RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy5512
         (245 letters)



>1k7i_A PROC, secreted protease C; metalloprotease, hydrolase; 1.59A
           {Erwinia chrysanthemi} SCOP: b.80.7.1 d.92.1.6 PDB:
           1k7g_A 1k7q_A 1go8_P 3hbv_P 3hda_P 3hbu_P 1go7_P 3hb2_P
          Length = 479

 Score = 27.9 bits (61), Expect = 3.5
 Identities = 28/200 (14%), Positives = 42/200 (21%), Gaps = 1/200 (0%)

Query: 9   GGDFNTPNIGGDVNTRNIGGDVKTTNIGGDVNTPNIGGDVKTHVSTPNIGGDVNTPNIGG 68
            G++N        N      D    +I         G D   H     +  D+       
Sbjct: 199 PGEYNAGEGDPSYNDAVYAEDSYQFSIMSFWGENETGADYNGHYGGAPMIDDIAAIQRLY 258

Query: 69  DVKTPNIGGDVKTPNIGGDVKTPNIGGDVKTTNIGGDVNTPNIGGDVNAPNIGGDVNAPN 128
                   GD          +      D     I    +         +          N
Sbjct: 259 GANMTTRTGDSVYGFNSNTDRDFYTATDSSKALIFSVWDAGGTDTFDFSGYSNNQRINLN 318

Query: 129 IGGDVKT-PNIGGDVNTPNIGGDVNAPNIGGDVNTPNMGGDVNTPNIGGDVSTPNIGGDV 187
            G         G       +  +      G D+   N   ++     G DV     G D 
Sbjct: 319 EGSFSDVGGLKGNVSIAHGVTIENAIGGSGNDILVGNSADNILQGGAGNDVLYGGAGADT 378

Query: 188 STPNIGGDVNTPNIGGDVST 207
                G D      G D + 
Sbjct: 379 LYGGAGRDTFVYGSGQDSTV 398


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.308    0.140    0.417 

Gapped
Lambda     K      H
   0.267   0.0546    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,732,151
Number of extensions: 245483
Number of successful extensions: 644
Number of sequences better than 10.0: 1
Number of HSP's gapped: 300
Number of HSP's successfully gapped: 69
Length of query: 245
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 154
Effective length of database: 4,160,982
Effective search space: 640791228
Effective search space used: 640791228
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 56 (25.8 bits)