillus kaustophilus}
Probab=1.44 E-value=7.6e+02 Score=19.36 Aligned_cols=24 Identities=25% Similarity=0.187 Sum_probs=0.0
Q ss_pred ccCCcCCCCccceecccCcceeEE
Q psy5512 219 IGGDVKTPKLQGNVLTTTPLKVTF 242 (245)
Q Consensus 219 ~~~d~~~p~~~~~~~~~~~~~~~~ 242 (245)
++|+|..+++.++|-+|-++|-.|
T Consensus 62 veG~l~~~~A~v~l~~P~lgkH~Y 85 (129)
T 2r5x_A 62 IEGNVDSRYALIKLLTPIMGKHYY 85 (129)
T ss_dssp EEECTTSSSEEEEECCCEEEEEET
T ss_pred ecCccCCCCeEEEeCCeeEEeeeC
No 10
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=1.39 E-value=7e+02 Score=26.15 Aligned_cols=10 Identities=20% Similarity=0.155 Sum_probs=0.0
Q ss_pred CccccccCcc
Q psy5512 29 DVKTTNIGGD 38 (245)
Q Consensus 29 ~~~~p~~d~~ 38 (245)
+++|||+|+|
T Consensus 554 R~~~PDIDlD 563 (1041)
T 3f2b_A 554 GDKVPDIDLN 563 (1041)
T ss_dssp SCSCCCEEEE
T ss_pred CCCCCCcceE
Done!